Multiple sequence alignment - TraesCS6B01G265300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G265300 chr6B 100.000 9524 0 0 1 9524 477216505 477226028 0.000000e+00 17588.0
1 TraesCS6B01G265300 chr6B 90.164 122 6 1 7945 8066 454523095 454523210 4.610000e-33 154.0
2 TraesCS6B01G265300 chr6D 96.142 8916 182 51 674 9500 309579641 309588483 0.000000e+00 14410.0
3 TraesCS6B01G265300 chr6D 85.157 667 65 14 13 649 309578871 309579533 0.000000e+00 652.0
4 TraesCS6B01G265300 chr6D 89.247 93 5 5 3890 3979 115044633 115044543 2.810000e-20 111.0
5 TraesCS6B01G265300 chr6A 93.311 3259 176 21 675 3904 446294108 446297353 0.000000e+00 4772.0
6 TraesCS6B01G265300 chr6A 88.365 1676 109 38 5497 7147 446299307 446300921 0.000000e+00 1936.0
7 TraesCS6B01G265300 chr6A 93.019 1060 53 8 3983 5040 446297356 446298396 0.000000e+00 1528.0
8 TraesCS6B01G265300 chr6A 91.281 1124 64 13 8173 9279 446301047 446302153 0.000000e+00 1502.0
9 TraesCS6B01G265300 chr6A 86.226 363 30 10 5036 5382 446298938 446299296 9.030000e-100 375.0
10 TraesCS6B01G265300 chr6A 82.673 404 37 9 27 406 446293095 446293489 2.560000e-85 327.0
11 TraesCS6B01G265300 chr6A 89.401 217 20 2 399 614 446293892 446294106 4.380000e-68 270.0
12 TraesCS6B01G265300 chr4B 88.024 334 37 3 7180 7512 173358907 173359238 8.970000e-105 392.0
13 TraesCS6B01G265300 chr5D 81.840 413 56 16 7223 7628 498662352 498662752 7.130000e-86 329.0
14 TraesCS6B01G265300 chr5D 86.139 101 10 4 3887 3984 504792252 504792351 1.310000e-18 106.0
15 TraesCS6B01G265300 chr5D 94.118 51 2 1 5414 5464 177683508 177683459 1.030000e-09 76.8
16 TraesCS6B01G265300 chr2A 88.353 249 29 0 2272 2520 612849849 612849601 5.590000e-77 300.0
17 TraesCS6B01G265300 chr2A 86.175 217 21 6 7178 7392 148595209 148595418 9.620000e-55 226.0
18 TraesCS6B01G265300 chr2D 87.160 257 33 0 2264 2520 471220366 471220110 9.350000e-75 292.0
19 TraesCS6B01G265300 chr2D 93.204 103 7 0 5600 5702 471217194 471217092 1.660000e-32 152.0
20 TraesCS6B01G265300 chr2D 84.071 113 12 6 3890 3998 633304913 633304803 4.700000e-18 104.0
21 TraesCS6B01G265300 chr2B 86.770 257 34 0 2264 2520 550403956 550403700 4.350000e-73 287.0
22 TraesCS6B01G265300 chr2B 93.204 103 7 0 5600 5702 550400873 550400771 1.660000e-32 152.0
23 TraesCS6B01G265300 chr2B 95.918 49 2 0 5423 5471 622914013 622914061 7.930000e-11 80.5
24 TraesCS6B01G265300 chr2B 88.710 62 6 1 7178 7239 338762316 338762256 3.690000e-09 75.0
25 TraesCS6B01G265300 chr7A 85.782 211 24 4 7174 7382 726415042 726414836 1.610000e-52 219.0
26 TraesCS6B01G265300 chr7A 86.275 204 20 5 7178 7378 19560552 19560750 2.080000e-51 215.0
27 TraesCS6B01G265300 chr7A 84.906 106 11 5 3890 3992 15493921 15493818 1.690000e-17 102.0
28 TraesCS6B01G265300 chrUn 85.714 210 21 6 7178 7382 418475648 418475443 7.490000e-51 213.0
29 TraesCS6B01G265300 chrUn 97.619 42 1 0 5423 5464 474064259 474064218 1.330000e-08 73.1
30 TraesCS6B01G265300 chr4A 88.462 182 14 4 7178 7356 656781321 656781498 7.490000e-51 213.0
31 TraesCS6B01G265300 chr3A 86.207 203 21 5 7178 7378 29432216 29432019 7.490000e-51 213.0
32 TraesCS6B01G265300 chr3A 89.247 93 5 5 3890 3979 142037579 142037489 2.810000e-20 111.0
33 TraesCS6B01G265300 chr3A 100.000 45 0 0 5423 5467 150715891 150715935 6.130000e-12 84.2
34 TraesCS6B01G265300 chr3A 95.745 47 1 1 5419 5465 130843934 130843889 3.690000e-09 75.0
35 TraesCS6B01G265300 chr7D 88.172 93 6 5 3890 3979 94444525 94444615 1.310000e-18 106.0
36 TraesCS6B01G265300 chr1B 86.735 98 8 5 3890 3984 118741775 118741680 4.700000e-18 104.0
37 TraesCS6B01G265300 chr7B 83.636 110 13 5 3890 3996 453588244 453588351 2.190000e-16 99.0
38 TraesCS6B01G265300 chr5A 97.826 46 1 0 5422 5467 598666729 598666774 7.930000e-11 80.5
39 TraesCS6B01G265300 chr1D 97.826 46 1 0 5422 5467 413584622 413584577 7.930000e-11 80.5
