Multiple sequence alignment - TraesCS6B01G265600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G265600
chr6B
100.000
3649
0
0
1
3649
477788103
477791751
0.000000e+00
6739
1
TraesCS6B01G265600
chr6A
94.655
2881
122
10
1
2872
446726408
446729265
0.000000e+00
4438
2
TraesCS6B01G265600
chr6A
91.553
438
22
5
3220
3649
446729618
446730048
1.130000e-164
590
3
TraesCS6B01G265600
chr6A
84.709
327
20
14
2906
3224
446729262
446729566
2.130000e-77
300
4
TraesCS6B01G265600
chr6D
94.758
2213
101
9
668
2872
309951860
309954065
0.000000e+00
3430
5
TraesCS6B01G265600
chr6D
91.811
635
29
8
1
633
309951246
309951859
0.000000e+00
863
6
TraesCS6B01G265600
chr6D
91.076
437
23
5
3220
3649
309954439
309954866
8.790000e-161
577
7
TraesCS6B01G265600
chr6D
88.485
330
21
9
2906
3223
309954062
309954386
2.060000e-102
383
8
TraesCS6B01G265600
chr5A
84.395
314
49
0
2082
2395
32703181
32703494
3.540000e-80
309
9
TraesCS6B01G265600
chr5A
76.776
366
82
3
1166
1530
32702683
32703046
6.180000e-48
202
10
TraesCS6B01G265600
chr5D
83.758
314
51
0
2082
2395
42922906
42923219
7.660000e-77
298
11
TraesCS6B01G265600
chr5D
76.602
359
82
2
1166
1523
42922393
42922750
2.870000e-46
196
12
TraesCS6B01G265600
chr5B
77.596
366
79
3
1166
1530
38168277
38167914
6.130000e-53
219
13
TraesCS6B01G265600
chr4A
78.662
314
65
2
2085
2397
598590780
598591092
1.330000e-49
207
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G265600
chr6B
477788103
477791751
3648
False
6739.00
6739
100.000000
1
3649
1
chr6B.!!$F1
3648
1
TraesCS6B01G265600
chr6A
446726408
446730048
3640
False
1776.00
4438
90.305667
1
3649
3
chr6A.!!$F1
3648
2
TraesCS6B01G265600
chr6D
309951246
309954866
3620
False
1313.25
3430
91.532500
1
3649
4
chr6D.!!$F1
3648
3
TraesCS6B01G265600
chr5A
32702683
32703494
811
False
255.50
309
80.585500
1166
2395
2
chr5A.!!$F1
1229
4
TraesCS6B01G265600
chr5D
42922393
42923219
826
False
247.00
298
80.180000
1166
2395
2
chr5D.!!$F1
1229
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
155
156
0.249868
TTGGTGCCTCTTCTGTGACG
60.250
55.000
0.00
0.0
0.0
4.35
F
157
158
0.601558
GGTGCCTCTTCTGTGACGTA
59.398
55.000
0.00
0.0
0.0
3.57
F
806
828
1.003355
ATGGCCACCTCACAACTCG
60.003
57.895
8.16
0.0
0.0
4.18
F
2461
2584
0.244450
ATGCTCCAAATGTGTTGCCG
59.756
50.000
0.00
0.0
0.0
5.69
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1384
1406
1.148273
GTGGTGACTGGTCCAGCAA
59.852
57.895
19.40
4.30
42.63
3.91
R
1483
1505
1.601903
GCGGTCAAATGTGTCAGTTGA
59.398
47.619
8.22
8.22
44.27
3.18
R
2573
2696
0.371301
CTAGCACGTAGTACGACGCA
59.629
55.000
29.56
19.73
46.05
5.24
R
3438
3631
1.065126
GGGCATAAGAAGCACCTCAGT
60.065
52.381
0.00
0.00
0.00
3.41
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
123
124
4.632688
AGGTCGTTTGGAATAATGGTAACG
59.367
41.667
0.00
0.00
39.55
3.18
151
152
3.228188
TGAATTTGGTGCCTCTTCTGT
