Multiple sequence alignment - TraesCS6B01G265700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G265700 chr6B 100.000 4063 0 0 1 4063 477794616 477790554 0.000000e+00 7504
1 TraesCS6B01G265700 chr6A 89.054 1745 90 42 5 1682 446732738 446731028 0.000000e+00 2071
2 TraesCS6B01G265700 chr6A 83.130 901 93 29 2434 3295 446730498 446729618 0.000000e+00 767
3 TraesCS6B01G265700 chr6A 93.365 422 25 2 3643 4062 446729265 446728845 4.460000e-174 621
4 TraesCS6B01G265700 chr6A 90.262 267 24 2 2012 2277 446730945 446730680 8.360000e-92 348
5 TraesCS6B01G265700 chr6A 84.709 327 20 14 3291 3609 446729566 446729262 2.370000e-77 300
6 TraesCS6B01G265700 chr6D 89.558 747 48 14 1236 1967 309956655 309955924 0.000000e+00 920
7 TraesCS6B01G265700 chr6D 88.633 739 28 21 3 725 309959797 309959099 0.000000e+00 848
8 TraesCS6B01G265700 chr6D 84.575 765 73 23 2566 3295 309955193 309954439 0.000000e+00 717
9 TraesCS6B01G265700 chr6D 92.654 422 28 2 3643 4062 309954065 309953645 4.490000e-169 604
10 TraesCS6B01G265700 chr6D 94.426 305 14 3 1975 2277 309955867 309955564 2.210000e-127 466
11 TraesCS6B01G265700 chr6D 87.828 419 21 12 745 1162 309957253 309956864 7.950000e-127 464
12 TraesCS6B01G265700 chr6D 88.485 330 21 9 3292 3609 309954386 309954062 2.290000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G265700 chr6B 477790554 477794616 4062 True 7504.000000 7504 100.000000 1 4063 1 chr6B.!!$R1 4062
1 TraesCS6B01G265700 chr6A 446728845 446732738 3893 True 821.400000 2071 88.104000 5 4062 5 chr6A.!!$R1 4057
2 TraesCS6B01G265700 chr6D 309953645 309959797 6152 True 628.857143 920 89.451286 3 4062 7 chr6D.!!$R1 4059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 470 0.176219 TATACTCCCCAAACGTGCCG 59.824 55.0 0.00 0.0 0.00 5.69 F
728 796 0.621082 AAGAAGCCCCACTAAGCTCC 59.379 55.0 0.00 0.0 38.74 4.70 F
1970 4051 0.111253 CTTCTTGAGGCCACAAGGGT 59.889 55.0 33.73 0.0 44.84 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 3333 0.036105 TCAGGTGCGATGACTTGCAT 60.036 50.0 0.0 0.0 43.64 3.96 R
2453 4662 0.106708 TTGTATCGGCTGGATCTGGC 59.893 55.0 0.0 0.0 36.55 4.85 R
3490 5897 0.111253 AGTCCCCTTGCTGTCTTTGG 59.889 55.0 0.0 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 0.534203 GAAAACAGGTGGGCTCGTGA 60.534 55.000 9.08 0.00 0.00 4.35
117 119 3.495001 GCGTAAAATACAGCCCAGAGATC 59.505 47.826 0.00 0.00 0.00 2.75
124 126 1.152567 AGCCCAGAGATCGGAGGAG 60.153 63.158 2.44 0.00 0.00 3.69
125 127 1.456705 GCCCAGAGATCGGAGGAGT 60.457 63.158 2.44 0.00 0.00 3.85
126 128 1.045911 GCCCAGAGATCGGAGGAGTT 61.046 60.000 2.44 0.00 0.00 3.01
127 129 1.490574 CCCAGAGATCGGAGGAGTTT 58.509 55.000 2.44 0.00 0.00 2.66
128 130 2.667470 CCCAGAGATCGGAGGAGTTTA 58.333 52.381 2.44 0.00 0.00 2.01
133 135 3.697045 AGAGATCGGAGGAGTTTAGTGTG 59.303 47.826 0.00 0.00 0.00 3.82
149 159 4.193826 AGTGTGATAGTGTGGCTTACAG 57.806 45.455 0.00 0.00 40.69 2.74
303 322 1.405391 GCAACAACCCTTGCTTGTGTT 60.405 47.619 0.00 0.00 42.84 3.32
387 406 4.676799 ATCCCTAGGATTCGATAGTCCA 57.323 45.455 11.48 1.46 39.79 4.02
446 470 0.176219 TATACTCCCCAAACGTGCCG 59.824 55.000 0.00 0.00 0.00 5.69
483 521 4.436998 CTGTCCACGCGGGTCCTC 62.437 72.222 12.47 0.00 38.11 3.71
689 757 2.202171 GCACACGTACATGCGCAC 60.202 61.111 14.90 0.00 34.88 5.34
690 758 2.093799 CACACGTACATGCGCACG 59.906 61.111 14.90 15.28 43.63 5.34
712 780 1.565156 CGCACGCACCTGCTAAAAGA 61.565 55.000 0.00 0.00 39.32 2.52
725 793 2.423892 GCTAAAAGAAGCCCCACTAAGC 59.576 50.000 0.00 0.00 36.45 3.09
726 794 2.980246 AAAAGAAGCCCCACTAAGCT 57.020 45.000 0.00 0.00 42.40 3.74
728 796 0.621082 AAGAAGCCCCACTAAGCTCC 59.379 55.000 0.00 0.00 38.74 4.70
729 797 1.224870 GAAGCCCCACTAAGCTCCC 59.775 63.158 0.00 0.00 38.74 4.30
730 798 2.595009 GAAGCCCCACTAAGCTCCCG 62.595 65.000 0.00 0.00 38.74 5.14
731 799 4.176752 GCCCCACTAAGCTCCCGG 62.177 72.222 0.00 0.00 0.00 5.73
732 800 2.365105 CCCCACTAAGCTCCCGGA 60.365 66.667 0.73 0.00 0.00 5.14
733 801 1.766461 CCCCACTAAGCTCCCGGAT 60.766 63.158 0.73 0.00 0.00 4.18
735 803 1.645710 CCCACTAAGCTCCCGGATAT 58.354 55.000 0.73 0.00 0.00 1.63
736 804 2.559026 CCCCACTAAGCTCCCGGATATA 60.559 54.545 0.73 0.00 0.00 0.86
737 805 3.375699 CCCACTAAGCTCCCGGATATAT 58.624 50.000 0.73 0.00 0.00 0.86
739 807 5.148502 CCCACTAAGCTCCCGGATATATAT 58.851 45.833 0.73 0.00 0.00 0.86
740 808 6.312529 CCCACTAAGCTCCCGGATATATATA 58.687 44.000 0.73 0.00 0.00 0.86
741 809 6.954684 CCCACTAAGCTCCCGGATATATATAT 59.045 42.308 0.73 4.86 0.00 0.86
742 810 8.114102 CCCACTAAGCTCCCGGATATATATATA 58.886 40.741 0.73 4.92 0.00 0.86
888 2786 2.027837 GGAGCCACTTAAACCCGTTCTA 60.028 50.000 0.00 0.00 0.00 2.10
889 2787 3.370209 GGAGCCACTTAAACCCGTTCTAT 60.370 47.826 0.00 0.00 0.00 1.98
935 2835 3.699538 TGGTTGAGTATCGCTAGTGACAT 59.300 43.478 8.45 0.00 38.61 3.06
965 2865 0.946221 AGCTGCGGAAGTTTCTCACG 60.946 55.000 0.00 0.00 0.00 4.35
968 2868 3.011760 GCGGAAGTTTCTCACGGCG 62.012 63.158 4.80 4.80 0.00 6.46
1068 2968 2.496817 GCAGTCGCGGAGAAGGAT 59.503 61.111 6.13 0.00 0.00 3.24
1092 2992 3.083997 GTGGTCATCCCGCCTCCT 61.084 66.667 0.00 0.00 37.81 3.69
1159 3065 7.897658 GTCGTCGACAGCAGTGAGTATACTG 62.898 52.000 20.28 0.00 40.47 2.74
1212 3233 6.070824 TGAGACATGCTAACCATTCTCAACTA 60.071 38.462 6.06 0.00 40.71 2.24
1217 3238 7.611467 ACATGCTAACCATTCTCAACTATGAAA 59.389 33.333 0.00 0.00 30.52 2.69
1232 3253 6.699575 ACTATGAAAAGGGTTCATATGTGC 57.300 37.500 8.75 0.00 39.72 4.57
1289 3330 7.284074 TGTTTTCTATCTGTTCCACAAGGTTA 58.716 34.615 0.00 0.00 35.89 2.85
1291 3332 8.793592 GTTTTCTATCTGTTCCACAAGGTTAAT 58.206 33.333 0.00 0.00 35.89 1.40
1294 3335 9.613428 TTCTATCTGTTCCACAAGGTTAATATG 57.387 33.333 0.00 0.00 35.89 1.78
1302 3345 6.186957 TCCACAAGGTTAATATGCAAGTCAT 58.813 36.000 0.00 0.00 36.30 3.06
1329 3372 5.879223 CACCTGATTTCTGATACTTTGCTCT 59.121 40.000 0.00 0.00 0.00 4.09
1340 3383 6.530120 TGATACTTTGCTCTGGTTTCTTGTA 58.470 36.000 0.00 0.00 0.00 2.41
1405 3448 2.356535 GGGCTCACATGAAAGAGGTGAT 60.357 50.000 0.00 0.00 40.44 3.06
1445 3488 3.223435 TGTTCCTTCTTCTCGTCTCTGT 58.777 45.455 0.00 0.00 0.00 3.41
1449 3492 3.504134 TCCTTCTTCTCGTCTCTGTTGAG 59.496 47.826 0.00 0.00 41.51 3.02
1554 3598 3.696051 GCTCTTTGATCAAAGCATGGGTA 59.304 43.478 33.93 19.11 45.48 3.69
1572 3616 2.028385 GGTAGAGAACGAGAAGGCCAAA 60.028 50.000 5.01 0.00 0.00 3.28
