Multiple sequence alignment - TraesCS6B01G265900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G265900 chr6B 100.000 9366 0 0 1 9366 477838955 477829590 0.000000e+00 17296.0
1 TraesCS6B01G265900 chr6B 81.298 786 131 14 8 782 608191942 608191162 2.870000e-174 623.0
2 TraesCS6B01G265900 chr6B 86.141 469 50 7 8904 9364 690290871 690291332 8.450000e-135 492.0
3 TraesCS6B01G265900 chr6B 85.987 471 48 8 8903 9363 230765186 230765648 1.090000e-133 488.0
4 TraesCS6B01G265900 chr6B 86.605 433 47 6 8939 9366 702278786 702279212 1.420000e-127 468.0
5 TraesCS6B01G265900 chr6B 79.043 606 122 5 3 605 125397456 125398059 2.430000e-110 411.0
6 TraesCS6B01G265900 chr6D 97.586 4019 59 7 880 4882 310133841 310129845 0.000000e+00 6850.0
7 TraesCS6B01G265900 chr6D 96.056 3981 89 18 4963 8912 310129847 310125904 0.000000e+00 6420.0
8 TraesCS6B01G265900 chr6D 94.000 100 6 0 4867 4966 68082847 68082946 1.630000e-32 152.0
9 TraesCS6B01G265900 chr6D 95.833 48 1 1 781 828 310134146 310134100 1.010000e-09 76.8
10 TraesCS6B01G265900 chr6D 100.000 29 0 0 8907 8935 435805963 435805935 5.000000e-03 54.7
11 TraesCS6B01G265900 chr6A 93.827 3013 113 18 5551 8529 446759342 446756369 0.000000e+00 4466.0
12 TraesCS6B01G265900 chr6A 95.808 2648 91 6 1950 4593 446763264 446760633 0.000000e+00 4257.0
13 TraesCS6B01G265900 chr6A 95.455 1100 32 8 781 1869 446764353 446763261 0.000000e+00 1738.0
14 TraesCS6B01G265900 chr6A 94.941 593 24 6 4963 5552 446760013 446759424 0.000000e+00 924.0
15 TraesCS6B01G265900 chr6A 94.413 179 9 1 4705 4882 446760189 446760011 3.330000e-69 274.0
16 TraesCS6B01G265900 chr6A 88.000 200 10 4 8715 8906 446756240 446756047 3.400000e-54 224.0
17 TraesCS6B01G265900 chr6A 92.913 127 5 2 4568 4691 446760560 446760435 2.080000e-41 182.0
18 TraesCS6B01G265900 chr6A 95.062 81 4 0 8626 8706 446756364 446756284 2.750000e-25 128.0
19 TraesCS6B01G265900 chr4B 90.044 2270 192 17 2455 4700 122214530 122216789 0.000000e+00 2909.0
20 TraesCS6B01G265900 chr4B 88.432 2213 222 16 5571 7754 122218328 122220535 0.000000e+00 2638.0
21 TraesCS6B01G265900 chr4B 84.767 1569 172 25 929 2456 122212895 122214437 0.000000e+00 1511.0
22 TraesCS6B01G265900 chr4B 92.611 785 56 2 1 784 95429682 95430465 0.000000e+00 1127.0
23 TraesCS6B01G265900 chr4B 84.028 864 88 27 7678 8516 122220549 122221387 0.000000e+00 785.0
24 TraesCS6B01G265900 chr4B 88.454 485 39 10 5029 5500 122217214 122217694 3.790000e-158 569.0
25 TraesCS6B01G265900 chr4B 86.141 469 52 5 8902 9365 659602448 659602908 2.350000e-135 494.0
26 TraesCS6B01G265900 chr4B 78.947 589 123 1 24 611 546711702 546712290 5.270000e-107 399.0
27 TraesCS6B01G265900 chr4B 75.096 783 170 20 12 782 673227535 673226766 9.010000e-90 342.0
28 TraesCS6B01G265900 chr4A 89.683 2268 205 11 2455 4700 498694915 498697175 0.000000e+00 2865.0
29 TraesCS6B01G265900 chr4A 88.336 2212 225 16 5571 7754 498698798 498701004 0.000000e+00 2625.0
30 TraesCS6B01G265900 chr4A 85.844 1208 126 18 929 2105 498693078 498694271 0.000000e+00 1242.0
31 TraesCS6B01G265900 chr4A 84.107 862 82 28 7678 8516 498701108 498701937 0.000000e+00 782.0
32 TraesCS6B01G265900 chr4A 89.429 473 43 6 5029 5499 498697684 498698151 2.910000e-164 590.0
33 TraesCS6B01G265900 chr4A 83.333 306 50 1 8 312 642460751 642461056 1.990000e-71 281.0
34 TraesCS6B01G265900 chr4A 96.842 95 3 0 4879 4973 589084855 589084949 9.730000e-35 159.0
35 TraesCS6B01G265900 chr4A 84.615 78 5 3 8907 8983 584999533 584999462 4.690000e-08 71.3
36 TraesCS6B01G265900 chr4D 89.564 2271 205 13 2455 4700 85003581 85005844 0.000000e+00 2852.0
37 TraesCS6B01G265900 chr4D 88.969 2212 210 15 5571 7754 85007816 85010021 0.000000e+00 2702.0
38 TraesCS6B01G265900 chr4D 84.879 1574 168 31 929 2456 85001950 85003499 0.000000e+00 1524.0
39 TraesCS6B01G265900 chr4D 83.526 777 85 21 7678 8438 85010125 85010874 0.000000e+00 686.0
40 TraesCS6B01G265900 chr4D 87.631 477 43 12 5029 5493 85006249 85006721 2.980000e-149 540.0
41 TraesCS6B01G265900 chr2B 93.376 785 49 3 1 783 362695996 362695213 0.000000e+00 1158.0
42 TraesCS6B01G265900 chr2B 86.168 441 50 8 8934 9366 216715727 216716164 5.120000e-127 466.0
43 TraesCS6B01G265900 chr2B 85.523 449 48 10 8934 9366 664504292 664504739 3.990000e-123 453.0
44 TraesCS6B01G265900 chr2B 84.694 98 6 3 8905 9000 711309704 711309794 1.300000e-13 89.8
45 TraesCS6B01G265900 chr2B 81.443 97 9 3 8901 8996 161718792 161718704 4.690000e-08 71.3
46 TraesCS6B01G265900 chrUn 92.830 781 54 2 2 781 339084142 339083363 0.000000e+00 1131.0
47 TraesCS6B01G265900 chr7B 91.465 785 62 5 1 783 44264297 44265078 0.000000e+00 1074.0
48 TraesCS6B01G265900 chr7B 81.430 797 132 14 8 793 561039890 561040681 1.030000e-178 638.0
49 TraesCS6B01G265900 chr7B 81.505 784 130 14 8 781 113307917 113308695 1.720000e-176 630.0
50 TraesCS6B01G265900 chr7B 100.000 29 0 0 8907 8935 387834300 387834328 5.000000e-03 54.7
51 TraesCS6B01G265900 chr2A 88.622 791 81 7 1 783 31939725 31940514 0.000000e+00 953.0
52 TraesCS6B01G265900 chr1A 87.452 789 74 9 3 784 337946576 337947346 0.000000e+00 885.0
53 TraesCS6B01G265900 chr1A 81.146 785 137 9 8 783 18281058 18280276 3.720000e-173 619.0
54 TraesCS6B01G265900 chr1A 77.564 156 31 4 371 524 423675032 423675185 3.600000e-14 91.6
55 TraesCS6B01G265900 chr3D 82.846 787 121 12 8 784 41609578 41608796 0.000000e+00 693.0
56 TraesCS6B01G265900 chr5B 81.576 787 128 15 8 783 634327501 634328281 1.330000e-177 634.0
57 TraesCS6B01G265900 chr5B 78.676 272 37 14 8902 9166 609854641 609854898 2.710000e-35 161.0
58 TraesCS6B01G265900 chr1B 92.798 361 26 0 1 361 137155898 137155538 3.000000e-144 523.0
59 TraesCS6B01G265900 chr1B 93.623 345 22 0 439 783 137155534 137155190 5.010000e-142 516.0
60 TraesCS6B01G265900 chr1B 84.861 469 56 7 8907 9366 34215792 34216254 8.570000e-125 459.0
61 TraesCS6B01G265900 chr1B 77.961 608 125 8 9 611 454630400 454631003 1.150000e-98 372.0
62 TraesCS6B01G265900 chr5D 86.301 438 38 9 8934 9350 133863988 133863552 3.080000e-124 457.0
63 TraesCS6B01G265900 chr5D 89.565 115 8 4 4858 4968 57225936 57226050 9.800000e-30 143.0
64 TraesCS6B01G265900 chr5D 100.000 27 0 0 8908 8934 40695078 40695052 6.100000e-02 51.0
65 TraesCS6B01G265900 chr1D 84.894 470 52 9 8908 9366 454506129 454506590 3.080000e-124 457.0
66 TraesCS6B01G265900 chr5A 92.982 114 3 4 4857 4966 376541893 376542005 2.710000e-35 161.0
67 TraesCS6B01G265900 chr5A 94.845 97 4 1 4876 4972 324692657 324692562 5.860000e-32 150.0
68 TraesCS6B01G265900 chr7D 96.842 95 1 2 4880 4973 220083736 220083643 3.500000e-34 158.0
69 TraesCS6B01G265900 chr7D 96.842 95 1 2 4880 4973 220096515 220096422 3.500000e-34 158.0
70 TraesCS6B01G265900 chr7A 95.789 95 4 0 4878 4972 84495309 84495403 4.530000e-33 154.0