57.772
42.857
0.00
0.00
0.00
3.41
152
153
2.886523
TGAATTTGGTGCCTCTTCTGTG
59.113
45.455
0.00
0.00
0.00
3.66
153
154
2.957402
ATTTGGTGCCTCTTCTGTGA
57.043
45.000
0.00
0.00
0.00
3.58
154
155
1.967319
TTTGGTGCCTCTTCTGTGAC
58.033
50.000
0.00
0.00
0.00
3.67
155
156
0.249868
TTGGTGCCTCTTCTGTGACG
60.250
55.000
0.00
0.00
0.00
4.35
156
157
1.367840
GGTGCCTCTTCTGTGACGT
59.632
57.895
0.00
0.00
0.00
4.34
157
158
0.601558
GGTGCCTCTTCTGTGACGTA
59.398
55.000
0.00
0.00
0.00
3.57
158
159
1.204941
GGTGCCTCTTCTGTGACGTAT
59.795
52.381
0.00
0.00
0.00
3.06
159
160
2.353803
GGTGCCTCTTCTGTGACGTATT
60.354
50.000
0.00
0.00
0.00
1.89
160
161
3.326747
GTGCCTCTTCTGTGACGTATTT
58.673
45.455
0.00
0.00
0.00
1.40
161
162
4.491676
GTGCCTCTTCTGTGACGTATTTA
58.508
43.478
0.00
0.00
0.00
1.40
162
163
5.109903
GTGCCTCTTCTGTGACGTATTTAT
58.890
41.667
0.00
0.00
0.00
1.40
163
164
5.005779
GTGCCTCTTCTGTGACGTATTTATG
59.994
44.000
0.00
0.00
0.00
1.90
229
244
2.555199
CTCCATTCCGATCCACTGTTC
58.445
52.381
0.00
0.00
0.00
3.18
340
355
4.020839
TGCAGTTAAGAGGTACCCACTTAC
60.021
45.833
21.29
17.19
36.66
2.34
398
413
8.439971
AGGACCAGTAATTATCTGATGCAAATA
58.560
33.333
13.42
0.00
35.20
1.40
500
515
9.643693
AACAAAAGATTAATTGCTTATGTGGAG
57.356
29.630
0.00
0.00
0.00
3.86
546
561
9.076596
GTAATATTTGAATGGCAAGTTCAAGAC
57.923
33.333
14.02
7.28
43.90
3.01
583
598
4.022762
TCCACAACCATAAATTCACAACCG
60.023
41.667
0.00
0.00
0.00
4.44
767
789
3.612860
CCGGACTTAGAAATGAGTTGACG
59.387
47.826
0.00
0.00
0.00
4.35
806
828
1.003355
ATGGCCACCTCACAACTCG
60.003
57.895
8.16
0.00
0.00
4.18
861
883
9.981460
ATTTTCCTTACAAGTCTATGGAAGAAT
57.019
29.630
0.87
0.00
42.81
2.40
888
910
6.577427
CGCAAAGATTTGTTTAGGAGTTACAC
59.423
38.462
7.12
0.00
40.24
2.90
889
911
7.519970
CGCAAAGATTTGTTTAGGAGTTACACT
60.520
37.037
7.12
0.00
40.24
3.55
890
912
8.780249
GCAAAGATTTGTTTAGGAGTTACACTA
58.220
33.333
7.12
0.00
40.24
2.74
986
1008
8.523523
TTCACAATTTGATCTAACTTTGCATG
57.476
30.769
2.79
0.00
32.84
4.06
1096
1118
3.644966
TGAGAAACAAAGGTGGTGTCT
57.355
42.857
0.00
0.00
0.00
3.41
1102
1124
1.308998
CAAAGGTGGTGTCTGGTCAC
58.691
55.000
0.00
0.00
37.57
3.67
1120
1142
4.181578
GTCACGAGCAAAGTATGTGGTAT
58.818
43.478
0.00
0.00
31.55
2.73
1137
1159
2.609491
GGTATCAACGTGTGCAGTCTCA
60.609
50.000
0.00
0.00
0.00
3.27
1290
1312
1.164041
CGTTGGAACCCGCTGAACTT
61.164
55.000
0.00
0.00
0.00
2.66
1356
1378
3.443681
GGTTCACTACATTGGGGATTGTG
59.556
47.826
0.00
0.00
0.00
3.33
1384
1406
1.140052
TGGACAACGACAATGTGACCT
59.860
47.619
0.00
0.00
0.00
3.85
1483
1505
0.772124
TGCTGAGGACCTCCCCTTTT
60.772
55.000
19.11
0.00
36.49
2.27
1598
1620
4.954875
ACTGATCTTATACCAGCTTGAGC
58.045
43.478
0.00
0.00
42.49
4.26
1648
1670
5.869888
CCTTTCCTGTTGCTACTTACTACTG
59.130
44.000
0.00
0.00
0.00
2.74
1735
1757
7.496346
TTACTTGACTAAATCCATCTGACCT
57.504
36.000
0.00
0.00
0.00
3.85
1844
1866