40 TraesCS6B01G265300 chr5B 94.118 51 2 1 5414 5464 192382541 192382492 1.030000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G265300 chr6B 477216505 477226028 9523 False 17588.0 17588 100.000000 1 9524 1 chr6B.!!$F2 9523
1 TraesCS6B01G265300 chr6D 309578871 309588483 9612 False 7531.0 14410 90.649500 13 9500 2 chr6D.!!$F1 9487
2 TraesCS6B01G265300 chr6A 446293095 446302153 9058 False 1530.0 4772 89.182286 27 9279 7 chr6A.!!$F1 9252
3 TraesCS6B01G265300 chr2D 471217092 471220366 3274 True 222.0 292 90.182000 2264 5702 2 chr2D.!!$R2 3438
4 TraesCS6B01G265300 chr2B 550400771 550403956 3185 True 219.5 287 89.987000 2264 5702 2 chr2B.!!$R2 3438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 179 0.258774 ATAGTGGGCCGGCTCAAATT 59.741 50.000 35.00 22.12 0.00 1.82 F
1486 2008 0.178767 CCGAATGCTGTGGGAGATGA 59.821 55.000 0.00 0.00 0.00 2.92 F
1972 2497 1.134788 ACGGCGATCCTAGTTTTGGAG 60.135 52.381 16.62 0.00 36.99 3.86 F
3663 5040 1.467342 GCCTACGCCGATTCTGTTTTT 59.533 47.619 0.00 0.00 0.00 1.94 F
4331 5720 0.324943 TGCTTCTGTAGTCTTGGGCC 59.675 55.000 0.00 0.00 0.00 5.80 F
5010 6516 3.704566 TGTATGCTATCTGGTCCGAGTTT 59.295 43.478 0.00 0.00 0.00 2.66 F
5112 7164 4.508461 TTGATGATGAAAAGGCACAGTG 57.492 40.909 0.00 0.00 0.00 3.66 F
5237 7307 5.659525 TCCCCGAAGAGATACTTGTCAAATA 59.340 40.000 0.00 0.00 39.13 1.40 F
6751 8840 2.710471 TGCCAATGATAGGATAGTGCCA 59.290 45.455 0.00 0.00 0.00 4.92 F
7669 9783 0.035056 CCGCACCCAGATCTTTCCTT 60.035 55.000 0.00 0.00 0.00 3.36 F
7813 9949 0.742281 CGTGCTGGTTCTCCCATCTG 60.742 60.000 0.00 0.00 44.15 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2478 1.571919 CTCCAAAACTAGGATCGCCG 58.428 55.000 0.00 0.00 39.96 6.46 R
3301 3894 3.837355 AGGGCATCTTTCAACAGTTCTT 58.163 40.909 0.00 0.00 0.00 2.52 R
3957 5338 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18 R
5517 7603 1.748493 TCCAGCAACAAGTCCAACAAC 59.252 47.619 0.00 0.00 0.00 3.32 R
6047 8134 1.452145 GGTGCATGTGGTCCGTGTTT 61.452 55.000 0.00 0.00 32.30 2.83 R
6698 8787 2.524440 TGGTCTATCTGAGGGGGAATCT 59.476 50.000 0.00 0.00 0.00 2.40 R
6699 8788 2.903135 CTGGTCTATCTGAGGGGGAATC 59.097 54.545 0.00 0.00 0.00 2.52 R
6772 8861 3.418995 AGTGAATGCATGAGAAAGCACT 58.581 40.909 0.00 3.22 44.49 4.40 R
7918 10054 0.032678 AGAAGCAGAGACACACACGG 59.967 55.000 0.00 0.00 0.00 4.94 R
8512 10665 1.194547 CAACGTCAATCAGAACACCCG 59.805 52.381 0.00 0.00 0.00 5.28 R
8765 10918 1.227853 ACACGACCAAGCTGGAACC 60.228 57.895 8.91 0.00 40.96 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 173 1.461461 ATGGTATAGTGGGCCGGCT 60.461 57.895 28.56 9.11 0.00 5.52
160 179 0.258774 ATAGTGGGCCGGCTCAAATT 59.741 50.000 35.00 22.12 0.00 1.82
173 192 0.605319 TCAAATTCTTGTCGCGCCCT 60.605 50.000 0.00 0.00 33.94 5.19
188 207 2.143419 CCCTCTCCCTTAGCCGCAT 61.143 63.158 0.00 0.00 0.00 4.73
189 208 1.700042 CCCTCTCCCTTAGCCGCATT 61.700 60.000 0.00 0.00 0.00 3.56
201 220 3.996150 AGCCGCATTCAATAATCTTGG 57.004 42.857 0.00 0.00 0.00 3.61
224 250 6.363577 GAAGAATTCGACATATTGCAAGGA 57.636 37.500 4.94 0.00 34.17 3.36
246 272 7.770201 AGGATGTGATACAAGATATCGATGAG 58.230 38.462 8.54 0.00 0.00 2.90
253 279 5.878406 ACAAGATATCGATGAGGGAACTT 57.122 39.130 8.54 0.00 44.43 2.66
278 304 7.230914 TGTGAAACACATGTAACGATTATTCG 58.769 34.615 0.00 5.51 45.67 3.34
300 326 3.849911 CGAGATACAAGCAGAAGAACCA 58.150 45.455 0.00 0.00 0.00 3.67
301 327 3.614616 CGAGATACAAGCAGAAGAACCAC 59.385 47.826 0.00 0.00 0.00 4.16
371 397 6.318648 TGAAGCTTATTATTTCCGTCAAGCAT 59.681 34.615 0.00 0.00 40.58 3.79
444 879 7.682787 AACCCAATCTCTGTATCTATGAACT 57.317 36.000 0.00 0.00 0.00 3.01
480 915 8.874745 TTAATAAAACGAAGCGAGATTTCTTG 57.125 30.769 0.00 0.00 0.00 3.02
481 916 3.813529 AAACGAAGCGAGATTTCTTGG 57.186 42.857 0.00 0.00 0.00 3.61
511 946 3.895041 ACCCAACAATTCTTGGTTCGATT 59.105 39.130 11.07 0.00 39.40 3.34
572 1007 5.685728 AGGTTCAAAATAGACCAGGATAGC 58.314 41.667 0.00 0.00 0.00 2.97