71 TraesCS6B01G265900 chr7A 100.000 30 0 0 8904 8933 513982329 513982300 1.000000e-03 56.5
72 TraesCS6B01G265900 chr3B 88.889 117 11 2 4851 4965 434307489 434307605 9.800000e-30 143.0
73 TraesCS6B01G265900 chr3A 100.000 29 0 0 8907 8935 663461206 663461178 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G265900 chr6B 477829590 477838955 9365 True 17296.000000 17296 100.000000 1 9366 1 chr6B.!!$R1 9365
1 TraesCS6B01G265900 chr6B 608191162 608191942 780 True 623.000000 623 81.298000 8 782 1 chr6B.!!$R2 774
2 TraesCS6B01G265900 chr6B 125397456 125398059 603 False 411.000000 411 79.043000 3 605 1 chr6B.!!$F1 602
3 TraesCS6B01G265900 chr6D 310125904 310134146 8242 True 4448.933333 6850 96.491667 781 8912 3 chr6D.!!$R2 8131
4 TraesCS6B01G265900 chr6A 446756047 446764353 8306 True 1524.125000 4466 93.802375 781 8906 8 chr6A.!!$R1 8125
5 TraesCS6B01G265900 chr4B 122212895 122221387 8492 False 1682.400000 2909 87.145000 929 8516 5 chr4B.!!$F4 7587
6 TraesCS6B01G265900 chr4B 95429682 95430465 783 False 1127.000000 1127 92.611000 1 784 1 chr4B.!!$F1 783
7 TraesCS6B01G265900 chr4B 546711702 546712290 588 False 399.000000 399 78.947000 24 611 1 chr4B.!!$F2 587
8 TraesCS6B01G265900 chr4B 673226766 673227535 769 True 342.000000 342 75.096000 12 782 1 chr4B.!!$R1 770
9 TraesCS6B01G265900 chr4A 498693078 498701937 8859 False 1620.800000 2865 87.479800 929 8516 5 chr4A.!!$F3 7587
10 TraesCS6B01G265900 chr4D 85001950 85010874 8924 False 1660.800000 2852 86.913800 929 8438 5 chr4D.!!$F1 7509
11 TraesCS6B01G265900 chr2B 362695213 362695996 783 True 1158.000000 1158 93.376000 1 783 1 chr2B.!!$R2 782
12 TraesCS6B01G265900 chrUn 339083363 339084142 779 True 1131.000000 1131 92.830000 2 781 1 chrUn.!!$R1 779
13 TraesCS6B01G265900 chr7B 44264297 44265078 781 False 1074.000000 1074 91.465000 1 783 1 chr7B.!!$F1 782
14 TraesCS6B01G265900 chr7B 561039890 561040681 791 False 638.000000 638 81.430000 8 793 1 chr7B.!!$F4 785
15 TraesCS6B01G265900 chr7B 113307917 113308695 778 False 630.000000 630 81.505000 8 781 1 chr7B.!!$F2 773
16 TraesCS6B01G265900 chr2A 31939725 31940514 789 False 953.000000 953 88.622000 1 783 1 chr2A.!!$F1 782
17 TraesCS6B01G265900 chr1A 337946576 337947346 770 False 885.000000 885 87.452000 3 784 1 chr1A.!!$F1 781
18 TraesCS6B01G265900 chr1A 18280276 18281058 782 True 619.000000 619 81.146000 8 783 1 chr1A.!!$R1 775
19 TraesCS6B01G265900 chr3D 41608796 41609578 782 True 693.000000 693 82.846000 8 784 1 chr3D.!!$R1 776
20 TraesCS6B01G265900 chr5B 634327501 634328281 780 False 634.000000 634 81.576000 8 783 1 chr5B.!!$F2 775
21 TraesCS6B01G265900 chr1B 137155190 137155898 708 True 519.500000 523 93.210500 1 783 2 chr1B.!!$R1 782
22 TraesCS6B01G265900 chr1B 454630400 454631003 603 False 372.000000 372 77.961000 9 611 1 chr1B.!!$F2 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 474 1.134189 GCATACTTTCCCGGCTAACCT 60.134 52.381 0.00 0.00 0.00 3.50 F
1438 1685 0.532115 GAATTGCAACGGCCTGGAAT 59.468 50.000 0.00 5.97 38.82 3.01 F
2239 2607 0.035343 GCAGGGTTCCCTTGTACCTC 60.035 60.000 7.79 0.00 33.50 3.85 F
3367 4096 0.107508 CATGCAACCGGGAGATCTGT 60.108 55.000 6.32 0.00 0.00 3.41 F
4313 5042 0.407528 TTTCTGGCTGCCATTGGGTA 59.592 50.000 23.64 0.95 36.17 3.69 F
5524 6714 2.493278 CACCTGCAAAATGGAAGGTAGG 59.507 50.000 0.00 0.00 38.83 3.18 F
6392 8660 3.369471 GGAACGAGATGTTGATCTTCCCA 60.369 47.826 0.00 0.00 42.09 4.37 F
7692 10249 1.073199 GGGTGGGGATATTGCCTCG 59.927 63.158 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2453 0.178981 ACTGCAGGTCCAAGCACAAT 60.179 50.000 19.93 0.00 36.62 2.71 R
3367 4096 2.126882 ACCATGCTGGCATAGGTAGAA 58.873 47.619 19.90 0.00 42.67 2.10 R
3451 4180 3.503748 ACTCGAGAAAATCAAAGCCAAGG 59.496 43.478 21.68 0.00 0.00 3.61 R
4403 5132 1.562672 CCTCCCAGTACCCAAGGTGG 61.563 65.000 0.00 0.00 36.19 4.61 R
5647 7882 3.554524 CATGTAAAACCAGTGCTCAACG 58.445 45.455 0.00 0.00 0.00 4.10 R
6406 8674 2.930950 ACTAAGCAAACTGAAGCACCA 58.069 42.857 0.00 0.00 0.00 4.17 R
7782 10339 1.027357 CATGAAAGCCAGAATCCCGG 58.973 55.000 0.00 0.00 0.00 5.73 R
9061 11712 0.028770 TGCAAAAGTCGCCGAGTTTG 59.971 50.000 19.65 17.23 35.66 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.296715 CGGTTAGCTGGCCTCACTT 59.703 57.895 3.32 0.00 0.00 3.16
74 76 1.339631 CCAAACTTATCTCGGGTGCCA 60.340 52.381 0.00 0.00 0.00 4.92
125 127 4.684724 TGCCCGTATTCCTCCTAAGATAT 58.315 43.478 0.00 0.00 0.00 1.63
297 306 3.372440 TGGAGCTGTATCAGACTCTGA 57.628 47.619 11.24 11.24 44.99 3.27
312 321 7.670364 TCAGACTCTGACTTCATGTTAATTGA 58.330 34.615 4.50 0.00 35.39 2.57
331 340 4.559576 TGATATCCCTCCTCCTTTGAGA 57.440 45.455 0.00 0.00 41.42 3.27
422 432 1.264749 TGTTGGGCGCTCTGGACTAT 61.265 55.000 9.62 0.00 0.00 2.12
464 474 1.134189 GCATACTTTCCCGGCTAACCT 60.134 52.381 0.00 0.00 0.00 3.50
538 552 3.717913 GACTAAGGGAGAGGACCTAGAGA 59.282 52.174 0.00 0.00 37.35 3.10
636 651 7.343357 AGTTTCGGATAATGTGGGAATTTCTA 58.657 34.615 0.00 0.00 0.00 2.10
733 758 3.006967 GGGTGACTATGTTGTGACTCTGT 59.993 47.826 0.00 0.00 0.00 3.41
751 776 6.757237 ACTCTGTCTGATGGCTTTATCTATG 58.243 40.000 0.00 0.00 0.00 2.23
758 783 6.265422 TCTGATGGCTTTATCTATGAAGTCGA 59.735 38.462 0.00 0.00 31.44 4.20
766 791 6.555812 TTATCTATGAAGTCGAGCGTATGT 57.444 37.500 0.00 0.00 0.00 2.29
842 867 1.776662 TTAGACCATCTCCCTGACGG 58.223 55.000 0.00 0.00 33.57 4.79
905 1141 1.376424 CCAGAGCACGGCAACATCT 60.376 57.895 0.00 0.00 0.00 2.90
1357 1600 6.335777 GTTTAATCTAAGTAGCTCGGGTTGA 58.664 40.000 0.00 0.00 0.00 3.18
1373 1616 1.366111 TTGAGGGCGCTTCGTATTGC 61.366 55.000 7.64 0.00 0.00 3.56
1405 1652 5.461032 TTTGGTTATTCGTGAGGCAATTT 57.539 34.783 0.00 0.00 0.00 1.82
1434 1681 0.597568 TTCTGAATTGCAACGGCCTG 59.402 50.000 0.00 0.00 40.13 4.85
1435 1682 1.213537 CTGAATTGCAACGGCCTGG 59.786 57.895 0.00 0.00 40.13 4.45
1436 1683 1.228398 TGAATTGCAACGGCCTGGA 60.228 52.632 0.00 0.00 40.13 3.86
1437 1684 0.825425 TGAATTGCAACGGCCTGGAA 60.825 50.000 0.00 0.26 40.13 3.53
1438 1685 0.532115 GAATTGCAACGGCCTGGAAT 59.468 50.000 0.00 5.97 38.82 3.01
1471 1718 2.626743 GCAGGGATTGGATGATTTCCTG 59.373 50.000 0.00 0.00 45.68 3.86
1607 1854 5.243730 CCCCTTGTTTCATGTAACATCTGTT 59.756 40.000 17.26 0.69 37.81 3.16
1750 1997 4.414852 CAGTTTGTTCCTGTGTTGTTCAG 58.585 43.478 0.00 0.00 0.00 3.02
1768 2015 4.418013 TCAGTTGTGTTGTGACTGTTTG 57.582 40.909 0.00 0.00 41.12 2.93
1795 2058 2.105477 AGACCAGTGTGTGATTTCTGCT 59.895 45.455 0.00 0.00 0.00 4.24
2187 2553 2.638480 ACTGCTGTTCCTTTACTGCA 57.362 45.000 7.83 7.83 46.38 4.41
2239 2607 0.035343 GCAGGGTTCCCTTGTACCTC 60.035 60.000 7.79 0.00 33.50 3.85
2376 2975 0.184933 TAAGGTTGCTTGCACCCACT 59.815 50.000 11.60 1.19 34.44 4.00
