Multiple sequence alignment - TraesCS6B01G265400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G265400 chr6B 100.000 5584 0 0 1 5584 477688165 477693748 0.000000e+00 10312.0
1 TraesCS6B01G265400 chr1B 95.226 1613 43 22 1971 3553 374849983 374851591 0.000000e+00 2521.0
2 TraesCS6B01G265400 chr1B 80.811 912 137 26 4677 5560 491223732 491224633 0.000000e+00 680.0
3 TraesCS6B01G265400 chr1B 84.746 118 11 6 3649 3763 615744806 615744693 1.640000e-20 111.0
4 TraesCS6B01G265400 chr1B 74.815 135 30 2 5454 5584 455201868 455202002 2.170000e-04 58.4
5 TraesCS6B01G265400 chr7B 96.747 1291 20 6 2300 3577 567612528 567611247 0.000000e+00 2132.0
6 TraesCS6B01G265400 chr7B 96.429 1064 22 7 2300 3356 567603078 567602024 0.000000e+00 1740.0
7 TraesCS6B01G265400 chr7B 84.702 621 87 5 4743 5361 424569783 424570397 1.030000e-171 614.0
8 TraesCS6B01G265400 chr7B 97.605 334 6 2 1971 2303 567613106 567612774 6.280000e-159 571.0
9 TraesCS6B01G265400 chr7B 96.997 333 9 1 1971 2303 567603654 567603323 4.890000e-155 558.0
10 TraesCS6B01G265400 chr7B 96.418 335 10 2 1968 2301 567611246 567611579 8.180000e-153 551.0
11 TraesCS6B01G265400 chr7B 91.935 62 4 1 4572 4633 513024332 513024392 9.970000e-13 86.1
12 TraesCS6B01G265400 chr4A 96.669 1291 25 6 2300 3575 453032760 453034047 0.000000e+00 2130.0
13 TraesCS6B01G265400 chr4A 83.086 674 95 13 4788 5446 499019556 499020225 3.720000e-166 595.0
14 TraesCS6B01G265400 chr4A 96.979 331 8 2 1972 2301 453034047 453033718 6.320000e-154 555.0
15 TraesCS6B01G265400 chr4A 96.375 331 11 1 1972 2301 453032396 453032726 1.370000e-150 544.0
16 TraesCS6B01G265400 chr2A 96.597 1293 25 7 2300 3577 558945944 558947232 0.000000e+00 2126.0
17 TraesCS6B01G265400 chr2A 96.396 1221 31 6 2304 3514 642979855 642978638 0.000000e+00 1999.0
18 TraesCS6B01G265400 chr2A 83.486 654 97 8 4717 5360 508115253 508115905 2.880000e-167 599.0
19 TraesCS6B01G265400 chr2A 96.677 331 9 2 1972 2301 558947230 558946901 2.940000e-152 549.0
20 TraesCS6B01G265400 chr2A 96.677 331 10 1 1972 2301 642978296 642978626 2.940000e-152 549.0
21 TraesCS6B01G265400 chr2A 93.377 151 9 1 1553 1703 612835035 612834886 7.280000e-54 222.0
22 TraesCS6B01G265400 chr2A 75.488 563 64 45 3658 4165 612834668 612834125 2.040000e-49 207.0
23 TraesCS6B01G265400 chr2A 80.150 267 34 9 5318 5566 187483704 187483439 1.240000e-41 182.0
24 TraesCS6B01G265400 chr2A 86.066 122 15 2 1574 1694 625243588 625243708 4.540000e-26 130.0
25 TraesCS6B01G265400 chr2A 73.392 342 57 17 5236 5547 726098693 726099030 4.600000e-16 97.1
26 TraesCS6B01G265400 chr2A 88.525 61 7 0 4573 4633 276306278 276306218 2.160000e-09 75.0
27 TraesCS6B01G265400 chr2A 81.111 90 17 0 5446 5535 718621159 718621248 7.760000e-09 73.1
28 TraesCS6B01G265400 chr6A 94.444 1296 43 11 658 1950 446520337 446521606 0.000000e+00 1967.0
29 TraesCS6B01G265400 chr6A 90.434 1244 94 16 2314 3541 210790694 210791928 0.000000e+00 1615.0
30 TraesCS6B01G265400 chr6A 97.113 762 15 2 3576 4330 446521611 446522372 0.000000e+00 1279.0
31 TraesCS6B01G265400 chr6A 96.407 334 11 1 1969 2301 573151029 573150696 2.940000e-152 549.0
32 TraesCS6B01G265400 chr6A 95.082 122 6 0 4442 4563 446522708 446522829 5.710000e-45 193.0
33 TraesCS6B01G265400 chr6D 95.431 1182 35 12 802 1971 309718299 309719473 0.000000e+00 1866.0
34 TraesCS6B01G265400 chr6D 93.763 994 23 11 3578 4563 309719468 309720430 0.000000e+00 1456.0
35 TraesCS6B01G265400 chr6D 91.850 638 49 3 167 802 309717619 309718255 0.000000e+00 887.0
36 TraesCS6B01G265400 chr6D 80.830 892 116 34 4677 5532 311806878 311806006 0.000000e+00 649.0
37 TraesCS6B01G265400 chr2B 91.176 1292 83 16 2308 3575 799052137 799053421 0.000000e+00 1725.0
38 TraesCS6B01G265400 chr2B 92.681 1175 57 14 2427 3578 183313112 183311944 0.000000e+00 1666.0
39 TraesCS6B01G265400 chr2B 92.840 405 15 4 3184 3575 776065871 776065468 4.850000e-160 575.0
40 TraesCS6B01G265400 chr2B 96.997 333 8 2 1972 2303 776065468 776065799 4.890000e-155 558.0
41 TraesCS6B01G265400 chr2B 91.837 147 12 0 1557 1703 550214183 550214037 7.330000e-49 206.0
42 TraesCS6B01G265400 chr2B 77.865 384 39 30 3658 4012 550213837 550213471 4.410000e-46 196.0
43 TraesCS6B01G265400 chr2B 86.066 122 15 2 1574 1694 567034947 567035067 4.540000e-26 130.0
44 TraesCS6B01G265400 chr2B 80.909 110 19 2 5459 5566 506623947 506624056 9.970000e-13 86.1
45 TraesCS6B01G265400 chr2D 84.198 848 103 21 4741 5566 7094565 7093727 0.000000e+00 795.0
46 TraesCS6B01G265400 chr2D 92.715 151 10 1 1553 1703 471055955 471055806 3.390000e-52 217.0
47 TraesCS6B01G265400 chr2D 77.261 387 39 32 3658 4012 471055606 471055237 1.240000e-41 182.0
48 TraesCS6B01G265400 chr2D 86.066 122 15 2 1574 1694 482790051 482790171 4.540000e-26 130.0
49 TraesCS6B01G265400 chr2D 86.066 122 15 2 1574 1694 636638938 636639058 4.540000e-26 130.0
50 TraesCS6B01G265400 chr2D 84.553 123 18 1 5445 5566 535582966 535582844 2.730000e-23 121.0
51 TraesCS6B01G265400 chr2D 83.607 122 17 3 3643 3763 417626485 417626604 1.640000e-20 111.0
52 TraesCS6B01G265400 chr5D 83.429 869 109 22 4741 5582 263162111 263162971 0.000000e+00 774.0
53 TraesCS6B01G265400 chr5D 82.924 855 108 18 4717 5553 81261435 81260601 0.000000e+00 736.0
54 TraesCS6B01G265400 chr5D 83.242 549 85 5 2 547 276262642 276263186 1.080000e-136 497.0
55 TraesCS6B01G265400 chr5D 82.051 117 19 2 1108 1223 342713139 342713024 1.280000e-16 99.0
56 TraesCS6B01G265400 chr5D 80.870 115 20 2 1109 1222 238557792 238557679 7.710000e-14 89.8
57 TraesCS6B01G265400 chr4D 83.237 865 119 17 4717 5560 152896455 152895596 0.000000e+00 771.0
58 TraesCS6B01G265400 chr4D 84.779 657 95 5 4741 5392 312572639 312571983 0.000000e+00 654.0
59 TraesCS6B01G265400 chr4D 83.333 102 17 0 4575 4676 32065743 32065844 1.660000e-15 95.3
60 TraesCS6B01G265400 chr4D 88.462 78 7 2 5447 5523 374075447 374075523 5.960000e-15 93.5
61 TraesCS6B01G265400 chr5A 82.332 566 76 14 1 557 608449030 608449580 2.360000e-128 470.0
62 TraesCS6B01G265400 chr5A 80.870 115 20 2 1109 1222 316085020 316085133 7.710000e-14 89.8
63 TraesCS6B01G265400 chr5A 91.228 57 3 1 4573 4629 674218720 674218666 6.000000e-10 76.8
64 TraesCS6B01G265400 chr3D 81.917 553 86 8 15 564 141234573 141235114 6.590000e-124 455.0
65 TraesCS6B01G265400 chr3D 91.525 59 5 0 4573 4631 549287644 549287586 1.290000e-11 82.4
66 TraesCS6B01G265400 chr1D 97.619 84 2 0 1077 1160 329090960 329091043 1.620000e-30 145.0
67 TraesCS6B01G265400 chr1D 84.746 118 11 6 3649 3763 449660770 449660883 1.640000e-20 111.0
68 TraesCS6B01G265400 chr1D 79.661 118 21 3 5445 5560 300320076 300320192 1.290000e-11 82.4
69 TraesCS6B01G265400 chr1A 84.746 118 11 6 3649 3763 544928186 544928299 1.640000e-20 111.0
70 TraesCS6B01G265400 chr1A 86.957 69 9 0 4575 4643 564342685 564342753 1.670000e-10 78.7