586 1023 4.339247 CCAGGATAGCTTGGTGGTAATTTG 59.661 45.833 0.00 0.00 36.56 2.32
591 1028 1.204704 GCTTGGTGGTAATTTGGGCTC 59.795 52.381 0.00 0.00 0.00 4.70
603 1040 8.774183 TGGTAATTTGGGCTCTAGAAGTTTATA 58.226 33.333 0.00 0.00 0.00 0.98
604 1041 9.794719 GGTAATTTGGGCTCTAGAAGTTTATAT 57.205 33.333 0.00 0.00 0.00 0.86
606 1043 8.697507 AATTTGGGCTCTAGAAGTTTATATGG 57.302 34.615 0.00 0.00 0.00 2.74
608 1045 4.907875 TGGGCTCTAGAAGTTTATATGGCT 59.092 41.667 0.00 0.00 0.00 4.75
609 1046 5.012148 TGGGCTCTAGAAGTTTATATGGCTC 59.988 44.000 0.00 0.00 0.00 4.70
649 1086 6.937436 ACCAGTTCAAGGTTTGTTTAGTAG 57.063 37.500 0.00 0.00 35.33 2.57
652 1089 7.713942 ACCAGTTCAAGGTTTGTTTAGTAGTAG 59.286 37.037 0.00 0.00 35.33 2.57
653 1090 7.713942 CCAGTTCAAGGTTTGTTTAGTAGTAGT 59.286 37.037 0.00 0.00 0.00 2.73
654 1091 9.754382 CAGTTCAAGGTTTGTTTAGTAGTAGTA 57.246 33.333 0.00 0.00 0.00 1.82
706 1225 3.612472 TTTTTCCGTTTTCAGGCGTAG 57.388 42.857 0.00 0.00 0.00 3.51
707 1226 1.515081 TTTCCGTTTTCAGGCGTAGG 58.485 50.000 0.00 0.00 0.00 3.18
764 1283 1.279271 CCTCCTCCAATTCCAACTCGT 59.721 52.381 0.00 0.00 0.00 4.18
926 1445 1.282157 CCGAATCCACTTCCCCTTTCT 59.718 52.381 0.00 0.00 0.00 2.52
1448 1970 6.254281 ACACATAGTTTAAGCATCACCAAC 57.746 37.500 0.00 0.00 0.00 3.77
1486 2008 0.178767 CCGAATGCTGTGGGAGATGA 59.821 55.000 0.00 0.00 0.00 2.92
1942 2467 3.244976 GTTTGTGATGCCTACATTGCAC 58.755 45.455 0.00 0.00 42.38 4.57
1953 2478 4.783242 CCTACATTGCACGCCAAATATAC 58.217 43.478 0.00 0.00 36.92 1.47
1970 2495 2.589798 TACGGCGATCCTAGTTTTGG 57.410 50.000 16.62 0.00 0.00 3.28
1972 2497 1.134788 ACGGCGATCCTAGTTTTGGAG 60.135 52.381 16.62 0.00 36.99 3.86
2031 2557 8.578308 ACCATAACATGCAAATCAATATTTCG 57.422 30.769 0.00 0.00 32.87 3.46
2189 2716 4.023291 TCCCTTGGATCTTTGGTTAATGC 58.977 43.478 0.00 0.00 0.00 3.56
2243 2770 3.565482 TCCTTGCTTTGTGTCTTGATGTC 59.435 43.478 0.00 0.00 0.00 3.06
2257 2784 9.425893 GTGTCTTGATGTCATCGTTATTATTTG 57.574 33.333 8.29 0.00 0.00 2.32
2978 3508 6.918892 TGTTATGGACGAGGTAATTCATTG 57.081 37.500 0.00 0.00 0.00 2.82
3249 3842 2.046023 TGCTCTGGTTCATGGCCG 60.046 61.111 0.00 0.00 0.00 6.13
3301 3894 2.354188 CGCACGTCACCGACTCAA 60.354 61.111 0.00 0.00 37.88 3.02
3633 5010 7.754027 CCATTTCAGAAGAAGAATTTGTAGCTG 59.246 37.037 0.00 0.00 34.71 4.24
3663 5040 1.467342 GCCTACGCCGATTCTGTTTTT 59.533 47.619 0.00 0.00 0.00 1.94
3973 5354 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4029 5410 7.862873 GGCATTAAGATCATTGCTTAAGTTACC 59.137 37.037 4.02 0.00 40.12 2.85
4077 5465 6.684686 TGACACACTGGTAAAGAGTATGTAC 58.315 40.000 0.00 0.00 0.00 2.90
4237 5626 3.197766 TCTTGGGTTACATGTCTAGCCTG 59.802 47.826 22.35 16.88 0.00 4.85
4331 5720 0.324943 TGCTTCTGTAGTCTTGGGCC 59.675 55.000 0.00 0.00 0.00 5.80
4384 5773 5.947228 TGTTTGTGCTTTCTTATGAGAGG 57.053 39.130 0.00 0.00 32.44 3.69
4957 6463 4.258543 CCTTCTGTATTGCCCGTTTTCTA 58.741 43.478 0.00 0.00 0.00 2.10
5010 6516 3.704566 TGTATGCTATCTGGTCCGAGTTT 59.295 43.478 0.00 0.00 0.00 2.66
5098 7150 9.562408 TGCCATTATGCAATTTATTTTGATGAT 57.438 25.926 0.00 0.00 38.56 2.45
5099 7151 9.820229 GCCATTATGCAATTTATTTTGATGATG 57.180 29.630 0.00 0.00 0.00 3.07
5112 7164 4.508461 TTGATGATGAAAAGGCACAGTG 57.492 40.909 0.00 0.00 0.00 3.66
5237 7307 5.659525 TCCCCGAAGAGATACTTGTCAAATA 59.340 40.000 0.00 0.00 39.13 1.40
5743 7829 6.313658 TCAATTTCTCATACCGTGACAATCAG 59.686 38.462 0.00 0.00 32.22 2.90
5750 7836 6.406370 TCATACCGTGACAATCAGATTTTCT 58.594 36.000 10.09 0.00 0.00 2.52
5755 7841 8.786826 ACCGTGACAATCAGATTTTCTTATTA 57.213 30.769 10.09 0.00 0.00 0.98
5756 7842 9.396022 ACCGTGACAATCAGATTTTCTTATTAT 57.604 29.630 10.09 0.00 0.00 1.28
5757 7843 9.655769 CCGTGACAATCAGATTTTCTTATTATG 57.344 33.333 10.09 0.00 0.00 1.90
5843 7930 7.226523 GCACAAAACAAAGGGATAGAAAAATGT 59.773 33.333 0.00 0.00 0.00 2.71
5918 8005 8.241367 CAGTAAAAAGTTCAACTAGTGGTGTTT 58.759 33.333 0.00 0.00 0.00 2.83