4.468713
TGTTTCCAGTTGTCCATGATTCA
58.531
39.130
0.00
0.00
0.00
2.57
1890
1912
5.946942
ACTCTGCTGGAAGAAATGATCTA
57.053
39.130
0.00
0.00
37.42
1.98
1891
1913
6.305272
ACTCTGCTGGAAGAAATGATCTAA
57.695
37.500
0.00
0.00
37.42
2.10
1892
1914
6.897986
ACTCTGCTGGAAGAAATGATCTAAT
58.102
36.000
0.00
0.00
37.42
1.73
1893
1915
7.344913
ACTCTGCTGGAAGAAATGATCTAATT
58.655
34.615
0.00
0.00
37.42
1.40
1946
1968
5.424252
ACAGATACCTTTGGTCGATCCTTTA
59.576
40.000
0.00
0.00
37.09
1.85
1947
1969
6.099845
ACAGATACCTTTGGTCGATCCTTTAT
59.900
38.462
0.00
0.00
37.09
1.40
1951
1973
9.503399
GATACCTTTGGTCGATCCTTTATTATT
57.497
33.333
0.00
0.00
37.09
1.40
1965
1991
8.348285
TCCTTTATTATTTGTTAAGCTGCTGT
57.652
30.769
1.35
0.00
0.00
4.40
2024
2051
9.679661
TGGCTTAGATTTTATTATTGTGAGTCA
57.320
29.630
0.00
0.00
0.00
3.41
2034
2061
6.683974
ATTATTGTGAGTCAAGTGCCATAC
57.316
37.500
0.00
0.00
39.55
2.39
2228
2351
1.742761
CCGACATGTGGATGCTCTTT
58.257
50.000
9.73
0.00
32.14
2.52
2232
2355
1.637553
ACATGTGGATGCTCTTTCCCT
59.362
47.619
0.00
0.00
32.14
4.20
2397
2520
0.541863
CGACTCCCCTTTGCAGGTAT
59.458
55.000
0.00
0.00
38.79
2.73
2427
2550
0.246635
TCCGTAGCTGCCAGACTTTC
59.753
55.000
0.00
0.00
0.00
2.62
2445
2568
6.150809
AGACTTTCTTTTCTCCATCTCAATGC
59.849
38.462
0.00
0.00
0.00
3.56
2451
2574
4.305539
TTCTCCATCTCAATGCTCCAAA
57.694
40.909
0.00
0.00
0.00
3.28
2459
2582
2.991190
CTCAATGCTCCAAATGTGTTGC
59.009
45.455
0.00
0.00
0.00
4.17
2461
2584
0.244450
ATGCTCCAAATGTGTTGCCG
59.756
50.000
0.00
0.00
0.00
5.69
2469
2592
3.364964
CCAAATGTGTTGCCGTCTCTTAC
60.365
47.826
0.00
0.00
0.00
2.34
2470
2593
2.094762
ATGTGTTGCCGTCTCTTACC
57.905
50.000
0.00
0.00
0.00
2.85
2524
2647
1.680249
GGCTGAGGATGTTGAGGAACC
60.680
57.143
0.00
0.00
0.00
3.62
2534
2657
2.901192
TGTTGAGGAACCGGTGAATCTA
59.099
45.455
8.52
0.00
0.00
1.98
2651
2774
1.376609
AAGGCCAGCCGATTTAAGCG
61.377
55.000
5.01
0.00
41.95
4.68
2654
2777
1.508632
GCCAGCCGATTTAAGCGATA
58.491
50.000
3.56
0.00
0.00
2.92
2660
2783
4.617645
CAGCCGATTTAAGCGATAGTAGTC
59.382
45.833
3.56
0.00
39.35
2.59
2673
2796
7.952671
AGCGATAGTAGTCAAGATCCAATTTA
58.047
34.615
0.00
0.00
39.35
1.40
2705
2830
2.680913
GCCACCTGTAGTGCTTGCG
61.681
63.158
0.00
0.00
45.83
4.85
2729
2854
6.628621
CGGTTCCCTACTCATGTATGTTTGTA
60.629
42.308
0.00
0.00
0.00
2.41
2744
2869
5.133707
TGTTTGTACTTTTCTTGTCGTCG
57.866
39.130
0.00
0.00
0.00
5.12
2745
2870
4.033129
TGTTTGTACTTTTCTTGTCGTCGG
59.967
41.667
0.00
0.00
0.00
4.79
2842
2967
3.518590
GATGAAATGCAAAGGAGCTTGG
58.481
45.455
0.00
0.00
34.99
3.61
2872
2997
6.802608
CATCAAAATGCATCCTCTAACATGT
58.197
36.000
0.00
0.00
0.00
3.21
2873
2998
6.198650
TCAAAATGCATCCTCTAACATGTG
57.801
37.500
0.00
0.00
0.00
3.21
2874
2999
4.644103
AAATGCATCCTCTAACATGTGC
57.356
40.909
0.00
0.00
0.00
4.57
2875
3000
2.042686
TGCATCCTCTAACATGTGCC
57.957
50.000
0.00
0.00
0.00
5.01
2876