71 TraesCS6B01G265400 chr3B 85.000 100 13 2 5452 5549 734147069 734146970 3.560000e-17 100.0
72 TraesCS6B01G265400 chr3B 80.508 118 16 6 1108 1220 103722711 103722596 3.580000e-12 84.2
73 TraesCS6B01G265400 chr3B 88.525 61 7 0 4565 4625 456113723 456113783 2.160000e-09 75.0
74 TraesCS6B01G265400 chr5B 82.051 117 19 2 1108 1223 402751663 402751548 1.280000e-16 99.0
75 TraesCS6B01G265400 chr5B 80.000 115 21 2 1109 1222 266501406 266501519 3.580000e-12 84.2
76 TraesCS6B01G265400 chr4B 84.091 88 14 0 4575 4662 464541073 464540986 9.970000e-13 86.1
77 TraesCS6B01G265400 chr4B 91.071 56 5 0 4570 4625 74668796 74668851 6.000000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G265400 chr6B 477688165 477693748 5583 False 10312.000000 10312 100.000000 1 5584 1 chr6B.!!$F1 5583
1 TraesCS6B01G265400 chr1B 374849983 374851591 1608 False 2521.000000 2521 95.226000 1971 3553 1 chr1B.!!$F1 1582
2 TraesCS6B01G265400 chr1B 491223732 491224633 901 False 680.000000 680 80.811000 4677 5560 1 chr1B.!!$F3 883
3 TraesCS6B01G265400 chr7B 567611247 567613106 1859 True 1351.500000 2132 97.176000 1971 3577 2 chr7B.!!$R2 1606
4 TraesCS6B01G265400 chr7B 567602024 567603654 1630 True 1149.000000 1740 96.713000 1971 3356 2 chr7B.!!$R1 1385
5 TraesCS6B01G265400 chr7B 424569783 424570397 614 False 614.000000 614 84.702000 4743 5361 1 chr7B.!!$F1 618
6 TraesCS6B01G265400 chr4A 453032396 453034047 1651 False 1337.000000 2130 96.522000 1972 3575 2 chr4A.!!$F2 1603
7 TraesCS6B01G265400 chr4A 499019556 499020225 669 False 595.000000 595 83.086000 4788 5446 1 chr4A.!!$F1 658
8 TraesCS6B01G265400 chr2A 558945944 558947232 1288 False 2126.000000 2126 96.597000 2300 3577 1 chr2A.!!$F2 1277
9 TraesCS6B01G265400 chr2A 642978638 642979855 1217 True 1999.000000 1999 96.396000 2304 3514 1 chr2A.!!$R4 1210
10 TraesCS6B01G265400 chr2A 508115253 508115905 652 False 599.000000 599 83.486000 4717 5360 1 chr2A.!!$F1 643
11 TraesCS6B01G265400 chr2A 612834125 612835035 910 True 214.500000 222 84.432500 1553 4165 2 chr2A.!!$R5 2612
12 TraesCS6B01G265400 chr6A 210790694 210791928 1234 False 1615.000000 1615 90.434000 2314 3541 1 chr6A.!!$F1 1227
13 TraesCS6B01G265400 chr6A 446520337 446522829 2492 False 1146.333333 1967 95.546333 658 4563 3 chr6A.!!$F2 3905
14 TraesCS6B01G265400 chr6D 309717619 309720430 2811 False 1403.000000 1866 93.681333 167 4563 3 chr6D.!!$F1 4396
15 TraesCS6B01G265400 chr6D 311806006 311806878 872 True 649.000000 649 80.830000 4677 5532 1 chr6D.!!$R1 855
16 TraesCS6B01G265400 chr2B 799052137 799053421 1284 False 1725.000000 1725 91.176000 2308 3575 1 chr2B.!!$F4 1267
17 TraesCS6B01G265400 chr2B 183311944 183313112 1168 True 1666.000000 1666 92.681000 2427 3578 1 chr2B.!!$R1 1151
18 TraesCS6B01G265400 chr2B 550213471 550214183 712 True 201.000000 206 84.851000 1557 4012 2 chr2B.!!$R3 2455
19 TraesCS6B01G265400 chr2D 7093727 7094565 838 True 795.000000 795 84.198000 4741 5566 1 chr2D.!!$R1 825
20 TraesCS6B01G265400 chr5D 263162111 263162971 860 False 774.000000 774 83.429000 4741 5582 1 chr5D.!!$F1 841
21 TraesCS6B01G265400 chr5D 81260601 81261435 834 True 736.000000 736 82.924000 4717 5553 1 chr5D.!!$R1 836
22 TraesCS6B01G265400 chr5D 276262642 276263186 544 False 497.000000 497 83.242000 2 547 1 chr5D.!!$F2 545
23 TraesCS6B01G265400 chr4D 152895596 152896455 859 True 771.000000 771 83.237000 4717 5560 1 chr4D.!!$R1 843
24 TraesCS6B01G265400 chr4D 312571983 312572639 656 True 654.000000 654 84.779000 4741 5392 1 chr4D.!!$R2 651
25 TraesCS6B01G265400 chr5A 608449030 608449580 550 False 470.000000 470 82.332000 1 557 1 chr5A.!!$F2 556
26 TraesCS6B01G265400 chr3D 141234573 141235114 541 False 455.000000 455 81.917000 15 564 1 chr3D.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 584 0.033405 AGCCAGTTCCTAGCGGTCTA 60.033 55.000 0.00 0.00 0.00 2.59 F
1001 1053 0.456312 CTCGACAGCTACGTTGGTCC 60.456 60.000 11.23 0.00 0.00 4.46 F
1792 1851 1.735920 CTATCGCCATGAGCTCGGC 60.736 63.158 19.55 19.55 45.28 5.54 F
1968 2028 4.284490 TCGTATACTCGGTAGTATCAGGGT 59.716 45.833 0.56 0.00 44.05 4.34 F
3178 3557 2.544685 CTGGATAGAAACACGAGCAGG 58.455 52.381 0.00 0.00 0.00 4.85 F
4379 5093 0.804933 GCGCGTGGGGAAGTAGTTAG 60.805 60.000 8.43 0.00 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1861 1.206849 TGCACAGACAGAACACAGTGA 59.793 47.619 7.81 0.0 0.00 3.41 R
1953 2013 2.508716 ACTCTCACCCTGATACTACCGA 59.491 50.000 0.00 0.0 0.00 4.69 R
3155 3534 1.405526 GCTCGTGTTTCTATCCAGGCA 60.406 52.381 0.00 0.0 0.00 4.75 R
3608 4014 1.573932 CGCCGTCACTTGCAATCAA 59.426 52.632 0.00 0.0 0.00 2.57 R
4382 5096 0.105964 TCTTGCTTGGCACACGTACT 59.894 50.000 0.00 0.0 38.71 2.73 R
5409 6231 0.037046 GAAACGCCCGGAAACCTAGA 60.037 55.000 0.73 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.232696 TGTCGCAACTAGCTACCAATCA 59.767 45.455 0.00 0.00 42.61 2.57
76 79 4.823442 CCTAGCATGCTACAAATCCATCAA 59.177 41.667 23.52 0.28 0.00 2.57
77 80 5.300034 CCTAGCATGCTACAAATCCATCAAA 59.700 40.000 23.52 0.00 0.00 2.69
79 82 6.040209 AGCATGCTACAAATCCATCAAAAA 57.960 33.333 21.21 0.00 0.00 1.94
80 83 6.646267 AGCATGCTACAAATCCATCAAAAAT 58.354 32.000 21.21 0.00 0.00 1.82
81 84 7.784037 AGCATGCTACAAATCCATCAAAAATA 58.216 30.769 21.21 0.00 0.00 1.40
82 85 7.924412 AGCATGCTACAAATCCATCAAAAATAG 59.076 33.333 21.21 0.00 0.00 1.73
83 86 7.306983 GCATGCTACAAATCCATCAAAAATAGC 60.307 37.037 11.37 0.00 34.46 2.97
84 87 7.408756 TGCTACAAATCCATCAAAAATAGCT 57.591 32.000 0.00 0.00 34.86 3.32
85 88 8.518430 TGCTACAAATCCATCAAAAATAGCTA 57.482 30.769 0.00 0.00 34.86 3.32
86 89 8.405531 TGCTACAAATCCATCAAAAATAGCTAC 58.594 33.333 0.00 0.00 34.86 3.58
87 90 7.862873 GCTACAAATCCATCAAAAATAGCTACC 59.137 37.037 0.00 0.00 31.84 3.18
88 91 6.795399 ACAAATCCATCAAAAATAGCTACCG 58.205 36.000 0.00 0.00 0.00 4.02
89 92 5.438761 AATCCATCAAAAATAGCTACCGC 57.561 39.130 0.00 0.00 0.00 5.68
90 93 3.879998 TCCATCAAAAATAGCTACCGCA 58.120 40.909 0.00 0.00 39.10 5.69
91 94 4.265893 TCCATCAAAAATAGCTACCGCAA 58.734 39.130 0.00 0.00 39.10 4.85
92 95 4.095782 TCCATCAAAAATAGCTACCGCAAC 59.904 41.667 0.00 0.00 39.10 4.17
93 96 4.142491 CCATCAAAAATAGCTACCGCAACA 60.142 41.667 0.00 0.00 39.10 3.33
94 97 5.450412 CCATCAAAAATAGCTACCGCAACAT 60.450 40.000 0.00 0.00 39.10 2.71
95 98 5.229921 TCAAAAATAGCTACCGCAACATC 57.770 39.130 0.00 0.00 39.10 3.06
96 99 4.697828 TCAAAAATAGCTACCGCAACATCA 59.302 37.500 0.00 0.00 39.10 3.07
97 100 4.616181 AAAATAGCTACCGCAACATCAC 57.384 40.909 0.00 0.00 39.10 3.06
98 101 2.979814 ATAGCTACCGCAACATCACA 57.020 45.000 0.00 0.00 39.10 3.58
99 102 2.979814 TAGCTACCGCAACATCACAT 57.020 45.000 0.00 0.00 39.10 3.21
100 103 2.113860 AGCTACCGCAACATCACATT 57.886 45.000 0.00 0.00 39.10 2.71
101 104 2.009774 AGCTACCGCAACATCACATTC 58.990 47.619 0.00 0.00 39.10 2.67
102 105 2.009774 GCTACCGCAACATCACATTCT 58.990 47.619 0.00 0.00 35.78 2.40