3367 4096 0.107508 CATGCAACCGGGAGATCTGT 60.108 55.000 6.32 0.00 0.00 3.41
3955 4684 5.757808 GGGTTTAAGCATTTCAAAGCAGAAA 59.242 36.000 0.00 2.22 41.31 2.52
4313 5042 0.407528 TTTCTGGCTGCCATTGGGTA 59.592 50.000 23.64 0.95 36.17 3.69
4395 5124 2.761208 ACTTAGATCCGGTGAACAGGAG 59.239 50.000 0.00 0.00 43.21 3.69
4403 5132 2.622436 CGGTGAACAGGAGAAATCCTC 58.378 52.381 0.00 0.00 38.22 3.71
4821 5983 9.844257 TTTTTGTTCCCATTGATGATTAAACTT 57.156 25.926 0.00 0.00 0.00 2.66
4887 6050 9.845214 ATGTAGAGATTTTATATGGTACTCCCT 57.155 33.333 0.00 0.00 0.00 4.20
4889 6052 9.536510 GTAGAGATTTTATATGGTACTCCCTCT 57.463 37.037 0.00 0.00 0.00 3.69
4890 6053 8.429237 AGAGATTTTATATGGTACTCCCTCTG 57.571 38.462 0.00 0.00 0.00 3.35
4891 6054 8.013667 AGAGATTTTATATGGTACTCCCTCTGT 58.986 37.037 0.00 0.00 0.00 3.41
4892 6055 9.310449 GAGATTTTATATGGTACTCCCTCTGTA 57.690 37.037 0.00 0.00 0.00 2.74
4893 6056 9.670442 AGATTTTATATGGTACTCCCTCTGTAA 57.330 33.333 0.00 0.00 0.00 2.41
4896 6059 8.849543 TTTATATGGTACTCCCTCTGTAAACT 57.150 34.615 0.00 0.00 0.00 2.66
4897 6060 9.940974 TTTATATGGTACTCCCTCTGTAAACTA 57.059 33.333 0.00 0.00 0.00 2.24
4898 6061 9.940974 TTATATGGTACTCCCTCTGTAAACTAA 57.059 33.333 0.00 0.00 0.00 2.24
4903 6066 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
4907 6070 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4908 6071 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4909 6072 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4910 6073 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4911 6074 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4959 6122 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4960 6123 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
4961 6124 8.910944 ACGCTCTTATATTAGTTTACAGAGGAA 58.089 33.333 0.00 0.00 0.00 3.36
5267 6456 3.904965 TCCACCACTACATTTCCTGTGTA 59.095 43.478 0.00 0.00 38.92 2.90
5471 6661 3.134804 AGCTGTTTGGAACTCACTACTGT 59.865 43.478 0.00 0.00 0.00 3.55
5524 6714 2.493278 CACCTGCAAAATGGAAGGTAGG 59.507 50.000 0.00 0.00 38.83 3.18
5595 7828 8.196771 ACACATCTCACTTAAATTTGCAGAAAA 58.803 29.630 0.00 0.00 0.00 2.29
5708 7957 9.260002 GTGGTGTACATTTCATTTGAATTCTTT 57.740 29.630 7.05 0.00 33.54 2.52
5798 8066 8.402472 CCTATCAAAACATAAATGCCTACGAAA 58.598 33.333 0.00 0.00 0.00 3.46
6116 8384 5.360714 AGCAAAAGAACTGTTCTCCATTCAA 59.639 36.000 22.24 0.00 39.61 2.69
6262 8530 6.825721 GCATCATTCCGGGAAGATTATCTAAT 59.174 38.462 15.72 0.00 0.00 1.73
6265 8533 5.757099 TTCCGGGAAGATTATCTAATCCC 57.243 43.478 17.86 17.86 42.29 3.85
6320 8588 8.655651 AAAGAATATGATTTTCTCTCGGAGAC 57.344 34.615 2.97 0.00 38.51 3.36
6392 8660 3.369471 GGAACGAGATGTTGATCTTCCCA 60.369 47.826 0.00 0.00 42.09 4.37
6406 8674 5.911178 TGATCTTCCCATGGACCTAATACTT 59.089 40.000 15.22 0.00 0.00 2.24
6407 8675 5.630415 TCTTCCCATGGACCTAATACTTG 57.370 43.478 15.22 0.00 0.00 3.16
6478 8746 1.470098 GAATTCACAGCGCCAACAGAT 59.530 47.619 2.29 0.00 0.00 2.90
6579 8848 7.095910 TGCATAATGGTAATTGGTTTGAACTG 58.904 34.615 0.00 0.00 0.00 3.16
6584 8853 4.646945 TGGTAATTGGTTTGAACTGCTGAA 59.353 37.500 0.00 0.00 0.00 3.02
7107 9376 3.195610 AGTCTGTAATGACCGAATGCTCA 59.804 43.478 0.00 0.00 37.66 4.26
7202 9471 6.349280 GCTTTTGCAGTACCAAATAGTGATCA 60.349 38.462 0.00 0.00 46.58 2.92
7240 9509 1.541379 AAACCGATTGCCTGGTAACC 58.459 50.000 0.00 0.00 37.54 2.85
7252 9521 4.471747 TGCCTGGTAACCATGTAGAACATA 59.528 41.667 0.00 0.00 36.53 2.29
7253 9522 5.045505 TGCCTGGTAACCATGTAGAACATAA 60.046 40.000 0.00 0.00 36.53 1.90
7254 9523 5.296035 GCCTGGTAACCATGTAGAACATAAC 59.704 44.000 0.00 0.00 36.53 1.89
7275 9550 3.261580 CAATGTATTCTCACAGCCGACA 58.738 45.455 0.00 0.00 0.00 4.35
7692 10249 1.073199 GGGTGGGGATATTGCCTCG 59.927 63.158 0.00 0.00 0.00 4.63
7782 10339 3.340337 AGTTCGCTTGCTTTTCTGAAC 57.660 42.857 0.00 0.00 36.77 3.18
7784 10341 0.586319 TCGCTTGCTTTTCTGAACCG 59.414 50.000 0.00 0.00 0.00 4.44
7919 10476 4.217118 AGCAATGATGTCAAACTCAAGGAC 59.783 41.667 0.00 0.00 0.00 3.85
7922 10479 4.271696 TGATGTCAAACTCAAGGACGAT 57.728 40.909 0.00 0.00 34.32 3.73
8044 10610 1.673767 TGGGAAAGCCAGAGAAGGAT 58.326 50.000 0.00 0.00 35.15 3.24
8539 11127 5.011982 ACTCCCTCCGATCCATAATAAGA 57.988 43.478 0.00 0.00 0.00 2.10
8564 11152 4.298103 TGGATCGGAGGGAGTAGTATAC 57.702 50.000 0.00 0.00 43.47 1.47
8585 11173 5.734855 ACTGTTTATGTTGTCTGACACAC 57.265 39.130 10.56 12.06 33.41 3.82
8677 11265 3.245122 GGGGACAGGGAATGTTTGTCTTA 60.245 47.826 4.15 0.00 44.17 2.10
8707 11295 3.261250 AGCTGCAAGGTTGATCTGG 57.739 52.632 1.02 0.00 46.63 3.86
8708 11296 0.403271 AGCTGCAAGGTTGATCTGGT 59.597 50.000 1.02 0.00 46.63 4.00
8709 11297 0.807496 GCTGCAAGGTTGATCTGGTC 59.193 55.000 0.00 0.00 0.00 4.02
8710 11298 1.612726 GCTGCAAGGTTGATCTGGTCT 60.613 52.381 0.00 0.00 0.00 3.85
8711 11299 2.354259 CTGCAAGGTTGATCTGGTCTC 58.646 52.381 0.00 0.00 0.00 3.36
8805 11432 4.678509 ATGTTGGCATTACGTACTGTTG 57.321 40.909 13.66 2.89 29.54 3.33
8815 11466 6.074302 GCATTACGTACTGTTGACTGGATATG 60.074 42.308 13.66 2.91 0.00 1.78
8816 11467 3.782046 ACGTACTGTTGACTGGATATGC 58.218 45.455 0.00 0.00 0.00 3.14
8817 11468 3.123804 CGTACTGTTGACTGGATATGCC 58.876 50.000 0.00 0.00 37.10 4.40
8818 11469 2.315925 ACTGTTGACTGGATATGCCG 57.684 50.000 0.00 0.00 40.66 5.69
8824 11475 2.670934 CTGGATATGCCGGCCAGC 60.671 66.667 26.77 14.87 42.30 4.85
8825 11476 4.269523 TGGATATGCCGGCCAGCC 62.270 66.667 26.77 23.97 40.66 4.85
8826 11477 3.958860 GGATATGCCGGCCAGCCT 61.959 66.667 26.77 0.23 0.00 4.58
8827 11478 2.359230 GATATGCCGGCCAGCCTC 60.359 66.667 26.77 9.89 0.00 4.70
8828 11479 3.170672 ATATGCCGGCCAGCCTCA 61.171 61.111 26.77 2.60 0.00 3.86
8829 11480 3.188015 ATATGCCGGCCAGCCTCAG 62.188 63.158 26.77 0.00 0.00 3.35
8834 11485 4.790962 CGGCCAGCCTCAGCACAT 62.791 66.667 2.24 0.00 43.56 3.21
8835 11486 2.591753 GGCCAGCCTCAGCACATA 59.408 61.111 0.00 0.00 43.56 2.29
8836 11487 1.821332 GGCCAGCCTCAGCACATAC 60.821 63.158 0.00 0.00 43.56 2.39
8837 11488 2.176273 GCCAGCCTCAGCACATACG 61.176 63.158 0.00 0.00 43.56 3.06
8838 11489 1.219124 CCAGCCTCAGCACATACGT 59.781 57.895 0.00 0.00 43.56 3.57
8862 11513 1.267121 TGGTCTACCTTGTCCAGCTC 58.733 55.000 0.02 0.00 36.82 4.09
8863 11514 1.267121 GGTCTACCTTGTCCAGCTCA 58.733 55.000 0.00 0.00 0.00 4.26
8870 11521 2.260844 CTTGTCCAGCTCAAGGAACA 57.739 50.000 5.87 0.00 38.70 3.18
8871 11522 1.876156 CTTGTCCAGCTCAAGGAACAC 59.124 52.381 5.87 0.00 38.70 3.32
8872 11523 0.108585 TGTCCAGCTCAAGGAACACC 59.891 55.000 0.00 0.00 36.80 4.16
8887 11538 5.367302 AGGAACACCATTTGAAATTGTTGG 58.633 37.500 11.46 3.64 30.60 3.77
8912 11563 1.403972 GCGTCCGACTTGCGTAAGAG 61.404 60.000 20.61 12.50 43.02 2.85
8913 11564 1.403972 CGTCCGACTTGCGTAAGAGC 61.404 60.000 20.61 10.08 43.02 4.09
8914 11565 0.388134 GTCCGACTTGCGTAAGAGCA 60.388 55.000 20.61 0.00 46.54 4.26