3001
1.561076
TGCATCCTCTAACATGTGCCT
59.439
47.619
0.00
0.00
0.00
4.75
2877
3002
1.945394
GCATCCTCTAACATGTGCCTG
59.055
52.381
0.00
0.00
0.00
4.85
2878
3003
2.681976
GCATCCTCTAACATGTGCCTGT
60.682
50.000
0.00
0.00
0.00
4.00
2879
3004
2.768253
TCCTCTAACATGTGCCTGTG
57.232
50.000
0.00
0.00
0.00
3.66
2880
3005
1.278985
TCCTCTAACATGTGCCTGTGG
59.721
52.381
0.00
1.10
0.00
4.17
2881
3006
1.278985
CCTCTAACATGTGCCTGTGGA
59.721
52.381
0.00
0.00
0.00
4.02
2882
3007
2.290260
CCTCTAACATGTGCCTGTGGAA
60.290
50.000
0.00
0.00
0.00
3.53
2883
3008
3.614092
CTCTAACATGTGCCTGTGGAAT
58.386
45.455
0.00
0.00
0.00
3.01
2884
3009
3.346315
TCTAACATGTGCCTGTGGAATG
58.654
45.455
0.00
0.00
0.00
2.67
2885
3010
2.291209
AACATGTGCCTGTGGAATGA
57.709
45.000
0.00
0.00
0.00
2.57
2886
3011
1.538047
ACATGTGCCTGTGGAATGAC
58.462
50.000
0.00
0.00
0.00
3.06
2887
3012
1.202915
ACATGTGCCTGTGGAATGACA
60.203
47.619
0.00
0.00
0.00
3.58
2888
3013
2.097036
CATGTGCCTGTGGAATGACAT
58.903
47.619
0.00
0.00
0.00
3.06
2889
3014
2.291209
TGTGCCTGTGGAATGACATT
57.709
45.000
0.00
0.00
0.00
2.71
2890
3015
2.161855
TGTGCCTGTGGAATGACATTC
58.838
47.619
18.24
18.24
38.55
2.67
2891
3016
2.161855
GTGCCTGTGGAATGACATTCA
58.838
47.619
25.59
11.94
41.03
2.57
2892
3017
2.756760
GTGCCTGTGGAATGACATTCAT
59.243
45.455
25.59
0.00
41.03
2.57
2893
3018
3.947196
GTGCCTGTGGAATGACATTCATA
59.053
43.478
25.59
13.63
41.03
2.15
2894
3019
3.947196
TGCCTGTGGAATGACATTCATAC
59.053
43.478
25.59
22.34
41.03
2.39
2895
3020
3.316308
GCCTGTGGAATGACATTCATACC
59.684
47.826
25.59
12.39
41.03
2.73
2896
3021
3.885297
CCTGTGGAATGACATTCATACCC
59.115
47.826
25.59
12.06
41.03
3.69
2897
3022
3.540617
TGTGGAATGACATTCATACCCG
58.459
45.455
25.59
0.00
41.03
5.28
2898
3023
3.054728
TGTGGAATGACATTCATACCCGT
60.055
43.478
25.59
0.00
41.03
5.28
2899
3024
4.162509
TGTGGAATGACATTCATACCCGTA
59.837
41.667
25.59
8.72
41.03
4.02
2900
3025
5.163248
TGTGGAATGACATTCATACCCGTAT
60.163
40.000
25.59
0.00
41.03
3.06
2901
3026
5.408604
GTGGAATGACATTCATACCCGTATC
59.591
44.000
25.59
8.22
41.03
2.24
2902
3027
5.071115
TGGAATGACATTCATACCCGTATCA
59.929
40.000
25.59
10.39
41.03
2.15
2903
3028
5.995282
GGAATGACATTCATACCCGTATCAA
59.005
40.000
25.59
0.00
41.03
2.57
2904
3029
6.073222
GGAATGACATTCATACCCGTATCAAC
60.073
42.308
25.59
3.65
41.03
3.18
2989
3114
2.215196
GTGGCGAACTTGTTAGGTTCA
58.785
47.619
7.24
0.00
41.99
3.18
2990
3115
2.614983
GTGGCGAACTTGTTAGGTTCAA
59.385
45.455
7.24
0.00
41.99
2.69
2991
3116
3.252458
GTGGCGAACTTGTTAGGTTCAAT
59.748
43.478
7.24
0.00
41.99
2.57
2992
3117
3.886505
TGGCGAACTTGTTAGGTTCAATT
59.113
39.130
7.24
0.00
41.99
2.32
2993
3118
4.023536
TGGCGAACTTGTTAGGTTCAATTC
60.024
41.667
7.24
0.00
41.99
2.17
3014
3139
2.124277
AATTCGGTAAGTCCCCTTGC
57.876
50.000
0.00
0.00
33.03
4.01
3023
3148
0.111253
AGTCCCCTTGCTGTCTTTGG
59.889
55.000
0.00
0.00
0.00
3.28
3032