103 106 2.030946 GCTACCGCAACATCACATTCTC 59.969 50.000 0.00 0.00 35.78 2.87
104 107 1.453155 ACCGCAACATCACATTCTCC 58.547 50.000 0.00 0.00 0.00 3.71
105 108 0.734889 CCGCAACATCACATTCTCCC 59.265 55.000 0.00 0.00 0.00 4.30
106 109 1.452110 CGCAACATCACATTCTCCCA 58.548 50.000 0.00 0.00 0.00 4.37
107 110 1.399440 CGCAACATCACATTCTCCCAG 59.601 52.381 0.00 0.00 0.00 4.45
108 111 2.715046 GCAACATCACATTCTCCCAGA 58.285 47.619 0.00 0.00 0.00 3.86
109 112 3.285484 GCAACATCACATTCTCCCAGAT 58.715 45.455 0.00 0.00 0.00 2.90
110 113 3.314635 GCAACATCACATTCTCCCAGATC 59.685 47.826 0.00 0.00 0.00 2.75
111 114 3.465742 ACATCACATTCTCCCAGATCG 57.534 47.619 0.00 0.00 0.00 3.69
112 115 2.103771 ACATCACATTCTCCCAGATCGG 59.896 50.000 0.00 0.00 0.00 4.18
113 116 1.866015 TCACATTCTCCCAGATCGGT 58.134 50.000 3.47 0.00 0.00 4.69
114 117 3.026707 TCACATTCTCCCAGATCGGTA 57.973 47.619 3.47 0.00 0.00 4.02
115 118 2.693591 TCACATTCTCCCAGATCGGTAC 59.306 50.000 3.47 0.00 0.00 3.34
116 119 2.695666 CACATTCTCCCAGATCGGTACT 59.304 50.000 0.00 0.00 0.00 2.73
117 120 2.695666 ACATTCTCCCAGATCGGTACTG 59.304 50.000 0.00 0.00 35.43 2.74
118 121 2.526888 TTCTCCCAGATCGGTACTGT 57.473 50.000 0.64 0.00 34.04 3.55
119 122 3.657398 TTCTCCCAGATCGGTACTGTA 57.343 47.619 0.64 0.00 34.04 2.74
120 123 2.928334 TCTCCCAGATCGGTACTGTAC 58.072 52.381 9.46 9.46 34.04 2.90
121 124 2.240414 TCTCCCAGATCGGTACTGTACA 59.760 50.000 18.79 0.00 34.04 2.90
122 125 3.021695 CTCCCAGATCGGTACTGTACAA 58.978 50.000 18.79 7.41 34.04 2.41
123 126 3.637229 CTCCCAGATCGGTACTGTACAAT 59.363 47.826 18.79 11.57 34.04 2.71
124 127 3.383505 TCCCAGATCGGTACTGTACAATG 59.616 47.826 18.79 8.63 34.04 2.82
125 128 3.123804 CCAGATCGGTACTGTACAATGC 58.876 50.000 18.79 6.23 34.04 3.56
126 129 3.181475 CCAGATCGGTACTGTACAATGCT 60.181 47.826 18.79 8.20 34.04 3.79
127 130 3.798878 CAGATCGGTACTGTACAATGCTG 59.201 47.826 18.79 15.03 0.00 4.41
128 131 2.004583 TCGGTACTGTACAATGCTGC 57.995 50.000 18.79 0.00 0.00 5.25
129 132 1.273886 TCGGTACTGTACAATGCTGCA 59.726 47.619 18.79 4.13 0.00 4.41
130 133 2.073056 CGGTACTGTACAATGCTGCAA 58.927 47.619 18.79 0.00 0.00 4.08
131 134 2.094258 CGGTACTGTACAATGCTGCAAG 59.906 50.000 18.79 5.06 0.00 4.01
144 147 2.342910 CTGCAAGCTGGTCACAAATC 57.657 50.000 0.00 0.00 0.00 2.17
145 148 1.610038 CTGCAAGCTGGTCACAAATCA 59.390 47.619 0.00 0.00 0.00 2.57
146 149 2.030371 TGCAAGCTGGTCACAAATCAA 58.970 42.857 0.00 0.00 0.00 2.57
147 150 2.429971 TGCAAGCTGGTCACAAATCAAA 59.570 40.909 0.00 0.00 0.00 2.69
148 151 2.796593 GCAAGCTGGTCACAAATCAAAC 59.203 45.455 0.00 0.00 0.00 2.93
149 152 3.491447 GCAAGCTGGTCACAAATCAAACT 60.491 43.478 0.00 0.00 0.00 2.66
150 153 4.293415 CAAGCTGGTCACAAATCAAACTC 58.707 43.478 0.00 0.00 0.00 3.01
151 154 3.825328 AGCTGGTCACAAATCAAACTCT 58.175 40.909 0.00 0.00 0.00 3.24
152 155 4.973168 AGCTGGTCACAAATCAAACTCTA 58.027 39.130 0.00 0.00 0.00 2.43
153 156 4.757149 AGCTGGTCACAAATCAAACTCTAC 59.243 41.667 0.00 0.00 0.00 2.59
154 157 4.083271 GCTGGTCACAAATCAAACTCTACC 60.083 45.833 0.00 0.00 0.00 3.18
155 158 5.042463 TGGTCACAAATCAAACTCTACCA 57.958 39.130 0.00 0.00 32.30 3.25
156 159 4.819630 TGGTCACAAATCAAACTCTACCAC 59.180 41.667 0.00 0.00 29.85 4.16
157 160 4.819630 GGTCACAAATCAAACTCTACCACA 59.180 41.667 0.00 0.00 0.00 4.17
158 161 5.473504 GGTCACAAATCAAACTCTACCACAT 59.526 40.000 0.00 0.00 0.00 3.21
159 162 6.373779 GTCACAAATCAAACTCTACCACATG 58.626 40.000 0.00 0.00 0.00 3.21
160 163 5.048782 TCACAAATCAAACTCTACCACATGC 60.049 40.000 0.00 0.00 0.00 4.06
161 164 5.048504 CACAAATCAAACTCTACCACATGCT 60.049 40.000 0.00 0.00 0.00 3.79
162 165 5.182001 ACAAATCAAACTCTACCACATGCTC 59.818 40.000 0.00 0.00 0.00 4.26
163 166 4.833478 ATCAAACTCTACCACATGCTCT 57.167 40.909 0.00 0.00 0.00 4.09
164 167 4.193826 TCAAACTCTACCACATGCTCTC 57.806 45.455 0.00 0.00 0.00 3.20
165 168 3.578282 TCAAACTCTACCACATGCTCTCA 59.422 43.478 0.00 0.00 0.00 3.27
188 191 5.470098 CACATCAAACCCTACCATATGCTAC 59.530 44.000 0.00 0.00 0.00 3.58
197 200 5.958380 CCCTACCATATGCTACCAGATCTAA 59.042 44.000 0.00 0.00 0.00 2.10
204 207 8.976353 CCATATGCTACCAGATCTAACTAGAAT 58.024 37.037 0.00 0.00 35.69 2.40
209 212 7.229707 TGCTACCAGATCTAACTAGAATGAGTC 59.770 40.741 0.00 0.00 35.69 3.36
212 215 7.072562 ACCAGATCTAACTAGAATGAGTCCAT 58.927 38.462 0.00 0.00 35.69 3.41
213 216 7.015098 ACCAGATCTAACTAGAATGAGTCCATG 59.985 40.741 0.00 0.00 35.69 3.66
220 223 1.849039 AGAATGAGTCCATGGAAGGGG 59.151 52.381 18.20 0.00 39.14 4.79
222 225 0.253820 ATGAGTCCATGGAAGGGGGT 60.254 55.000 18.20 0.00 39.14 4.95
232 236 3.732048 TGGAAGGGGGTTATTGAACTC 57.268 47.619 0.00 0.00 35.04 3.01
266 270 1.287191 GCAGCTCGAGTGAGACACA 59.713 57.895 15.13 0.00 45.57 3.72
267 271 0.732196 GCAGCTCGAGTGAGACACAG 60.732 60.000 15.13 0.00 45.57 3.66
286 290 3.574396 ACAGAACATGTCGAAGAAGAGGA 59.426 43.478 0.00 0.00 37.75 3.71
292 296 2.808919 TGTCGAAGAAGAGGAGGACAT 58.191 47.619 0.00 0.00 39.69 3.06
293 297 2.493675 TGTCGAAGAAGAGGAGGACATG 59.506 50.000 0.00 0.00 39.69 3.21
305 309 4.796231 GACATGAGTCGCCGCCGT 62.796 66.667 0.00 0.00 34.60 5.68
325 329 4.435970 TAGACCGCCGGCCAGAGA 62.436 66.667 23.46 0.00 0.00 3.10
377 381 0.472471 TTCACGTTGGAGGGAAAGCT 59.528 50.000 0.00 0.00 0.00 3.74
382 386 1.876416 CGTTGGAGGGAAAGCTCGAAA 60.876 52.381 0.00 0.00 0.00 3.46
408 412 1.943340 GAGAATGATGGCGGGAGTTTC 59.057 52.381 0.00 0.00 0.00 2.78
436 440 3.090037 GAGGCGAAGGGTGCTATATAGA 58.910 50.000 14.16 0.00 0.00 1.98
461 466 1.227468 GAATCGGCGGAGGTAACCC 60.227 63.158 7.21 0.00 37.17 4.11
479 484 0.179045 CCGAAATCCTCCTGCCGATT 60.179 55.000 0.00 0.00 0.00 3.34
513 518 2.895680 GAGCTCACGCCATCTCCA 59.104 61.111 9.40 0.00 36.60 3.86
531 536 0.385751 CATGGTCGTATGAGCTCCGT 59.614 55.000 12.15 2.31 43.09 4.69
547 552 2.939261 CGTGCCGTGTTACCCTCCT 61.939 63.158 0.00 0.00 0.00 3.69
579 584 0.033405 AGCCAGTTCCTAGCGGTCTA 60.033 55.000 0.00 0.00 0.00 2.59
612 617 8.663025 AGATGCTTTAAATATCATACGATGCAG 58.337 33.333 12.45 0.00 32.73 4.41
631 636 3.689649 GCAGGTCAAATAGTGAATTCGGT 59.310 43.478 0.04 0.00 38.23 4.69
635 640 6.594159 CAGGTCAAATAGTGAATTCGGTAACT 59.406 38.462 0.04 1.28 38.23 2.24
644 649 7.373778 AGTGAATTCGGTAACTAAACAATCC 57.626 36.000 0.04 0.00 0.00 3.01
727 732 1.344953 TGAGCCCCGTATGGAATGCT 61.345 55.000 1.27 7.42 37.19 3.79
773 779 2.439156 GCTGGGCTGGATGTCACC 60.439 66.667 0.00 0.00 0.00 4.02
922 973 1.952621 ATCTTTCCCTTCCACTCCGA 58.047 50.000 0.00 0.00 0.00 4.55
927 978 0.898789 TCCCTTCCACTCCGAGACAC 60.899 60.000 1.33 0.00 0.00 3.67
928 979 1.592223 CCTTCCACTCCGAGACACC 59.408 63.158 1.33 0.00 0.00 4.16
961 1013 2.246739 ACATCGCATTCATCGCCCG 61.247 57.895 0.00 0.00 0.00 6.13
996 1048 1.977544 AGGCCTCGACAGCTACGTT 60.978 57.895 0.00 0.00 0.00 3.99
1001 1053 0.456312 CTCGACAGCTACGTTGGTCC 60.456 60.000 11.23 0.00 0.00 4.46