8927 11578 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
8928 11579 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
8929 11580 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
8956 11607 3.747976 CCCCAGGCGCCGAAAAAG 61.748 66.667 23.20 7.88 0.00 2.27
8957 11608 2.671619 CCCAGGCGCCGAAAAAGA 60.672 61.111 23.20 0.00 0.00 2.52
8958 11609 2.690778 CCCAGGCGCCGAAAAAGAG 61.691 63.158 23.20 4.45 0.00 2.85
8959 11610 2.176792 CAGGCGCCGAAAAAGAGC 59.823 61.111 23.20 0.00 0.00 4.09
8963 11614 4.460873 CGCCGAAAAAGAGCGCCC 62.461 66.667 2.29 0.00 43.72 6.13
8964 11615 3.056328 GCCGAAAAAGAGCGCCCT 61.056 61.111 2.29 0.00 0.00 5.19
8965 11616 2.870372 CCGAAAAAGAGCGCCCTG 59.130 61.111 2.29 0.00 0.00 4.45
8966 11617 2.690778 CCGAAAAAGAGCGCCCTGG 61.691 63.158 2.29 0.00 0.00 4.45
8967 11618 2.690778 CGAAAAAGAGCGCCCTGGG 61.691 63.158 8.86 8.86 0.00 4.45
8968 11619 2.283173 AAAAAGAGCGCCCTGGGG 60.283 61.111 16.03 4.75 38.57 4.96
8990 11641 4.867599 CCGGCGCTAGTTCGGTCC 62.868 72.222 7.64 0.00 39.04 4.46
8991 11642 4.867599 CGGCGCTAGTTCGGTCCC 62.868 72.222 7.64 0.00 0.00 4.46
8992 11643 3.459063 GGCGCTAGTTCGGTCCCT 61.459 66.667 7.64 0.00 0.00 4.20
8993 11644 2.202756 GCGCTAGTTCGGTCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
8994 11645 2.494918 CGCTAGTTCGGTCCCTGG 59.505 66.667 0.00 0.00 0.00 4.45
8995 11646 2.901042 GCTAGTTCGGTCCCTGGG 59.099 66.667 6.33 6.33 0.00 4.45
8996 11647 1.684734 GCTAGTTCGGTCCCTGGGA 60.685 63.158 12.53 12.53 0.00 4.37
8997 11648 1.049289 GCTAGTTCGGTCCCTGGGAT 61.049 60.000 20.40 3.87 32.73 3.85
8998 11649 1.497161 CTAGTTCGGTCCCTGGGATT 58.503 55.000 20.40 3.64 32.73 3.01
8999 11650 1.413077 CTAGTTCGGTCCCTGGGATTC 59.587 57.143 20.40 13.34 32.73 2.52
9000 11651 1.153429 GTTCGGTCCCTGGGATTCG 60.153 63.158 25.60 25.60 32.73 3.34
9001 11652 2.363975 TTCGGTCCCTGGGATTCGG 61.364 63.158 28.55 18.23 34.10 4.30
9002 11653 3.081409 CGGTCCCTGGGATTCGGT 61.081 66.667 20.40 0.00 32.73 4.69
9003 11654 2.666098 CGGTCCCTGGGATTCGGTT 61.666 63.158 20.40 0.00 32.73 4.44
9004 11655 1.689412 GGTCCCTGGGATTCGGTTT 59.311 57.895 20.40 0.00 32.73 3.27
9005 11656 0.679960 GGTCCCTGGGATTCGGTTTG 60.680 60.000 20.40 0.00 32.73 2.93
9006 11657 1.001393 TCCCTGGGATTCGGTTTGC 60.001 57.895 12.53 0.00 0.00 3.68
9007 11658 1.000896 CCCTGGGATTCGGTTTGCT 60.001 57.895 7.01 0.00 0.00 3.91
9008 11659 1.032114 CCCTGGGATTCGGTTTGCTC 61.032 60.000 7.01 0.00 0.00 4.26
9009 11660 0.322456 CCTGGGATTCGGTTTGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
9010 11661 0.804989 CTGGGATTCGGTTTGCTCAC 59.195 55.000 0.00 0.00 0.00 3.51
9011 11662 0.109532 TGGGATTCGGTTTGCTCACA 59.890 50.000 0.00 0.00 0.00 3.58
9012 11663 1.243902 GGGATTCGGTTTGCTCACAA 58.756 50.000 0.00 0.00 0.00 3.33
9013 11664 1.818674 GGGATTCGGTTTGCTCACAAT 59.181 47.619 0.00 0.00 35.21 2.71
9014 11665 2.159379 GGGATTCGGTTTGCTCACAATC 60.159 50.000 0.00 0.00 35.21 2.67
9015 11666 2.487762 GGATTCGGTTTGCTCACAATCA 59.512 45.455 0.00 0.00 35.21 2.57
9016 11667 3.492313 GATTCGGTTTGCTCACAATCAC 58.508 45.455 0.00 0.00 35.21 3.06
9017 11668 1.960417 TCGGTTTGCTCACAATCACA 58.040 45.000 0.00 0.00 35.21 3.58
9018 11669 1.601903 TCGGTTTGCTCACAATCACAC 59.398 47.619 0.00 0.00 35.21 3.82
9019 11670 1.660052 CGGTTTGCTCACAATCACACG 60.660 52.381 0.00 0.00 35.21 4.49
9020 11671 1.398595 GTTTGCTCACAATCACACGC 58.601 50.000 0.00 0.00 35.21 5.34
9021 11672 0.310543 TTTGCTCACAATCACACGCC 59.689 50.000 0.00 0.00 35.21 5.68
9022 11673 1.514678 TTGCTCACAATCACACGCCC 61.515 55.000 0.00 0.00 0.00 6.13
9023 11674 1.965930 GCTCACAATCACACGCCCA 60.966 57.895 0.00 0.00 0.00 5.36
9024 11675 1.868997 CTCACAATCACACGCCCAC 59.131 57.895 0.00 0.00 0.00 4.61
9026 11677 2.668212 ACAATCACACGCCCACGG 60.668 61.111 0.00 0.00 46.04 4.94
9027 11678 2.668212 CAATCACACGCCCACGGT 60.668 61.111 0.00 0.00 46.04 4.83
9028 11679 2.358247 AATCACACGCCCACGGTC 60.358 61.111 0.00 0.00 46.04 4.79
9029 11680 4.735132 ATCACACGCCCACGGTCG 62.735 66.667 0.00 0.00 46.04 4.79
9049 11700 3.785499 GCGGGTTCGGCGAAGTTC 61.785 66.667 24.41 14.96 36.79 3.01
9050 11701 3.475774 CGGGTTCGGCGAAGTTCG 61.476 66.667 24.41 20.87 43.89 3.95
9051 11702 2.356673 GGGTTCGGCGAAGTTCGT 60.357 61.111 24.41 0.00 42.81 3.85
9052 11703 2.378084 GGGTTCGGCGAAGTTCGTC 61.378 63.158 24.41 22.51 42.81 4.20
9053 11704 1.372623 GGTTCGGCGAAGTTCGTCT 60.373 57.895 25.74 0.00 43.21 4.18
9054 11705 0.942884 GGTTCGGCGAAGTTCGTCTT 60.943 55.000 25.74 0.00 43.21 3.01
9055 11706 0.857287 GTTCGGCGAAGTTCGTCTTT 59.143 50.000 25.74 0.00 43.21 2.52
9056 11707 1.259770 GTTCGGCGAAGTTCGTCTTTT 59.740 47.619 25.74 0.00 43.21 2.27
9057 11708 1.574134 TCGGCGAAGTTCGTCTTTTT 58.426 45.000 25.74 0.00 43.21 1.94
9076 11727 3.768468 TTTTTCAAACTCGGCGACTTT 57.232 38.095 4.99 7.14 0.00 2.66
9077 11728 3.768468 TTTTCAAACTCGGCGACTTTT 57.232 38.095 4.99 5.65 0.00 2.27
9078 11729 2.748461 TTCAAACTCGGCGACTTTTG 57.252 45.000 23.66 23.66 0.00 2.44
9079 11730 0.306533 TCAAACTCGGCGACTTTTGC 59.693 50.000 24.35 0.00 0.00 3.68
9080 11731 0.028770 CAAACTCGGCGACTTTTGCA 59.971 50.000 20.19 0.00 0.00 4.08
9081 11732 0.951558 AAACTCGGCGACTTTTGCAT 59.048 45.000 4.99 0.00 0.00 3.96
9082 11733 0.951558 AACTCGGCGACTTTTGCATT 59.048 45.000 4.99 0.00 0.00 3.56
9083 11734 1.803334 ACTCGGCGACTTTTGCATTA 58.197 45.000 4.99 0.00 0.00 1.90
9084 11735 2.147958 ACTCGGCGACTTTTGCATTAA 58.852 42.857 4.99 0.00 0.00 1.40
9085 11736 2.095919 ACTCGGCGACTTTTGCATTAAC 60.096 45.455 4.99 0.00 0.00 2.01
9086 11737 2.147958 TCGGCGACTTTTGCATTAACT 58.852 42.857 4.99 0.00 0.00 2.24
9087 11738 2.158841 TCGGCGACTTTTGCATTAACTC 59.841 45.455 4.99 0.00 0.00 3.01
9088 11739 2.505866 GGCGACTTTTGCATTAACTCG 58.494 47.619 0.00 0.00 0.00 4.18
9089 11740 2.505866 GCGACTTTTGCATTAACTCGG 58.494 47.619 0.00 0.00 0.00 4.63
9090 11741 2.505866 CGACTTTTGCATTAACTCGGC 58.494 47.619 0.00 0.00 0.00 5.54
9091 11742 2.159627 CGACTTTTGCATTAACTCGGCT 59.840 45.455 0.00 0.00 0.00 5.52
9092 11743 3.369756 CGACTTTTGCATTAACTCGGCTA 59.630 43.478 0.00 0.00 0.00 3.93
9093 11744 4.034048 CGACTTTTGCATTAACTCGGCTAT 59.966 41.667 0.00 0.00 0.00 2.97
9094 11745 5.447279 CGACTTTTGCATTAACTCGGCTATT 60.447 40.000 0.00 0.00 0.00 1.73
9095 11746 6.267496 ACTTTTGCATTAACTCGGCTATTT 57.733 33.333 0.00 0.00 0.00 1.40
9096 11747 6.687604 ACTTTTGCATTAACTCGGCTATTTT 58.312 32.000 0.00 0.00 0.00 1.82
9097 11748 7.151976 ACTTTTGCATTAACTCGGCTATTTTT 58.848 30.769 0.00 0.00 0.00 1.94
9098 11749 7.328493 ACTTTTGCATTAACTCGGCTATTTTTC 59.672 33.333 0.00 0.00 0.00 2.29
9099 11750 4.904116 TGCATTAACTCGGCTATTTTTCG 58.096 39.130 0.00 0.00 0.00 3.46
9100 11751 4.393680 TGCATTAACTCGGCTATTTTTCGT 59.606 37.500 0.00 0.00 0.00 3.85
9101 11752 4.962151 GCATTAACTCGGCTATTTTTCGTC 59.038 41.667 0.00 0.00 0.00 4.20