3157
5.440610
CCTTGCTGTCTTTGGTATATCCTT
58.559
41.667
0.00
0.00
37.07
3.36
3042
3167
9.628500
GTCTTTGGTATATCCTTTATTCCTGTT
57.372
33.333
0.00
0.00
37.07
3.16
3043
3168
9.627123
TCTTTGGTATATCCTTTATTCCTGTTG
57.373
33.333
0.00
0.00
37.07
3.33
3056
3187
1.202639
TCCTGTTGCCTACATATGCCG
60.203
52.381
1.58
0.00
35.85
5.69
3057
3188
1.475034
CCTGTTGCCTACATATGCCGT
60.475
52.381
1.58
0.00
35.85
5.68
3078
3209
4.134563
GTCATTACCAAGACCACACACTT
58.865
43.478
0.00
0.00
0.00
3.16
3079
3210
4.213482
GTCATTACCAAGACCACACACTTC
59.787
45.833
0.00
0.00
0.00
3.01
3122
3253
8.363390
TGTCATGGAAAGAGTAGCATCTTATAG
58.637
37.037
0.00
0.00
38.59
1.31
3137
3272
9.902684
AGCATCTTATAGATAAAATCCATGAGG
57.097
33.333
0.00
0.00
32.12
3.86
3149
3284
3.555527
TCCATGAGGCAAGAAGAGATG
57.444
47.619
0.00
0.00
33.74
2.90
3251
3444
3.242518
TGATCTTAGACAACGCGAACAG
58.757
45.455
15.93
1.12
0.00
3.16
3254
3447
1.455786
CTTAGACAACGCGAACAGTGG
59.544
52.381
15.93
0.00
33.90
4.00
3291
3484
4.081198
ACCACCAAAAATCTGTCTTTGCAA
60.081
37.500
0.00
0.00
32.31
4.08
3299
3492
6.956299
AAATCTGTCTTTGCAATTACATGC
57.044
33.333
13.05
0.00
46.58
4.06
3315
3508
6.756299
TTACATGCTATGCAACATGAAGAA
57.244
33.333
25.60
16.36
45.23
2.52
3369
3562
6.366332
ACATGAAGAGTAGCAAACTTAACTCG
59.634
38.462
0.00
0.00
42.51
4.18
3379
3572
4.796312
GCAAACTTAACTCGCAGAAAACAA
59.204
37.500
0.00
0.00
34.09
2.83
3398
3591
7.760131
AAACAAGACACATTTTCAGAACATG
57.240
32.000
7.62
7.62
0.00
3.21
3412
3605
4.758674
TCAGAACATGAAGAAGGAAAGCAG
59.241
41.667
0.00
0.00
34.02
4.24
3422
3615
2.758736
AGGAAAGCAGCTACACAGAG
57.241
50.000
0.00
0.00
0.00
3.35
3425
3618
2.146342
GAAAGCAGCTACACAGAGCAA
58.854
47.619
0.00
0.00
45.43
3.91
3437
3630
3.087031
CACAGAGCAAATCACCTCCAAT
58.913
45.455
0.00
0.00
0.00
3.16
3438
3631
4.263462
ACACAGAGCAAATCACCTCCAATA
60.263
41.667
0.00
0.00
0.00
1.90
3520
3721
1.009829
GGTACTTTGCTGCCATCTCG
58.990
55.000
0.00
0.00
0.00
4.04
3583
3784
3.164268
TGCTCTCTTCTCTTCAGCTTCT
58.836
45.455
0.00
0.00
0.00
2.85
3622
3823
6.238842
CCTTTTTGTTCTTCATCTTCTCAGCA
60.239
38.462
0.00
0.00
0.00
4.41
3627
3828
7.783090
TGTTCTTCATCTTCTCAGCATATTC
57.217
36.000
0.00
0.00
0.00
1.75
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
123
124
6.272822
AGAGGCACCAAATTCATTTAGTTC
57.727
37.500
0.00
0.00
0.00
3.01
229
244
1.349026
TCTGCCAAGAGACCCAAGAAG
59.651
52.381
0.00
0.00
0.00
2.85
497
512
6.534634
ACACCTTATTTGCTGGATATACTCC
58.465
40.000
0.00
0.00
45.19
3.85
583
598
2.988010
TCTACTGATGTGGACATGGC
57.012
50.000
0.00
0.00
36.57
4.40
767
789
2.155279
GGAGACAAGTTCTTGGCCTTC
58.845
52.381
13.91
6.89
33.22
3.46
806
828
0.250234
TCACATACCAGTGCTCCTGC
59.750
55.000
0.00
0.00
40.06
4.85
861
883
6.385649
AACTCCTAAACAAATCTTTGCGAA
57.614
33.333
2.63
0.00
41.79
4.70
986
1008
3.442977
ACAAGCCATTTCTTGATCTCTGC
59.557
43.478
10.10
0.00
44.61
4.26
1096
1118
2.412870