1072 1128 5.123227 CCAGTTGAGTTTTCCTTGTAGTCA 58.877 41.667 0.00 0.00 0.00 3.41
1282 1339 2.751259 CCATCAGTCCAACCATGACTTG 59.249 50.000 0.00 0.00 41.02 3.16
1283 1340 3.415212 CATCAGTCCAACCATGACTTGT 58.585 45.455 0.00 0.00 41.02 3.16
1360 1417 4.523083 TGGACCTAGCAATGGTGTATTTC 58.477 43.478 0.00 0.00 38.03 2.17
1376 1433 7.392113 TGGTGTATTTCGATTTTGGATTACAGT 59.608 33.333 0.00 0.00 0.00 3.55
1499 1557 3.274288 TGGGGAACACAAAAATTTGCAC 58.726 40.909 5.82 0.00 41.79 4.57
1505 1563 6.377780 GGAACACAAAAATTTGCACTGTTTT 58.622 32.000 11.99 0.00 41.79 2.43
1516 1574 4.998671 TGCACTGTTTTCAATTCTCCAA 57.001 36.364 0.00 0.00 0.00 3.53
1543 1601 5.674525 AGAGAGTTTTGATGTGTGAACTGA 58.325 37.500 0.00 0.00 32.85 3.41
1773 1832 2.352457 CCTACTGTAGCTCGCGCG 60.352 66.667 26.76 26.76 42.32 6.86
1792 1851 1.735920 CTATCGCCATGAGCTCGGC 60.736 63.158 19.55 19.55 45.28 5.54
1914 1973 7.076983 GCATAACTCGTGTAGTCCTATTAGAC 58.923 42.308 0.00 0.00 37.50 2.59
1952 2012 5.888105 AGTACACATGTTGGAGTCGTATAC 58.112 41.667 0.00 0.00 0.00 1.47
1953 2013 5.651139 AGTACACATGTTGGAGTCGTATACT 59.349 40.000 0.00 0.00 42.80 2.12
1965 2025 6.630676 GAGTCGTATACTCGGTAGTATCAG 57.369 45.833 0.56 0.00 44.05 2.90
1966 2026 5.477510 AGTCGTATACTCGGTAGTATCAGG 58.522 45.833 0.56 0.00 44.05 3.86
1967 2027 4.629200 GTCGTATACTCGGTAGTATCAGGG 59.371 50.000 0.56 0.00 44.05 4.45
1968 2028 4.284490 TCGTATACTCGGTAGTATCAGGGT 59.716 45.833 0.56 0.00 44.05 4.34
1969 2029 4.391216 CGTATACTCGGTAGTATCAGGGTG 59.609 50.000 0.56 0.00 44.05 4.61
2082 2195 4.511082 CGTCCAAATTTTTGCAAATCAGGT 59.489 37.500 13.65 0.00 36.86 4.00
2297 2626 8.901748 CAACGAACTGGACAAATAAATAAAGTG 58.098 33.333 0.00 0.00 0.00 3.16
2301 2630 9.406828 GAACTGGACAAATAAATAAAGTGAACC 57.593 33.333 0.00 0.00 0.00 3.62
3154 3533 8.997621 TCGGCTATTGTATAAATAATGTCCTC 57.002 34.615 0.00 0.00 0.00 3.71
3155 3534 8.812972 TCGGCTATTGTATAAATAATGTCCTCT 58.187 33.333 0.00 0.00 0.00 3.69
3178 3557 2.544685 CTGGATAGAAACACGAGCAGG 58.455 52.381 0.00 0.00 0.00 4.85
3341 3732 5.617252 TCTCTCACGGTTAACATTTTTCCT 58.383 37.500 8.10 0.00 0.00 3.36
3458 3855 8.557029 TGTCAGATACACTGTCAATACGTATAG 58.443 37.037 8.83 5.02 45.86 1.31
3501 3898 7.539712 TTTGCAAAAATTTGGACGAATGTTA 57.460 28.000 10.02 0.00 38.25 2.41
3608 4014 6.440647 TGGTGTGAGTAATGGAGTATCTTTCT 59.559 38.462 0.00 0.00 33.73 2.52
3867 4300 1.101049 GCCTCTCACTCCTCTCCTCG 61.101 65.000 0.00 0.00 0.00 4.63
3975 4408 4.493747 CCCGCCGACGTCTTCCTC 62.494 72.222 14.70 0.00 37.70 3.71
3993 4426 2.432628 CGCCTGTGGAACTCCGAC 60.433 66.667 0.00 0.00 39.43 4.79
4335 4804 7.385778 ACGTATGTTGTATATGTTTGCCTTT 57.614 32.000 0.00 0.00 0.00 3.11
4347 4816 4.038080 GCCTTTTGTGGCGTCCGG 62.038 66.667 0.00 0.00 43.74 5.14
4379 5093 0.804933 GCGCGTGGGGAAGTAGTTAG 60.805 60.000 8.43 0.00 0.00 2.34
4380 5094 0.804933 CGCGTGGGGAAGTAGTTAGC 60.805 60.000 0.00 0.00 0.00 3.09
4381 5095 0.535797 GCGTGGGGAAGTAGTTAGCT 59.464 55.000 0.00 0.00 0.00 3.32
4382 5096 1.753073 GCGTGGGGAAGTAGTTAGCTA 59.247 52.381 0.00 0.00 0.00 3.32
4383 5097 2.223758 GCGTGGGGAAGTAGTTAGCTAG 60.224 54.545 0.00 0.00 0.00 3.42
4422 5136 2.627945 TGCGCGAGAGATTTTTGGTAT 58.372 42.857 12.10 0.00 0.00 2.73
4423 5137 3.787785 TGCGCGAGAGATTTTTGGTATA 58.212 40.909 12.10 0.00 0.00 1.47
4424 5138 3.802139 TGCGCGAGAGATTTTTGGTATAG 59.198 43.478 12.10 0.00 0.00 1.31
4425 5139 3.363084 GCGCGAGAGATTTTTGGTATAGC 60.363 47.826 12.10 0.00 0.00 2.97
4504 5218 2.332063 ATTACGGCTTGTGATGGGAG 57.668 50.000 0.00 0.00 0.00 4.30
4533 5247 4.226113 GGAGACGCTCTAATACATCGTT 57.774 45.455 6.78 0.00 33.21 3.85
4563 5277 1.808411 TCCAAATGCACCTCGTCTTC 58.192 50.000 0.00 0.00 0.00 2.87
4564 5278 0.443869 CCAAATGCACCTCGTCTTCG 59.556 55.000 0.00 0.00 38.55 3.79
4565 5279 1.428448 CAAATGCACCTCGTCTTCGA 58.572 50.000 0.00 0.00 44.12 3.71
4566 5280 2.002586 CAAATGCACCTCGTCTTCGAT 58.997 47.619 0.00 0.00 45.21 3.59
4567 5281 3.186909 CAAATGCACCTCGTCTTCGATA 58.813 45.455 0.00 0.00 45.21 2.92
4568 5282 3.520290 AATGCACCTCGTCTTCGATAA 57.480 42.857 0.00 0.00 45.21 1.75
4569 5283 3.520290 ATGCACCTCGTCTTCGATAAA 57.480 42.857 0.00 0.00 45.21 1.40
4570 5284 2.602878 TGCACCTCGTCTTCGATAAAC 58.397 47.619 0.00 0.00 45.21 2.01
4571 5285 1.925185 GCACCTCGTCTTCGATAAACC 59.075 52.381 0.00 0.00 45.21 3.27
4572 5286 2.416972 GCACCTCGTCTTCGATAAACCT 60.417 50.000 0.00 0.00 45.21 3.50
4573 5287 3.846360 CACCTCGTCTTCGATAAACCTT 58.154 45.455 0.00 0.00 45.21 3.50
4574 5288 4.676196 GCACCTCGTCTTCGATAAACCTTA 60.676 45.833 0.00 0.00 45.21 2.69
4575 5289 5.035443 CACCTCGTCTTCGATAAACCTTAG 58.965 45.833 0.00 0.00 45.21 2.18
4576 5290 4.946157 ACCTCGTCTTCGATAAACCTTAGA 59.054 41.667 0.00 0.00 45.21 2.10
4577 5291 5.066246 ACCTCGTCTTCGATAAACCTTAGAG 59.934 44.000 0.00 0.00 45.21 2.43
4578 5292 4.918037 TCGTCTTCGATAAACCTTAGAGC 58.082 43.478 0.00 0.00 41.35 4.09
4579 5293 4.397103 TCGTCTTCGATAAACCTTAGAGCA 59.603 41.667 0.00 0.00 41.35 4.26
4580 5294 5.067413 TCGTCTTCGATAAACCTTAGAGCAT 59.933 40.000 0.00 0.00 41.35 3.79
4581 5295 5.399892 CGTCTTCGATAAACCTTAGAGCATC 59.600 44.000 0.00 0.00 39.71 3.91
4582 5296 6.733506 CGTCTTCGATAAACCTTAGAGCATCT 60.734 42.308 0.00 0.00 44.46 2.90
4583 5297 7.520131 CGTCTTCGATAAACCTTAGAGCATCTA 60.520 40.741 0.00 0.00 42.79 1.98
4595 5309 2.803451 GAGCATCTACAGTCGGACTTG 58.197 52.381 8.18 5.17 0.00 3.16
4596 5310 1.478510 AGCATCTACAGTCGGACTTGG 59.521 52.381 8.18 0.59 0.00 3.61
4597 5311 1.927895 CATCTACAGTCGGACTTGGC 58.072 55.000 8.18 0.00 0.00 4.52
4598 5312 1.204704 CATCTACAGTCGGACTTGGCA 59.795 52.381 8.18 0.00 0.00 4.92
4599 5313 1.334160 TCTACAGTCGGACTTGGCAA 58.666 50.000 8.18 0.00 0.00 4.52
4600 5314 1.689813 TCTACAGTCGGACTTGGCAAA 59.310 47.619 8.18 0.00 0.00 3.68
4601 5315 2.301870 TCTACAGTCGGACTTGGCAAAT 59.698 45.455 8.18 0.00 0.00 2.32
4602 5316 1.981256 ACAGTCGGACTTGGCAAATT 58.019 45.000 8.18 0.00 0.00 1.82
4603 5317 1.880027 ACAGTCGGACTTGGCAAATTC 59.120 47.619 8.18 0.39 0.00 2.17
4604 5318 1.135972 CAGTCGGACTTGGCAAATTCG 60.136 52.381 8.18 2.35 0.00 3.34
4605 5319 0.168128 GTCGGACTTGGCAAATTCGG 59.832 55.000 9.73 9.19 0.00 4.30
4606 5320 1.154035 CGGACTTGGCAAATTCGGC 60.154 57.895 0.51 0.00 0.00 5.54
4612 5326 2.362375 GGCAAATTCGGCCCCTCA 60.362 61.111 9.40 0.00 45.87 3.86
4613 5327 1.981853 GGCAAATTCGGCCCCTCAA 60.982 57.895 9.40 0.00 45.87 3.02
4614 5328 1.540435 GGCAAATTCGGCCCCTCAAA 61.540 55.000 9.40 0.00 45.87 2.69
4615 5329 0.536724 GCAAATTCGGCCCCTCAAAT 59.463 50.000 0.00 0.00 0.00 2.32
4616 5330 1.740043 GCAAATTCGGCCCCTCAAATG 60.740 52.381 0.00 0.00 0.00 2.32
4617 5331 0.536724 AAATTCGGCCCCTCAAATGC 59.463 50.000 0.00 0.00 0.00 3.56
4618 5332 1.666209 AATTCGGCCCCTCAAATGCG 61.666 55.000 0.00 0.00 0.00 4.73
4621 5335 4.133796 GGCCCCTCAAATGCGCAC 62.134 66.667 14.90 0.00 0.00 5.34
4622 5336 4.481112 GCCCCTCAAATGCGCACG 62.481 66.667 14.90 4.22 0.00 5.34
4623 5337 3.814268 CCCCTCAAATGCGCACGG 61.814 66.667 14.90 8.43 0.00 4.94