9102 11753 5.499047 CATTAACTCGGCTATTTTTCGTCC 58.501 41.667 0.00 0.00 0.00 4.79
9103 11754 2.754946 ACTCGGCTATTTTTCGTCCA 57.245 45.000 0.00 0.00 0.00 4.02
9104 11755 3.048337 ACTCGGCTATTTTTCGTCCAA 57.952 42.857 0.00 0.00 0.00 3.53
9105 11756 3.404899 ACTCGGCTATTTTTCGTCCAAA 58.595 40.909 0.00 0.00 0.00 3.28
9106 11757 4.007659 ACTCGGCTATTTTTCGTCCAAAT 58.992 39.130 0.00 0.00 0.00 2.32
9107 11758 4.457949 ACTCGGCTATTTTTCGTCCAAATT 59.542 37.500 0.00 0.00 0.00 1.82
9108 11759 5.048294 ACTCGGCTATTTTTCGTCCAAATTT 60.048 36.000 0.00 0.00 0.00 1.82
9109 11760 5.157781 TCGGCTATTTTTCGTCCAAATTTG 58.842 37.500 11.40 11.40 0.00 2.32
9110 11761 4.920927 CGGCTATTTTTCGTCCAAATTTGT 59.079 37.500 16.73 0.00 0.00 2.83
9111 11762 6.072618 TCGGCTATTTTTCGTCCAAATTTGTA 60.073 34.615 16.73 0.00 0.00 2.41
9112 11763 6.033091 CGGCTATTTTTCGTCCAAATTTGTAC 59.967 38.462 16.73 10.43 0.00 2.90
9113 11764 6.864165 GGCTATTTTTCGTCCAAATTTGTACA 59.136 34.615 16.73 0.00 0.00 2.90
9114 11765 7.382759 GGCTATTTTTCGTCCAAATTTGTACAA 59.617 33.333 16.73 3.59 0.00 2.41
9115 11766 8.756864 GCTATTTTTCGTCCAAATTTGTACAAA 58.243 29.630 22.58 22.58 34.46 2.83
9118 11769 9.762062 ATTTTTCGTCCAAATTTGTACAAAAAC 57.238 25.926 23.97 15.14 33.56 2.43
9119 11770 8.535690 TTTTCGTCCAAATTTGTACAAAAACT 57.464 26.923 23.97 9.69 33.56 2.66
9120 11771 8.535690 TTTCGTCCAAATTTGTACAAAAACTT 57.464 26.923 23.97 14.60 33.56 2.66
9121 11772 9.635520 TTTCGTCCAAATTTGTACAAAAACTTA 57.364 25.926 23.97 8.27 33.56 2.24
9122 11773 9.635520 TTCGTCCAAATTTGTACAAAAACTTAA 57.364 25.926 23.97 9.16 33.56 1.85
9123 11774 9.635520 TCGTCCAAATTTGTACAAAAACTTAAA 57.364 25.926 23.97 0.00 33.56 1.52
9164 11815 9.188588 ACTTAAAAACGAAATAAAAAGCCTAGC 57.811 29.630 0.00 0.00 0.00 3.42
9165 11816 8.523523 TTAAAAACGAAATAAAAAGCCTAGCC 57.476 30.769 0.00 0.00 0.00 3.93
9166 11817 5.715434 AAACGAAATAAAAAGCCTAGCCA 57.285 34.783 0.00 0.00 0.00 4.75
9167 11818 4.696899 ACGAAATAAAAAGCCTAGCCAC 57.303 40.909 0.00 0.00 0.00 5.01
9168 11819 3.126343 ACGAAATAAAAAGCCTAGCCACG 59.874 43.478 0.00 0.00 0.00 4.94
9169 11820 3.486875 CGAAATAAAAAGCCTAGCCACGG 60.487 47.826 0.00 0.00 0.00 4.94
9200 11851 4.547905 CGTCGTCGCCGCCTACAT 62.548 66.667 0.00 0.00 0.00 2.29
9201 11852 2.954868 GTCGTCGCCGCCTACATG 60.955 66.667 0.00 0.00 0.00 3.21
9202 11853 4.865761 TCGTCGCCGCCTACATGC 62.866 66.667 0.00 0.00 0.00 4.06
9207 11858 4.221422 GCCGCCTACATGCCGAGA 62.221 66.667 0.00 0.00 0.00 4.04
9208 11859 2.499205 CCGCCTACATGCCGAGAA 59.501 61.111 0.00 0.00 0.00 2.87
9209 11860 1.592669 CCGCCTACATGCCGAGAAG 60.593 63.158 0.00 0.00 0.00 2.85
9210 11861 2.240500 CGCCTACATGCCGAGAAGC 61.241 63.158 0.00 0.00 0.00 3.86
9211 11862 1.889573 GCCTACATGCCGAGAAGCC 60.890 63.158 0.00 0.00 0.00 4.35
9212 11863 1.826024 CCTACATGCCGAGAAGCCT 59.174 57.895 0.00 0.00 0.00 4.58
9213 11864 0.531532 CCTACATGCCGAGAAGCCTG 60.532 60.000 0.00 0.00 34.88 4.85
9214 11865 0.176680 CTACATGCCGAGAAGCCTGT 59.823 55.000 0.00 0.39 43.00 4.00
9215 11866 1.409064 CTACATGCCGAGAAGCCTGTA 59.591 52.381 0.00 2.48 41.17 2.74
9216 11867 0.176680 ACATGCCGAGAAGCCTGTAG 59.823 55.000 0.00 0.00 39.44 2.74
9217 11868 0.461548 CATGCCGAGAAGCCTGTAGA 59.538 55.000 0.00 0.00 0.00 2.59
9218 11869 1.134699 CATGCCGAGAAGCCTGTAGAA 60.135 52.381 0.00 0.00 0.00 2.10
9219 11870 0.532573 TGCCGAGAAGCCTGTAGAAG 59.467 55.000 0.00 0.00 0.00 2.85
9220 11871 0.808060 GCCGAGAAGCCTGTAGAAGC 60.808 60.000 0.00 0.00 0.00 3.86
9221 11872 0.526524 CCGAGAAGCCTGTAGAAGCG 60.527 60.000 0.00 0.00 0.00 4.68
9222 11873 0.526524 CGAGAAGCCTGTAGAAGCGG 60.527 60.000 0.00 0.00 0.00 5.52
9223 11874 0.818296 GAGAAGCCTGTAGAAGCGGA 59.182 55.000 0.00 0.00 0.00 5.54
9224 11875 1.410882 GAGAAGCCTGTAGAAGCGGAT 59.589 52.381 0.00 0.00 0.00 4.18
9225 11876 1.137872 AGAAGCCTGTAGAAGCGGATG 59.862 52.381 0.00 0.00 0.00 3.51
9226 11877 0.905357 AAGCCTGTAGAAGCGGATGT 59.095 50.000 0.00 0.00 0.00 3.06
9227 11878 1.776662 AGCCTGTAGAAGCGGATGTA 58.223 50.000 0.00 0.00 0.00 2.29
9228 11879 1.683917 AGCCTGTAGAAGCGGATGTAG 59.316 52.381 0.00 0.00 0.00 2.74
9229 11880 1.409427 GCCTGTAGAAGCGGATGTAGT 59.591 52.381 0.00 0.00 0.00 2.73
9230 11881 2.544069 GCCTGTAGAAGCGGATGTAGTC 60.544 54.545 0.00 0.00 0.00 2.59
9231 11882 2.287069 CCTGTAGAAGCGGATGTAGTCG 60.287 54.545 0.00 0.00 0.00 4.18
9236 11887 2.585247 GCGGATGTAGTCGCCACC 60.585 66.667 0.00 0.00 45.42 4.61
9237 11888 2.278596 CGGATGTAGTCGCCACCG 60.279 66.667 0.00 0.00 34.77 4.94
9238 11889 2.890371 GGATGTAGTCGCCACCGT 59.110 61.111 0.00 0.00 35.54 4.83
9239 11890 1.226888 GGATGTAGTCGCCACCGTC 60.227 63.158 0.00 0.00 35.54 4.79
9240 11891 1.585521 GATGTAGTCGCCACCGTCG 60.586 63.158 0.00 0.00 35.54 5.12
9241 11892 2.262471 GATGTAGTCGCCACCGTCGT 62.262 60.000 0.00 0.00 35.54 4.34
9242 11893 2.202401 GTAGTCGCCACCGTCGTC 60.202 66.667 0.00 0.00 35.54 4.20
9243 11894 3.792047 TAGTCGCCACCGTCGTCG 61.792 66.667 0.00 0.00 35.54 5.12
9277 11928 4.814294 CGGCGTCCCTACTGCACC 62.814 72.222 0.00 0.00 0.00 5.01
9278 11929 4.468689 GGCGTCCCTACTGCACCC 62.469 72.222 0.00 0.00 0.00 4.61
9279 11930 4.468689 GCGTCCCTACTGCACCCC 62.469 72.222 0.00 0.00 0.00 4.95
9280 11931 2.683933 CGTCCCTACTGCACCCCT 60.684 66.667 0.00 0.00 0.00 4.79
9281 11932 2.722201 CGTCCCTACTGCACCCCTC 61.722 68.421 0.00 0.00 0.00 4.30
9282 11933 1.612442 GTCCCTACTGCACCCCTCA 60.612 63.158 0.00 0.00 0.00 3.86
9283 11934 1.612442 TCCCTACTGCACCCCTCAC 60.612 63.158 0.00 0.00 0.00 3.51
9284 11935 2.670148 CCCTACTGCACCCCTCACC 61.670 68.421 0.00 0.00 0.00 4.02
9285 11936 2.670148 CCTACTGCACCCCTCACCC 61.670 68.421 0.00 0.00 0.00 4.61
9286 11937 3.000819 TACTGCACCCCTCACCCG 61.001 66.667 0.00 0.00 0.00 5.28
9324 11975 4.899239 GGCATGGCCTCGACCTCG 62.899 72.222 8.35 0.00 46.69 4.63
9325 11976 4.148825 GCATGGCCTCGACCTCGT 62.149 66.667 3.32 0.00 40.80 4.18
9326 11977 2.105128 CATGGCCTCGACCTCGTC 59.895 66.667 3.32 0.00 40.80 4.20
9335 11986 4.127726 GACCTCGTCGTCGTTGTC 57.872 61.111 1.33 6.48 38.33 3.18
9336 11987 1.791283 GACCTCGTCGTCGTTGTCG 60.791 63.158 1.33 0.00 38.33 4.35
9337 11988 2.162921 GACCTCGTCGTCGTTGTCGA 62.163 60.000 1.33 0.00 44.12 4.20
9353 12004 2.675767 TCGATGACGATAACGCTACC 57.324 50.000 0.00 0.00 43.81 3.18
9354 12005 1.265095 TCGATGACGATAACGCTACCC 59.735 52.381 0.00 0.00 43.81 3.69
9355 12006 1.266175 CGATGACGATAACGCTACCCT 59.734 52.381 0.00 0.00 43.96 4.34
9356 12007 2.287427 CGATGACGATAACGCTACCCTT 60.287 50.000 0.00 0.00 43.96 3.95
9357 12008 2.857592 TGACGATAACGCTACCCTTC 57.142 50.000 0.00 0.00 43.96 3.46
9358 12009 2.372264 TGACGATAACGCTACCCTTCT 58.628 47.619 0.00 0.00 43.96 2.85
9359 12010 2.357009 TGACGATAACGCTACCCTTCTC 59.643 50.000 0.00 0.00 43.96 2.87
9360 12011 1.332997 ACGATAACGCTACCCTTCTCG 59.667 52.381 0.00 0.00 43.96 4.04