1714 3791 7.178451 CCTGGAAATTCCTGTTACCAAACTTAT 59.822 37.037 13.78 0.00 37.46 1.73
1735 3812 1.597663 GACTGGAAAGTTGTCACACCG 59.402 52.381 0.00 0.00 0.00 4.94
1739 3816 1.133407 GGAAAGTTGTCACACCGCAAA 59.867 47.619 0.00 0.00 0.00 3.68
1804 3885 6.603201 AGAATCACAAAACCTCAAAGAACTCA 59.397 34.615 0.00 0.00 0.00 3.41
1805 3886 6.773976 ATCACAAAACCTCAAAGAACTCAA 57.226 33.333 0.00 0.00 0.00 3.02
1817 3898 7.649306 CCTCAAAGAACTCAAACCTTTAACATG 59.351 37.037 0.00 0.00 0.00 3.21
1822 3903 8.974060 AGAACTCAAACCTTTAACATGTTAGA 57.026 30.769 17.36 12.82 0.00 2.10
1823 3904 9.403583 AGAACTCAAACCTTTAACATGTTAGAA 57.596 29.630 17.36 13.40 0.00 2.10
1824 3905 9.665264 GAACTCAAACCTTTAACATGTTAGAAG 57.335 33.333 17.36 19.86 0.00 2.85
1825 3906 8.747538 ACTCAAACCTTTAACATGTTAGAAGT 57.252 30.769 23.73 16.56 0.00 3.01
1826 3907 8.837389 ACTCAAACCTTTAACATGTTAGAAGTC 58.163 33.333 23.73 0.00 0.00 3.01
1827 3908 8.161699 TCAAACCTTTAACATGTTAGAAGTCC 57.838 34.615 23.73 0.00 0.00 3.85
1828 3909 7.776030 TCAAACCTTTAACATGTTAGAAGTCCA 59.224 33.333 23.73 8.80 0.00 4.02
1829 3910 7.745620 AACCTTTAACATGTTAGAAGTCCAG 57.254 36.000 23.73 16.76 0.00 3.86
1830 3911 5.705905 ACCTTTAACATGTTAGAAGTCCAGC 59.294 40.000 23.73 0.00 0.00 4.85
1831 3912 5.123979 CCTTTAACATGTTAGAAGTCCAGCC 59.876 44.000 23.73 0.00 0.00 4.85
1849 3930 1.372997 CCCGTTCAGGTCTCACACG 60.373 63.158 0.00 0.00 38.74 4.49
1854 3935 2.755650 GTTCAGGTCTCACACGTCATT 58.244 47.619 0.00 0.00 0.00 2.57
1881 3962 2.159179 AGTGCCAGTTCCAAAACCTT 57.841 45.000 0.00 0.00 35.92 3.50
1882 3963 1.756538 AGTGCCAGTTCCAAAACCTTG 59.243 47.619 0.00 0.00 35.92 3.61
1932 4013 8.585018 AGATTACCCCAAACTTAATTTCTGTTG 58.415 33.333 0.00 0.00 0.00 3.33
1940 4021 9.565213 CCAAACTTAATTTCTGTTGATGATCTC 57.435 33.333 0.00 0.00 0.00 2.75
1967 4048 2.614987 CCTCTCTTCTTGAGGCCACAAG 60.615 54.545 30.59 30.59 43.67 3.16
1968 4049 1.349026 TCTCTTCTTGAGGCCACAAGG 59.651 52.381 33.73 22.55 44.84 3.61
1969 4050 0.401738 TCTTCTTGAGGCCACAAGGG 59.598 55.000 33.73 26.80 44.84 3.95
1970 4051 0.111253 CTTCTTGAGGCCACAAGGGT 59.889 55.000 33.73 0.00 44.84 4.34
1971 4052 1.351017 CTTCTTGAGGCCACAAGGGTA 59.649 52.381 33.73 21.52 44.84 3.69
1973 4054 1.281867 TCTTGAGGCCACAAGGGTATG 59.718 52.381 33.73 15.21 44.84 2.39
1986 4116 5.034200 ACAAGGGTATGGTATGTCCTAACA 58.966 41.667 0.00 0.00 40.38 2.41
1996 4126 5.717654 TGGTATGTCCTAACACACTACATCA 59.282 40.000 0.00 0.00 38.48 3.07
2246 4377 9.858247 CATTTCAATTTCATGTTTCTCAAGTTG 57.142 29.630 0.00 0.00 0.00 3.16
2249 4380 7.546358 TCAATTTCATGTTTCTCAAGTTGTGT 58.454 30.769 2.11 0.00 0.00 3.72
2252 4383 8.776376 ATTTCATGTTTCTCAAGTTGTGTTTT 57.224 26.923 2.11 0.00 0.00 2.43
2253 4384 7.579589 TTCATGTTTCTCAAGTTGTGTTTTG 57.420 32.000 2.11 0.00 0.00 2.44
2254 4385 6.918626 TCATGTTTCTCAAGTTGTGTTTTGA 58.081 32.000 2.11 0.15 32.75 2.69
2256 4387 5.160641 TGTTTCTCAAGTTGTGTTTTGAGC 58.839 37.500 2.11 0.00 46.19 4.26
2277 4408 9.693739 TTGAGCATATTTTATTCTTTCCAGGTA 57.306 29.630 0.00 0.00 0.00 3.08
2278 4409 9.693739 TGAGCATATTTTATTCTTTCCAGGTAA 57.306 29.630 0.00 0.00 0.00 2.85
2297 4428 6.679327 GGTAATTACCTTGTCTTGGTCATC 57.321 41.667 24.79 0.00 43.10 2.92
2298 4429 6.177610 GGTAATTACCTTGTCTTGGTCATCA 58.822 40.000 24.79 0.00 43.10 3.07
2299 4430 6.657541 GGTAATTACCTTGTCTTGGTCATCAA 59.342 38.462 24.79 0.00 43.10 2.57
2300 4431 7.339466 GGTAATTACCTTGTCTTGGTCATCAAT 59.661 37.037 24.79 0.00 43.10 2.57
2301 4432 9.391006 GTAATTACCTTGTCTTGGTCATCAATA 57.609 33.333 4.11 0.00 38.88 1.90
2319 4450 8.946085 TCATCAATATAATTAATTCGTCCTGGC 58.054 33.333 3.39 0.00 0.00 4.85
2320 4451 8.950210 CATCAATATAATTAATTCGTCCTGGCT 58.050 33.333 3.39 0.00 0.00 4.75
2321 4452 8.322906 TCAATATAATTAATTCGTCCTGGCTG 57.677 34.615 3.39 0.00 0.00 4.85
2324 4455 3.914426 ATTAATTCGTCCTGGCTGTCT 57.086 42.857 0.00 0.00 0.00 3.41
2332 4463 2.093447 CGTCCTGGCTGTCTTTATTCCT 60.093 50.000 0.00 0.00 0.00 3.36
2348 4479 8.034804 TCTTTATTCCTTTTCTTTATTGCTGGC 58.965 33.333 0.00 0.00 0.00 4.85
2349 4480 5.743636 ATTCCTTTTCTTTATTGCTGGCA 57.256 34.783 0.00 0.00 0.00 4.92
2351 4482 4.881920 TCCTTTTCTTTATTGCTGGCAAC 58.118 39.130 10.28 0.00 38.88 4.17
2352 4483 3.996363 CCTTTTCTTTATTGCTGGCAACC 59.004 43.478 10.28 0.00 38.88 3.77
2354 4485 3.940209 TTCTTTATTGCTGGCAACCTG 57.060 42.857 10.28 2.39 38.88 4.00
2355 4486 1.545582 TCTTTATTGCTGGCAACCTGC 59.454 47.619 10.28 8.41 46.46 4.85
2378 4527 1.243902 TTTTCCGAACCATGAGTGCC 58.756 50.000 0.00 0.00 0.00 5.01
2380 4529 2.796483 TTCCGAACCATGAGTGCCCG 62.796 60.000 0.00 0.00 0.00 6.13
2389 4538 1.682854 CATGAGTGCCCGGCATATTTT 59.317 47.619 16.96 0.00 41.91 1.82
2390 4539 2.719531 TGAGTGCCCGGCATATTTTA 57.280 45.000 16.96 0.00 41.91 1.52
2391 4540 3.222173 TGAGTGCCCGGCATATTTTAT 57.778 42.857 16.96 0.00 41.91 1.40
2392 4541 3.146066 TGAGTGCCCGGCATATTTTATC 58.854 45.455 16.96 0.00 41.91 1.75
2393 4542 3.181445 TGAGTGCCCGGCATATTTTATCT 60.181 43.478 16.96 4.88 41.91 1.98
2394 4543 3.149196 AGTGCCCGGCATATTTTATCTG 58.851 45.455 16.96 0.00 41.91 2.90
2396 4545 3.568007 GTGCCCGGCATATTTTATCTGAA 59.432 43.478 16.96 0.00 41.91 3.02
2397 4546 3.568007 TGCCCGGCATATTTTATCTGAAC 59.432 43.478 8.43 0.00 31.71 3.18
2401 4550 6.682861 GCCCGGCATATTTTATCTGAACTTTT 60.683 38.462 3.91 0.00 0.00 2.27
2402 4551 7.264947 CCCGGCATATTTTATCTGAACTTTTT 58.735 34.615 0.00 0.00 0.00 1.94
2404 4553 9.233232 CCGGCATATTTTATCTGAACTTTTTAC 57.767 33.333 0.00 0.00 0.00 2.01
2405 4554 9.781834 CGGCATATTTTATCTGAACTTTTTACA 57.218 29.630 0.00 0.00 0.00 2.41
2419 4619 8.983724 TGAACTTTTTACAAAACAAACAAGGAG 58.016 29.630 0.00 0.00 0.00 3.69
2420 4620 8.896320 AACTTTTTACAAAACAAACAAGGAGT 57.104 26.923 0.00 0.00 0.00 3.85
2422 4622 8.984764 ACTTTTTACAAAACAAACAAGGAGTTC 58.015 29.630 0.00 0.00 40.26 3.01
2423 4623 9.203421 CTTTTTACAAAACAAACAAGGAGTTCT 57.797 29.630 0.00 0.00 40.26 3.01
2426 4626 9.549078 TTTACAAAACAAACAAGGAGTTCTTTT 57.451 25.926 0.00 0.00 40.26 2.27
2453 4662 7.582435 TTCTAGAATTTGTTGACTCTTAGCG 57.418 36.000 0.00 0.00 0.00 4.26
2455 4664 3.437049 AGAATTTGTTGACTCTTAGCGCC 59.563 43.478 2.29 0.00 0.00 6.53
2456 4665 2.248280 TTTGTTGACTCTTAGCGCCA 57.752 45.000 2.29 0.00 0.00 5.69
2457 4666 1.795768 TTGTTGACTCTTAGCGCCAG 58.204 50.000 2.29 0.00 0.00 4.85
2459 4668 1.550524 TGTTGACTCTTAGCGCCAGAT 59.449 47.619 2.29 0.00 0.00 2.90