4624 5338 2.745884 CCCTCAAATGCGCACGGA 60.746 61.111 14.90 10.00 0.00 4.69
4625 5339 2.114670 CCCTCAAATGCGCACGGAT 61.115 57.895 14.90 0.00 0.00 4.18
4626 5340 1.063006 CCTCAAATGCGCACGGATG 59.937 57.895 14.90 9.87 0.00 3.51
4627 5341 1.647545 CCTCAAATGCGCACGGATGT 61.648 55.000 14.90 0.00 0.00 3.06
4639 5353 2.436646 GGATGTGTCCGTGGGCAG 60.437 66.667 0.00 0.00 34.13 4.85
4640 5354 2.347490 GATGTGTCCGTGGGCAGT 59.653 61.111 0.00 0.00 0.00 4.40
4641 5355 2.032528 ATGTGTCCGTGGGCAGTG 59.967 61.111 0.00 0.00 0.00 3.66
4642 5356 2.449031 GATGTGTCCGTGGGCAGTGA 62.449 60.000 0.00 0.00 0.00 3.41
4643 5357 1.841302 ATGTGTCCGTGGGCAGTGAT 61.841 55.000 0.00 0.00 0.00 3.06
4644 5358 1.741770 GTGTCCGTGGGCAGTGATC 60.742 63.158 0.00 0.00 0.00 2.92
4645 5359 2.509336 GTCCGTGGGCAGTGATCG 60.509 66.667 0.00 0.00 0.00 3.69
4646 5360 3.770040 TCCGTGGGCAGTGATCGG 61.770 66.667 0.00 1.82 42.12 4.18
4647 5361 3.770040 CCGTGGGCAGTGATCGGA 61.770 66.667 0.00 0.00 43.22 4.55
4648 5362 2.509336 CGTGGGCAGTGATCGGAC 60.509 66.667 0.00 0.00 0.00 4.79
4649 5363 2.662596 GTGGGCAGTGATCGGACA 59.337 61.111 0.00 0.00 0.00 4.02
4650 5364 1.221840 GTGGGCAGTGATCGGACAT 59.778 57.895 0.00 0.00 0.00 3.06
4651 5365 1.091771 GTGGGCAGTGATCGGACATG 61.092 60.000 0.00 0.00 0.00 3.21
4652 5366 2.182842 GGGCAGTGATCGGACATGC 61.183 63.158 0.00 0.00 36.16 4.06
4653 5367 3.414272 GCAGTGATCGGACATGCC 58.586 61.111 0.00 0.00 0.00 4.40
4654 5368 1.153289 GCAGTGATCGGACATGCCT 60.153 57.895 0.00 0.00 0.00 4.75
4655 5369 1.156645 GCAGTGATCGGACATGCCTC 61.157 60.000 0.00 0.00 0.00 4.70
4656 5370 0.176449 CAGTGATCGGACATGCCTCA 59.824 55.000 0.00 0.00 0.00 3.86
4657 5371 0.904649 AGTGATCGGACATGCCTCAA 59.095 50.000 0.00 0.00 0.00 3.02
4658 5372 1.278985 AGTGATCGGACATGCCTCAAA 59.721 47.619 0.00 0.00 0.00 2.69
4659 5373 2.092753 AGTGATCGGACATGCCTCAAAT 60.093 45.455 0.00 0.00 0.00 2.32
4660 5374 2.684881 GTGATCGGACATGCCTCAAATT 59.315 45.455 0.00 0.00 0.00 1.82
4661 5375 3.129287 GTGATCGGACATGCCTCAAATTT 59.871 43.478 0.00 0.00 0.00 1.82
4662 5376 3.378112 TGATCGGACATGCCTCAAATTTC 59.622 43.478 0.00 0.00 0.00 2.17
4663 5377 2.789213 TCGGACATGCCTCAAATTTCA 58.211 42.857 0.00 0.00 0.00 2.69
4664 5378 3.153130 TCGGACATGCCTCAAATTTCAA 58.847 40.909 0.00 0.00 0.00 2.69
4665 5379 3.191162 TCGGACATGCCTCAAATTTCAAG 59.809 43.478 0.00 0.00 0.00 3.02
4666 5380 3.191162 CGGACATGCCTCAAATTTCAAGA 59.809 43.478 0.00 0.00 0.00 3.02
4667 5381 4.321156 CGGACATGCCTCAAATTTCAAGAA 60.321 41.667 0.00 0.00 0.00 2.52
4668 5382 5.622914 CGGACATGCCTCAAATTTCAAGAAT 60.623 40.000 0.00 0.00 0.00 2.40
4669 5383 6.168389 GGACATGCCTCAAATTTCAAGAATT 58.832 36.000 0.00 0.00 0.00 2.17
4692 5406 1.062685 CCACTCGTCGTCGGAGATG 59.937 63.158 1.55 0.00 46.63 2.90
4693 5407 1.645704 CCACTCGTCGTCGGAGATGT 61.646 60.000 1.55 0.00 45.22 3.06
4695 5409 0.672711 ACTCGTCGTCGGAGATGTCA 60.673 55.000 1.55 0.00 45.22 3.58
4711 5425 0.107703 GTCAACGATCTCCATGCCCA 60.108 55.000 0.00 0.00 0.00 5.36
4819 5537 3.764466 CGGACTCCGCTTGCTCCT 61.764 66.667 4.10 0.00 41.17 3.69
4859 5580 3.426903 CCTCCACATAGGCCCATTG 57.573 57.895 0.00 0.00 37.29 2.82
4957 5678 0.964358 ATGTTGAAGCCCAGCAGCTC 60.964 55.000 0.00 0.00 44.11 4.09
4959 5680 3.907260 TTGAAGCCCAGCAGCTCCG 62.907 63.158 0.00 0.00 44.11 4.63
4964 5700 3.385384 CCCAGCAGCTCCGACTCA 61.385 66.667 0.00 0.00 0.00 3.41
4965 5701 2.729479 CCCAGCAGCTCCGACTCAT 61.729 63.158 0.00 0.00 0.00 2.90
4990 5726 3.775654 CGCCTCCTCCACCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
5023 5759 0.793617 TCCTTCTCCTCTTCCCCTGT 59.206 55.000 0.00 0.00 0.00 4.00
5080 5822 4.529219 CAGCCCGGTAGCGATGCA 62.529 66.667 23.83 0.00 38.01 3.96
5086 5830 4.530857 GGTAGCGATGCAGGCGGT 62.531 66.667 18.26 18.26 42.56 5.68
5091 5837 3.792047 CGATGCAGGCGGTGTGTG 61.792 66.667 4.01 0.00 0.00 3.82
5101 5848 2.899838 GGTGTGTGCGGCTTGTCA 60.900 61.111 0.00 0.00 0.00 3.58
5104 5851 1.525765 TGTGTGCGGCTTGTCATGT 60.526 52.632 0.00 0.00 0.00 3.21
5114 5861 2.359900 GCTTGTCATGTCCGGATCTTT 58.640 47.619 7.81 0.00 0.00 2.52
5172 5919 3.323403 GGCATAGTAGGTGATCTTGCTCT 59.677 47.826 0.00 0.00 0.00 4.09
5223 5972 2.103538 CGTCGGACCGTGGGTATG 59.896 66.667 14.79 0.00 35.25 2.39
5250 5999 3.070987 GCGGGAGAGGGAGGAGGTA 62.071 68.421 0.00 0.00 0.00 3.08
5345 6148 0.613012 GCTGGATTTGGTCTTGGGCT 60.613 55.000 0.00 0.00 0.00 5.19
5494 6335 5.104941 CGTCCCATATTTAGGCTGGATATGA 60.105 44.000 22.87 9.65 36.37 2.15
5503 6344 0.183492 GCTGGATATGAGGGTGCCAA 59.817 55.000 0.00 0.00 0.00 4.52
5566 6410 2.131972 CGACAAATCGTGACAGGTCAA 58.868 47.619 3.28 0.00 43.66 3.18
5567 6411 2.096909 CGACAAATCGTGACAGGTCAAC 60.097 50.000 3.28 0.00 43.66 3.18
5575 6422 3.934391 GACAGGTCAACCGAGCGGG 62.934 68.421 14.07 0.00 44.60 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.074547 TTGGTAGCTAGTTGCGACAC 57.925 50.000 6.90 0.00 46.85 3.67
8 9 2.232696 TGATTGGTAGCTAGTTGCGACA 59.767 45.455 6.90 0.34 46.85 4.35
12 13 3.941483 ACACATGATTGGTAGCTAGTTGC 59.059 43.478 0.00 0.00 43.29 4.17
46 49 3.536956 TGTAGCATGCTAGGGTTGTAC 57.463 47.619 27.54 16.03 0.00 2.90
76 79 4.006989 TGTGATGTTGCGGTAGCTATTTT 58.993 39.130 0.00 0.00 45.42 1.82
77 80 3.605634 TGTGATGTTGCGGTAGCTATTT 58.394 40.909 0.00 0.00 45.42 1.40
79 82 2.979814 TGTGATGTTGCGGTAGCTAT 57.020 45.000 0.00 0.00 45.42 2.97
80 83 2.979814 ATGTGATGTTGCGGTAGCTA 57.020 45.000 0.00 0.00 45.42 3.32
81 84 2.009774 GAATGTGATGTTGCGGTAGCT 58.990 47.619 0.00 0.00 45.42 3.32
82 85 2.009774 AGAATGTGATGTTGCGGTAGC 58.990 47.619 0.00 0.00 45.41 3.58
83 86 2.609459 GGAGAATGTGATGTTGCGGTAG 59.391 50.000 0.00 0.00 0.00 3.18
84 87 2.627945 GGAGAATGTGATGTTGCGGTA 58.372 47.619 0.00 0.00 0.00 4.02
85 88 1.453155 GGAGAATGTGATGTTGCGGT 58.547 50.000 0.00 0.00 0.00 5.68
86 89 0.734889 GGGAGAATGTGATGTTGCGG 59.265 55.000 0.00 0.00 0.00 5.69
87 90 1.399440 CTGGGAGAATGTGATGTTGCG 59.601 52.381 0.00 0.00 0.00 4.85
88 91 2.715046 TCTGGGAGAATGTGATGTTGC 58.285 47.619 0.00 0.00 0.00 4.17
89 92 3.558829 CGATCTGGGAGAATGTGATGTTG 59.441 47.826 0.00 0.00 0.00 3.33
90 93 3.432749 CCGATCTGGGAGAATGTGATGTT 60.433 47.826 0.00 0.00 0.00 2.71
91 94 2.103771 CCGATCTGGGAGAATGTGATGT 59.896 50.000 0.00 0.00 0.00 3.06
92 95 2.103771 ACCGATCTGGGAGAATGTGATG 59.896 50.000 8.20 0.00 44.64 3.07
93 96 2.402564 ACCGATCTGGGAGAATGTGAT 58.597 47.619 8.20 0.00 44.64 3.06
94 97 1.866015 ACCGATCTGGGAGAATGTGA 58.134 50.000 8.20 0.00 44.64 3.58
95 98 2.695666 AGTACCGATCTGGGAGAATGTG 59.304 50.000 8.20 0.00 44.64 3.21
96 99 2.695666 CAGTACCGATCTGGGAGAATGT 59.304 50.000 8.20 0.00 44.64 2.71
97 100 2.695666 ACAGTACCGATCTGGGAGAATG 59.304 50.000 8.20 5.43 44.64 2.67
98 101 3.033659 ACAGTACCGATCTGGGAGAAT 57.966 47.619 8.20 0.00 44.64 2.40
99 102 2.526888 ACAGTACCGATCTGGGAGAA 57.473 50.000 8.20 0.00 44.64 2.87
100 103 2.240414 TGTACAGTACCGATCTGGGAGA 59.760 50.000 8.30 0.00 44.64 3.71
