Multiple sequence alignment - TraesCS6B01G264500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G264500 chr6B 100.000 2726 0 0 1 2726 476111993 476109268 0.000000e+00 5035
1 TraesCS6B01G264500 chr6D 93.788 2125 88 25 1 2115 308881010 308878920 0.000000e+00 3153
2 TraesCS6B01G264500 chr6D 91.642 335 26 2 2222 2555 308878919 308878586 1.910000e-126 462
3 TraesCS6B01G264500 chr6D 86.391 169 21 2 2559 2726 60548997 60548830 1.670000e-42 183
4 TraesCS6B01G264500 chr6A 93.330 1859 91 19 48 1877 445580369 445582223 0.000000e+00 2715
5 TraesCS6B01G264500 chr6A 85.989 364 24 7 2219 2555 445582397 445582760 5.550000e-97 364
6 TraesCS6B01G264500 chr3D 86.628 172 23 0 2555 2726 196245589 196245418 9.960000e-45 191
7 TraesCS6B01G264500 chr4D 87.500 160 20 0 2567 2726 319815887 319816046 4.640000e-43 185
8 TraesCS6B01G264500 chr7D 85.465 172 25 0 2555 2726 481276722 481276893 2.160000e-41 180
9 TraesCS6B01G264500 chr7B 84.530 181 27 1 2546 2726 379713996 379713817 7.760000e-41 178
10 TraesCS6B01G264500 chr7B 84.884 172 25 1 2555 2726 98632603 98632433 3.610000e-39 172
11 TraesCS6B01G264500 chr4B 84.571 175 27 0 2552 2726 90094269 90094443 1.000000e-39 174
12 TraesCS6B01G264500 chr2D 84.270 178 26 2 2551 2726 256974346 256974169 3.610000e-39 172
13 TraesCS6B01G264500 chr2D 77.376 221 39 7 1078 1288 473275995 473276214 1.330000e-23 121
14 TraesCS6B01G264500 chr7A 84.181 177 27 1 2550 2726 384044861 384045036 1.300000e-38 171
15 TraesCS6B01G264500 chr2B 78.571 280 44 12 1078 1346 553613204 553613478 1.300000e-38 171
16 TraesCS6B01G264500 chr1A 92.500 120 8 1 2113 2231 148610332 148610451 1.300000e-38 171
17 TraesCS6B01G264500 chr1A 86.765 136 15 3 2107 2239 442161313 442161448 6.080000e-32 148
18 TraesCS6B01G264500 chr5A 92.373 118 7 2 2106 2221 299272892 299273009 1.680000e-37 167
19 TraesCS6B01G264500 chr5A 88.976 127 12 2 2103 2228 40763169 40763294 3.630000e-34 156
20 TraesCS6B01G264500 chr2A 94.444 108 6 0 2113 2220 39407509 39407402 1.680000e-37 167
21 TraesCS6B01G264500 chr5B 91.667 120 8 2 2110 2227 687221578 687221459 6.040000e-37 165
22 TraesCS6B01G264500 chr5B 93.578 109 7 0 2112 2220 383646800 383646692 2.170000e-36 163
23 TraesCS6B01G264500 chr5B 93.578 109 7 0 2112 2220 649981474 649981366 2.170000e-36 163
24 TraesCS6B01G264500 chr5B 91.597 119 9 1 2110 2227 712439236 712439354 2.170000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G264500 chr6B 476109268 476111993 2725 True 5035.0 5035 100.0000 1 2726 1 chr6B.!!$R1 2725
1 TraesCS6B01G264500 chr6D 308878586 308881010 2424 True 1807.5 3153 92.7150 1 2555 2 chr6D.!!$R2 2554
2 TraesCS6B01G264500 chr6A 445580369 445582760 2391 False 1539.5 2715 89.6595 48 2555 2 chr6A.!!$F1 2507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 853 0.107643 GCCCTGCTCTAGTGGGATTC 59.892 60.0 13.99 0.0 43.47 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2584 2646 0.110104 TGGCACACACACCATCATCA 59.89 50.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 218 6.658831 TCAGTCTCTGAAAAATGTTAAAGCG 58.341 36.000 0.00 0.00 37.57 4.68