2460 4669 2.197577 GTTGACTCTTAGCGCCAGATC 58.802 52.381 2.29 6.72 0.00 2.75
2461 4670 0.747255 TGACTCTTAGCGCCAGATCC 59.253 55.000 2.29 1.64 0.00 3.36
2462 4671 0.747255 GACTCTTAGCGCCAGATCCA 59.253 55.000 2.29 0.00 0.00 3.41
2463 4672 0.749649 ACTCTTAGCGCCAGATCCAG 59.250 55.000 2.29 0.00 0.00 3.86
2464 4673 0.599728 CTCTTAGCGCCAGATCCAGC 60.600 60.000 2.29 0.00 0.00 4.85
2465 4674 1.596477 CTTAGCGCCAGATCCAGCC 60.596 63.158 2.29 0.00 0.00 4.85
2466 4675 3.445518 TTAGCGCCAGATCCAGCCG 62.446 63.158 2.29 0.00 0.00 5.52
2468 4677 4.615815 GCGCCAGATCCAGCCGAT 62.616 66.667 0.00 0.00 0.00 4.18
2469 4678 3.051210 CGCCAGATCCAGCCGATA 58.949 61.111 0.00 0.00 0.00 2.92
2470 4679 1.373497 CGCCAGATCCAGCCGATAC 60.373 63.158 0.00 0.00 0.00 2.24
2471 4680 1.748403 GCCAGATCCAGCCGATACA 59.252 57.895 0.00 0.00 0.00 2.29
2472 4681 0.106708 GCCAGATCCAGCCGATACAA 59.893 55.000 0.00 0.00 0.00 2.41
2473 4682 1.871080 CCAGATCCAGCCGATACAAC 58.129 55.000 0.00 0.00 0.00 3.32
2474 4683 1.541233 CCAGATCCAGCCGATACAACC 60.541 57.143 0.00 0.00 0.00 3.77
2475 4684 1.138859 CAGATCCAGCCGATACAACCA 59.861 52.381 0.00 0.00 0.00 3.67
2476 4685 2.050144 AGATCCAGCCGATACAACCAT 58.950 47.619 0.00 0.00 0.00 3.55
2477 4686 3.006859 CAGATCCAGCCGATACAACCATA 59.993 47.826 0.00 0.00 0.00 2.74
2478 4687 3.646162 AGATCCAGCCGATACAACCATAA 59.354 43.478 0.00 0.00 0.00 1.90
2479 4688 3.469008 TCCAGCCGATACAACCATAAG 57.531 47.619 0.00 0.00 0.00 1.73
2480 4689 3.035363 TCCAGCCGATACAACCATAAGA 58.965 45.455 0.00 0.00 0.00 2.10
2481 4690 3.069586 TCCAGCCGATACAACCATAAGAG 59.930 47.826 0.00 0.00 0.00 2.85
2482 4691 3.181465 CCAGCCGATACAACCATAAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
2483 4692 4.051922 CAGCCGATACAACCATAAGAGTC 58.948 47.826 0.00 0.00 0.00 3.36
2484 4693 3.069729 AGCCGATACAACCATAAGAGTCC 59.930 47.826 0.00 0.00 0.00 3.85
2490 4715 3.521727 ACAACCATAAGAGTCCACTCCT 58.478 45.455 2.96 0.00 43.88 3.69
2491 4716 3.261897 ACAACCATAAGAGTCCACTCCTG 59.738 47.826 2.96 0.00 43.88 3.86
2494 4719 1.833630 CATAAGAGTCCACTCCTGGCA 59.166 52.381 2.96 0.00 43.88 4.92
2496 4721 0.908198 AAGAGTCCACTCCTGGCATC 59.092 55.000 2.96 0.00 43.88 3.91
2504 4729 1.945394 CACTCCTGGCATCTGCATAAC 59.055 52.381 4.33 0.00 44.36 1.89
2517 4742 5.894298 TCTGCATAACTAGAATCCCACAT 57.106 39.130 0.00 0.00 0.00 3.21
2522 4747 5.405571 GCATAACTAGAATCCCACATACACG 59.594 44.000 0.00 0.00 0.00 4.49
2526 4751 3.247006 AGAATCCCACATACACGACAC 57.753 47.619 0.00 0.00 0.00 3.67
2528 4753 3.260884 AGAATCCCACATACACGACACTT 59.739 43.478 0.00 0.00 0.00 3.16
2529 4754 2.448926 TCCCACATACACGACACTTG 57.551 50.000 0.00 0.00 0.00 3.16
2530 4755 0.796312 CCCACATACACGACACTTGC 59.204 55.000 0.00 0.00 0.00 4.01
2531 4756 1.507562 CCACATACACGACACTTGCA 58.492 50.000 0.00 0.00 0.00 4.08
2532 4757 1.870402 CCACATACACGACACTTGCAA 59.130 47.619 0.00 0.00 0.00 4.08
2533 4758 2.096268 CCACATACACGACACTTGCAAG 60.096 50.000 24.84 24.84 0.00 4.01
2545 4846 5.621228 CGACACTTGCAAGAACAATAAAGTC 59.379 40.000 32.50 19.82 0.00 3.01
2546 4847 6.511767 CGACACTTGCAAGAACAATAAAGTCT 60.512 38.462 32.50 2.30 0.00 3.24
2547 4848 7.100458 ACACTTGCAAGAACAATAAAGTCTT 57.900 32.000 32.50 1.82 0.00 3.01
2561 4862 8.246180 ACAATAAAGTCTTGCCATAACATGAAG 58.754 33.333 0.00 0.00 0.00 3.02
2562 4863 5.649782 AAAGTCTTGCCATAACATGAAGG 57.350 39.130 0.00 0.00 0.00 3.46
2566 4867 3.924238 GCCATAACATGAAGGCGTG 57.076 52.632 0.00 0.00 37.41 5.34
2567 4868 1.378531 GCCATAACATGAAGGCGTGA 58.621 50.000 0.00 0.00 37.41 4.35
2568 4869 1.742831 GCCATAACATGAAGGCGTGAA 59.257 47.619 0.00 0.00 37.41 3.18
2588 4889 5.963586 GTGAAACGACTTAGTTTGAACAAGG 59.036 40.000 0.00 0.00 43.54 3.61
2596 4899 7.413657 CGACTTAGTTTGAACAAGGAAGAACAA 60.414 37.037 0.00 0.00 0.00 2.83
2598 4901 5.324784 AGTTTGAACAAGGAAGAACAACC 57.675 39.130 0.00 0.00 0.00 3.77
2608 4911 4.759953 AGGAAGAACAACCTAAGGTCCTA 58.240 43.478 0.00 0.00 33.12 2.94
2614 4917 6.082707 AGAACAACCTAAGGTCCTAGAAGAA 58.917 40.000 0.00 0.00 33.12 2.52
2619 4922 5.270794 ACCTAAGGTCCTAGAAGAACGATT 58.729 41.667 0.00 0.00 0.00 3.34
2624 4927 5.725362 AGGTCCTAGAAGAACGATTCAAAG 58.275 41.667 0.00 0.00 0.00 2.77
2625 4928 5.480772 AGGTCCTAGAAGAACGATTCAAAGA 59.519 40.000 0.00 0.00 0.00 2.52
2626 4929 5.577554 GGTCCTAGAAGAACGATTCAAAGAC 59.422 44.000 0.00 0.00 0.00 3.01
2627 4930 6.391537 GTCCTAGAAGAACGATTCAAAGACT 58.608 40.000 0.00 0.00 0.00 3.24
2628 4931 7.362747 GGTCCTAGAAGAACGATTCAAAGACTA 60.363 40.741 0.00 0.00 0.00 2.59
2631 4934 8.648968 CCTAGAAGAACGATTCAAAGACTAAAC 58.351 37.037 0.00 0.00 0.00 2.01
2632 4935 7.422878 AGAAGAACGATTCAAAGACTAAACC 57.577 36.000 0.00 0.00 0.00 3.27
2633 4936 6.990349 AGAAGAACGATTCAAAGACTAAACCA 59.010 34.615 0.00 0.00 0.00 3.67
2634 4937 7.661847 AGAAGAACGATTCAAAGACTAAACCAT 59.338 33.333 0.00 0.00 0.00 3.55
2635 4938 7.365840 AGAACGATTCAAAGACTAAACCATC 57.634 36.000 0.00 0.00 0.00 3.51
2636 4939 6.934645 AGAACGATTCAAAGACTAAACCATCA 59.065 34.615 0.00 0.00 0.00 3.07
2668 4972 0.251787 AAACATCTCCTTGGCCACCC 60.252 55.000 3.88 0.00 0.00 4.61
2681 4985 4.033776 CACCCGCTCCACCATGGT 62.034 66.667 13.00 13.00 39.03 3.55
2683 4987 1.692749 ACCCGCTCCACCATGGTAT 60.693 57.895 19.28 0.00 39.03 2.73
2685 4989 0.034896 CCCGCTCCACCATGGTATAC 59.965 60.000 19.28 6.68 39.03 1.47
2694 4998 6.372659 GCTCCACCATGGTATACAATATGAAG 59.627 42.308 19.28 0.00 39.03 3.02
2699 5003 9.288576 CACCATGGTATACAATATGAAGAATGT 57.711 33.333 19.28 0.00 0.00 2.71
2752 5066 7.519032 AAAGAAGGATCCGTTTATGTTTTCA 57.481 32.000 5.98 0.00 0.00 2.69
2761 5076 5.591067 TCCGTTTATGTTTTCAGTGACCTTT 59.409 36.000 0.00 0.00 0.00 3.11
2762 5077 5.685511 CCGTTTATGTTTTCAGTGACCTTTG 59.314 40.000 0.00 0.00 0.00 2.77
2781 5096 4.685169 TTGCTAGCTGACAAGTTATTGC 57.315 40.909 17.23 0.00 40.27 3.56
2782 5097 3.942829 TGCTAGCTGACAAGTTATTGCT 58.057 40.909 17.23 0.00 40.27 3.91
2785 5100 5.351465 TGCTAGCTGACAAGTTATTGCTTAC 59.649 40.000 17.23 0.00 40.27 2.34
2786 5101 5.582665 GCTAGCTGACAAGTTATTGCTTACT 59.417 40.000 7.70 0.00 40.27 2.24
2787 5102 6.237969 GCTAGCTGACAAGTTATTGCTTACTC 60.238 42.308 7.70 0.00 40.27 2.59
2788 5103 4.627467 AGCTGACAAGTTATTGCTTACTCG 59.373 41.667 0.00 0.00 40.27 4.18
2789 5104 4.625742 GCTGACAAGTTATTGCTTACTCGA 59.374 41.667 0.00 0.00 40.27 4.04
2791 5106 6.475727 GCTGACAAGTTATTGCTTACTCGATA 59.524 38.462 0.00 0.00 40.27 2.92