6030 8117 5.705441 TGAATCATTGTTACACCTCTTGGTC 59.295 40.000 0.00 0.00 46.60 4.02
6047 8134 6.224584 TCTTGGTCAATCATTGTTACACGTA 58.775 36.000 0.00 0.00 0.00 3.57
6378 8466 7.539034 AACACAGCCTTAATGGTTTTTATCT 57.461 32.000 0.00 0.00 38.35 1.98
6698 8787 4.565652 GGAGCTTGGGACTGAGATAAAACA 60.566 45.833 0.00 0.00 0.00 2.83
6699 8788 4.583871 AGCTTGGGACTGAGATAAAACAG 58.416 43.478 0.00 0.00 39.65 3.16
6750 8839 3.423539 TGCCAATGATAGGATAGTGCC 57.576 47.619 0.00 0.00 0.00 5.01
6751 8840 2.710471 TGCCAATGATAGGATAGTGCCA 59.290 45.455 0.00 0.00 0.00 4.92
6752 8841 3.331591 TGCCAATGATAGGATAGTGCCAT 59.668 43.478 0.00 0.00 0.00 4.40
6753 8842 4.535692 TGCCAATGATAGGATAGTGCCATA 59.464 41.667 0.00 0.00 0.00 2.74
6754 8843 5.192321 TGCCAATGATAGGATAGTGCCATAT 59.808 40.000 0.00 0.00 0.00 1.78
6755 8844 6.386635 TGCCAATGATAGGATAGTGCCATATA 59.613 38.462 0.00 0.00 0.00 0.86
6756 8845 7.072834 TGCCAATGATAGGATAGTGCCATATAT 59.927 37.037 0.00 0.00 0.00 0.86
6757 8846 7.941238 GCCAATGATAGGATAGTGCCATATATT 59.059 37.037 0.00 0.00 0.00 1.28
6758 8847 9.281371 CCAATGATAGGATAGTGCCATATATTG 57.719 37.037 0.00 0.00 0.00 1.90
6759 8848 8.781196 CAATGATAGGATAGTGCCATATATTGC 58.219 37.037 1.83 1.83 0.00 3.56
6760 8849 6.830912 TGATAGGATAGTGCCATATATTGCC 58.169 40.000 6.34 0.00 0.00 4.52
6761 8850 6.386635 TGATAGGATAGTGCCATATATTGCCA 59.613 38.462 6.34 0.00 0.00 4.92
6762 8851 5.519183 AGGATAGTGCCATATATTGCCAA 57.481 39.130 6.34 0.00 0.00 4.52
6763 8852 6.083487 AGGATAGTGCCATATATTGCCAAT 57.917 37.500 6.34 0.00 0.00 3.16
6764 8853 5.889853 AGGATAGTGCCATATATTGCCAATG 59.110 40.000 6.34 0.00 0.00 2.82
6765 8854 5.887598 GGATAGTGCCATATATTGCCAATGA 59.112 40.000 6.34 0.00 0.00 2.57
6766 8855 6.548622 GGATAGTGCCATATATTGCCAATGAT 59.451 38.462 6.34 0.00 0.00 2.45
6767 8856 7.720957 GGATAGTGCCATATATTGCCAATGATA 59.279 37.037 6.34 0.00 0.00 2.15
6768 8857 8.687292 ATAGTGCCATATATTGCCAATGATAG 57.313 34.615 6.34 0.00 0.00 2.08
6769 8858 5.889853 AGTGCCATATATTGCCAATGATAGG 59.110 40.000 6.34 0.00 0.00 2.57
6770 8859 5.887598 GTGCCATATATTGCCAATGATAGGA 59.112 40.000 6.34 0.00 0.00 2.94
6771 8860 6.548622 GTGCCATATATTGCCAATGATAGGAT 59.451 38.462 6.34 0.00 0.00 3.24
6772 8861 7.720957 GTGCCATATATTGCCAATGATAGGATA 59.279 37.037 6.34 0.00 0.00 2.59
6773 8862 7.940688 TGCCATATATTGCCAATGATAGGATAG 59.059 37.037 6.34 0.00 0.00 2.08
6774 8863 7.941238 GCCATATATTGCCAATGATAGGATAGT 59.059 37.037 0.00 0.00 0.00 2.12
6775 8864 9.281371 CCATATATTGCCAATGATAGGATAGTG 57.719 37.037 0.00 0.00 0.00 2.74
6776 8865 8.781196 CATATATTGCCAATGATAGGATAGTGC 58.219 37.037 0.00 0.00 0.00 4.40
6777 8866 4.712051 TTGCCAATGATAGGATAGTGCT 57.288 40.909 0.00 0.00 0.00 4.40
6778 8867 4.712051 TGCCAATGATAGGATAGTGCTT 57.288 40.909 0.00 0.00 0.00 3.91
6895 8986 1.593006 CGTGTCATGATCCTTAACCGC 59.407 52.381 0.00 0.00 0.00 5.68
6964 9055 3.803715 GCTCACTGTCACCTGAAGCTTTA 60.804 47.826 0.00 0.00 0.00 1.85
6966 9057 4.127171 TCACTGTCACCTGAAGCTTTAAC 58.873 43.478 0.00 0.00 0.00 2.01
7024 9124 4.620982 GTTTAATTGTGGAAGCTGCTTGT 58.379 39.130 21.25 0.00 0.00 3.16
7026 9126 3.923017 AATTGTGGAAGCTGCTTGTAC 57.077 42.857 21.25 17.41 0.00 2.90
7349 9462 2.030562 CCTCGGACGCCACAACTT 59.969 61.111 0.00 0.00 0.00 2.66
7359 9472 0.312102 GCCACAACTTGTCCTTGCTC 59.688 55.000 0.00 0.00 0.00 4.26
7415 9529 1.837051 TCTCCTGTGCTTGTCCGGT 60.837 57.895 0.00 0.00 0.00 5.28
7442 9556 4.653868 TCTCTACATATCGACCTCTTCCC 58.346 47.826 0.00 0.00 0.00 3.97
7469 9583 2.093021 AGATTTCCTCTGCTTCTGCTCC 60.093 50.000 0.00 0.00 40.48 4.70
7495 9609 4.625800 GCGATGGCTGTCTCCTTT 57.374 55.556 0.00 0.00 35.83 3.11
7543 9657 2.703798 CCTGCATCAACTTGGGCCG 61.704 63.158 0.00 0.00 0.00 6.13
7577 9691 2.119655 CCGCTAGGCCTCTACACGT 61.120 63.158 9.68 0.00 0.00 4.49
7669 9783 0.035056 CCGCACCCAGATCTTTCCTT 60.035 55.000 0.00 0.00 0.00 3.36
7670 9784 1.373570 CGCACCCAGATCTTTCCTTC 58.626 55.000 0.00 0.00 0.00 3.46