9361 12012 1.334779 CGATAACGCTACCCTTCTCGG 60.335 57.143 0.00 0.00 0.00 4.63
9362 12013 0.388294 ATAACGCTACCCTTCTCGGC 59.612 55.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.106351 TGAAAAGCGCCCAGAAGCAA 61.106 50.000 2.29 0.00 35.48 3.91
74 76 7.094205 CCAAATGTCCTTGAATTTAGCAGTACT 60.094 37.037 0.00 0.00 0.00 2.73
297 306 8.050316 AGGAGGGATATCAATTAACATGAAGT 57.950 34.615 4.83 0.00 0.00 3.01
312 321 5.367618 AGATCTCAAAGGAGGAGGGATAT 57.632 43.478 0.00 0.00 41.69 1.63
331 340 8.879427 AAGGTGTTAACATAAAGCCTTAAGAT 57.121 30.769 20.26 2.70 33.63 2.40
422 432 6.054941 TGCTCAATAGTGAACTTGTTTCTCA 58.945 36.000 0.00 0.00 34.97 3.27
538 552 2.025155 AGATAGCATGTCGTCGAAGGT 58.975 47.619 0.00 0.00 0.00 3.50
733 758 6.265422 TCGACTTCATAGATAAAGCCATCAGA 59.735 38.462 0.00 0.00 0.00 3.27
751 776 2.853003 GGAAAGACATACGCTCGACTTC 59.147 50.000 0.00 0.00 0.00 3.01
784 809 4.675114 CCTGTACTTTTCGTGCAAATTCAC 59.325 41.667 0.00 0.00 37.79 3.18
799 824 1.542915 ACACGCACGATACCTGTACTT 59.457 47.619 0.00 0.00 0.00 2.24
842 867 0.669318 TTTCGACGGTGCCTCATCAC 60.669 55.000 0.00 0.00 36.28 3.06
905 1141 0.179197 GAATCTCGCTGTGTCGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
1023 1260 1.728672 CGCCGGAGAGAAGTAGTCC 59.271 63.158 5.05 0.00 0.00 3.85
1282 1525 0.524862 GAAAGCCGACTCACCTCGTA 59.475 55.000 0.00 0.00 31.35 3.43
1357 1600 0.676782 AAAGCAATACGAAGCGCCCT 60.677 50.000 2.29 0.00 35.48 5.19
1373 1616 7.540745 CCTCACGAATAACCAAATTAACCAAAG 59.459 37.037 0.00 0.00 0.00 2.77
1405 1652 1.669502 GCAATTCAGAAATGCCGCACA 60.670 47.619 11.66 0.00 0.00 4.57
1471 1718 1.002033 CTATACACGCCCCTGTCGTAC 60.002 57.143 0.00 0.00 38.19 3.67
1750 1997 3.569250 ACCAAACAGTCACAACACAAC 57.431 42.857 0.00 0.00 0.00 3.32
1795 2058 5.512942 TCCCATCTCTAACATCACCAAAA 57.487 39.130 0.00 0.00 0.00 2.44
2096 2453 0.178981 ACTGCAGGTCCAAGCACAAT 60.179 50.000 19.93 0.00 36.62 2.71
2625 3354 5.748152 GCTGCAATCTCTGAGAAGTTACTAG 59.252 44.000 12.00 5.57 0.00 2.57
3125 3854 7.027778 AGAAACGTCTTGCTTGATAAAAGTT 57.972 32.000 0.00 0.00 0.00 2.66
3367 4096 2.126882 ACCATGCTGGCATAGGTAGAA 58.873 47.619 19.90 0.00 42.67 2.10
3451 4180 3.503748 ACTCGAGAAAATCAAAGCCAAGG 59.496 43.478 21.68 0.00 0.00 3.61
3617 4346 5.065988 CCTTTTCTGAACTCGACTTTTCCAA 59.934 40.000 0.00 0.00 0.00 3.53
3955 4684 4.223923 CCTCCAGTTATCAGTCCAAGAAGT 59.776 45.833 0.00 0.00 0.00 3.01
4321 5050 7.602265 TCAACAAATGTCATCTTCATCGAAGTA 59.398 33.333 3.81 0.00 40.24 2.24
4395 5124 2.576648 AGTACCCAAGGTGGAGGATTTC 59.423 50.000 0.00 0.00 40.96 2.17
4403 5132 1.562672 CCTCCCAGTACCCAAGGTGG 61.563 65.000 0.00 0.00 36.19 4.61
4882 6045 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4883 6046 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4885 6048 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4933 6096 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4934 6097 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
4935 6098 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
4936 6099 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
5267 6456 4.082125 GGGTCTTCAACATCCACTTTGAT 58.918 43.478 0.00 0.00 31.87 2.57
5595 7828 4.792521 TTTGCATATTACCGGTTGCTTT 57.207 36.364 25.08 5.33 36.10 3.51
5647 7882 3.554524 CATGTAAAACCAGTGCTCAACG 58.445 45.455 0.00 0.00 0.00 4.10
5708 7957 6.433847 TGAGGGTCTCAGAAACAAAATCTA 57.566 37.500 0.00 0.00 35.39 1.98
5798 8066 9.520204 CAAATAATCAGCACGGATTCTTATTTT 57.480 29.630 0.00 0.00 38.41 1.82
6262 8530 4.938832 CCAGTATTTACAACAATCACGGGA 59.061 41.667 0.00 0.00 0.00 5.14
6265 8533 7.095397 TGACTTCCAGTATTTACAACAATCACG 60.095 37.037 0.00 0.00 0.00 4.35
6320 8588 6.751514 AGATAGTATCTGCTGATAAGACGG 57.248 41.667 12.00 0.00 38.44 4.79
6392 8660 4.227300 TGAAGCACCAAGTATTAGGTCCAT 59.773 41.667 0.00 0.00 35.52 3.41
6406 8674 2.930950 ACTAAGCAAACTGAAGCACCA 58.069 42.857 0.00 0.00 0.00 4.17
6407 8675 4.142600 CCATACTAAGCAAACTGAAGCACC 60.143 45.833 0.00 0.00 0.00 5.01
6579 8848 6.362210 TCAGGAAAAAGCAAAAATTTCAGC 57.638 33.333 6.69 6.69 35.32 4.26
7107 9376 7.469870 GCACTACAGATGTCTGAATCTACAGAT 60.470 40.741 16.41 0.00 46.36 2.90
7202 9471 3.330126 TTAGAGGATCGGGATGGAAGT 57.670 47.619 0.00 0.00 42.67 3.01
7252 9521 3.684788 GTCGGCTGTGAGAATACATTGTT 59.315 43.478 0.00 0.00 0.00 2.83
7253 9522 3.262420 GTCGGCTGTGAGAATACATTGT 58.738 45.455 0.00 0.00 0.00 2.71
7254 9523 3.261580 TGTCGGCTGTGAGAATACATTG 58.738 45.455 0.00 0.00 0.00 2.82
7555 9833 1.901833 GAATGATGGTTTGCTTGGGGT 59.098 47.619 0.00 0.00 0.00 4.95
7625 9903 1.899814 TGTCCCAGTCACCAGTATCAC 59.100 52.381 0.00 0.00 0.00 3.06
7692 10249 4.829492 CCCATATCATTTCTGAAAGGGGTC 59.171 45.833 14.01 0.00 37.24 4.46
7782 10339 1.027357 CATGAAAGCCAGAATCCCGG 58.973 55.000 0.00 0.00 0.00 5.73
7784 10341 1.477553 TGCATGAAAGCCAGAATCCC 58.522 50.000 0.00 0.00 0.00 3.85
7919 10476 4.961637 TGGAAGCACCATCCATCG 57.038 55.556 0.00 0.00 44.64 3.84
8044 10610 3.256704 CCCTATGGGTATGGGCTTTAGA 58.743 50.000 0.00 0.00 38.25 2.10
8539 11127 3.385115 ACTACTCCCTCCGATCCAAAAT 58.615 45.455 0.00 0.00 0.00 1.82
8548 11136 6.489361 ACATAAACAGTATACTACTCCCTCCG 59.511 42.308 4.74 0.00 36.76 4.63
8564 11152 5.095691 GGTGTGTCAGACAACATAAACAG 57.904 43.478 4.32 0.00 42.49 3.16
8585 11173 6.201425 CCTCAATGTCTCAAAACAAATTGTGG 59.799 38.462 0.00 0.00 31.67 4.17
8623 11211 3.259625 TGATGGACAAATGACACCGTAGA 59.740 43.478 0.00 0.00 0.00 2.59
8624 11212 3.595173 TGATGGACAAATGACACCGTAG 58.405 45.455 0.00 0.00 0.00 3.51
8677 11265 3.322828 ACCTTGCAGCTTGAACAATGAAT 59.677 39.130 0.00 0.00 0.00 2.57
8707 11295 8.132362 AGACATCTTTCAGTATAATCACGAGAC 58.868 37.037 0.00 0.00 0.00 3.36
8708 11296 8.226819 AGACATCTTTCAGTATAATCACGAGA 57.773 34.615 0.00 0.00 0.00 4.04
8709 11297 7.593273 GGAGACATCTTTCAGTATAATCACGAG 59.407 40.741 0.00 0.00 0.00 4.18
8710 11298 7.426410 GGAGACATCTTTCAGTATAATCACGA 58.574 38.462 0.00 0.00 0.00 4.35
8711 11299 6.642950 GGGAGACATCTTTCAGTATAATCACG 59.357 42.308 0.00 0.00 0.00 4.35
8805 11432 1.302033 CTGGCCGGCATATCCAGTC 60.302 63.158 30.85 7.78 41.76 3.51
8817 11468 3.390183 TATGTGCTGAGGCTGGCCG 62.390 63.158 5.93 0.00 41.95 6.13
8818 11469 1.821332 GTATGTGCTGAGGCTGGCC 60.821 63.158 3.00 3.00 39.59 5.36
8819 11470 2.176273 CGTATGTGCTGAGGCTGGC 61.176 63.158 0.00 0.00 39.59 4.85
8820 11471 0.459899 TACGTATGTGCTGAGGCTGG 59.540 55.000 0.00 0.00 39.59 4.85
8821 11472 2.130395 CATACGTATGTGCTGAGGCTG 58.870 52.381 24.46 0.00 39.59 4.85
8822 11473 1.757118 ACATACGTATGTGCTGAGGCT 59.243 47.619 34.29 11.40 44.66 4.58
8823 11474 2.225068 ACATACGTATGTGCTGAGGC 57.775 50.000 34.29 0.00 44.66 4.70
8824 11475 2.866156 CCAACATACGTATGTGCTGAGG 59.134 50.000 35.14 26.45 45.55 3.86
8825 11476 3.521560 ACCAACATACGTATGTGCTGAG 58.478 45.455 35.14 24.80 45.55 3.35