254 262 8.404000 CCCTTTCAGCAATATCATTATGATAGC 58.596 37.037 18.22 16.32 42.04 2.97
379 387 1.906574 TCTGGCGACCTTATCCAAAGT 59.093 47.619 0.00 0.00 0.00 2.66
420 428 2.532973 CGCACGTTAATTCGCTTGAGAG 60.533 50.000 0.00 0.00 0.00 3.20
472 480 9.780186 ATTAGAGAAAAGGCTTATGTGGTATAC 57.220 33.333 0.00 0.00 0.00 1.47
503 514 8.668510 AGTATAAATAATGACACAAGAGGCAG 57.331 34.615 0.00 0.00 0.00 4.85
504 515 8.486210 AGTATAAATAATGACACAAGAGGCAGA 58.514 33.333 0.00 0.00 0.00 4.26
547 558 6.956299 AGTGCATTACGTAACGTTTTCTAT 57.044 33.333 10.81 0.00 41.54 1.98
548 559 6.986118 AGTGCATTACGTAACGTTTTCTATC 58.014 36.000 10.81 0.00 41.54 2.08
563 578 6.310711 CGTTTTCTATCCCTTGTCTGAAGTAC 59.689 42.308 0.00 0.00 0.00 2.73
594 609 0.834687 TGTTTAGCACGGGACCCTCT 60.835 55.000 9.41 5.54 0.00 3.69
635 651 5.293324 TGATTACGACACAACAATATCCTGC 59.707 40.000 0.00 0.00 0.00 4.85
778 795 2.801996 CGCGCCACAAATGTGCAG 60.802 61.111 0.00 5.29 44.34 4.41
813 831 0.458025 CCGTCCCTCTCGTTAGTTGC 60.458 60.000 0.00 0.00 0.00 4.17
825 847 2.622436 GTTAGTTGCCCTGCTCTAGTG 58.378 52.381 0.00 0.00 0.00 2.74
831 853 0.107643 GCCCTGCTCTAGTGGGATTC 59.892 60.000 13.99 0.00 43.47 2.52
996 1023 2.717639 ACTGTTGAAGGTGCAAGAGT 57.282 45.000 0.00 0.00 44.53 3.24
1044 1071 0.394565 GGGATGATCCGTCCAAGAGG 59.605 60.000 5.22 0.00 41.05 3.69
1055 1082 4.785453 CAAGAGGGTGAGCGGGGC 62.785 72.222 0.00 0.00 0.00 5.80
1437 1467 3.060020 GCCGACTCGTTCATCCCGA 62.060 63.158 0.00 0.00 0.00 5.14
1471 1501 3.554692 CCGCGCAGTTCGACATCC 61.555 66.667 8.75 0.00 41.67 3.51
1485 1515 0.031010 ACATCCTGTACCCTCCTCCC 60.031 60.000 0.00 0.00 0.00 4.30
1490 1520 4.791069 GTACCCTCCTCCCGCCCA 62.791 72.222 0.00 0.00 0.00 5.36
1698 1728 8.190784 CAGTTATTGTTCTTCCTCTTTGTGTTT 58.809 33.333 0.00 0.00 0.00 2.83
1748 1778 3.786101 CGGAGGACATTCGTGCAG 58.214 61.111 0.00 0.00 35.57 4.41
1782 1814 5.840243 ATAGCGTGTGGTGTACATAGTAA 57.160 39.130 0.00 0.00 42.24 2.24
1785 1817 5.484715 AGCGTGTGGTGTACATAGTAAAAT 58.515 37.500 0.00 0.00 42.24 1.82
1818 1851 6.707290 AGGTCATGTGTTAGCACTATTAACA 58.293 36.000 11.22 0.00 45.44 2.41
1863 1896 4.061596 TGTGACAAGTTGCGATCATACAA 58.938 39.130 1.81 0.00 0.00 2.41
1866 1899 4.627035 TGACAAGTTGCGATCATACAAGAG 59.373 41.667 1.81 0.00 0.00 2.85
1892 1925 3.825014 ACAACTCCTGTAGTGTCATACGT 59.175 43.478 0.00 0.00 38.88 3.57
1904 1937 2.422479 TGTCATACGTGCCTCAGTACTC 59.578 50.000 0.00 0.00 0.00 2.59
1921 1954 2.232298 CTCACAGGAACCGAGGGAGC 62.232 65.000 5.88 0.00 0.00 4.70
1923 1956 3.787001 CAGGAACCGAGGGAGCCC 61.787 72.222 0.00 0.00 0.00 5.19
1966 1999 4.968553 ACGGAGTCCTTTCCTGGA 57.031 55.556 7.77 0.00 29.74 3.86
1987 2020 4.815846 GGAAAAACACAAAGGATGCATTGT 59.184 37.500 0.00 1.66 40.24 2.71