2792 5107 7.169982 GCTGACAAGTTATTGCTTACTCGATAT 59.830 37.037 0.00 0.00 40.27 1.63
2799 5114 9.776158 AGTTATTGCTTACTCGATATATTCTCG 57.224 33.333 0.00 1.97 37.47 4.04
2800 5115 9.557338 GTTATTGCTTACTCGATATATTCTCGT 57.443 33.333 7.11 0.00 37.40 4.18
2830 5161 0.673437 TATGTGCATCCGCTGATCGA 59.327 50.000 0.00 0.00 41.67 3.59
2832 5163 1.519234 GTGCATCCGCTGATCGACA 60.519 57.895 0.00 0.00 41.67 4.35
2837 5168 0.940126 ATCCGCTGATCGACAAATGC 59.060 50.000 0.00 0.00 41.67 3.56
2841 5172 1.662629 CGCTGATCGACAAATGCTCTT 59.337 47.619 0.00 0.00 41.67 2.85
2845 5176 4.201891 GCTGATCGACAAATGCTCTTGAAT 60.202 41.667 5.50 0.00 0.00 2.57
2886 5217 2.226674 GAGTTGGAAAAGAAGAAGGCCG 59.773 50.000 0.00 0.00 0.00 6.13
2891 5222 4.855340 TGGAAAAGAAGAAGGCCGAATAT 58.145 39.130 0.00 0.00 0.00 1.28
2993 5324 2.070028 GAAGAAGTTCTCAAGGCCGAC 58.930 52.381 5.70 0.00 0.00 4.79
3074 5405 1.673168 GGGCATAAGAAGCACCTCAG 58.327 55.000 0.00 0.00 0.00 3.35
3076 5407 2.170607 GGGCATAAGAAGCACCTCAGTA 59.829 50.000 0.00 0.00 0.00 2.74
3091 5430 3.629398 CCTCAGTATTGGAGGTGATTTGC 59.371 47.826 0.00 0.00 45.59 3.68
3101 5440 2.675348 GAGGTGATTTGCTCTGTGTAGC 59.325 50.000 0.00 0.00 43.08 3.58
3104 5443 2.079158 TGATTTGCTCTGTGTAGCTGC 58.921 47.619 0.00 0.00 43.19 5.25
3108 5447 1.800805 TGCTCTGTGTAGCTGCTTTC 58.199 50.000 7.79 2.35 43.19 2.62
3115 5454 3.403038 TGTGTAGCTGCTTTCCTTCTTC 58.597 45.455 7.79 0.00 0.00 2.87
3134 5473 7.255381 CCTTCTTCATGTTCTGAAAATGTGTCT 60.255 37.037 17.74 0.00 43.20 3.41
3144 5483 6.035843 TCTGAAAATGTGTCTTGTTTTCTGC 58.964 36.000 10.11 0.00 40.62 4.26
3158 5497 4.095782 TGTTTTCTGCGAGTTAAGTTTGCT 59.904 37.500 9.14 0.00 0.00 3.91
3177 5516 8.940952 AGTTTGCTACTCTTCATGTTATCTTTC 58.059 33.333 0.00 0.00 28.23 2.62
3178 5517 8.940952 GTTTGCTACTCTTCATGTTATCTTTCT 58.059 33.333 0.00 0.00 0.00 2.52
3214 5553 5.180868 GGGAGCTATTCTTCATGTTGCATAG 59.819 44.000 0.00 0.00 0.00 2.23
3222 5561 6.947644 TCTTCATGTTGCATAGCATGTAAT 57.052 33.333 19.15 0.00 43.52 1.89
3262 5601 6.294361 TGGTGGTACATATATAGCATCCAC 57.706 41.667 15.51 15.51 44.52 4.02
3277 5616 0.669619 TCCACTGTTCGCGTTGTCTA 59.330 50.000 5.77 0.00 0.00 2.59
3364 5761 5.840715 TCTGCATGAGATGTTCAGAGTATC 58.159 41.667 0.00 0.00 39.68 2.24
3376 5773 6.336566 TGTTCAGAGTATCATCTCTTCTTGC 58.663 40.000 0.00 0.00 42.10 4.01
3387 5784 4.581309 TCTCTTCTTGCCTCATGGATTT 57.419 40.909 0.00 0.00 34.57 2.17
3388 5785 4.927049 TCTCTTCTTGCCTCATGGATTTT 58.073 39.130 0.00 0.00 34.57 1.82
3389 5786 6.065976 TCTCTTCTTGCCTCATGGATTTTA 57.934 37.500 0.00 0.00 34.57 1.52
3391 5788 6.769822 TCTCTTCTTGCCTCATGGATTTTATC 59.230 38.462 0.00 0.00 34.57 1.75
3434 5835 4.572985 TGACAATGCTTGTTTCCTCTTG 57.427 40.909 3.56 0.00 45.52 3.02
3435 5836 4.206375 TGACAATGCTTGTTTCCTCTTGA 58.794 39.130 3.56 0.00 45.52 3.02
3456 5857 4.141597 TGAAGTGTGTGGTCTTGGTAATGA 60.142 41.667 0.00 0.00 0.00 2.57
3457 5858 3.740115 AGTGTGTGGTCTTGGTAATGAC 58.260 45.455 0.00 0.00 0.00 3.06
3470 5871 3.000727 GGTAATGACGGCATATGTAGGC 58.999 50.000 2.90 1.52 33.44 3.93
3481 5888 5.070001 GGCATATGTAGGCAACAGGAATAA 58.930 41.667 4.29 0.00 42.70 1.40
3490 5897 8.154856 TGTAGGCAACAGGAATAAAGGATATAC 58.845 37.037 0.00 0.00 41.41 1.47
3499 5906 9.277783 CAGGAATAAAGGATATACCAAAGACAG 57.722 37.037 0.00 0.00 42.04 3.51
3557 5964 1.153353 TCGCCACCGAATTTTCAGTC 58.847 50.000 0.00 0.00 41.17 3.51
3606 6013 7.531857 TTTATTTCTATGGCAGTTTTCACCA 57.468 32.000 0.00 0.00 37.99 4.17
3607 6014 7.716799 TTATTTCTATGGCAGTTTTCACCAT 57.283 32.000 0.00 0.00 45.94 3.55
3608 6015 5.389859 TTTCTATGGCAGTTTTCACCATG 57.610 39.130 4.04 0.00 43.93 3.66
3609 6016 3.355378 TCTATGGCAGTTTTCACCATGG 58.645 45.455 11.19 11.19 43.93 3.66
3610 6017 2.014010 ATGGCAGTTTTCACCATGGT 57.986 45.000 13.00 13.00 42.59 3.55
3611 6018 1.786937 TGGCAGTTTTCACCATGGTT 58.213 45.000 16.84 0.00 0.00 3.67
3612 6019 1.411977 TGGCAGTTTTCACCATGGTTG 59.588 47.619 16.84 11.33 0.00 3.77
3613 6020 1.686052 GGCAGTTTTCACCATGGTTGA 59.314 47.619 16.84 13.57 0.00 3.18
3614 6021 2.299867 GGCAGTTTTCACCATGGTTGAT 59.700 45.455 16.84 0.00 0.00 2.57
3615 6022 3.509575 GGCAGTTTTCACCATGGTTGATA 59.490 43.478 16.84 8.82 0.00 2.15
3616 6023 4.485163 GCAGTTTTCACCATGGTTGATAC 58.515 43.478 16.84 15.50 0.00 2.24
3617 6024 4.722194 CAGTTTTCACCATGGTTGATACG 58.278 43.478 16.84 2.47 0.00 3.06
3618 6025 3.756434 AGTTTTCACCATGGTTGATACGG 59.244 43.478 16.84 1.62 0.00 4.02
3619 6026 2.411628 TTCACCATGGTTGATACGGG 57.588 50.000 16.84 0.77 0.00 5.28
3620 6027 1.281419 TCACCATGGTTGATACGGGT 58.719 50.000 16.84 0.00 0.00 5.28
3621 6028 2.468915 TCACCATGGTTGATACGGGTA 58.531 47.619 16.84 0.00 0.00 3.69
3622 6029 3.042682 TCACCATGGTTGATACGGGTAT 58.957 45.455 16.84 0.00 0.00 2.73
3623 6030 3.138304 CACCATGGTTGATACGGGTATG 58.862 50.000 16.84 0.00 0.00 2.39
3624 6031 3.042682 ACCATGGTTGATACGGGTATGA 58.957 45.455 13.00 0.00 0.00 2.15
3625 6032 3.456644 ACCATGGTTGATACGGGTATGAA 59.543 43.478 13.00 0.00 0.00 2.57
3626 6033 4.104102 ACCATGGTTGATACGGGTATGAAT 59.896 41.667 13.00 0.00 0.00 2.57
3627 6034 4.455533 CCATGGTTGATACGGGTATGAATG 59.544 45.833 2.57 0.00 0.00 2.67
3628 6035 4.764050 TGGTTGATACGGGTATGAATGT 57.236 40.909 0.00 0.00 0.00 2.71
3629 6036 4.699637 TGGTTGATACGGGTATGAATGTC 58.300 43.478 0.00 0.00 0.00 3.06
3630 6037 4.162509 TGGTTGATACGGGTATGAATGTCA 59.837 41.667 0.00 0.00 0.00 3.58
3631 6038 5.163248 TGGTTGATACGGGTATGAATGTCAT 60.163 40.000 0.00 0.00 40.72 3.06
3632 6039 5.763204 GGTTGATACGGGTATGAATGTCATT 59.237 40.000 0.00 0.00 38.26 2.57
3633 6040 6.073222 GGTTGATACGGGTATGAATGTCATTC 60.073 42.308 17.21 17.21 38.26 2.67
3634 6041 5.547465 TGATACGGGTATGAATGTCATTCC 58.453 41.667 20.41 7.01 41.78 3.01
3635 6042 3.924114 ACGGGTATGAATGTCATTCCA 57.076 42.857 20.41 10.59 43.55 3.53
3636 6043 3.541632 ACGGGTATGAATGTCATTCCAC 58.458 45.455 20.41 17.19 43.55 4.02
3637 6044 3.054728 ACGGGTATGAATGTCATTCCACA 60.055 43.478 20.41 5.62 43.55 4.17
3638 6045 3.561310 CGGGTATGAATGTCATTCCACAG 59.439 47.826 20.41 12.60 43.55 3.66
3639 6046 3.885297 GGGTATGAATGTCATTCCACAGG 59.115 47.826 20.41 0.00 43.55 4.00
3640 6047 3.316308 GGTATGAATGTCATTCCACAGGC 59.684 47.826 20.41 6.98 42.00 4.85
3641 6048 2.583024 TGAATGTCATTCCACAGGCA 57.417 45.000 20.41 0.55 38.50 4.75
3671 6078 4.110482 GAGGATGCATTTTGATGCTTCAC 58.890 43.478 21.21 14.00 46.93 3.18