7672 9786 1.004745 GCACCCAGATCTTTCCTTCCA 59.995 52.381 0.00 0.00 0.00 3.53
7673 9787 2.943199 GCACCCAGATCTTTCCTTCCAG 60.943 54.545 0.00 0.00 0.00 3.86
7674 9788 1.283321 ACCCAGATCTTTCCTTCCAGC 59.717 52.381 0.00 0.00 0.00 4.85
7676 9790 1.283029 CCAGATCTTTCCTTCCAGCCA 59.717 52.381 0.00 0.00 0.00 4.75
7677 9791 2.641305 CAGATCTTTCCTTCCAGCCAG 58.359 52.381 0.00 0.00 0.00 4.85
7720 9856 2.279517 GCCGCCATCCACTACTCG 60.280 66.667 0.00 0.00 0.00 4.18
7751 9887 1.377725 CCACTGGAATTGAGCCGCT 60.378 57.895 0.00 0.00 0.00 5.52
7813 9949 0.742281 CGTGCTGGTTCTCCCATCTG 60.742 60.000 0.00 0.00 44.15 2.90
7824 9960 1.138661 CTCCCATCTGTCAGAGCCTTC 59.861 57.143 8.82 0.00 0.00 3.46
7918 10054 0.952984 GTTCTCCTCCTGCAGTGCAC 60.953 60.000 15.37 9.40 33.79 4.57
7920 10056 3.947132 CTCCTCCTGCAGTGCACCG 62.947 68.421 15.37 3.93 33.79 4.94
7941 10078 0.871057 GTGTGTCTCTGCTTCTTGCC 59.129 55.000 0.00 0.00 42.00 4.52
7959 10096 4.415150 TGGGCCTGCTGCTGCTAC 62.415 66.667 17.00 5.90 40.92 3.58
8031 10168 1.407989 GCTCTCCCTGGATTTGGAGTG 60.408 57.143 0.00 4.63 46.76 3.51
8186 10323 1.361668 CCGCGCAAAGCTGTCTGTAT 61.362 55.000 8.75 0.00 45.59 2.29
8413 10566 5.009610 TGTTCTTCATGTTTTTACCTCCTGC 59.990 40.000 0.00 0.00 0.00 4.85
8512 10665 3.930336 TCATGTGTGAGACAAGACATCC 58.070 45.455 0.00 0.00 38.36 3.51
8732 10885 3.181448 ACCCTGTTACTTACTGGTTGTGG 60.181 47.826 0.00 0.00 42.63 4.17
8765 10918 1.812571 GGTGCACACAAGTTATCCCAG 59.187 52.381 20.43 0.00 0.00 4.45
8786 10939 0.107410 TTCCAGCTTGGTCGTGTGTT 60.107 50.000 0.00 0.00 39.03 3.32
8891 11044 3.456277 ACCATTAGAGGGTGAACTGGATC 59.544 47.826 0.00 0.00 37.23 3.36
8998 11151 3.670627 GCTTTTGGCTATTGGTCGTGAAG 60.671 47.826 0.00 0.00 38.06 3.02
9269 11422 1.990799 TTCATTCTGTGCCGTCTACG 58.009 50.000 0.00 0.00 39.44 3.51
9333 11486 3.544684 TGCTGTATGCTTTCTACCATGG 58.455 45.455 11.19 11.19 43.37 3.66
9347 11500 8.876275 TTTCTACCATGGTATTTATGACGTAC 57.124 34.615 24.78 0.00 0.00 3.67
9349 11502 8.922931 TCTACCATGGTATTTATGACGTACTA 57.077 34.615 24.78 0.00 0.00 1.82
9378 11531 8.433421 TTCTTTGATGATTACGGGATTAGAAC 57.567 34.615 0.00 0.00 0.00 3.01
9393 11546 2.055684 AGAACGTCCCCTAGCTAGTC 57.944 55.000 19.31 8.39 0.00 2.59
9422 11575 5.426689 TGAGAAGAAGTGGTTCTGCATAT 57.573 39.130 0.00 0.00 42.59 1.78
9424 11577 5.877012 TGAGAAGAAGTGGTTCTGCATATTC 59.123 40.000 0.00 0.00 42.59 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 83 9.107177 TGAAAATATGTTCATGTTTGCAAACTT 57.893 25.926 35.09 28.43 35.02 2.66
81 85 9.713740 TTTGAAAATATGTTCATGTTTGCAAAC 57.286 25.926 30.95 30.95 36.14 2.93
154 173 0.605319 AGGGCGCGACAAGAATTTGA 60.605 50.000 17.00 0.00 37.73 2.69
160 179 3.760035 GGAGAGGGCGCGACAAGA 61.760 66.667 17.00 0.00 0.00 3.02
173 192 0.908910 TTGAATGCGGCTAAGGGAGA 59.091 50.000 0.00 0.00 0.00 3.71
180 199 4.713553 TCCAAGATTATTGAATGCGGCTA 58.286 39.130 0.00 0.00 0.00 3.93
188 207 8.560355 TGTCGAATTCTTCCAAGATTATTGAA 57.440 30.769 3.52 0.00 34.49 2.69
189 208 8.737168 ATGTCGAATTCTTCCAAGATTATTGA 57.263 30.769 3.52 0.00 34.49 2.57
201 220 6.363577 TCCTTGCAATATGTCGAATTCTTC 57.636 37.500 0.00 0.00 0.00 2.87
214 240 9.440773 GATATCTTGTATCACATCCTTGCAATA 57.559 33.333 0.00 0.00 0.00 1.90
224 250 6.665248 TCCCTCATCGATATCTTGTATCACAT 59.335 38.462 0.00 0.00 0.00 3.21
253 279 7.230914 CGAATAATCGTTACATGTGTTTCACA 58.769 34.615 9.11 5.07 45.03 3.58
278 304 2.605366 GGTTCTTCTGCTTGTATCTCGC 59.395 50.000 0.00 0.00 0.00 5.03
288 314 5.625150 ACTATGAAAAGTGGTTCTTCTGCT 58.375 37.500 0.00 0.00 35.02 4.24
357 383 2.418368 TAGGCATGCTTGACGGAAAT 57.582 45.000 18.92 0.00 35.32 2.17
361 387 0.659427 CACATAGGCATGCTTGACGG 59.341 55.000 18.92 5.43 35.32 4.79
362 388 0.028505 GCACATAGGCATGCTTGACG 59.971 55.000 18.92 5.55 38.84 4.35
371 397 3.574396 GACCTACATCTAGCACATAGGCA 59.426 47.826 8.35 0.00 36.63 4.75
385 411 2.910688 CCATAAGTGGCGACCTACAT 57.089 50.000 0.00 0.00 39.01 2.29