CACATACTTTGCTCGTGACCA
58.587
47.619
0.00
0.00
0.00
4.02
1102
1124
4.259810
CGTTGATACCACATACTTTGCTCG
60.260
45.833
0.00
0.00
0.00
5.03
1120
1142
1.341209
AGATGAGACTGCACACGTTGA
59.659
47.619
0.00
0.00
0.00
3.18
1236
1258
1.565390
CCTCAGTCCAATGCCCTGGA
61.565
60.000
0.00
0.00
43.45
3.86
1290
1312
6.767524
ACAACCTTGAACTCATTGTTGTAA
57.232
33.333
18.46
0.00
43.14
2.41
1356
1378
1.225855
TGTCGTTGTCCACATGCTTC
58.774
50.000
0.00
0.00
0.00
3.86
1384
1406
1.148273
GTGGTGACTGGTCCAGCAA
59.852
57.895
19.40
4.30
42.63
3.91
1483
1505
1.601903
GCGGTCAAATGTGTCAGTTGA
59.398
47.619
8.22
8.22
44.27
3.18
1605
1627
9.997172
AGGAAAGGATGAAGGTTAAGAAAATAT
57.003
29.630
0.00
0.00
0.00
1.28
1648
1670
7.200455
GGCAATAACAAGGTATTGACATTACC
58.800
38.462
19.19
15.77
45.32
2.85
1720
1742
8.988060
TGTTTATACTGAGGTCAGATGGATTTA
58.012
33.333
13.99
0.00
46.59
1.40
1844
1866
9.965902
AGTATCAGGACTTCAATAACATTTCTT
57.034
29.630
0.00
0.00
0.00
2.52
1946
1968
7.925483
TGTTCAAACAGCAGCTTAACAAATAAT
59.075
29.630
0.00
0.00
34.30
1.28
1947
1969
7.261325
TGTTCAAACAGCAGCTTAACAAATAA
58.739
30.769
0.00
0.00
34.30
1.40
1951
1973
4.710423
TGTTCAAACAGCAGCTTAACAA
57.290
36.364
0.00
0.00
34.30
2.83
2034
2061
2.691409
TGAAACGGAGGCATAAGAGG
57.309
50.000
0.00
0.00
0.00
3.69
2228
2351
6.069323
ACTCTATGTACTCTTCTTCTGAGGGA
60.069
42.308
0.00
0.00
35.98
4.20
2232
2355
6.486056
ACCACTCTATGTACTCTTCTTCTGA
58.514
40.000
0.00
0.00
0.00
3.27
2397
2520
3.044235
CAGCTACGGATGCATGGAATA
57.956
47.619
2.46
0.00
0.00
1.75
2427
2550
4.267536
TGGAGCATTGAGATGGAGAAAAG
58.732
43.478
0.00
0.00
33.72
2.27
2445
2568
1.197721
GAGACGGCAACACATTTGGAG
59.802
52.381
0.00
0.00
0.00
3.86
2451
2574
1.338769
GGGTAAGAGACGGCAACACAT
60.339
52.381
0.00
0.00
0.00
3.21
2469
2592
2.674747
GCAGCAACAACATACCAATGGG
60.675
50.000
3.55
0.00
37.43
4.00
2470
2593
2.029200
TGCAGCAACAACATACCAATGG
60.029
45.455
0.00
0.00
37.43
3.16
2524
2647
1.536284
GGAAGGCGAGTAGATTCACCG
60.536
57.143
0.00
0.00
0.00
4.94
2534
2657
3.007973
GCGGAAGAGGAAGGCGAGT
62.008
63.158
0.00
0.00
0.00
4.18
2573
2696
0.371301
CTAGCACGTAGTACGACGCA
59.629
55.000
29.56
19.73
46.05
5.24
2651
2774
8.371699
AGCCTAAATTGGATCTTGACTACTATC
58.628
37.037
0.00
0.00
0.00
2.08
2654
2777
6.567602
AGCCTAAATTGGATCTTGACTACT
57.432
37.500
0.00
0.00
0.00
2.57
2660
2783
7.814264
ACATAGAAGCCTAAATTGGATCTTG
57.186
36.000
0.00
0.00
0.00
3.02
2729
2854
3.991367
AGATTCCGACGACAAGAAAAGT
58.009
40.909
0.00
0.00
0.00
2.66
2738
2863
3.369756
TGCATAAACAAGATTCCGACGAC
59.630
43.478
0.00
0.00
0.00
4.34
2744
2869
5.185828
AGTCCCTTTGCATAAACAAGATTCC
59.814
40.000
0.00
0.00
0.00
3.01
2745
2870
6.272822
AGTCCCTTTGCATAAACAAGATTC
57.727
37.500
0.00
0.00
0.00
2.52
2773
2898
2.699954
CCTCTACAATTCCGCAAGTGT
58.300
47.619
0.00
0.00
43.19
3.55
2842
2967
4.110482
GAGGATGCATTTTGATGCTTCAC
58.890
43.478
21.21
14.00
46.93
3.18
2868
2993