101 104 2.651455 TGTACAGTACCGATCTGGGAG 58.349 52.381 8.30 0.00 44.64 4.30
102 105 2.812836 TGTACAGTACCGATCTGGGA 57.187 50.000 8.30 0.00 44.64 4.37
103 106 3.717707 CATTGTACAGTACCGATCTGGG 58.282 50.000 8.30 0.00 44.64 4.45
104 107 3.123804 GCATTGTACAGTACCGATCTGG 58.876 50.000 8.30 2.55 46.41 3.86
105 108 3.798878 CAGCATTGTACAGTACCGATCTG 59.201 47.826 8.30 6.93 38.68 2.90
106 109 3.738281 GCAGCATTGTACAGTACCGATCT 60.738 47.826 8.30 0.00 0.00 2.75
107 110 2.540101 GCAGCATTGTACAGTACCGATC 59.460 50.000 8.30 0.00 0.00 3.69
108 111 2.093711 TGCAGCATTGTACAGTACCGAT 60.094 45.455 8.30 0.01 0.00 4.18
109 112 1.273886 TGCAGCATTGTACAGTACCGA 59.726 47.619 8.30 0.00 0.00 4.69
110 113 1.720805 TGCAGCATTGTACAGTACCG 58.279 50.000 8.30 0.00 0.00 4.02
111 114 2.159517 GCTTGCAGCATTGTACAGTACC 60.160 50.000 8.30 0.00 41.89 3.34
112 115 2.744202 AGCTTGCAGCATTGTACAGTAC 59.256 45.455 3.49 3.49 45.56 2.73
113 116 2.743664 CAGCTTGCAGCATTGTACAGTA 59.256 45.455 0.00 0.00 45.56 2.74
114 117 1.538512 CAGCTTGCAGCATTGTACAGT 59.461 47.619 0.00 0.00 45.56 3.55
115 118 1.135489 CCAGCTTGCAGCATTGTACAG 60.135 52.381 0.00 0.00 45.56 2.74
116 119 0.883153 CCAGCTTGCAGCATTGTACA 59.117 50.000 0.00 0.00 45.56 2.90
117 120 0.883833 ACCAGCTTGCAGCATTGTAC 59.116 50.000 0.00 0.00 45.56 2.90
118 121 1.167851 GACCAGCTTGCAGCATTGTA 58.832 50.000 0.00 0.00 45.56 2.41
119 122 0.824595 TGACCAGCTTGCAGCATTGT 60.825 50.000 0.00 4.56 45.56 2.71
120 123 0.388134 GTGACCAGCTTGCAGCATTG 60.388 55.000 0.00 0.00 45.56 2.82
121 124 0.824595 TGTGACCAGCTTGCAGCATT 60.825 50.000 0.00 0.00 45.56 3.56
122 125 0.824595 TTGTGACCAGCTTGCAGCAT 60.825 50.000 0.00 0.00 45.56 3.79
123 126 1.036481 TTTGTGACCAGCTTGCAGCA 61.036 50.000 10.16 0.00 45.56 4.41
124 127 0.316204 ATTTGTGACCAGCTTGCAGC 59.684 50.000 0.47 0.47 42.84 5.25
125 128 1.610038 TGATTTGTGACCAGCTTGCAG 59.390 47.619 0.00 0.00 0.00 4.41
126 129 1.689984 TGATTTGTGACCAGCTTGCA 58.310 45.000 0.00 0.00 0.00 4.08
127 130 2.796593 GTTTGATTTGTGACCAGCTTGC 59.203 45.455 0.00 0.00 0.00 4.01
128 131 4.037208 AGAGTTTGATTTGTGACCAGCTTG 59.963 41.667 0.00 0.00 0.00 4.01
129 132 4.210331 AGAGTTTGATTTGTGACCAGCTT 58.790 39.130 0.00 0.00 0.00 3.74
130 133 3.825328 AGAGTTTGATTTGTGACCAGCT 58.175 40.909 0.00 0.00 0.00 4.24
131 134 4.083271 GGTAGAGTTTGATTTGTGACCAGC 60.083 45.833 0.00 0.00 0.00 4.85
132 135 5.049405 GTGGTAGAGTTTGATTTGTGACCAG 60.049 44.000 0.00 0.00 35.22 4.00
133 136 4.819630 GTGGTAGAGTTTGATTTGTGACCA 59.180 41.667 0.00 0.00 32.16 4.02
134 137 4.819630 TGTGGTAGAGTTTGATTTGTGACC 59.180 41.667 0.00 0.00 0.00 4.02
135 138 6.373779 CATGTGGTAGAGTTTGATTTGTGAC 58.626 40.000 0.00 0.00 0.00 3.67
136 139 5.048782 GCATGTGGTAGAGTTTGATTTGTGA 60.049 40.000 0.00 0.00 0.00 3.58
137 140 5.048504 AGCATGTGGTAGAGTTTGATTTGTG 60.049 40.000 0.00 0.00 0.00 3.33
138 141 5.072741 AGCATGTGGTAGAGTTTGATTTGT 58.927 37.500 0.00 0.00 0.00 2.83
139 142 5.413833 AGAGCATGTGGTAGAGTTTGATTTG 59.586 40.000 0.00 0.00 0.00 2.32
140 143 5.564550 AGAGCATGTGGTAGAGTTTGATTT 58.435 37.500 0.00 0.00 0.00 2.17
141 144 5.171339 AGAGCATGTGGTAGAGTTTGATT 57.829 39.130 0.00 0.00 0.00 2.57
142 145 4.223700 TGAGAGCATGTGGTAGAGTTTGAT 59.776 41.667 0.00 0.00 0.00 2.57
143 146 3.578282 TGAGAGCATGTGGTAGAGTTTGA 59.422 43.478 0.00 0.00 0.00 2.69
144 147 3.681897 GTGAGAGCATGTGGTAGAGTTTG 59.318 47.826 0.00 0.00 0.00 2.93
145 148 3.324846 TGTGAGAGCATGTGGTAGAGTTT 59.675 43.478 0.00 0.00 0.00 2.66
146 149 2.899900 TGTGAGAGCATGTGGTAGAGTT 59.100 45.455 0.00 0.00 0.00 3.01
147 150 2.529632 TGTGAGAGCATGTGGTAGAGT 58.470 47.619 0.00 0.00 0.00 3.24
148 151 3.131755 TGATGTGAGAGCATGTGGTAGAG 59.868 47.826 0.00 0.00 0.00 2.43
149 152 3.099141 TGATGTGAGAGCATGTGGTAGA 58.901 45.455 0.00 0.00 0.00 2.59
150 153 3.531934 TGATGTGAGAGCATGTGGTAG 57.468 47.619 0.00 0.00 0.00 3.18
151 154 3.979101 TTGATGTGAGAGCATGTGGTA 57.021 42.857 0.00 0.00 0.00 3.25
152 155 2.816087 GTTTGATGTGAGAGCATGTGGT 59.184 45.455 0.00 0.00 0.00 4.16
153 156 2.163010 GGTTTGATGTGAGAGCATGTGG 59.837 50.000 0.00 0.00 0.00 4.17
154 157 2.163010 GGGTTTGATGTGAGAGCATGTG 59.837 50.000 0.00 0.00 0.00 3.21
155 158 2.040813 AGGGTTTGATGTGAGAGCATGT 59.959 45.455 0.00 0.00 0.00 3.21
156 159 2.719739 AGGGTTTGATGTGAGAGCATG 58.280 47.619 0.00 0.00 0.00 4.06
157 160 3.370953 GGTAGGGTTTGATGTGAGAGCAT 60.371 47.826 0.00 0.00 0.00 3.79
158 161 2.027192 GGTAGGGTTTGATGTGAGAGCA 60.027 50.000 0.00 0.00 0.00 4.26
159 162 2.027192 TGGTAGGGTTTGATGTGAGAGC 60.027 50.000 0.00 0.00 0.00 4.09
160 163 3.981071 TGGTAGGGTTTGATGTGAGAG 57.019 47.619 0.00 0.00 0.00 3.20
161 164 5.687441 GCATATGGTAGGGTTTGATGTGAGA 60.687 44.000 4.56 0.00 0.00 3.27
162 165 4.516698 GCATATGGTAGGGTTTGATGTGAG 59.483 45.833 4.56 0.00 0.00 3.51
163 166 4.165950 AGCATATGGTAGGGTTTGATGTGA 59.834 41.667 5.40 0.00 0.00 3.58
164 167 4.464008 AGCATATGGTAGGGTTTGATGTG 58.536 43.478 5.40 0.00 0.00 3.21
165 168 4.796110 AGCATATGGTAGGGTTTGATGT 57.204 40.909 5.40 0.00 0.00 3.06
188 191 6.968263 TGGACTCATTCTAGTTAGATCTGG 57.032 41.667 5.18 0.00 31.40 3.86
197 200 3.713764 CCCTTCCATGGACTCATTCTAGT 59.286 47.826 15.91 0.00 0.00 2.57
204 207 0.477597 AACCCCCTTCCATGGACTCA 60.478 55.000 15.91 0.00 0.00 3.41
209 212 3.031013 GTTCAATAACCCCCTTCCATGG 58.969 50.000 4.97 4.97 0.00 3.66
212 215 2.026636 CGAGTTCAATAACCCCCTTCCA 60.027 50.000 0.00 0.00 36.15 3.53
213 216 2.640184 CGAGTTCAATAACCCCCTTCC 58.360 52.381 0.00 0.00 36.15 3.46
220 223 1.666189 GCCTCTGCGAGTTCAATAACC 59.334 52.381 0.00 0.00 36.15 2.85
222 225 1.277842 TGGCCTCTGCGAGTTCAATAA 59.722 47.619 3.32 0.00 38.85 1.40
232 236 3.869272 GCAACGATGGCCTCTGCG 61.869 66.667 3.32 4.87 38.85 5.18
246 250 0.319040 GTGTCTCACTCGAGCTGCAA 60.319 55.000 13.61 0.00 39.30 4.08
266 270 3.194542 CCTCCTCTTCTTCGACATGTTCT 59.805 47.826 0.00 0.00 0.00 3.01
267 271 3.193691 TCCTCCTCTTCTTCGACATGTTC 59.806 47.826 0.00 0.00 0.00 3.18
286 290 4.148825 GGCGGCGACTCATGTCCT 62.149 66.667 12.98 0.00 39.94 3.85
293 297 4.883300 CTACGACGGCGGCGACTC 62.883 72.222 43.97 24.19 43.17 3.36
325 329 2.846371 CAGCTAAGCGGTGCTTCTT 58.154 52.632 7.40 0.00 46.77 2.52
340 344 4.994201 TCGACACCGACACGCAGC 62.994 66.667 0.00 0.00 40.30 5.25
427 431 3.609475 CGATTCGGTCGCTCTATATAGC 58.391 50.000 4.75 0.05 44.33 2.97
449 453 0.812811 GGATTTCGGGTTACCTCCGC 60.813 60.000 0.00 0.00 46.43 5.54
461 466 1.668419 AAATCGGCAGGAGGATTTCG 58.332 50.000 0.00 0.00 38.18 3.46
479 484 1.817217 CTCGCGCGCATATCCGAAAA 61.817 55.000 32.61 1.35 0.00 2.29
506 511 2.298446 AGCTCATACGACCATGGAGATG 59.702 50.000 21.47 14.93 0.00 2.90
513 518 0.385751 CACGGAGCTCATACGACCAT 59.614 55.000 17.19 0.00 0.00 3.55
531 536 1.229082 AGAGGAGGGTAACACGGCA 60.229 57.895 0.00 0.00 39.74 5.69
562 567 2.100989 AGTTAGACCGCTAGGAACTGG 58.899 52.381 0.00 0.00 41.52 4.00
564 569 2.492484 CACAGTTAGACCGCTAGGAACT 59.508 50.000 0.00 0.00 46.37 3.01