420 855 7.682787 AGTTCATAGATACAGAGATTGGGTT 57.317 36.000 0.00 0.00 0.00 4.11
444 879 7.021196 GCTTCGTTTTATTAAGCATCTGACAA 58.979 34.615 0.00 0.00 43.98 3.18
463 898 2.743636 TCCAAGAAATCTCGCTTCGT 57.256 45.000 0.00 0.00 0.00 3.85
480 915 5.065859 CCAAGAATTGTTGGGTTGTTTTTCC 59.934 40.000 23.48 0.00 46.99 3.13
481 916 6.117911 CCAAGAATTGTTGGGTTGTTTTTC 57.882 37.500 23.48 0.00 46.99 2.29
511 946 2.761767 CAGGGATTCATCAACATGGCAA 59.238 45.455 0.00 0.00 0.00 4.52
544 979 7.324388 TCCTGGTCTATTTTGAACCTTAAGA 57.676 36.000 3.36 0.00 0.00 2.10
547 982 7.127339 AGCTATCCTGGTCTATTTTGAACCTTA 59.873 37.037 0.00 0.00 0.00 2.69
572 1007 2.807676 AGAGCCCAAATTACCACCAAG 58.192 47.619 0.00 0.00 0.00 3.61
581 1018 7.231519 GCCATATAAACTTCTAGAGCCCAAATT 59.768 37.037 0.00 0.00 0.00 1.82
586 1023 5.483811 GAGCCATATAAACTTCTAGAGCCC 58.516 45.833 0.00 0.00 0.00 5.19
603 1040 6.039382 GGTAGACCAAAAATAAATCGAGCCAT 59.961 38.462 0.00 0.00 35.64 4.40
604 1041 5.355910 GGTAGACCAAAAATAAATCGAGCCA 59.644 40.000 0.00 0.00 35.64 4.75
605 1042 5.355910 TGGTAGACCAAAAATAAATCGAGCC 59.644 40.000 0.00 0.00 44.35 4.70
606 1043 6.093633 ACTGGTAGACCAAAAATAAATCGAGC 59.906 38.462 2.42 0.00 46.97 5.03
608 1045 7.662258 TGAACTGGTAGACCAAAAATAAATCGA 59.338 33.333 2.42 0.00 46.97 3.59
609 1046 7.812648 TGAACTGGTAGACCAAAAATAAATCG 58.187 34.615 2.42 0.00 46.97 3.34
616 1053 4.862371 ACCTTGAACTGGTAGACCAAAAA 58.138 39.130 2.42 0.00 46.97 1.94
621 1058 3.816994 ACAAACCTTGAACTGGTAGACC 58.183 45.455 0.00 0.00 36.69 3.85
706 1225 1.202568 GCCCTGCCAAATTTATCTGCC 60.203 52.381 0.00 0.00 0.00 4.85
707 1226 1.481772 TGCCCTGCCAAATTTATCTGC 59.518 47.619 0.00 0.00 0.00 4.26
886 1405 2.493278 GGATGGTGGAATCAAGGTGTTG 59.507 50.000 0.00 0.00 34.67 3.33
926 1445 0.452184 GAACAGCGACGAGGAGATCA 59.548 55.000 0.00 0.00 0.00 2.92
1469 1991 3.818180 AGAATCATCTCCCACAGCATTC 58.182 45.455 0.00 0.00 0.00 2.67
1486 2008 6.393171 GGTTGCTTAGCATCAGAAAAAGAAT 58.607 36.000 8.05 0.00 38.76 2.40
1631 2154 1.813513 CCATCTCCAGCTCACGTTTT 58.186 50.000 0.00 0.00 0.00 2.43
1953 2478 1.571919 CTCCAAAACTAGGATCGCCG 58.428 55.000 0.00 0.00 39.96 6.46
1970 2495 3.149196 TGGATTCAGACAAAACAGCCTC 58.851 45.455 0.00 0.00 0.00 4.70
1972 2497 3.507233 TCATGGATTCAGACAAAACAGCC 59.493 43.478 0.00 0.00 0.00 4.85
2031 2557 7.982354 AGTAACTAGCATCAAGGATCAAGTAAC 59.018 37.037 0.00 0.00 0.00 2.50
2189 2716 9.385902 CATTATGAATTAGCTTATTGAACACGG 57.614 33.333 2.03 0.00 0.00 4.94
2243 2770 9.199184 CAAAGAACGAGACAAATAATAACGATG 57.801 33.333 0.00 0.00 0.00 3.84
2257 2784 4.557205 ACATCCTGTACAAAGAACGAGAC 58.443 43.478 0.00 0.00 0.00 3.36
2978 3508 7.096558 GCAATGTGACTACTTAGATACGCTTAC 60.097 40.741 0.00 0.00 0.00 2.34
3249 3842 4.319549 GCAAAGAGTACTTAACACAGGTGC 60.320 45.833 0.00 0.00 35.05 5.01
3301 3894 3.837355 AGGGCATCTTTCAACAGTTCTT 58.163 40.909 0.00 0.00 0.00 2.52
3663 5040 7.774625 TCATATATTTGCATGTTTGAGTCAGGA 59.225 33.333 0.00 0.00 0.00 3.86
3906 5287 7.164122 TCTAACACTAGAAGTAACGGAGAGAA 58.836 38.462 0.00 0.00 30.89 2.87
3909 5290 8.043113 TGTATCTAACACTAGAAGTAACGGAGA 58.957 37.037 0.00 0.00 37.70 3.71
3957 5338 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3973 5354 4.885907 TCTCACTACCAACTATTACCTCCG 59.114 45.833 0.00 0.00 0.00 4.63
4056 5444 5.946298 TCGTACATACTCTTTACCAGTGTG 58.054 41.667 0.00 0.00 38.56 3.82
4077 5465 2.457366 ACAGACTAACCTTGCCTTCG 57.543 50.000 0.00 0.00 0.00 3.79
4300 5689 6.712095 AGACTACAGAAGCAAATTCATTCACA 59.288 34.615 0.00 0.00 40.67 3.58
4301 5690 7.138692 AGACTACAGAAGCAAATTCATTCAC 57.861 36.000 0.00 0.00 40.67 3.18
5010 6516 7.935520 TGTTATTTGTATGCAAGAACACAGAA 58.064 30.769 16.69 0.00 37.35 3.02
5053 7105 3.127721 GGCAAGGATGAAGACAAGCTTAC 59.872 47.826 0.00 0.00 36.83 2.34
5098 7150 3.879998 TCAAGTACACTGTGCCTTTTCA 58.120 40.909 7.90 0.00 0.00 2.69
5099 7151 4.893424 TTCAAGTACACTGTGCCTTTTC 57.107 40.909 7.90 0.00 0.00 2.29