2046 2079 2.108568 GGCGGAGACAGACCTACTC 58.891 63.158 0.00 0.00 31.66 2.59
2087 2120 3.910627 CCCTAGGCCTAGTAACATTGGAT 59.089 47.826 33.00 0.00 0.00 3.41
2105 2138 9.492730 ACATTGGATTTTGTAATTCCTTCCTAT 57.507 29.630 0.00 0.00 0.00 2.57
2121 2154 8.912614 TCCTTCCTATAAAATATACTCCCTCC 57.087 38.462 0.00 0.00 0.00 4.30
2122 2155 7.618512 TCCTTCCTATAAAATATACTCCCTCCG 59.381 40.741 0.00 0.00 0.00 4.63
2123 2156 7.399478 CCTTCCTATAAAATATACTCCCTCCGT 59.601 40.741 0.00 0.00 0.00 4.69
2124 2157 8.731591 TTCCTATAAAATATACTCCCTCCGTT 57.268 34.615 0.00 0.00 0.00 4.44
2125 2158 8.358582 TCCTATAAAATATACTCCCTCCGTTC 57.641 38.462 0.00 0.00 0.00 3.95
2126 2159 7.951806 TCCTATAAAATATACTCCCTCCGTTCA 59.048 37.037 0.00 0.00 0.00 3.18
2127 2160 8.033626 CCTATAAAATATACTCCCTCCGTTCAC 58.966 40.741 0.00 0.00 0.00 3.18
2128 2161 5.952347 AAAATATACTCCCTCCGTTCACT 57.048 39.130 0.00 0.00 0.00 3.41
2129 2162 5.952347 AAATATACTCCCTCCGTTCACTT 57.048 39.130 0.00 0.00 0.00 3.16
2130 2163 5.952347 AATATACTCCCTCCGTTCACTTT 57.048 39.130 0.00 0.00 0.00 2.66
2131 2164 5.952347 ATATACTCCCTCCGTTCACTTTT 57.048 39.130 0.00 0.00 0.00 2.27
2132 2165 4.635699 ATACTCCCTCCGTTCACTTTTT 57.364 40.909 0.00 0.00 0.00 1.94
2153 2186 6.971527 TTTTAAGTCGTTTCAGACAACTCA 57.028 33.333 0.00 0.00 43.24 3.41
2154 2187 6.971527 TTTAAGTCGTTTCAGACAACTCAA 57.028 33.333 0.00 0.00 43.24 3.02
2155 2188 6.971527 TTAAGTCGTTTCAGACAACTCAAA 57.028 33.333 0.00 0.00 43.24 2.69
2156 2189 5.873179 AAGTCGTTTCAGACAACTCAAAA 57.127 34.783 0.00 0.00 43.24 2.44
2157 2190 6.436843 AAGTCGTTTCAGACAACTCAAAAT 57.563 33.333 0.00 0.00 43.24 1.82
2158 2191 5.810525 AGTCGTTTCAGACAACTCAAAATG 58.189 37.500 0.00 0.00 43.24 2.32
2159 2192 5.354234 AGTCGTTTCAGACAACTCAAAATGT 59.646 36.000 0.00 0.00 43.24 2.71
2160 2193 5.452302 GTCGTTTCAGACAACTCAAAATGTG 59.548 40.000 0.00 0.00 40.65 3.21
2161 2194 5.123186 TCGTTTCAGACAACTCAAAATGTGT 59.877 36.000 0.00 0.00 0.00 3.72
2162 2195 5.799936 CGTTTCAGACAACTCAAAATGTGTT 59.200 36.000 0.00 0.00 34.80 3.32
2170 2203 5.924786 CAACTCAAAATGTGTTGTTTTGCA 58.075 33.333 14.05 0.00 43.13 4.08
2171 2204 5.529014 ACTCAAAATGTGTTGTTTTGCAC 57.471 34.783 6.49 0.00 43.04 4.57
2178 2211 4.185467 TGTGTTGTTTTGCACATTGTCT 57.815 36.364 0.00 0.00 40.24 3.41
2179 2212 3.925299 TGTGTTGTTTTGCACATTGTCTG 59.075 39.130 0.00 0.00 40.24 3.51
2180 2213 4.172505 GTGTTGTTTTGCACATTGTCTGA 58.827 39.130 0.00 0.00 34.43 3.27
2181 2214 4.624882 GTGTTGTTTTGCACATTGTCTGAA 59.375 37.500 0.00 0.00 34.43 3.02
2182 2215 5.119898 GTGTTGTTTTGCACATTGTCTGAAA 59.880 36.000 0.00 0.00 34.43 2.69
2183 2216 5.873712 TGTTGTTTTGCACATTGTCTGAAAT 59.126 32.000 0.00 0.00 34.43 2.17
2184 2217 5.970140 TGTTTTGCACATTGTCTGAAATG 57.030 34.783 0.00 9.50 42.21 2.32
2186 2219 5.519566 TGTTTTGCACATTGTCTGAAATGTC 59.480 36.000 12.25 9.51 45.47 3.06
2187 2220 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