604 609 3.610040 TCACTATTTGACCTGCATCGT 57.390 42.857 0.00 0.00 0.00 3.73
612 617 6.980051 AGTTACCGAATTCACTATTTGACC 57.020 37.500 6.22 0.00 32.26 4.02
727 732 3.587933 GTTTGCGTGTCGGGGCAA 61.588 61.111 0.00 0.00 46.52 4.52
787 793 3.342627 CAAGAAACGGGCGCACGA 61.343 61.111 41.88 0.00 37.61 4.35
793 799 2.050442 CCGCAACAAGAAACGGGC 60.050 61.111 0.00 0.00 41.95 6.13
896 946 2.077803 TGGAAGGGAAAGATTTGGGGA 58.922 47.619 0.00 0.00 0.00 4.81
961 1013 2.122989 TGGGGGATAGAGCGGACC 60.123 66.667 0.00 0.00 0.00 4.46
1029 1081 3.245514 TGGTACTAGTAGTTGCTGGAGGT 60.246 47.826 8.40 0.00 0.00 3.85
1380 1437 2.969157 CACAACCGTGCATGCAAAA 58.031 47.368 24.58 0.00 36.06 2.44
1381 1438 4.726039 CACAACCGTGCATGCAAA 57.274 50.000 24.58 0.00 36.06 3.68
1399 1456 6.312399 CAAATATAGCGATTTGTAGGGCAA 57.688 37.500 11.43 0.00 40.46 4.52
1516 1574 5.798125 TCACACATCAAAACTCTCTCTCT 57.202 39.130 0.00 0.00 0.00 3.10
1792 1851 2.666190 CACAGTGACACGCTGGGG 60.666 66.667 15.06 5.01 45.11 4.96
1802 1861 1.206849 TGCACAGACAGAACACAGTGA 59.793 47.619 7.81 0.00 0.00 3.41
1914 1973 9.872757 AACATGTGTACTTCGTTGTAAATAAAG 57.127 29.630 0.00 0.00 0.00 1.85
1952 2012 3.142951 CTCTCACCCTGATACTACCGAG 58.857 54.545 0.00 0.00 0.00 4.63
1953 2013 2.508716 ACTCTCACCCTGATACTACCGA 59.491 50.000 0.00 0.00 0.00 4.69
1955 2015 6.980416 ATTAACTCTCACCCTGATACTACC 57.020 41.667 0.00 0.00 0.00 3.18
1956 2016 6.702282 GCAATTAACTCTCACCCTGATACTAC 59.298 42.308 0.00 0.00 0.00 2.73
1957 2017 6.382859 TGCAATTAACTCTCACCCTGATACTA 59.617 38.462 0.00 0.00 0.00 1.82
1958 2018 5.189736 TGCAATTAACTCTCACCCTGATACT 59.810 40.000 0.00 0.00 0.00 2.12
1959 2019 5.294552 GTGCAATTAACTCTCACCCTGATAC 59.705 44.000 0.00 0.00 0.00 2.24
1960 2020 5.045942 TGTGCAATTAACTCTCACCCTGATA 60.046 40.000 0.00 0.00 0.00 2.15
1961 2021 4.263462 TGTGCAATTAACTCTCACCCTGAT 60.263 41.667 0.00 0.00 0.00 2.90
1962 2022 3.072330 TGTGCAATTAACTCTCACCCTGA 59.928 43.478 0.00 0.00 0.00 3.86
1963 2023 3.411446 TGTGCAATTAACTCTCACCCTG 58.589 45.455 0.00 0.00 0.00 4.45
1964 2024 3.327757 TCTGTGCAATTAACTCTCACCCT 59.672 43.478 0.00 0.00 0.00 4.34
1965 2025 3.674997 TCTGTGCAATTAACTCTCACCC 58.325 45.455 0.00 0.00 0.00 4.61
1966 2026 4.757149 ACTTCTGTGCAATTAACTCTCACC 59.243 41.667 0.00 0.00 0.00 4.02
1967 2027 5.931441 ACTTCTGTGCAATTAACTCTCAC 57.069 39.130 0.00 0.00 0.00 3.51
1968 2028 5.932303 GGTACTTCTGTGCAATTAACTCTCA 59.068 40.000 0.00 0.00 0.00 3.27
1969 2029 5.932303 TGGTACTTCTGTGCAATTAACTCTC 59.068 40.000 0.00 0.00 0.00 3.20
2472 2838 9.373603 TGTTTTAGTGCACTAATATGTAATCGT 57.626 29.630 33.72 5.48 38.16 3.73
2536 2903 8.122952 ACTTATTGCGTAAAATCATTCTAGCAC 58.877 33.333 0.00 0.00 32.82 4.40
3154 3533 2.544685 CTCGTGTTTCTATCCAGGCAG 58.455 52.381 0.00 0.00 0.00 4.85
3155 3534 1.405526 GCTCGTGTTTCTATCCAGGCA 60.406 52.381 0.00 0.00 0.00 4.75
3243 3629 2.953640 AGTAAACGAAAAATCGCGCA 57.046 40.000 8.75 0.00 36.44 6.09
3341 3732 7.827701 TCACATAAATACCCGTTATTTTTGCA 58.172 30.769 12.85 0.00 40.27 4.08
3458 3855 4.271687 CAAATCAGGCTAAAACGCGTATC 58.728 43.478 14.46 0.00 0.00 2.24
3501 3898 4.513692 TGCTAATTTTTGCGTGTCAGTACT 59.486 37.500 0.00 0.00 0.00 2.73
3608 4014 1.573932 CGCCGTCACTTGCAATCAA 59.426 52.632 0.00 0.00 0.00 2.57
3855 4288 2.272797 CCGGACGAGGAGAGGAGT 59.727 66.667 0.00 0.00 0.00 3.85
3975 4408 3.691342 TCGGAGTTCCACAGGCGG 61.691 66.667 0.00 0.00 35.14 6.13
3993 4426 1.884926 GCGGAAAGAGCTCCCGATG 60.885 63.158 27.53 10.58 45.58 3.84
4379 5093 0.669318 TGCTTGGCACACGTACTAGC 60.669 55.000 0.00 0.00 39.29 3.42
4380 5094 1.726791 CTTGCTTGGCACACGTACTAG 59.273 52.381 0.00 0.00 38.71 2.57
4381 5095 1.341852 TCTTGCTTGGCACACGTACTA 59.658 47.619 0.00 0.00 38.71 1.82
4382 5096 0.105964 TCTTGCTTGGCACACGTACT 59.894 50.000 0.00 0.00 38.71 2.73
4383 5097 1.135972 CATCTTGCTTGGCACACGTAC 60.136 52.381 0.00 0.00 38.71 3.67
4405 5119 4.811557 ACTGCTATACCAAAAATCTCTCGC 59.188 41.667 0.00 0.00 0.00 5.03
4446 5160 2.047769 TAGCCCCAGTTAAACCTCCA 57.952 50.000 0.00 0.00 0.00 3.86
4533 5247 3.119531 GGTGCATTTGGATCGAACATCAA 60.120 43.478 0.00 0.00 0.00 2.57
4547 5261 3.906660 TCGAAGACGAGGTGCATTT 57.093 47.368 0.00 0.00 43.81 2.32
4563 5277 6.740110 ACTGTAGATGCTCTAAGGTTTATCG 58.260 40.000 0.00 0.00 29.58 2.92
4564 5278 6.858993 CGACTGTAGATGCTCTAAGGTTTATC 59.141 42.308 0.00 0.00 29.58 1.75
4565 5279 6.239064 CCGACTGTAGATGCTCTAAGGTTTAT 60.239 42.308 0.00 0.00 29.58 1.40
4566 5280 5.067413 CCGACTGTAGATGCTCTAAGGTTTA 59.933 44.000 0.00 0.00 29.58 2.01
4567 5281 4.142138 CCGACTGTAGATGCTCTAAGGTTT 60.142 45.833 0.00 0.00 29.58 3.27
4568 5282 3.381908 CCGACTGTAGATGCTCTAAGGTT 59.618 47.826 0.00 0.00 29.58 3.50
4569 5283 2.952978 CCGACTGTAGATGCTCTAAGGT 59.047 50.000 0.00 0.00 29.58 3.50
4570 5284 3.003897 GTCCGACTGTAGATGCTCTAAGG 59.996 52.174 0.00 0.00 29.58 2.69
4571 5285 3.880490 AGTCCGACTGTAGATGCTCTAAG 59.120 47.826 0.00 0.00 29.58 2.18
4572 5286 3.887352 AGTCCGACTGTAGATGCTCTAA 58.113 45.455 0.00 0.00 29.58 2.10
4573 5287 3.562343 AGTCCGACTGTAGATGCTCTA 57.438 47.619 0.00 0.00 0.00 2.43
4574 5288 2.425312 CAAGTCCGACTGTAGATGCTCT 59.575 50.000 0.65 0.00 0.00 4.09
4575 5289 2.480416 CCAAGTCCGACTGTAGATGCTC 60.480 54.545 0.65 0.00 0.00 4.26
4576 5290 1.478510 CCAAGTCCGACTGTAGATGCT 59.521 52.381 0.65 0.00 0.00 3.79
4577 5291 1.927895 CCAAGTCCGACTGTAGATGC 58.072 55.000 0.65 0.00 0.00 3.91
4578 5292 1.204704 TGCCAAGTCCGACTGTAGATG 59.795 52.381 0.65 0.00 0.00 2.90
4579 5293 1.557099 TGCCAAGTCCGACTGTAGAT 58.443 50.000 0.65 0.00 0.00 1.98
4580 5294 1.334160 TTGCCAAGTCCGACTGTAGA 58.666 50.000 0.65 0.00 0.00 2.59
4581 5295 2.163818 TTTGCCAAGTCCGACTGTAG 57.836 50.000 0.65 0.00 0.00 2.74
4582 5296 2.851263 ATTTGCCAAGTCCGACTGTA 57.149 45.000 0.65 0.00 0.00 2.74
4583 5297 1.880027 GAATTTGCCAAGTCCGACTGT 59.120 47.619 0.65 0.00 0.00 3.55
4584 5298 1.135972 CGAATTTGCCAAGTCCGACTG 60.136 52.381 0.65 0.00 0.00 3.51
4585 5299 1.156736 CGAATTTGCCAAGTCCGACT 58.843 50.000 0.00 0.00 0.00 4.18
4586 5300 0.168128 CCGAATTTGCCAAGTCCGAC 59.832 55.000 0.00 0.00 0.00 4.79
4587 5301 1.582610 GCCGAATTTGCCAAGTCCGA 61.583 55.000 0.00 0.00 0.00 4.55
4588 5302 1.154035 GCCGAATTTGCCAAGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
4589 5303 4.889427 GCCGAATTTGCCAAGTCC 57.111 55.556 0.00 0.00 0.00 3.85
4596 5310 0.536724 ATTTGAGGGGCCGAATTTGC 59.463 50.000 0.00 0.00 0.00 3.68
4597 5311 1.740043 GCATTTGAGGGGCCGAATTTG 60.740 52.381 0.00 0.00 0.00 2.32
4598 5312 0.536724 GCATTTGAGGGGCCGAATTT 59.463 50.000 0.00 0.00 0.00 1.82
4599 5313 1.666209 CGCATTTGAGGGGCCGAATT 61.666 55.000 0.00 0.00 0.00 2.17
4600 5314 2.120909 CGCATTTGAGGGGCCGAAT 61.121 57.895 0.00 0.00 0.00 3.34
4601 5315 2.749839 CGCATTTGAGGGGCCGAA 60.750 61.111 0.00 0.00 0.00 4.30
4604 5318 4.133796 GTGCGCATTTGAGGGGCC 62.134 66.667 15.91 0.00 42.86 5.80
4605 5319 4.481112 CGTGCGCATTTGAGGGGC 62.481 66.667 15.91 0.00 43.69 5.80