5100 7152 5.852282 ATTTCAAGTACACTGTGCCTTTT 57.148 34.783 7.90 0.00 0.00 2.27
5237 7307 6.655848 ACTCGTCTCTTAGTTAGTCACTTGAT 59.344 38.462 0.00 0.00 36.88 2.57
5317 7387 2.772568 TTGACTGGCATGAAACAACG 57.227 45.000 0.00 0.00 0.00 4.10
5515 7601 2.948979 CCAGCAACAAGTCCAACAACTA 59.051 45.455 0.00 0.00 0.00 2.24
5516 7602 1.750778 CCAGCAACAAGTCCAACAACT 59.249 47.619 0.00 0.00 0.00 3.16
5517 7603 1.748493 TCCAGCAACAAGTCCAACAAC 59.252 47.619 0.00 0.00 0.00 3.32
5714 7800 5.168569 GTCACGGTATGAGAAATTGAGTCA 58.831 41.667 0.00 0.00 38.28 3.41
5755 7841 8.519799 AAAACAATATTCCCAGAATACGTCAT 57.480 30.769 0.00 0.00 0.00 3.06
5756 7842 7.931578 AAAACAATATTCCCAGAATACGTCA 57.068 32.000 0.00 0.00 0.00 4.35
5843 7930 2.090210 TGGCCTCCATCCTATTCCTACA 60.090 50.000 3.32 0.00 0.00 2.74
5918 8005 1.600636 CTGGCTTTCTGGCGTTCCA 60.601 57.895 0.00 0.00 45.14 3.53
5976 8063 2.912025 CACAGCCGGTTGCCCTTT 60.912 61.111 19.28 0.00 42.71 3.11
6030 8117 6.576444 CGTGTTTACGTGTAACAATGATTG 57.424 37.500 16.46 3.16 44.99 2.67
6047 8134 1.452145 GGTGCATGTGGTCCGTGTTT 61.452 55.000 0.00 0.00 32.30 2.83
6698 8787 2.524440 TGGTCTATCTGAGGGGGAATCT 59.476 50.000 0.00 0.00 0.00 2.40
6699 8788 2.903135 CTGGTCTATCTGAGGGGGAATC 59.097 54.545 0.00 0.00 0.00 2.52
6750 8839 8.781196 GCACTATCCTATCATTGGCAATATATG 58.219 37.037 13.23 1.96 0.00 1.78
6751 8840 8.721479 AGCACTATCCTATCATTGGCAATATAT 58.279 33.333 13.23 11.78 0.00 0.86
6752 8841 8.094284 AGCACTATCCTATCATTGGCAATATA 57.906 34.615 13.23 10.01 0.00 0.86
6753 8842 6.966751 AGCACTATCCTATCATTGGCAATAT 58.033 36.000 13.23 9.42 0.00 1.28
6754 8843 6.378661 AGCACTATCCTATCATTGGCAATA 57.621 37.500 13.23 2.26 0.00 1.90
6755 8844 5.252586 AGCACTATCCTATCATTGGCAAT 57.747 39.130 6.96 6.96 0.00 3.56
6756 8845 4.712051 AGCACTATCCTATCATTGGCAA 57.288 40.909 0.68 0.68 0.00 4.52
6757 8846 4.712051 AAGCACTATCCTATCATTGGCA 57.288 40.909 0.00 0.00 0.00 4.92
6758 8847 5.312079 AGAAAGCACTATCCTATCATTGGC 58.688 41.667 0.00 0.00 0.00 4.52
6759 8848 6.528321 TGAGAAAGCACTATCCTATCATTGG 58.472 40.000 0.00 0.00 0.00 3.16
6760 8849 7.361031 GCATGAGAAAGCACTATCCTATCATTG 60.361 40.741 0.00 0.00 0.00 2.82
6761 8850 6.654161 GCATGAGAAAGCACTATCCTATCATT 59.346 38.462 0.00 0.00 0.00 2.57
6762 8851 6.171921 GCATGAGAAAGCACTATCCTATCAT 58.828 40.000 0.00 0.00 0.00 2.45
6763 8852 5.070847 TGCATGAGAAAGCACTATCCTATCA 59.929 40.000 0.00 0.00 35.51 2.15
6764 8853 5.545588 TGCATGAGAAAGCACTATCCTATC 58.454 41.667 0.00 0.00 35.51 2.08
6765 8854 5.557576 TGCATGAGAAAGCACTATCCTAT 57.442 39.130 0.00 0.00 35.51 2.57
6766 8855 5.557576 ATGCATGAGAAAGCACTATCCTA 57.442 39.130 0.00 0.00 44.49 2.94
6767 8856 3.920231 TGCATGAGAAAGCACTATCCT 57.080 42.857 0.00 0.00 35.51 3.24
6768 8857 4.577693 TGAATGCATGAGAAAGCACTATCC 59.422 41.667 0.00 0.00 44.49 2.59
6769 8858 5.296283 AGTGAATGCATGAGAAAGCACTATC 59.704 40.000 0.00 0.00 44.49 2.08
6770 8859 5.191426 AGTGAATGCATGAGAAAGCACTAT 58.809 37.500 0.00 0.00 44.49 2.12
6771 8860 4.582869 AGTGAATGCATGAGAAAGCACTA 58.417 39.130 0.00 0.00 44.49 2.74
6772 8861 3.418995 AGTGAATGCATGAGAAAGCACT 58.581 40.909 0.00 3.22 44.49 4.40
6773 8862 3.844577 AGTGAATGCATGAGAAAGCAC 57.155 42.857 0.00 0.89 44.49 4.40
6774 8863 4.521639 AGAAAGTGAATGCATGAGAAAGCA 59.478 37.500 0.00 0.00 45.92 3.91
6775 8864 5.056894 AGAAAGTGAATGCATGAGAAAGC 57.943 39.130 0.00 0.00 0.00 3.51
6776 8865 6.148976 TCAGAGAAAGTGAATGCATGAGAAAG 59.851 38.462 0.00 0.00 0.00 2.62
6777 8866 5.999600 TCAGAGAAAGTGAATGCATGAGAAA 59.000 36.000 0.00 0.00 0.00 2.52
6778 8867 5.554070 TCAGAGAAAGTGAATGCATGAGAA 58.446 37.500 0.00 0.00 0.00 2.87
7024 9124 9.416794 CATAAGGTACAAAATTGTGCAAATGTA 57.583 29.630 14.76 0.00 44.20 2.29
7026 9126 8.222433 CACATAAGGTACAAAATTGTGCAAATG 58.778 33.333 14.76 14.80 44.20 2.32
7349 9462 1.393603 ATCGATCGAGAGCAAGGACA 58.606 50.000 23.84 0.00 0.00 4.02
7415 9529 5.931294 AGAGGTCGATATGTAGAGAAGTCA 58.069 41.667 0.00 0.00 0.00 3.41