8826 11477 3.194755 AGACCAACATACGTATGTGCTGA 59.805 43.478 35.14 0.00 45.55 4.26
8827 11478 3.521560 AGACCAACATACGTATGTGCTG 58.478 45.455 35.14 29.12 45.55 4.41
8828 11479 3.887621 AGACCAACATACGTATGTGCT 57.112 42.857 35.14 26.14 45.55 4.40
8829 11480 3.800506 GGTAGACCAACATACGTATGTGC 59.199 47.826 35.14 24.74 45.55 4.57
8830 11481 5.258456 AGGTAGACCAACATACGTATGTG 57.742 43.478 35.14 26.63 45.55 3.21
8832 11483 5.657474 ACAAGGTAGACCAACATACGTATG 58.343 41.667 29.48 29.48 38.89 2.39
8833 11484 5.163478 GGACAAGGTAGACCAACATACGTAT 60.163 44.000 1.14 1.14 38.89 3.06
8834 11485 4.158394 GGACAAGGTAGACCAACATACGTA 59.842 45.833 0.00 0.00 38.89 3.57
8835 11486 3.056322 GGACAAGGTAGACCAACATACGT 60.056 47.826 0.66 0.00 38.89 3.57
8836 11487 3.056393 TGGACAAGGTAGACCAACATACG 60.056 47.826 0.66 0.00 38.89 3.06
8837 11488 4.504858 CTGGACAAGGTAGACCAACATAC 58.495 47.826 0.66 0.00 38.89 2.39
8838 11489 3.055385 GCTGGACAAGGTAGACCAACATA 60.055 47.826 0.66 0.00 38.89 2.29
8862 11513 6.238429 CCAACAATTTCAAATGGTGTTCCTTG 60.238 38.462 0.00 0.00 32.29 3.61
8863 11514 5.821995 CCAACAATTTCAAATGGTGTTCCTT 59.178 36.000 0.00 0.00 32.29 3.36
8870 11521 4.261994 CGAGTCCCAACAATTTCAAATGGT 60.262 41.667 0.00 0.00 0.00 3.55
8871 11522 4.236935 CGAGTCCCAACAATTTCAAATGG 58.763 43.478 0.00 0.00 0.00 3.16
8872 11523 3.674753 GCGAGTCCCAACAATTTCAAATG 59.325 43.478 0.00 0.00 0.00 2.32
8912 11563 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
8939 11590 3.747976 CTTTTTCGGCGCCTGGGG 61.748 66.667 26.68 9.07 0.00 4.96
8940 11591 2.671619 TCTTTTTCGGCGCCTGGG 60.672 61.111 26.68 9.50 0.00 4.45
8941 11592 2.870372 CTCTTTTTCGGCGCCTGG 59.130 61.111 26.68 10.37 0.00 4.45
8942 11593 2.176792 GCTCTTTTTCGGCGCCTG 59.823 61.111 26.68 18.23 0.00 4.85
8943 11594 3.423154 CGCTCTTTTTCGGCGCCT 61.423 61.111 26.68 0.00 42.28 5.52
8948 11599 2.690778 CCAGGGCGCTCTTTTTCGG 61.691 63.158 7.32 0.04 0.00 4.30
8949 11600 2.690778 CCCAGGGCGCTCTTTTTCG 61.691 63.158 7.32 0.00 0.00 3.46
8950 11601 2.343426 CCCCAGGGCGCTCTTTTTC 61.343 63.158 7.32 0.00 0.00 2.29
8951 11602 2.283173 CCCCAGGGCGCTCTTTTT 60.283 61.111 7.32 0.00 0.00 1.94
8974 11625 4.867599 GGGACCGAACTAGCGCCG 62.868 72.222 2.29 0.00 0.00 6.46
8975 11626 3.459063 AGGGACCGAACTAGCGCC 61.459 66.667 2.29 0.00 0.00 6.53
8976 11627 2.202756 CAGGGACCGAACTAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
8977 11628 2.494918 CCAGGGACCGAACTAGCG 59.505 66.667 0.00 0.00 0.00 4.26
8978 11629 1.049289 ATCCCAGGGACCGAACTAGC 61.049 60.000 11.70 0.00 32.98 3.42
8979 11630 1.413077 GAATCCCAGGGACCGAACTAG 59.587 57.143 11.70 0.00 32.98 2.57
8980 11631 1.492764 GAATCCCAGGGACCGAACTA 58.507 55.000 11.70 0.00 32.98 2.24
8981 11632 1.614241 CGAATCCCAGGGACCGAACT 61.614 60.000 22.00 0.00 34.56 3.01
8982 11633 1.153429 CGAATCCCAGGGACCGAAC 60.153 63.158 22.00 7.48 34.56 3.95
8983 11634 2.363975 CCGAATCCCAGGGACCGAA 61.364 63.158 26.17 0.00 34.56 4.30
8984 11635 2.762459 CCGAATCCCAGGGACCGA 60.762 66.667 26.17 0.34 34.56 4.69
8985 11636 2.193087 AAACCGAATCCCAGGGACCG 62.193 60.000 11.70 17.29 32.98 4.79
8986 11637 0.679960 CAAACCGAATCCCAGGGACC 60.680 60.000 11.70 4.85 32.98 4.46
8987 11638 1.313091 GCAAACCGAATCCCAGGGAC 61.313 60.000 11.70 0.00 32.98 4.46
8988 11639 1.001393 GCAAACCGAATCCCAGGGA 60.001 57.895 11.90 11.90 35.55 4.20
8989 11640 1.000896 AGCAAACCGAATCCCAGGG 60.001 57.895 0.00 0.00 0.00 4.45
8990 11641 0.322456 TGAGCAAACCGAATCCCAGG 60.322 55.000 0.00 0.00 0.00 4.45
8991 11642 0.804989 GTGAGCAAACCGAATCCCAG 59.195 55.000 0.00 0.00 0.00 4.45
8992 11643 0.109532 TGTGAGCAAACCGAATCCCA 59.890 50.000 0.00 0.00 0.00 4.37
8993 11644 1.243902 TTGTGAGCAAACCGAATCCC 58.756 50.000 0.00 0.00 0.00 3.85
8994 11645 2.487762 TGATTGTGAGCAAACCGAATCC 59.512 45.455 0.00 0.00 38.21 3.01
8995 11646 3.058293 TGTGATTGTGAGCAAACCGAATC 60.058 43.478 0.00 0.00 38.21 2.52
8996 11647 2.884012 TGTGATTGTGAGCAAACCGAAT 59.116 40.909 0.00 0.00 38.21 3.34
8997 11648 2.032799 GTGTGATTGTGAGCAAACCGAA 59.967 45.455 0.00 0.00 38.21 4.30
8998 11649 1.601903 GTGTGATTGTGAGCAAACCGA 59.398 47.619 0.00 0.00 38.21 4.69
8999 11650 1.660052 CGTGTGATTGTGAGCAAACCG 60.660 52.381 0.00 0.00 38.21 4.44
9000 11651 1.925946 GCGTGTGATTGTGAGCAAACC 60.926 52.381 0.00 0.00 38.21 3.27
9001 11652 1.398595 GCGTGTGATTGTGAGCAAAC 58.601 50.000 0.00 0.00 38.21 2.93
9002 11653 0.310543 GGCGTGTGATTGTGAGCAAA 59.689 50.000 0.00 0.00 38.21 3.68
9003 11654 1.514678 GGGCGTGTGATTGTGAGCAA 61.515 55.000 0.00 0.00 39.16 3.91
9004 11655 1.965930 GGGCGTGTGATTGTGAGCA 60.966 57.895 0.00 0.00 0.00 4.26
9005 11656 1.965930 TGGGCGTGTGATTGTGAGC 60.966 57.895 0.00 0.00 0.00 4.26
9006 11657 1.868997 GTGGGCGTGTGATTGTGAG 59.131 57.895 0.00 0.00 0.00 3.51
9007 11658 1.958715 CGTGGGCGTGTGATTGTGA 60.959 57.895 0.00 0.00 0.00 3.58
9008 11659 2.555782 CGTGGGCGTGTGATTGTG 59.444 61.111 0.00 0.00 0.00 3.33
9009 11660 2.668212 CCGTGGGCGTGTGATTGT 60.668 61.111 0.00 0.00 36.15 2.71
9010 11661 2.668212 ACCGTGGGCGTGTGATTG 60.668 61.111 0.00 0.00 36.15 2.67
9011 11662 2.358247 GACCGTGGGCGTGTGATT 60.358 61.111 0.00 0.00 36.15 2.57
9012 11663 4.735132 CGACCGTGGGCGTGTGAT 62.735 66.667 5.84 0.00 36.15 3.06
9032 11683 3.785499 GAACTTCGCCGAACCCGC 61.785 66.667 0.00 0.00 0.00 6.13
9033 11684 3.475774 CGAACTTCGCCGAACCCG 61.476 66.667 0.00 0.00 31.14 5.28
9034 11685 2.356673 ACGAACTTCGCCGAACCC 60.357 61.111 11.15 0.00 45.12 4.11
9035 11686 0.942884 AAGACGAACTTCGCCGAACC 60.943 55.000 11.15 0.00 45.12 3.62
9036 11687 0.857287 AAAGACGAACTTCGCCGAAC 59.143 50.000 11.15 0.00 45.12 3.95
9037 11688 1.574134 AAAAGACGAACTTCGCCGAA 58.426 45.000 11.15 0.00 45.12 4.30
9038 11689 1.574134 AAAAAGACGAACTTCGCCGA 58.426 45.000 11.15 0.00 45.12 5.54
9056 11707 3.768468 AAAGTCGCCGAGTTTGAAAAA 57.232 38.095 18.40 0.00 34.41 1.94
9057 11708 3.430931 CAAAAGTCGCCGAGTTTGAAAA 58.569 40.909 19.65 0.00 35.66 2.29
9058 11709 2.793237 GCAAAAGTCGCCGAGTTTGAAA 60.793 45.455 19.65 0.00 35.66 2.69
9059 11710 1.268335 GCAAAAGTCGCCGAGTTTGAA 60.268 47.619 19.65 0.00 35.66 2.69
9060 11711 0.306533 GCAAAAGTCGCCGAGTTTGA 59.693 50.000 19.65 0.00 35.66 2.69
9061 11712 0.028770 TGCAAAAGTCGCCGAGTTTG 59.971 50.000 19.65 17.23 35.66 2.93
9062 11713 0.951558 ATGCAAAAGTCGCCGAGTTT 59.048 45.000 13.88 13.88 36.85 2.66
9063 11714 0.951558 AATGCAAAAGTCGCCGAGTT 59.048 45.000 0.33 0.33 0.00 3.01
9064 11715 1.803334 TAATGCAAAAGTCGCCGAGT 58.197 45.000 0.00 0.00 0.00 4.18
9065 11716 2.159627 AGTTAATGCAAAAGTCGCCGAG 59.840 45.455 0.00 0.00 0.00 4.63
9066 11717 2.147958 AGTTAATGCAAAAGTCGCCGA 58.852 42.857 0.00 0.00 0.00 5.54
9067 11718 2.505866 GAGTTAATGCAAAAGTCGCCG 58.494 47.619 0.00 0.00 0.00 6.46
9068 11719 2.505866 CGAGTTAATGCAAAAGTCGCC 58.494 47.619 21.91 0.41 41.33 5.54