4606 5320 3.814268 CCGTGCGCATTTGAGGGG 61.814 66.667 15.91 2.78 0.00 4.79
4607 5321 2.114670 ATCCGTGCGCATTTGAGGG 61.115 57.895 15.91 5.03 0.00 4.30
4608 5322 1.063006 CATCCGTGCGCATTTGAGG 59.937 57.895 15.91 12.72 0.00 3.86
4609 5323 0.521867 CACATCCGTGCGCATTTGAG 60.522 55.000 15.91 6.99 36.06 3.02
4610 5324 1.501292 CACATCCGTGCGCATTTGA 59.499 52.632 15.91 11.38 36.06 2.69
4611 5325 4.060658 CACATCCGTGCGCATTTG 57.939 55.556 15.91 11.70 36.06 2.32
4622 5336 2.436646 CTGCCCACGGACACATCC 60.437 66.667 0.00 0.00 42.28 3.51
4623 5337 2.034879 CACTGCCCACGGACACATC 61.035 63.158 0.00 0.00 0.00 3.06
4624 5338 1.841302 ATCACTGCCCACGGACACAT 61.841 55.000 0.00 0.00 0.00 3.21
4625 5339 2.449031 GATCACTGCCCACGGACACA 62.449 60.000 0.00 0.00 0.00 3.72
4626 5340 1.741770 GATCACTGCCCACGGACAC 60.742 63.158 0.00 0.00 0.00 3.67
4627 5341 2.662596 GATCACTGCCCACGGACA 59.337 61.111 0.00 0.00 0.00 4.02
4628 5342 2.509336 CGATCACTGCCCACGGAC 60.509 66.667 0.00 0.00 0.00 4.79
4629 5343 3.770040 CCGATCACTGCCCACGGA 61.770 66.667 0.00 0.00 45.31 4.69
4630 5344 3.770040 TCCGATCACTGCCCACGG 61.770 66.667 0.00 0.00 44.09 4.94
4631 5345 2.509336 GTCCGATCACTGCCCACG 60.509 66.667 0.00 0.00 0.00 4.94
4632 5346 1.091771 CATGTCCGATCACTGCCCAC 61.092 60.000 0.00 0.00 0.00 4.61
4633 5347 1.221566 CATGTCCGATCACTGCCCA 59.778 57.895 0.00 0.00 0.00 5.36
4634 5348 2.182842 GCATGTCCGATCACTGCCC 61.183 63.158 0.00 0.00 0.00 5.36
4635 5349 2.182842 GGCATGTCCGATCACTGCC 61.183 63.158 9.36 9.36 44.91 4.85
4636 5350 1.153289 AGGCATGTCCGATCACTGC 60.153 57.895 0.00 0.00 40.77 4.40
4637 5351 0.176449 TGAGGCATGTCCGATCACTG 59.824 55.000 0.00 0.00 40.77 3.66
4638 5352 0.904649 TTGAGGCATGTCCGATCACT 59.095 50.000 0.00 0.00 40.77 3.41
4639 5353 1.737838 TTTGAGGCATGTCCGATCAC 58.262 50.000 0.00 0.00 40.77 3.06
4640 5354 2.715749 ATTTGAGGCATGTCCGATCA 57.284 45.000 0.00 0.00 40.77 2.92
4641 5355 3.378112 TGAAATTTGAGGCATGTCCGATC 59.622 43.478 0.00 0.00 40.77 3.69
4642 5356 3.355378 TGAAATTTGAGGCATGTCCGAT 58.645 40.909 0.00 0.00 40.77 4.18
4643 5357 2.789213 TGAAATTTGAGGCATGTCCGA 58.211 42.857 0.00 0.00 40.77 4.55
4644 5358 3.191162 TCTTGAAATTTGAGGCATGTCCG 59.809 43.478 0.00 0.00 40.77 4.79
4645 5359 4.789012 TCTTGAAATTTGAGGCATGTCC 57.211 40.909 0.00 0.00 0.00 4.02
4646 5360 6.401796 GCAATTCTTGAAATTTGAGGCATGTC 60.402 38.462 0.00 0.00 0.00 3.06
4647 5361 5.410439 GCAATTCTTGAAATTTGAGGCATGT 59.590 36.000 0.00 0.00 0.00 3.21
4648 5362 5.410132 TGCAATTCTTGAAATTTGAGGCATG 59.590 36.000 0.00 0.00 0.00 4.06
4649 5363 5.553123 TGCAATTCTTGAAATTTGAGGCAT 58.447 33.333 0.00 0.00 0.00 4.40
4650 5364 4.958509 TGCAATTCTTGAAATTTGAGGCA 58.041 34.783 0.00 0.00 0.00 4.75
4651 5365 5.064325 GGATGCAATTCTTGAAATTTGAGGC 59.936 40.000 0.00 0.00 0.00 4.70
4652 5366 6.091713 GTGGATGCAATTCTTGAAATTTGAGG 59.908 38.462 0.00 0.00 0.00 3.86
4653 5367 6.872020 AGTGGATGCAATTCTTGAAATTTGAG 59.128 34.615 0.00 0.00 0.00 3.02
4654 5368 6.761312 AGTGGATGCAATTCTTGAAATTTGA 58.239 32.000 0.00 0.00 0.00 2.69
4655 5369 6.183360 CGAGTGGATGCAATTCTTGAAATTTG 60.183 38.462 0.00 0.00 0.00 2.32
4656 5370 5.865552 CGAGTGGATGCAATTCTTGAAATTT 59.134 36.000 0.00 0.00 0.00 1.82
4657 5371 5.047802 ACGAGTGGATGCAATTCTTGAAATT 60.048 36.000 0.00 0.00 0.00 1.82
4658 5372 4.460382 ACGAGTGGATGCAATTCTTGAAAT 59.540 37.500 0.00 0.00 0.00 2.17
4659 5373 3.820467 ACGAGTGGATGCAATTCTTGAAA 59.180 39.130 0.00 0.00 0.00 2.69
4660 5374 3.411446 ACGAGTGGATGCAATTCTTGAA 58.589 40.909 0.00 0.00 0.00 2.69
4661 5375 3.002791 GACGAGTGGATGCAATTCTTGA 58.997 45.455 0.00 0.00 0.00 3.02
4662 5376 2.222886 CGACGAGTGGATGCAATTCTTG 60.223 50.000 0.00 0.00 0.00 3.02
4663 5377 2.002586 CGACGAGTGGATGCAATTCTT 58.997 47.619 0.00 0.00 0.00 2.52
4664 5378 1.066858 ACGACGAGTGGATGCAATTCT 60.067 47.619 0.00 0.00 0.00 2.40
4665 5379 1.324736 GACGACGAGTGGATGCAATTC 59.675 52.381 0.00 0.00 0.00 2.17
4666 5380 1.359848 GACGACGAGTGGATGCAATT 58.640 50.000 0.00 0.00 0.00 2.32
4667 5381 0.802222 CGACGACGAGTGGATGCAAT 60.802 55.000 0.00 0.00 42.66 3.56
4668 5382 1.443702 CGACGACGAGTGGATGCAA 60.444 57.895 0.00 0.00 42.66 4.08
4669 5383 2.178273 CGACGACGAGTGGATGCA 59.822 61.111 0.00 0.00 42.66 3.96
4670 5384 2.579787 CCGACGACGAGTGGATGC 60.580 66.667 9.28 0.00 42.66 3.91
4671 5385 1.062685 CTCCGACGACGAGTGGATG 59.937 63.158 9.28 0.00 42.66 3.51
4672 5386 0.464013 ATCTCCGACGACGAGTGGAT 60.464 55.000 9.28 4.01 42.66 3.41
4673 5387 1.078637 ATCTCCGACGACGAGTGGA 60.079 57.895 9.28 4.56 42.66 4.02
4674 5388 1.062685 CATCTCCGACGACGAGTGG 59.937 63.158 9.28 0.00 42.66 4.00
4675 5389 0.247735 GACATCTCCGACGACGAGTG 60.248 60.000 9.28 4.48 42.66 3.51
4680 5394 0.167470 TCGTTGACATCTCCGACGAC 59.833 55.000 0.00 0.00 37.76 4.34
4692 5406 0.107703 TGGGCATGGAGATCGTTGAC 60.108 55.000 0.00 0.00 0.00 3.18
4693 5407 0.178767 CTGGGCATGGAGATCGTTGA 59.821 55.000 0.00 0.00 0.00 3.18
4695 5409 1.153086 GCTGGGCATGGAGATCGTT 60.153 57.895 0.00 0.00 0.00 3.85
4927 5648 1.941209 GCTTCAACATGGAGCAGACGA 60.941 52.381 5.76 0.00 0.00 4.20
4957 5678 2.584418 CGGAGCAGCATGAGTCGG 60.584 66.667 0.00 0.00 39.69 4.79
5008 5744 0.616111 GCAGACAGGGGAAGAGGAGA 60.616 60.000 0.00 0.00 0.00 3.71
5023 5759 1.618030 GAGGAGGAGGAGGAGCAGA 59.382 63.158 0.00 0.00 0.00 4.26
5071 5813 3.770040 ACACCGCCTGCATCGCTA 61.770 61.111 4.59 0.00 0.00 4.26
5086 5830 1.506309 GACATGACAAGCCGCACACA 61.506 55.000 0.00 0.00 0.00 3.72
5090 5836 2.741985 CGGACATGACAAGCCGCA 60.742 61.111 0.00 0.00 37.08 5.69
5091 5837 3.499737 CCGGACATGACAAGCCGC 61.500 66.667 0.00 0.00 42.29 6.53
5099 5846 3.081061 CCAACAAAAGATCCGGACATGA 58.919 45.455 6.12 0.00 0.00 3.07
5101 5848 3.433306 TCCAACAAAAGATCCGGACAT 57.567 42.857 6.12 0.00 0.00 3.06
5104 5851 3.678806 CGAGATCCAACAAAAGATCCGGA 60.679 47.826 6.61 6.61 39.83 5.14
5114 5861 0.459585 GCCGCTACGAGATCCAACAA 60.460 55.000 0.00 0.00 0.00 2.83
5172 5919 2.662596 GCACTCCGTCATGGTCCA 59.337 61.111 0.00 0.00 39.52 4.02
5250 5999 3.474570 GCCAGTCCGAGGCCATCT 61.475 66.667 5.01 0.00 46.50 2.90
5328 6127 0.899717 GCAGCCCAAGACCAAATCCA 60.900 55.000 0.00 0.00 0.00 3.41
5409 6231 0.037046 GAAACGCCCGGAAACCTAGA 60.037 55.000 0.73 0.00 0.00 2.43
5412 6234 2.281970 GGAAACGCCCGGAAACCT 60.282 61.111 0.73 0.00 0.00 3.50
5461 6300 5.570844 GCCTAAATATGGGACGGATATGTGT 60.571 44.000 0.00 0.00 0.00 3.72
5463 6302 4.783227 AGCCTAAATATGGGACGGATATGT 59.217 41.667 0.00 0.00 0.00 2.29
5494 6335 3.267233 TGGGCTGATTGGCACCCT 61.267 61.111 11.05 0.00 43.83 4.34
5503 6344 0.394352 CCTTAAACGCCTGGGCTGAT 60.394 55.000 10.04 0.00 39.32 2.90
5511 6352 1.969589 CAACGGGCCTTAAACGCCT 60.970 57.895 0.84 0.00 46.24 5.52
5547 6391 2.223377 GGTTGACCTGTCACGATTTGTC 59.777 50.000 0.00 0.00 39.66 3.18
5549 6393 1.194547 CGGTTGACCTGTCACGATTTG 59.805 52.381 0.00 0.00 39.66 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.