3740 6147 2.699954 CCTCTACAATTCCGCAAGTGT 58.300 47.619 0.00 0.00 43.19 3.55
3768 6175 6.272822 AGTCCCTTTGCATAAACAAGATTC 57.727 37.500 0.00 0.00 0.00 2.52
3769 6176 5.185828 AGTCCCTTTGCATAAACAAGATTCC 59.814 40.000 0.00 0.00 0.00 3.01
3775 6182 3.369756 TGCATAAACAAGATTCCGACGAC 59.630 43.478 0.00 0.00 0.00 4.34
3784 6191 3.991367 AGATTCCGACGACAAGAAAAGT 58.009 40.909 0.00 0.00 0.00 2.66
3853 6262 7.814264 ACATAGAAGCCTAAATTGGATCTTG 57.186 36.000 0.00 0.00 0.00 3.02
3859 6268 6.567602 AGCCTAAATTGGATCTTGACTACT 57.432 37.500 0.00 0.00 0.00 2.57
3862 6271 8.371699 AGCCTAAATTGGATCTTGACTACTATC 58.628 37.037 0.00 0.00 0.00 2.08
3940 6349 0.371301 CTAGCACGTAGTACGACGCA 59.629 55.000 29.56 19.73 46.05 5.24
3979 6388 3.007973 GCGGAAGAGGAAGGCGAGT 62.008 63.158 0.00 0.00 0.00 4.18
3989 6398 1.536284 GGAAGGCGAGTAGATTCACCG 60.536 57.143 0.00 0.00 0.00 4.94
4043 6452 2.029200 TGCAGCAACAACATACCAATGG 60.029 45.455 0.00 0.00 37.43 3.16
4044 6453 2.674747 GCAGCAACAACATACCAATGGG 60.675 50.000 3.55 0.00 37.43 4.00
4062 6471 1.338769 GGGTAAGAGACGGCAACACAT 60.339 52.381 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.782443 CGGACCAGCCTGTACCCC 61.782 72.222 0.00 0.00 0.00 4.95
1 2 2.682494 TCGGACCAGCCTGTACCC 60.682 66.667 0.00 0.00 0.00 3.69
83 85 6.458232 TGTATTTTACGCATTAAAGCCCAT 57.542 33.333 0.00 0.00 31.11 4.00
117 119 4.158025 ACACTATCACACTAAACTCCTCCG 59.842 45.833 0.00 0.00 0.00 4.63
124 126 5.929992 TGTAAGCCACACTATCACACTAAAC 59.070 40.000 0.00 0.00 30.04 2.01
125 127 6.104146 TGTAAGCCACACTATCACACTAAA 57.896 37.500 0.00 0.00 30.04 1.85
126 128 5.720202 CTGTAAGCCACACTATCACACTAA 58.280 41.667 0.00 0.00 32.33 2.24
127 129 5.324784 CTGTAAGCCACACTATCACACTA 57.675 43.478 0.00 0.00 32.33 2.74
128 130 4.193826 CTGTAAGCCACACTATCACACT 57.806 45.455 0.00 0.00 32.33 3.55
175 185 6.755141 GCGTCATGTCTCCACTTTAATTAGTA 59.245 38.462 0.00 0.00 0.00 1.82
176 186 5.581085 GCGTCATGTCTCCACTTTAATTAGT 59.419 40.000 0.00 0.00 0.00 2.24
177 187 5.580691 TGCGTCATGTCTCCACTTTAATTAG 59.419 40.000 0.00 0.00 0.00 1.73
303 322 2.451490 TCCACAGCTGGAAAACAACAA 58.549 42.857 19.93 0.00 44.26 2.83
327 346 0.451628 GGACGCGGCTTAAAAACGAC 60.452 55.000 13.91 0.00 0.00 4.34
387 406 0.250166 GTGGGAGCACGGTACAAACT 60.250 55.000 0.00 0.00 0.00 2.66
446 470 0.166814 GGACAGTGCAGCGTTGAATC 59.833 55.000 2.38 0.00 0.00 2.52
509 547 4.933064 CGCCTCCTCCGACGCATC 62.933 72.222 0.00 0.00 0.00 3.91
621 689 2.574212 GAAATGACGCGCGCCTTG 60.574 61.111 32.58 14.78 0.00 3.61
622 690 1.922135 AATGAAATGACGCGCGCCTT 61.922 50.000 32.58 15.41 0.00 4.35
623 691 2.398554 AATGAAATGACGCGCGCCT 61.399 52.632 32.58 15.26 0.00 5.52
624 692 2.100216 AATGAAATGACGCGCGCC 59.900 55.556 32.58 21.99 0.00 6.53
625 693 0.792729 TTCAATGAAATGACGCGCGC 60.793 50.000 32.58 23.91 0.00 6.86
626 694 1.813896 ATTCAATGAAATGACGCGCG 58.186 45.000 30.96 30.96 0.00 6.86
712 780 2.670148 CGGGAGCTTAGTGGGGCTT 61.670 63.158 0.00 0.00 39.05 4.35
772 2669 2.269241 GCGGGGAGGTGGAAGAAG 59.731 66.667 0.00 0.00 0.00 2.85
773 2670 2.203938 AGCGGGGAGGTGGAAGAA 60.204 61.111 0.00 0.00 0.00 2.52
774 2671 3.003173 CAGCGGGGAGGTGGAAGA 61.003 66.667 0.00 0.00 44.14 2.87
826 2724 6.486657 GCCTGGAGGAAAAGCTTTTTAAATTT 59.513 34.615 24.58 1.09 37.39 1.82
828 2726 5.513094 GGCCTGGAGGAAAAGCTTTTTAAAT 60.513 40.000 24.58 11.50 37.39 1.40
829 2727 4.202315 GGCCTGGAGGAAAAGCTTTTTAAA 60.202 41.667 24.58 9.14 37.39 1.52
830 2728 3.323691 GGCCTGGAGGAAAAGCTTTTTAA 59.676 43.478 24.58 8.83 37.39 1.52
831 2729 2.897326 GGCCTGGAGGAAAAGCTTTTTA 59.103 45.455 24.58 9.11 37.39 1.52
837 2735 1.680314 CCTGGCCTGGAGGAAAAGC 60.680 63.158 23.89 0.00 37.39 3.51
838 2736 1.680314 GCCTGGCCTGGAGGAAAAG 60.680 63.158 31.43 3.17 37.39 2.27
842 2740 1.995626 GTTAGCCTGGCCTGGAGGA 60.996 63.158 31.43 12.68 37.39 3.71
844 2742 2.187946 CGTTAGCCTGGCCTGGAG 59.812 66.667 31.43 7.28 0.00 3.86
845 2743 3.399181 CCGTTAGCCTGGCCTGGA 61.399 66.667 31.43 9.51 0.00 3.86
866 2764 0.769247 AACGGGTTTAAGTGGCTCCT 59.231 50.000 0.00 0.00 0.00 3.69
913 2811 3.086282 TGTCACTAGCGATACTCAACCA 58.914 45.455 0.00 0.00 0.00 3.67
935 2835 1.374631 CCGCAGCTGCTTCACTGTA 60.375 57.895 34.22 0.00 39.32 2.74
965 2865 2.591715 ACACAGGTGCTTGTCGCC 60.592 61.111 0.00 0.00 45.76 5.54
1055 2955 2.184322 GCACATCCTTCTCCGCGA 59.816 61.111 8.23 0.00 0.00 5.87
1059 2959 1.450312 CACCGGCACATCCTTCTCC 60.450 63.158 0.00 0.00 0.00 3.71
1068 2968 4.028490 GGGATGACCACCGGCACA 62.028 66.667 0.00 0.00 39.85 4.57
1212 3233 5.625197 GCTTGCACATATGAACCCTTTTCAT 60.625 40.000 10.38 4.96 41.54 2.57
1217 3238 2.806434 TGCTTGCACATATGAACCCTT 58.194 42.857 10.38 0.00 0.00 3.95
1232 3253 2.060326 CAGGCAACAGTTGATGCTTG 57.940 50.000 17.99 11.99 42.39 4.01
1289 3330 2.615447 CAGGTGCGATGACTTGCATATT 59.385 45.455 0.00 0.00 43.64 1.28
1291 3332 1.206849 TCAGGTGCGATGACTTGCATA 59.793 47.619 0.00 0.00 43.64 3.14
1292 3333 0.036105 TCAGGTGCGATGACTTGCAT 60.036 50.000 0.00 0.00 43.64 3.96
1293 3334 0.036105 ATCAGGTGCGATGACTTGCA 60.036 50.000 0.00 0.00 39.55 4.08
1294 3335 1.089920 AATCAGGTGCGATGACTTGC 58.910 50.000 0.00 0.00 0.00 4.01
1302 3345 4.471904 AAGTATCAGAAATCAGGTGCGA 57.528 40.909 0.00 0.00 0.00 5.10
1329 3372 2.878406 GCAGCTTCTGTACAAGAAACCA 59.122 45.455 0.00 0.00 44.38 3.67
1340 3383 0.603975 GGTTTCTCGGCAGCTTCTGT 60.604 55.000 0.00 0.00 33.43 3.41
1445 3488 0.108329 GCTTAGCCGGCTGTACTCAA 60.108 55.000 38.98 22.26 0.00 3.02
1449 3492 1.134907 TGTTAGCTTAGCCGGCTGTAC 60.135 52.381 38.98 25.56 40.52 2.90
1554 3598 1.609320 GCTTTGGCCTTCTCGTTCTCT 60.609 52.381 3.32 0.00 0.00 3.10
1572 3616 7.217200 TGTTGATAACTTACTTGTTCTCAGCT 58.783 34.615 0.00 0.00 36.24 4.24
1609 3656 1.453155 GTGCAGAATGAACGGGTGAT 58.547 50.000 0.00 0.00 32.99 3.06
1668 3726 2.116238 GGCTGACACTGAATAGGGGTA 58.884 52.381 0.00 0.00 0.00 3.69
1669 3727 0.912486 GGCTGACACTGAATAGGGGT 59.088 55.000 0.00 0.00 0.00 4.95
1671 3729 1.134280 CAGGGCTGACACTGAATAGGG 60.134 57.143 0.00 0.00 36.86 3.53
1714 3791 2.639065 GGTGTGACAACTTTCCAGTCA 58.361 47.619 0.00 0.00 39.74 3.41
1739 3816 8.804204 ACTCTTACTACTACAAAATAGCACAGT 58.196 33.333 0.00 0.00 0.00 3.55
1755 3832 3.256136 ACTGCCAGTGTGACTCTTACTAC 59.744 47.826 0.00 0.00 0.00 2.73
1756 3833 3.255888 CACTGCCAGTGTGACTCTTACTA 59.744 47.826 16.78 0.00 41.19 1.82
1757 3834 2.036475 CACTGCCAGTGTGACTCTTACT 59.964 50.000 16.78 0.00 41.19 2.24