9069 11720 2.505866 CCGAGTTAATGCAAAAGTCGC 58.494 47.619 25.52 5.35 44.55 5.19
9070 11721 2.159627 AGCCGAGTTAATGCAAAAGTCG 59.840 45.455 24.62 24.62 45.16 4.18
9071 11722 3.831715 AGCCGAGTTAATGCAAAAGTC 57.168 42.857 9.05 9.05 0.00 3.01
9072 11723 5.897377 AATAGCCGAGTTAATGCAAAAGT 57.103 34.783 0.00 0.00 0.00 2.66
9073 11724 7.461416 CGAAAAATAGCCGAGTTAATGCAAAAG 60.461 37.037 0.00 0.00 0.00 2.27
9074 11725 6.306837 CGAAAAATAGCCGAGTTAATGCAAAA 59.693 34.615 0.00 0.00 0.00 2.44
9075 11726 5.797934 CGAAAAATAGCCGAGTTAATGCAAA 59.202 36.000 0.00 0.00 0.00 3.68
9076 11727 5.106475 ACGAAAAATAGCCGAGTTAATGCAA 60.106 36.000 0.00 0.00 0.00 4.08
9077 11728 4.393680 ACGAAAAATAGCCGAGTTAATGCA 59.606 37.500 0.00 0.00 0.00 3.96
9078 11729 4.905269 ACGAAAAATAGCCGAGTTAATGC 58.095 39.130 0.00 0.00 0.00 3.56
9079 11730 5.064198 TGGACGAAAAATAGCCGAGTTAATG 59.936 40.000 0.00 0.00 0.00 1.90
9080 11731 5.180271 TGGACGAAAAATAGCCGAGTTAAT 58.820 37.500 0.00 0.00 0.00 1.40
9081 11732 4.567971 TGGACGAAAAATAGCCGAGTTAA 58.432 39.130 0.00 0.00 0.00 2.01
9082 11733 4.191033 TGGACGAAAAATAGCCGAGTTA 57.809 40.909 0.00 0.00 0.00 2.24
9083 11734 3.048337 TGGACGAAAAATAGCCGAGTT 57.952 42.857 0.00 0.00 0.00 3.01
9084 11735 2.754946 TGGACGAAAAATAGCCGAGT 57.245 45.000 0.00 0.00 0.00 4.18
9085 11736 4.616181 ATTTGGACGAAAAATAGCCGAG 57.384 40.909 0.00 0.00 0.00 4.63
9086 11737 5.157781 CAAATTTGGACGAAAAATAGCCGA 58.842 37.500 10.49 0.00 0.00 5.54
9087 11738 4.920927 ACAAATTTGGACGAAAAATAGCCG 59.079 37.500 21.74 0.00 0.00 5.52
9088 11739 6.864165 TGTACAAATTTGGACGAAAAATAGCC 59.136 34.615 24.93 1.30 45.13 3.93
9089 11740 7.861176 TGTACAAATTTGGACGAAAAATAGC 57.139 32.000 24.93 1.78 45.13 2.97
9096 11747 9.635520 TTAAGTTTTTGTACAAATTTGGACGAA 57.364 25.926 26.15 26.15 45.13 3.85
9097 11748 9.635520 TTTAAGTTTTTGTACAAATTTGGACGA 57.364 25.926 24.93 21.68 45.13 4.20
9138 11789 9.188588 GCTAGGCTTTTTATTTCGTTTTTAAGT 57.811 29.630 0.00 0.00 0.00 2.24
9139 11790 8.644619 GGCTAGGCTTTTTATTTCGTTTTTAAG 58.355 33.333 9.46 0.00 0.00 1.85
9140 11791 8.142551 TGGCTAGGCTTTTTATTTCGTTTTTAA 58.857 29.630 18.18 0.00 0.00 1.52
9141 11792 7.595875 GTGGCTAGGCTTTTTATTTCGTTTTTA 59.404 33.333 18.18 0.00 0.00 1.52
9142 11793 6.422701 GTGGCTAGGCTTTTTATTTCGTTTTT 59.577 34.615 18.18 0.00 0.00 1.94
9143 11794 5.924254 GTGGCTAGGCTTTTTATTTCGTTTT 59.076 36.000 18.18 0.00 0.00 2.43
9144 11795 5.466819 GTGGCTAGGCTTTTTATTTCGTTT 58.533 37.500 18.18 0.00 0.00 3.60
9145 11796 4.379082 CGTGGCTAGGCTTTTTATTTCGTT 60.379 41.667 18.18 0.00 0.00 3.85
9146 11797 3.126343 CGTGGCTAGGCTTTTTATTTCGT 59.874 43.478 18.18 0.00 0.00 3.85
9147 11798 3.486875 CCGTGGCTAGGCTTTTTATTTCG 60.487 47.826 18.18 7.81 0.00 3.46
9148 11799 4.028852 CCGTGGCTAGGCTTTTTATTTC 57.971 45.455 18.18 0.00 0.00 2.17
9193 11844 1.889573 GGCTTCTCGGCATGTAGGC 60.890 63.158 0.00 0.00 38.25 3.93
9194 11845 0.531532 CAGGCTTCTCGGCATGTAGG 60.532 60.000 0.00 0.00 38.88 3.18
9195 11846 2.983433 CAGGCTTCTCGGCATGTAG 58.017 57.895 0.00 0.00 38.88 2.74
9199 11850 1.137872 CTTCTACAGGCTTCTCGGCAT 59.862 52.381 0.00 0.00 41.46 4.40
9200 11851 0.532573 CTTCTACAGGCTTCTCGGCA 59.467 55.000 0.00 0.00 41.46 5.69
9201 11852 0.808060 GCTTCTACAGGCTTCTCGGC 60.808 60.000 0.00 0.00 38.75 5.54
9202 11853 0.526524 CGCTTCTACAGGCTTCTCGG 60.527 60.000 0.00 0.00 0.00 4.63
9203 11854 0.526524 CCGCTTCTACAGGCTTCTCG 60.527 60.000 0.00 0.00 0.00 4.04
9204 11855 0.818296 TCCGCTTCTACAGGCTTCTC 59.182 55.000 0.00 0.00 0.00 2.87
9205 11856 1.137872 CATCCGCTTCTACAGGCTTCT 59.862 52.381 0.00 0.00 0.00 2.85
9206 11857 1.134670 ACATCCGCTTCTACAGGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
9207 11858 0.905357 ACATCCGCTTCTACAGGCTT 59.095 50.000 0.00 0.00 0.00 4.35
9208 11859 1.683917 CTACATCCGCTTCTACAGGCT 59.316 52.381 0.00 0.00 0.00 4.58
9209 11860 1.409427 ACTACATCCGCTTCTACAGGC 59.591 52.381 0.00 0.00 0.00 4.85
9210 11861 2.287069 CGACTACATCCGCTTCTACAGG 60.287 54.545 0.00 0.00 0.00 4.00
9211 11862 2.855187 GCGACTACATCCGCTTCTACAG 60.855 54.545 0.00 0.00 46.96 2.74
9212 11863 1.065102 GCGACTACATCCGCTTCTACA 59.935 52.381 0.00 0.00 46.96 2.74
9213 11864 1.756367 GCGACTACATCCGCTTCTAC 58.244 55.000 0.00 0.00 46.96 2.59
9220 11871 2.278596 CGGTGGCGACTACATCCG 60.279 66.667 0.00 0.00 0.00 4.18
9221 11872 1.226888 GACGGTGGCGACTACATCC 60.227 63.158 0.00 0.00 0.00 3.51
9222 11873 1.585521 CGACGGTGGCGACTACATC 60.586 63.158 0.00 0.00 0.00 3.06
9223 11874 2.262471 GACGACGGTGGCGACTACAT 62.262 60.000 0.00 0.00 0.00 2.29
9224 11875 2.969806 GACGACGGTGGCGACTACA 61.970 63.158 0.00 0.00 0.00 2.74
9225 11876 2.202401 GACGACGGTGGCGACTAC 60.202 66.667 0.00 0.00 0.00 2.73
9226 11877 3.792047 CGACGACGGTGGCGACTA 61.792 66.667 0.00 0.00 35.72 2.59
9260 11911 4.814294 GGTGCAGTAGGGACGCCG 62.814 72.222 0.00 0.00 39.01 6.46
9261 11912 4.468689 GGGTGCAGTAGGGACGCC 62.469 72.222 0.00 0.00 43.62 5.68
9263 11914 2.683933 AGGGGTGCAGTAGGGACG 60.684 66.667 0.00 0.00 39.01 4.79
9264 11915 1.612442 TGAGGGGTGCAGTAGGGAC 60.612 63.158 0.00 0.00 37.06 4.46
9265 11916 1.612442 GTGAGGGGTGCAGTAGGGA 60.612 63.158 0.00 0.00 0.00 4.20
9266 11917 2.670148 GGTGAGGGGTGCAGTAGGG 61.670 68.421 0.00 0.00 0.00 3.53
9267 11918 2.670148 GGGTGAGGGGTGCAGTAGG 61.670 68.421 0.00 0.00 0.00 3.18
9268 11919 2.990479 GGGTGAGGGGTGCAGTAG 59.010 66.667 0.00 0.00 0.00 2.57
9269 11920 3.000819 CGGGTGAGGGGTGCAGTA 61.001 66.667 0.00 0.00 0.00 2.74
9308 11959 4.148825 ACGAGGTCGAGGCCATGC 62.149 66.667 5.01 0.00 43.02 4.06
9309 11960 2.105128 GACGAGGTCGAGGCCATG 59.895 66.667 5.01 0.00 43.02 3.66
9318 11969 1.791283 CGACAACGACGACGAGGTC 60.791 63.158 15.32 17.66 42.66 3.85
9319 11970 2.246739 TCGACAACGACGACGAGGT 61.247 57.895 15.32 11.05 43.81 3.85
9320 11971 2.552768 TCGACAACGACGACGAGG 59.447 61.111 15.32 7.78 43.81 4.63
9335 11986 1.266175 AGGGTAGCGTTATCGTCATCG 59.734 52.381 0.00 0.00 39.49 3.84
9336 11987 3.004524 AGAAGGGTAGCGTTATCGTCATC 59.995 47.826 0.00 0.00 39.49 2.92
9337 11988 2.957006 AGAAGGGTAGCGTTATCGTCAT 59.043 45.455 0.00 0.00 39.49 3.06
9338 11989 2.357009 GAGAAGGGTAGCGTTATCGTCA 59.643 50.000 6.27 0.00 39.49 4.35
9339 11990 2.601741 CGAGAAGGGTAGCGTTATCGTC 60.602 54.545 26.89 10.62 39.49 4.20
9340 11991 1.332997 CGAGAAGGGTAGCGTTATCGT 59.667 52.381 26.89 4.11 39.49 3.73
9341 11992 1.334779 CCGAGAAGGGTAGCGTTATCG 60.335 57.143 27.77 27.77 37.19 2.92
9342 11993 1.602416 GCCGAGAAGGGTAGCGTTATC 60.602 57.143 10.98 10.98 41.48 1.75
9343 11994 0.388294 GCCGAGAAGGGTAGCGTTAT 59.612 55.000 0.00 0.00 41.48 1.89
9344 11995 1.811860 GCCGAGAAGGGTAGCGTTA 59.188 57.895 0.00 0.00 41.48 3.18
9345 11996 2.577593 GCCGAGAAGGGTAGCGTT 59.422 61.111 0.00 0.00 41.48 4.84
9346 11997 3.823330 CGCCGAGAAGGGTAGCGT 61.823 66.667 0.00 0.00 41.78 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.