7442 9556 4.270566 CAGAAGCAGAGGAAATCTTGATCG 59.729 45.833 0.00 0.00 35.47 3.69
7469 9583 0.957395 ACAGCCATCGCTTGGTCTTG 60.957 55.000 6.16 5.47 45.55 3.02
7488 9602 0.104672 TCCACCAGGGTCAAAGGAGA 60.105 55.000 0.00 0.00 38.11 3.71
7495 9609 0.984230 GATGAGTTCCACCAGGGTCA 59.016 55.000 0.00 0.00 38.11 4.02
7543 9657 2.253452 GGCGCATCGATCCAATGC 59.747 61.111 10.83 14.76 44.81 3.56
7577 9691 3.318384 TGGCTGCCCAGTAGCGAA 61.318 61.111 17.53 0.00 42.02 4.70
7628 9742 0.961019 GCCAATGAAGAACACAGGCA 59.039 50.000 0.00 0.00 45.28 4.75
7672 9786 4.479993 GAGATGGCGGCACTGGCT 62.480 66.667 16.34 9.63 40.87 4.75
7673 9787 4.479993 AGAGATGGCGGCACTGGC 62.480 66.667 16.34 4.16 40.13 4.85
7674 9788 2.202987 GAGAGATGGCGGCACTGG 60.203 66.667 16.34 0.00 0.00 4.00
7676 9790 0.470833 ATAGGAGAGATGGCGGCACT 60.471 55.000 16.34 13.98 0.00 4.40
7677 9791 0.394565 AATAGGAGAGATGGCGGCAC 59.605 55.000 16.34 8.74 0.00 5.01
7716 9852 2.637383 GGGAGGCAACGACTCGAGT 61.637 63.158 20.18 20.18 38.87 4.18
7720 9856 1.374758 CAGTGGGAGGCAACGACTC 60.375 63.158 0.00 0.00 46.39 3.36
7803 9939 0.337773 AGGCTCTGACAGATGGGAGA 59.662 55.000 5.42 0.00 0.00 3.71
7806 9942 0.179089 CGAAGGCTCTGACAGATGGG 60.179 60.000 5.42 0.00 0.00 4.00
7898 10034 1.739562 GCACTGCAGGAGGAGAACG 60.740 63.158 19.93 0.00 36.58 3.95
7918 10054 0.032678 AGAAGCAGAGACACACACGG 59.967 55.000 0.00 0.00 0.00 4.94
7920 10056 1.262683 GCAAGAAGCAGAGACACACAC 59.737 52.381 0.00 0.00 44.79 3.82
7941 10078 4.105553 TAGCAGCAGCAGGCCCAG 62.106 66.667 3.17 0.00 46.50 4.45
7955 10092 1.196012 AGGCTGGACCAAGTAGTAGC 58.804 55.000 0.00 0.00 43.14 3.58
7959 10096 3.100671 ACTAGAAGGCTGGACCAAGTAG 58.899 50.000 0.00 0.00 43.14 2.57
8031 10168 1.673665 AAGCAGCACACTAGCAGCC 60.674 57.895 0.00 0.00 46.72 4.85
8074 10211 3.356814 GCCTTGGAAAGTAAGGGCA 57.643 52.632 5.97 0.00 44.25 5.36
8186 10323 7.727578 TCTACATGTAGTTGTATTTCCCTCA 57.272 36.000 27.83 5.11 34.84 3.86
8277 10416 5.067283 TCGCAGCTAACTATCATTGACTACA 59.933 40.000 0.00 0.00 0.00 2.74
8384 10537 7.404671 AGGTAAAAACATGAAGAACACAAGT 57.595 32.000 0.00 0.00 0.00 3.16
8413 10566 5.003804 ACAGAAGGTAAACATAAGCTGTGG 58.996 41.667 0.00 0.00 38.39 4.17
8512 10665 1.194547 CAACGTCAATCAGAACACCCG 59.805 52.381 0.00 0.00 0.00 5.28
8765 10918 1.227853 ACACGACCAAGCTGGAACC 60.228 57.895 8.91 0.00 40.96 3.62
8786 10939 3.836365 TCTGATTGACACCTCAACACA 57.164 42.857 0.00 0.00 39.28 3.72
8891 11044 4.453478 ACTGCACATTATTGACACACTCAG 59.547 41.667 0.00 0.00 0.00 3.35
8998 11151 7.642669 CACATTATTGACAGACCAATATCCAC 58.357 38.462 0.00 0.00 38.40 4.02
9352 11505 8.889717 GTTCTAATCCCGTAATCATCAAAGAAA 58.110 33.333 0.00 0.00 0.00 2.52
9355 11508 6.479001 ACGTTCTAATCCCGTAATCATCAAAG 59.521 38.462 0.00 0.00 32.22 2.77
9356 11509 6.342906 ACGTTCTAATCCCGTAATCATCAAA 58.657 36.000 0.00 0.00 32.22 2.69
9357 11510 5.909477 ACGTTCTAATCCCGTAATCATCAA 58.091 37.500 0.00 0.00 32.22 2.57
9358 11511 5.508489 GGACGTTCTAATCCCGTAATCATCA 60.508 44.000 0.00 0.00 34.51 3.07
9359 11512 4.922103 GGACGTTCTAATCCCGTAATCATC 59.078 45.833 0.00 0.00 34.51 2.92
9360 11513 4.262335 GGGACGTTCTAATCCCGTAATCAT 60.262 45.833 0.00 0.00 45.26 2.45
9361 11514 3.068590 GGGACGTTCTAATCCCGTAATCA 59.931 47.826 0.00 0.00 45.26 2.57
9378 11531 1.765230 ACTTGACTAGCTAGGGGACG 58.235 55.000 24.35 10.90 0.00 4.79
9393 11546 6.348050 GCAGAACCACTTCTTCTCAATACTTG 60.348 42.308 0.00 0.00 34.20 3.16
9402 11555 5.189180 GGAATATGCAGAACCACTTCTTCT 58.811 41.667 0.00 0.00 34.20 2.85
9403 11556 4.034510 CGGAATATGCAGAACCACTTCTTC 59.965 45.833 8.28 0.00 34.20 2.87
9404 11557 3.941483 CGGAATATGCAGAACCACTTCTT 59.059 43.478 8.28 0.00 34.20 2.52
9422 11575 5.929992 CAGAGTTAAATAACAGGTCACGGAA 59.070 40.000 6.13 0.00 38.62 4.30
9424 11577 5.475719 TCAGAGTTAAATAACAGGTCACGG 58.524 41.667 6.13 0.00 38.62 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.