1798 3875 9.665264 CTTCTAACATGTTAAAGGTTTGAGTTC 57.335 33.333 18.55 0.00 30.41 3.01
1804 3885 7.255486 GCTGGACTTCTAACATGTTAAAGGTTT 60.255 37.037 26.44 15.91 0.00 3.27
1805 3886 6.206829 GCTGGACTTCTAACATGTTAAAGGTT 59.793 38.462 26.44 16.34 0.00 3.50
1817 3898 0.323957 AACGGGGCTGGACTTCTAAC 59.676 55.000 0.00 0.00 0.00 2.34
1822 3903 2.750350 CTGAACGGGGCTGGACTT 59.250 61.111 0.00 0.00 0.00 3.01
1823 3904 3.322466 CCTGAACGGGGCTGGACT 61.322 66.667 0.00 0.00 0.00 3.85
1824 3905 3.607370 GACCTGAACGGGGCTGGAC 62.607 68.421 4.64 0.00 36.97 4.02
1825 3906 3.319198 GACCTGAACGGGGCTGGA 61.319 66.667 4.64 0.00 36.97 3.86
1826 3907 3.316573 GAGACCTGAACGGGGCTGG 62.317 68.421 13.28 0.00 46.32 4.85
1827 3908 2.266055 GAGACCTGAACGGGGCTG 59.734 66.667 13.28 0.00 46.32 4.85
1829 3910 2.047179 GTGAGACCTGAACGGGGC 60.047 66.667 4.64 0.55 36.97 5.80
1830 3911 1.004918 GTGTGAGACCTGAACGGGG 60.005 63.158 4.64 0.00 36.97 5.73
1831 3912 1.372997 CGTGTGAGACCTGAACGGG 60.373 63.158 0.00 0.00 36.97 5.28
1881 3962 2.857186 TATGGCACTGCAAAGTCTCA 57.143 45.000 2.82 0.00 0.00 3.27
1882 3963 4.397417 AGATTTATGGCACTGCAAAGTCTC 59.603 41.667 2.82 0.00 0.00 3.36
1922 4003 5.589452 GCTCTGGAGATCATCAACAGAAATT 59.411 40.000 11.20 0.00 37.69 1.82
1927 4008 2.435069 AGGCTCTGGAGATCATCAACAG 59.565 50.000 1.35 2.93 0.00 3.16
1932 4013 2.880443 AGAGAGGCTCTGGAGATCATC 58.120 52.381 24.21 3.98 39.62 2.92
1967 4048 4.407945 AGTGTGTTAGGACATACCATACCC 59.592 45.833 3.32 0.00 45.75 3.69
1968 4049 5.609533 AGTGTGTTAGGACATACCATACC 57.390 43.478 3.32 0.00 45.75 2.73
1969 4050 7.104043 TGTAGTGTGTTAGGACATACCATAC 57.896 40.000 3.32 2.33 45.75 2.39
1970 4051 7.562088 TGATGTAGTGTGTTAGGACATACCATA 59.438 37.037 3.32 0.00 45.75 2.74
1971 4052 6.382859 TGATGTAGTGTGTTAGGACATACCAT 59.617 38.462 3.32 1.75 45.75 3.55
1973 4054 6.216801 TGATGTAGTGTGTTAGGACATACC 57.783 41.667 3.32 0.00 45.75 2.73
1986 4116 9.151471 GACAGTAAACACATATTGATGTAGTGT 57.849 33.333 0.00 0.00 44.82 3.55
1996 4126 4.700213 GGGCACTGACAGTAAACACATATT 59.300 41.667 8.02 0.00 0.00 1.28
2114 4245 1.283029 AGCAGCCCTGTTGTGACATAT 59.717 47.619 0.00 0.00 34.72 1.78
2191 4322 5.828328 ACTTACTTCCTTCCTTTTCAGTTGG 59.172 40.000 0.00 0.00 0.00 3.77
2249 4380 9.874205 CCTGGAAAGAATAAAATATGCTCAAAA 57.126 29.630 0.00 0.00 0.00 2.44
2252 4383 9.693739 TTACCTGGAAAGAATAAAATATGCTCA 57.306 29.630 0.00 0.00 0.00 4.26
2274 4405 6.177610 TGATGACCAAGACAAGGTAATTACC 58.822 40.000 24.71 24.71 46.82 2.85
2293 4424 8.946085 GCCAGGACGAATTAATTATATTGATGA 58.054 33.333 0.00 0.00 0.00 2.92
2294 4425 8.950210 AGCCAGGACGAATTAATTATATTGATG 58.050 33.333 0.00 0.00 0.00 3.07
2295 4426 8.950210 CAGCCAGGACGAATTAATTATATTGAT 58.050 33.333 0.00 0.00 0.00 2.57
2296 4427 7.936847 ACAGCCAGGACGAATTAATTATATTGA 59.063 33.333 0.00 0.00 0.00 2.57
2297 4428 8.099364 ACAGCCAGGACGAATTAATTATATTG 57.901 34.615 0.00 0.00 0.00 1.90
2298 4429 8.157476 AGACAGCCAGGACGAATTAATTATATT 58.843 33.333 0.00 0.00 0.00 1.28
2299 4430 7.680730 AGACAGCCAGGACGAATTAATTATAT 58.319 34.615 0.00 0.00 0.00 0.86
2300 4431 7.062749 AGACAGCCAGGACGAATTAATTATA 57.937 36.000 0.00 0.00 0.00 0.98
2301 4432 5.930135 AGACAGCCAGGACGAATTAATTAT 58.070 37.500 0.00 0.00 0.00 1.28
2302 4433 5.353394 AGACAGCCAGGACGAATTAATTA 57.647 39.130 0.00 0.00 0.00 1.40
2303 4434 4.222124 AGACAGCCAGGACGAATTAATT 57.778 40.909 0.00 0.00 0.00 1.40
2304 4435 3.914426 AGACAGCCAGGACGAATTAAT 57.086 42.857 0.00 0.00 0.00 1.40
2305 4436 3.695830 AAGACAGCCAGGACGAATTAA 57.304 42.857 0.00 0.00 0.00 1.40
2306 4437 3.695830 AAAGACAGCCAGGACGAATTA 57.304 42.857 0.00 0.00 0.00 1.40
2307 4438 2.568623 AAAGACAGCCAGGACGAATT 57.431 45.000 0.00 0.00 0.00 2.17
2308 4439 3.914426 ATAAAGACAGCCAGGACGAAT 57.086 42.857 0.00 0.00 0.00 3.34
2309 4440 3.596214 GAATAAAGACAGCCAGGACGAA 58.404 45.455 0.00 0.00 0.00 3.85
2310 4441 2.093658 GGAATAAAGACAGCCAGGACGA 60.094 50.000 0.00 0.00 0.00 4.20
2311 4442 2.093447 AGGAATAAAGACAGCCAGGACG 60.093 50.000 0.00 0.00 0.00 4.79
2312 4443 3.636153 AGGAATAAAGACAGCCAGGAC 57.364 47.619 0.00 0.00 0.00 3.85
2313 4444 4.657814 AAAGGAATAAAGACAGCCAGGA 57.342 40.909 0.00 0.00 0.00 3.86
2314 4445 5.012893 AGAAAAGGAATAAAGACAGCCAGG 58.987 41.667 0.00 0.00 0.00 4.45
2315 4446 6.581171 AAGAAAAGGAATAAAGACAGCCAG 57.419 37.500 0.00 0.00 0.00 4.85
2316 4447 6.976934 AAAGAAAAGGAATAAAGACAGCCA 57.023 33.333 0.00 0.00 0.00 4.75
2317 4448 9.358872 CAATAAAGAAAAGGAATAAAGACAGCC 57.641 33.333 0.00 0.00 0.00 4.85
2318 4449 8.864024 GCAATAAAGAAAAGGAATAAAGACAGC 58.136 33.333 0.00 0.00 0.00 4.40
2320 4451 9.912634 CAGCAATAAAGAAAAGGAATAAAGACA 57.087 29.630 0.00 0.00 0.00 3.41
2321 4452 9.358872 CCAGCAATAAAGAAAAGGAATAAAGAC 57.641 33.333 0.00 0.00 0.00 3.01
2324 4455 7.675062 TGCCAGCAATAAAGAAAAGGAATAAA 58.325 30.769 0.00 0.00 0.00 1.40
2332 4463 4.630111 CAGGTTGCCAGCAATAAAGAAAA 58.370 39.130 8.52 0.00 38.28 2.29
2363 4505 2.819595 CGGGCACTCATGGTTCGG 60.820 66.667 0.00 0.00 0.00 4.30
2365 4514 3.134127 GCCGGGCACTCATGGTTC 61.134 66.667 15.62 0.00 0.00 3.62
2377 4526 6.391227 AAAGTTCAGATAAAATATGCCGGG 57.609 37.500 2.18 0.00 0.00 5.73
2378 4527 9.233232 GTAAAAAGTTCAGATAAAATATGCCGG 57.767 33.333 0.00 0.00 0.00 6.13
2391 4540 8.983724 CCTTGTTTGTTTTGTAAAAAGTTCAGA 58.016 29.630 0.00 0.00 0.00 3.27
2392 4541 8.983724 TCCTTGTTTGTTTTGTAAAAAGTTCAG 58.016 29.630 0.00 0.00 0.00 3.02
2393 4542 8.888579 TCCTTGTTTGTTTTGTAAAAAGTTCA 57.111 26.923 0.00 0.00 0.00 3.18
2394 4543 8.984764 ACTCCTTGTTTGTTTTGTAAAAAGTTC 58.015 29.630 0.00 0.00 0.00 3.01
2396 4545 8.896320 AACTCCTTGTTTGTTTTGTAAAAAGT 57.104 26.923 0.00 0.00 34.84 2.66
2397 4546 9.203421 AGAACTCCTTGTTTGTTTTGTAAAAAG 57.797 29.630 0.00 0.00 39.30 2.27
2401 4550 9.549078 AAAAAGAACTCCTTGTTTGTTTTGTAA 57.451 25.926 0.00 0.00 39.30 2.41
2438 4647 1.343142 TCTGGCGCTAAGAGTCAACAA 59.657 47.619 7.64 0.00 0.00 2.83
2440 4649 2.197577 GATCTGGCGCTAAGAGTCAAC 58.802 52.381 7.64 0.00 0.00 3.18
2451 4660 3.226429 TATCGGCTGGATCTGGCGC 62.226 63.158 22.57 0.00 46.88 6.53
2453 4662 0.106708 TTGTATCGGCTGGATCTGGC 59.893 55.000 0.00 0.00 36.55 4.85
2455 4664 1.138859 TGGTTGTATCGGCTGGATCTG 59.861 52.381 0.00 0.00 36.55 2.90
2456 4665 1.496060 TGGTTGTATCGGCTGGATCT 58.504 50.000 0.00 0.00 36.55 2.75
2457 4666 2.550830 ATGGTTGTATCGGCTGGATC 57.449 50.000 0.00 0.00 36.55 3.36