1.536940
TGTCATTCCACAGGCACATG
58.463
50.000
0.00
0.00
0.00
3.21
2869
2994
2.519771
ATGTCATTCCACAGGCACAT
57.480
45.000
0.00
0.00
0.00
3.21
2870
2995
2.161855
GAATGTCATTCCACAGGCACA
58.838
47.619
13.74
0.00
33.17
4.57
2871
2996
2.161855
TGAATGTCATTCCACAGGCAC
58.838
47.619
20.41
0.00
38.50
5.01
2872
2997
2.583024
TGAATGTCATTCCACAGGCA
57.417
45.000
20.41
0.55
38.50
4.75
2873
2998
3.316308
GGTATGAATGTCATTCCACAGGC
59.684
47.826
20.41
6.98
42.00
4.85
2874
2999
3.885297
GGGTATGAATGTCATTCCACAGG
59.115
47.826
20.41
0.00
43.55
4.00
2875
3000
3.561310
CGGGTATGAATGTCATTCCACAG
59.439
47.826
20.41
12.60
43.55
3.66
2876
3001
3.054728
ACGGGTATGAATGTCATTCCACA
60.055
43.478
20.41
5.62
43.55
4.17
2877
3002
3.541632
ACGGGTATGAATGTCATTCCAC
58.458
45.455
20.41
17.19
43.55
4.02
2878
3003
3.924114
ACGGGTATGAATGTCATTCCA
57.076
42.857
20.41
10.59
43.55
3.53
2879
3004
5.547465
TGATACGGGTATGAATGTCATTCC
58.453
41.667
20.41
7.01
41.78
3.01
2880
3005
6.073222
GGTTGATACGGGTATGAATGTCATTC
60.073
42.308
17.21
17.21
38.26
2.67
2881
3006
5.763204
GGTTGATACGGGTATGAATGTCATT
59.237
40.000
0.00
0.00
38.26
2.57
2882
3007
5.163248
TGGTTGATACGGGTATGAATGTCAT
60.163
40.000
0.00
0.00
40.72
3.06
2883
3008
4.162509
TGGTTGATACGGGTATGAATGTCA
59.837
41.667
0.00
0.00
0.00
3.58
2884
3009
4.699637
TGGTTGATACGGGTATGAATGTC
58.300
43.478
0.00
0.00
0.00
3.06
2885
3010
4.764050
TGGTTGATACGGGTATGAATGT
57.236
40.909
0.00
0.00
0.00
2.71
2886
3011
4.455533
CCATGGTTGATACGGGTATGAATG
59.544
45.833
2.57
0.00
0.00
2.67
2887
3012
4.104102
ACCATGGTTGATACGGGTATGAAT
59.896
41.667
13.00
0.00
0.00
2.57
2888
3013
3.456644
ACCATGGTTGATACGGGTATGAA
59.543
43.478
13.00
0.00
0.00
2.57
2889
3014
3.042682
ACCATGGTTGATACGGGTATGA
58.957
45.455
13.00
0.00
0.00
2.15
2890
3015
3.138304
CACCATGGTTGATACGGGTATG
58.862
50.000
16.84
0.00
0.00
2.39
2891
3016
3.042682
TCACCATGGTTGATACGGGTAT
58.957
45.455
16.84
0.00
0.00
2.73
2892
3017
2.468915
TCACCATGGTTGATACGGGTA
58.531
47.619
16.84
0.00
0.00
3.69
2893
3018
1.281419
TCACCATGGTTGATACGGGT
58.719
50.000
16.84
0.00
0.00
5.28
2894
3019
2.411628
TTCACCATGGTTGATACGGG
57.588
50.000
16.84
0.77
0.00
5.28
2895
3020
3.756434
AGTTTTCACCATGGTTGATACGG
59.244
43.478
16.84
1.62
0.00
4.02
2896
3021
4.722194
CAGTTTTCACCATGGTTGATACG
58.278
43.478
16.84
2.47
0.00
3.06
2897
3022
4.485163
GCAGTTTTCACCATGGTTGATAC
58.515
43.478
16.84
15.50
0.00
2.24
2898
3023
3.509575
GGCAGTTTTCACCATGGTTGATA
59.490
43.478
16.84
8.82
0.00
2.15
2899
3024
2.299867
GGCAGTTTTCACCATGGTTGAT
59.700
45.455
16.84
0.00
0.00
2.57
2900
3025
1.686052
GGCAGTTTTCACCATGGTTGA
59.314
47.619
16.84
13.57
0.00
3.18
2901
3026
1.411977
TGGCAGTTTTCACCATGGTTG
59.588
47.619
16.84
11.33
0.00
3.77
2902
3027
1.786937
TGGCAGTTTTCACCATGGTT
58.213
45.000
16.84
0.00
0.00
3.67
2903
3028
2.014010
ATGGCAGTTTTCACCATGGT
57.986
45.000
13.00
13.00
42.59
3.55