2459 4668 3.035363 TCTTATGGTTGTATCGGCTGGA 58.965 45.455 0.00 0.00 0.00 3.86
2460 4669 3.181465 ACTCTTATGGTTGTATCGGCTGG 60.181 47.826 0.00 0.00 0.00 4.85
2461 4670 4.051922 GACTCTTATGGTTGTATCGGCTG 58.948 47.826 0.00 0.00 0.00 4.85
2462 4671 3.069729 GGACTCTTATGGTTGTATCGGCT 59.930 47.826 0.00 0.00 0.00 5.52
2463 4672 3.181469 TGGACTCTTATGGTTGTATCGGC 60.181 47.826 0.00 0.00 0.00 5.54
2464 4673 4.099573 AGTGGACTCTTATGGTTGTATCGG 59.900 45.833 0.00 0.00 0.00 4.18
2465 4674 5.263968 AGTGGACTCTTATGGTTGTATCG 57.736 43.478 0.00 0.00 0.00 2.92
2466 4675 5.364157 AGGAGTGGACTCTTATGGTTGTATC 59.636 44.000 6.74 0.00 42.48 2.24
2467 4676 5.129485 CAGGAGTGGACTCTTATGGTTGTAT 59.871 44.000 6.74 0.00 42.48 2.29
2468 4677 4.466370 CAGGAGTGGACTCTTATGGTTGTA 59.534 45.833 6.74 0.00 42.48 2.41
2469 4678 3.261897 CAGGAGTGGACTCTTATGGTTGT 59.738 47.826 6.74 0.00 42.48 3.32
2470 4679 3.866651 CAGGAGTGGACTCTTATGGTTG 58.133 50.000 6.74 0.00 42.48 3.77
2484 4693 1.945394 GTTATGCAGATGCCAGGAGTG 59.055 52.381 1.72 0.00 41.18 3.51
2490 4715 4.505566 GGGATTCTAGTTATGCAGATGCCA 60.506 45.833 1.72 0.00 41.18 4.92
2491 4716 4.006319 GGGATTCTAGTTATGCAGATGCC 58.994 47.826 1.72 0.00 41.18 4.40
2494 4719 5.894298 TGTGGGATTCTAGTTATGCAGAT 57.106 39.130 0.00 0.00 0.00 2.90
2496 4721 6.425114 GTGTATGTGGGATTCTAGTTATGCAG 59.575 42.308 0.00 0.00 0.00 4.41
2504 4729 4.098044 AGTGTCGTGTATGTGGGATTCTAG 59.902 45.833 0.00 0.00 0.00 2.43
2517 4742 2.894902 TGTTCTTGCAAGTGTCGTGTA 58.105 42.857 25.19 1.00 0.00 2.90
2522 4747 6.729187 AGACTTTATTGTTCTTGCAAGTGTC 58.271 36.000 25.19 16.32 0.00 3.67
2530 4755 8.081633 TGTTATGGCAAGACTTTATTGTTCTTG 58.918 33.333 6.26 6.26 40.29 3.02
2531 4756 8.177119 TGTTATGGCAAGACTTTATTGTTCTT 57.823 30.769 0.00 0.00 0.00 2.52
2532 4757 7.759489 TGTTATGGCAAGACTTTATTGTTCT 57.241 32.000 0.00 0.00 0.00 3.01
2533 4758 8.243426 TCATGTTATGGCAAGACTTTATTGTTC 58.757 33.333 0.00 0.00 0.00 3.18
2545 4846 1.745087 ACGCCTTCATGTTATGGCAAG 59.255 47.619 16.39 2.57 45.13 4.01
2546 4847 1.472082 CACGCCTTCATGTTATGGCAA 59.528 47.619 16.39 0.00 45.13 4.52
2547 4848 1.093972 CACGCCTTCATGTTATGGCA 58.906 50.000 16.39 0.00 45.13 4.92
2561 4862 2.540931 TCAAACTAAGTCGTTTCACGCC 59.459 45.455 0.00 0.00 42.21 5.68
2562 4863 3.847037 TCAAACTAAGTCGTTTCACGC 57.153 42.857 0.00 0.00 42.21 5.34
2563 4864 5.133707 TGTTCAAACTAAGTCGTTTCACG 57.866 39.130 0.00 0.00 44.19 4.35
2564 4865 5.963586 CCTTGTTCAAACTAAGTCGTTTCAC 59.036 40.000 0.00 0.00 35.06 3.18
2565 4866 5.875910 TCCTTGTTCAAACTAAGTCGTTTCA 59.124 36.000 0.00 0.00 35.06 2.69
2566 4867 6.354039 TCCTTGTTCAAACTAAGTCGTTTC 57.646 37.500 0.00 0.00 35.06 2.78
2567 4868 6.596497 TCTTCCTTGTTCAAACTAAGTCGTTT 59.404 34.615 0.00 0.00 37.58 3.60
2568 4869 6.110707 TCTTCCTTGTTCAAACTAAGTCGTT 58.889 36.000 0.00 0.00 0.00 3.85
2574 4875 6.661805 AGGTTGTTCTTCCTTGTTCAAACTAA 59.338 34.615 0.00 0.00 32.26 2.24
2581 4882 5.131067 ACCTTAGGTTGTTCTTCCTTGTTC 58.869 41.667 0.00 0.00 35.51 3.18
2586 4887 3.599348 AGGACCTTAGGTTGTTCTTCCT 58.401 45.455 4.99 2.26 35.25 3.36
2587 4888 4.776308 TCTAGGACCTTAGGTTGTTCTTCC 59.224 45.833 4.99 0.00 35.25 3.46
2588 4889 5.997384 TCTAGGACCTTAGGTTGTTCTTC 57.003 43.478 4.99 0.00 35.25 2.87
2596 4899 4.313020 TCGTTCTTCTAGGACCTTAGGT 57.687 45.455 2.34 2.34 39.44 3.08
2598 4901 6.452494 TGAATCGTTCTTCTAGGACCTTAG 57.548 41.667 0.00 0.00 0.00 2.18
2608 4911 6.990349 TGGTTTAGTCTTTGAATCGTTCTTCT 59.010 34.615 0.00 0.00 0.00 2.85
2614 4917 6.316390 GGATGATGGTTTAGTCTTTGAATCGT 59.684 38.462 0.00 0.00 0.00 3.73
2619 4922 5.357878 GCATGGATGATGGTTTAGTCTTTGA 59.642 40.000 0.00 0.00 31.99 2.69
2624 4927 4.825546 CAGCATGGATGATGGTTTAGTC 57.174 45.455 0.00 0.00 40.98 2.59
2668 4972 2.613026 TTGTATACCATGGTGGAGCG 57.387 50.000 28.17 0.00 40.96 5.03
2727 5041 8.624367 TGAAAACATAAACGGATCCTTCTTTA 57.376 30.769 10.75 9.04 0.00 1.85
2730 5044 6.149474 CACTGAAAACATAAACGGATCCTTCT 59.851 38.462 10.75 0.00 0.00 2.85
2731 5045 6.148811 TCACTGAAAACATAAACGGATCCTTC 59.851 38.462 10.75 3.99 0.00 3.46
2732 5046 6.001460 TCACTGAAAACATAAACGGATCCTT 58.999 36.000 10.75 0.00 0.00 3.36
2735 5049 5.411669 AGGTCACTGAAAACATAAACGGATC 59.588 40.000 0.00 0.00 0.00 3.36
2737 5051 4.710324 AGGTCACTGAAAACATAAACGGA 58.290 39.130 0.00 0.00 0.00 4.69
2738 5052 5.432885 AAGGTCACTGAAAACATAAACGG 57.567 39.130 0.00 0.00 0.00 4.44
2748 5062 3.141398 CAGCTAGCAAAGGTCACTGAAA 58.859 45.455 18.83 0.00 32.16 2.69
2752 5066 1.694150 TGTCAGCTAGCAAAGGTCACT 59.306 47.619 18.83 0.00 32.16 3.41
2761 5076 3.942829 AGCAATAACTTGTCAGCTAGCA 58.057 40.909 18.83 0.00 34.69 3.49
2762 5077 4.954092 AAGCAATAACTTGTCAGCTAGC 57.046 40.909 6.62 6.62 34.69 3.42
2781 5096 9.608617 TGCTTTTACGAGAATATATCGAGTAAG 57.391 33.333 15.05 13.62 42.76 2.34
2791 5106 9.450807 GCACATAAAATGCTTTTACGAGAATAT 57.549 29.630 0.00 0.00 40.08 1.28
2792 5107 8.454894 TGCACATAAAATGCTTTTACGAGAATA 58.545 29.630 0.00 0.00 43.77 1.75
2795 5110 6.247727 TGCACATAAAATGCTTTTACGAGA 57.752 33.333 0.00 0.00 43.77 4.04
2796 5111 6.197096 GGATGCACATAAAATGCTTTTACGAG 59.803 38.462 0.00 0.00 43.77 4.18
2797 5112 6.033341 GGATGCACATAAAATGCTTTTACGA 58.967 36.000 0.00 0.00 43.77 3.43
2799 5114 5.276348 GCGGATGCACATAAAATGCTTTTAC 60.276 40.000 0.00 0.00 43.77 2.01
2800 5115 4.803088 GCGGATGCACATAAAATGCTTTTA 59.197 37.500 0.00 1.42 43.77 1.52
2801 5116 3.618150 GCGGATGCACATAAAATGCTTTT 59.382 39.130 0.00 0.00 43.77 2.27
2802 5117 3.119029 AGCGGATGCACATAAAATGCTTT 60.119 39.130 0.00 0.00 46.23 3.51
2803 5118 2.428171 AGCGGATGCACATAAAATGCTT 59.572 40.909 0.00 0.00 46.23 3.91
2818 5149 0.940126 GCATTTGTCGATCAGCGGAT 59.060 50.000 0.00 0.00 41.33 4.18
2822 5153 2.674852 TCAAGAGCATTTGTCGATCAGC 59.325 45.455 0.00 0.00 0.00 4.26
2830 5161 7.858052 CTCGTAAAAATTCAAGAGCATTTGT 57.142 32.000 0.00 0.00 0.00 2.83
2837 5168 5.675970 TGAACGCTCGTAAAAATTCAAGAG 58.324 37.500 0.00 0.00 0.00 2.85
2841 5172 4.059511 TCCTGAACGCTCGTAAAAATTCA 58.940 39.130 0.00 0.00 0.00 2.57
2845 5176 3.719924 TCTTCCTGAACGCTCGTAAAAA 58.280 40.909 0.00 0.00 0.00 1.94
2886 5217 7.783090 TGTTCTTCATCTTCTCAGCATATTC 57.217 36.000 0.00 0.00 0.00 1.75
2891 5222 6.238842 CCTTTTTGTTCTTCATCTTCTCAGCA 60.239 38.462 0.00 0.00 0.00 4.41
2930 5261 3.164268 TGCTCTCTTCTCTTCAGCTTCT 58.836 45.455 0.00 0.00 0.00 2.85
2993 5324 1.009829 GGTACTTTGCTGCCATCTCG 58.990 55.000 0.00 0.00 0.00 4.04
3074 5405 4.095483 CACAGAGCAAATCACCTCCAATAC 59.905 45.833 0.00 0.00 0.00 1.89
3076 5407 3.087031 CACAGAGCAAATCACCTCCAAT 58.913 45.455 0.00 0.00 0.00 3.16
3088 5427 2.146342 GAAAGCAGCTACACAGAGCAA 58.854 47.619 0.00 0.00 45.43 3.91
3091 5430 2.758736 AGGAAAGCAGCTACACAGAG 57.241 50.000 0.00 0.00 0.00 3.35
3101 5440 4.758674 TCAGAACATGAAGAAGGAAAGCAG 59.241 41.667 0.00 0.00 34.02 4.24
3115 5454 7.760131 AAACAAGACACATTTTCAGAACATG 57.240 32.000 7.62 7.62 0.00 3.21
3134 5473 4.796312 GCAAACTTAACTCGCAGAAAACAA 59.204 37.500 0.00 0.00 34.09 2.83
3144 5483 6.366332 ACATGAAGAGTAGCAAACTTAACTCG 59.634 38.462 0.00 0.00 42.51 4.18
3198 5537 6.756299 TTACATGCTATGCAACATGAAGAA 57.244 33.333 25.60 16.36 45.23 2.52
3214 5553 6.956299 AAATCTGTCTTTGCAATTACATGC 57.044 33.333 13.05 0.00 46.58 4.06
3222 5561 4.081198 ACCACCAAAAATCTGTCTTTGCAA 60.081 37.500 0.00 0.00 32.31 4.08
3259 5598 1.455786 CTTAGACAACGCGAACAGTGG 59.544 52.381 15.93 0.00 33.90 4.00
3262 5601 3.242518 TGATCTTAGACAACGCGAACAG 58.757 45.455 15.93 1.12 0.00 3.16
3364 5761 3.555527 TCCATGAGGCAAGAAGAGATG 57.444 47.619 0.00 0.00 33.74 2.90
3376 5773 9.902684 AGCATCTTATAGATAAAATCCATGAGG 57.097 33.333 0.00 0.00 32.12 3.86
3389 5786 9.319060 TCATGGAAAGAGTAGCATCTTATAGAT 57.681 33.333 0.00 0.00 38.59 1.98
3391 5788 8.363390 TGTCATGGAAAGAGTAGCATCTTATAG 58.637 37.037 0.00 0.00 38.59 1.31
3434 5835 4.213482 GTCATTACCAAGACCACACACTTC 59.787 45.833 0.00 0.00 0.00 3.01
3435 5836 4.134563 GTCATTACCAAGACCACACACTT 58.865 43.478 0.00 0.00 0.00 3.16
3456 5857 1.475034 CCTGTTGCCTACATATGCCGT 60.475 52.381 1.58 0.00 35.85 5.68
3457 5858 1.202639 TCCTGTTGCCTACATATGCCG 60.203 52.381 1.58 0.00 35.85 5.69
3470 5871 9.627123 TCTTTGGTATATCCTTTATTCCTGTTG 57.373 33.333 0.00 0.00 37.07 3.33
3481 5888 5.440610 CCTTGCTGTCTTTGGTATATCCTT 58.559 41.667 0.00 0.00 37.07 3.36
3490 5897 0.111253 AGTCCCCTTGCTGTCTTTGG 59.889 55.000 0.00 0.00 0.00 3.28
3499 5906 2.124277 AATTCGGTAAGTCCCCTTGC 57.876 50.000 0.00 0.00 33.03 4.01
3518 5925 5.506649 GGCGAACTTGTTAGGTTCAATTCAA 60.507 40.000 7.24 0.00 41.99 2.69
3519 5926 4.023536 GGCGAACTTGTTAGGTTCAATTCA 60.024 41.667 7.24 0.00 41.99 2.57
3520 5927 4.023536 TGGCGAACTTGTTAGGTTCAATTC 60.024 41.667 7.24 0.00 41.99 2.17
3521 5928 3.886505 TGGCGAACTTGTTAGGTTCAATT 59.113 39.130 7.24 0.00 41.99 2.32
3522 5929 3.252458 GTGGCGAACTTGTTAGGTTCAAT 59.748 43.478 7.24 0.00 41.99 2.57
3605 6012 5.063204 ACATTCATACCCGTATCAACCATG 58.937 41.667 0.00 0.00 0.00 3.66
3606 6013 5.163248 TGACATTCATACCCGTATCAACCAT 60.163 40.000 0.00 0.00 0.00 3.55
3607 6014 4.162509 TGACATTCATACCCGTATCAACCA 59.837 41.667 0.00 0.00 0.00 3.67
3608 6015 4.699637 TGACATTCATACCCGTATCAACC 58.300 43.478 0.00 0.00 0.00 3.77
3609 6016 6.073222 GGAATGACATTCATACCCGTATCAAC 60.073 42.308 25.59 3.65 41.03 3.18
3610 6017 5.995282 GGAATGACATTCATACCCGTATCAA 59.005 40.000 25.59 0.00 41.03 2.57
3611 6018 5.071115 TGGAATGACATTCATACCCGTATCA 59.929 40.000 25.59 10.39 41.03 2.15
3612 6019 5.408604 GTGGAATGACATTCATACCCGTATC 59.591 44.000 25.59 8.22 41.03 2.24
3613 6020 5.163248 TGTGGAATGACATTCATACCCGTAT 60.163 40.000 25.59 0.00 41.03 3.06
3614 6021 4.162509 TGTGGAATGACATTCATACCCGTA 59.837 41.667 25.59 8.72 41.03 4.02
3615 6022 3.054728 TGTGGAATGACATTCATACCCGT 60.055 43.478 25.59 0.00 41.03 5.28
3616 6023 3.540617 TGTGGAATGACATTCATACCCG 58.459 45.455 25.59 0.00 41.03 5.28
3617 6024 3.885297 CCTGTGGAATGACATTCATACCC 59.115 47.826 25.59 12.06 41.03 3.69
3618 6025 3.316308 GCCTGTGGAATGACATTCATACC 59.684 47.826 25.59 12.39 41.03 2.73
3619 6026 3.947196 TGCCTGTGGAATGACATTCATAC 59.053 43.478 25.59 22.34 41.03 2.39
3620 6027 3.947196 GTGCCTGTGGAATGACATTCATA 59.053 43.478 25.59 13.63 41.03 2.15
3621 6028 2.756760 GTGCCTGTGGAATGACATTCAT 59.243 45.455 25.59 0.00 41.03 2.57
3622 6029 2.161855 GTGCCTGTGGAATGACATTCA 58.838 47.619 25.59 11.94 41.03 2.57
3623 6030 2.161855 TGTGCCTGTGGAATGACATTC 58.838 47.619 18.24 18.24 38.55 2.67
3624 6031 2.291209 TGTGCCTGTGGAATGACATT 57.709 45.000 0.00 0.00 0.00 2.71
3625 6032 2.097036 CATGTGCCTGTGGAATGACAT 58.903 47.619 0.00 0.00 0.00 3.06
3626 6033 1.202915 ACATGTGCCTGTGGAATGACA 60.203 47.619 0.00 0.00 0.00 3.58
3627 6034 1.538047 ACATGTGCCTGTGGAATGAC 58.462 50.000 0.00 0.00 0.00 3.06
3628 6035 2.291209 AACATGTGCCTGTGGAATGA 57.709 45.000 0.00 0.00 0.00 2.57
3629 6036 3.346315 TCTAACATGTGCCTGTGGAATG 58.654 45.455 0.00 0.00 0.00 2.67
3630 6037 3.614092 CTCTAACATGTGCCTGTGGAAT 58.386 45.455 0.00 0.00 0.00 3.01
3631 6038 2.290260 CCTCTAACATGTGCCTGTGGAA 60.290 50.000 0.00 0.00 0.00 3.53
3632 6039 1.278985 CCTCTAACATGTGCCTGTGGA 59.721 52.381 0.00 0.00 0.00 4.02
3633 6040 1.278985 TCCTCTAACATGTGCCTGTGG 59.721 52.381 0.00 1.10 0.00 4.17
3634 6041 2.768253 TCCTCTAACATGTGCCTGTG 57.232 50.000 0.00 0.00 0.00 3.66
3635 6042 2.681976 GCATCCTCTAACATGTGCCTGT 60.682 50.000 0.00 0.00 0.00 4.00
3636 6043 1.945394 GCATCCTCTAACATGTGCCTG 59.055 52.381 0.00 0.00 0.00 4.85
3637 6044 1.561076 TGCATCCTCTAACATGTGCCT 59.439 47.619 0.00 0.00 0.00 4.75
3638 6045 2.042686 TGCATCCTCTAACATGTGCC 57.957 50.000 0.00 0.00 0.00 5.01
3639 6046 4.644103 AAATGCATCCTCTAACATGTGC 57.356 40.909 0.00 0.00 0.00 4.57
3640 6047 6.198650 TCAAAATGCATCCTCTAACATGTG 57.801 37.500 0.00 0.00 0.00 3.21
3641 6048 6.802608 CATCAAAATGCATCCTCTAACATGT 58.197 36.000 0.00 0.00 0.00 3.21
3671 6078 3.518590 GATGAAATGCAAAGGAGCTTGG 58.481 45.455 0.00 0.00 34.99 3.61
3768 6175 4.033129 TGTTTGTACTTTTCTTGTCGTCGG 59.967 41.667 0.00 0.00 0.00 4.79
3769 6176 5.133707 TGTTTGTACTTTTCTTGTCGTCG 57.866 39.130 0.00 0.00 0.00 5.12
3784 6191 6.628621 CGGTTCCCTACTCATGTATGTTTGTA 60.629 42.308 0.00 0.00 0.00 2.41
3808 6215 2.680913 GCCACCTGTAGTGCTTGCG 61.681 63.158 0.00 0.00 45.83 4.85
3840 6249 7.952671 AGCGATAGTAGTCAAGATCCAATTTA 58.047 34.615 0.00 0.00 39.35 1.40
3853 6262 4.617645 CAGCCGATTTAAGCGATAGTAGTC 59.382 45.833 3.56 0.00 39.35 2.59
3859 6268 1.508632 GCCAGCCGATTTAAGCGATA 58.491 50.000 3.56 0.00 0.00 2.92
3862 6271 1.376609 AAGGCCAGCCGATTTAAGCG 61.377 55.000 5.01 0.00 41.95 4.68
3979 6388 2.901192 TGTTGAGGAACCGGTGAATCTA 59.099 45.455 8.52 0.00 0.00 1.98
3989 6398 1.680249 GGCTGAGGATGTTGAGGAACC 60.680 57.143 0.00 0.00 0.00 3.62
4043 6452 2.094762 ATGTGTTGCCGTCTCTTACC 57.905 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.