2904
3029
3.355378
TCTATGGCAGTTTTCACCATGG
58.645
45.455
11.19
11.19
43.93
3.66
2956
3081
1.153353
TCGCCACCGAATTTTCAGTC
58.847
50.000
0.00
0.00
41.17
3.51
2989
3114
4.930696
AGGGGACTTACCGAATTTGAATT
58.069
39.130
0.00
0.00
37.44
2.17
2990
3115
4.586306
AGGGGACTTACCGAATTTGAAT
57.414
40.909
0.00
0.00
37.44
2.57
3014
3139
9.277783
CAGGAATAAAGGATATACCAAAGACAG
57.722
37.037
0.00
0.00
42.04
3.51
3023
3148
8.154856
TGTAGGCAACAGGAATAAAGGATATAC
58.845
37.037
0.00
0.00
41.41
1.47
3032
3157
5.070001
GGCATATGTAGGCAACAGGAATAA
58.930
41.667
4.29
0.00
42.70
1.40
3042
3167
2.928801
AATGACGGCATATGTAGGCA
57.071
45.000
2.90
9.88
34.14
4.75
3043
3168
3.000727
GGTAATGACGGCATATGTAGGC
58.999
50.000
2.90
1.52
33.44
3.93
3056
3187
3.740115
AGTGTGTGGTCTTGGTAATGAC
58.260
45.455
0.00
0.00
0.00
3.06
3057
3188
4.141597
TGAAGTGTGTGGTCTTGGTAATGA
60.142
41.667
0.00
0.00
0.00
2.57
3078
3209
4.206375
TGACAATGCTTGTTTCCTCTTGA
58.794
39.130
3.56
0.00
45.52
3.02
3079
3210
4.572985
TGACAATGCTTGTTTCCTCTTG
57.427
40.909
3.56
0.00
45.52
3.02
3122
3253
6.769822
TCTCTTCTTGCCTCATGGATTTTATC
59.230
38.462
0.00
0.00
34.57
1.75
3137
3272
6.336566
TGTTCAGAGTATCATCTCTTCTTGC
58.663
40.000
0.00
0.00
42.10
4.01
3149
3284
5.840715
TCTGCATGAGATGTTCAGAGTATC
58.159
41.667
0.00
0.00
39.68
2.24
3236
3429
0.669619
TCCACTGTTCGCGTTGTCTA
59.330
50.000
5.77
0.00
0.00
2.59
3251
3444
6.294361
TGGTGGTACATATATAGCATCCAC
57.706
41.667
15.51
15.51
44.52
4.02
3291
3484
6.947644
TCTTCATGTTGCATAGCATGTAAT
57.052
33.333
19.15
0.00
43.52
1.89
3299
3492
5.180868
GGGAGCTATTCTTCATGTTGCATAG
59.819
44.000
0.00
0.00
0.00
2.23
3335
3528
8.940952
GTTTGCTACTCTTCATGTTATCTTTCT
58.059
33.333
0.00
0.00
0.00
2.52
3336
3529
8.940952
AGTTTGCTACTCTTCATGTTATCTTTC
58.059
33.333
0.00
0.00
28.23
2.62
3355
3548
4.095782
TGTTTTCTGCGAGTTAAGTTTGCT
59.904
37.500
9.14
0.00
0.00
3.91
3369
3562
6.035843
TCTGAAAATGTGTCTTGTTTTCTGC
58.964
36.000
10.11
0.00
40.62
4.26
3379
3572
7.255381
CCTTCTTCATGTTCTGAAAATGTGTCT
60.255
37.037
17.74
0.00
43.20
3.41
3398
3591
3.403038
TGTGTAGCTGCTTTCCTTCTTC
58.597
45.455
7.79
0.00
0.00
2.87
3405
3598
1.800805
TGCTCTGTGTAGCTGCTTTC
58.199
50.000
7.79
2.35
43.19
2.62
3409
3602
2.079158
TGATTTGCTCTGTGTAGCTGC
58.921
47.619
0.00
0.00
43.19
5.25
3412
3605
2.675348
GAGGTGATTTGCTCTGTGTAGC
59.325
50.000
0.00
0.00
43.08
3.58
3422
3615
3.629398
CCTCAGTATTGGAGGTGATTTGC
59.371
47.826
0.00
0.00
45.59
3.68
3437
3630
2.170607
GGGCATAAGAAGCACCTCAGTA
59.829
50.000
0.00
0.00
0.00
2.74
3438
3631
1.065126
GGGCATAAGAAGCACCTCAGT
60.065
52.381
0.00
0.00
0.00
3.41
3520
3721
2.070028
GAAGAAGTTCTCAAGGCCGAC
58.930
52.381
5.70
0.00
0.00
4.79
3622
3823
4.855340
TGGAAAAGAAGAAGGCCGAATAT
58.145
39.130
0.00
0.00
0.00
1.28
3627
3828
2.226674
GAGTTGGAAAAGAAGAAGGCCG
59.773
50.000
0.00
0.00
0.00
6.13
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.