2188 2221 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
2189 2222 5.112220 TGCACATTGTCTGAAATGTCTTC 57.888 39.130 12.25 7.82 45.47 2.87
2190 2223 4.579753 TGCACATTGTCTGAAATGTCTTCA 59.420 37.500 12.25 9.40 45.47 3.02
2191 2224 5.067544 TGCACATTGTCTGAAATGTCTTCAA 59.932 36.000 12.25 0.00 45.47 2.69
2192 2225 5.628193 GCACATTGTCTGAAATGTCTTCAAG 59.372 40.000 12.25 5.42 45.47 3.02
2193 2226 6.513884 GCACATTGTCTGAAATGTCTTCAAGA 60.514 38.462 12.25 0.00 45.47 3.02
2194 2227 7.591165 CACATTGTCTGAAATGTCTTCAAGAT 58.409 34.615 12.25 0.00 45.47 2.40
2195 2228 8.080417 CACATTGTCTGAAATGTCTTCAAGATT 58.920 33.333 12.25 0.00 45.47 2.40
2196 2229 8.636213 ACATTGTCTGAAATGTCTTCAAGATTT 58.364 29.630 10.41 0.00 45.47 2.17
2197 2230 9.472361 CATTGTCTGAAATGTCTTCAAGATTTT 57.528 29.630 0.00 0.00 31.39 1.82
2263 2296 2.642807 TCAAACAAGCTTAGCCCTAGGT 59.357 45.455 8.29 0.00 0.00 3.08
2300 2333 0.318441 CCGCCACTGACTCTCAAGAA 59.682 55.000 0.00 0.00 0.00 2.52
2303 2336 3.070018 CGCCACTGACTCTCAAGAAATT 58.930 45.455 0.00 0.00 0.00 1.82
2411 2472 2.642254 ATCCGAAGTCGTTCCGGCA 61.642 57.895 0.00 0.00 37.74 5.69
2430 2492 2.550208 GCATGCCTATACCCGCTTAGTT 60.550 50.000 6.36 0.00 0.00 2.24
2449 2511 2.032681 GGGTTGGAGCGAGCACTT 59.967 61.111 0.00 0.00 0.00 3.16
2459 2521 2.758089 CGAGCACTTGCATCAGGCC 61.758 63.158 3.62 0.00 45.16 5.19
2475 2537 0.608035 GGCCTCACAAAATGGGACGA 60.608 55.000 0.00 0.00 0.00 4.20
2592 2654 5.410355 AAAAATGGAGTTGGTGATGATGG 57.590 39.130 0.00 0.00 0.00 3.51
2593 2655 3.744940 AATGGAGTTGGTGATGATGGT 57.255 42.857 0.00 0.00 0.00 3.55
2594 2656 2.495155 TGGAGTTGGTGATGATGGTG 57.505 50.000 0.00 0.00 0.00 4.17
2595 2657 1.704628 TGGAGTTGGTGATGATGGTGT 59.295 47.619 0.00 0.00 0.00 4.16
2596 2658 2.086869 GGAGTTGGTGATGATGGTGTG 58.913 52.381 0.00 0.00 0.00 3.82
2597 2659 2.553028 GGAGTTGGTGATGATGGTGTGT 60.553 50.000 0.00 0.00 0.00 3.72
2598 2660 2.485426 GAGTTGGTGATGATGGTGTGTG 59.515 50.000 0.00 0.00 0.00 3.82
2599 2661 2.158623 AGTTGGTGATGATGGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
2600 2662 1.894881 TGGTGATGATGGTGTGTGTG 58.105 50.000 0.00 0.00 0.00 3.82
2601 2663 0.523072 GGTGATGATGGTGTGTGTGC 59.477 55.000 0.00 0.00 0.00 4.57
2602 2664 0.523072 GTGATGATGGTGTGTGTGCC 59.477 55.000 0.00 0.00 0.00 5.01
2603 2665 0.110104 TGATGATGGTGTGTGTGCCA 59.890 50.000 0.00 0.00 39.33 4.92
2607 2669 3.751767 ATGGTGTGTGTGCCATCTT 57.248 47.368 0.00 0.00 41.24 2.40
2608 2670 1.250328 ATGGTGTGTGTGCCATCTTG 58.750 50.000 0.00 0.00 41.24 3.02
2609 2671 1.286880 GGTGTGTGTGCCATCTTGC 59.713 57.895 0.00 0.00 0.00 4.01
2610 2672 1.454572 GGTGTGTGTGCCATCTTGCA 61.455 55.000 0.00 0.00 39.37 4.08
2611 2673 0.385029 GTGTGTGTGCCATCTTGCAA 59.615 50.000 0.00 0.00 44.11 4.08
2612 2674 1.000060 GTGTGTGTGCCATCTTGCAAT 60.000 47.619 0.00 0.00 44.11 3.56
2613 2675 2.228582 GTGTGTGTGCCATCTTGCAATA 59.771 45.455 0.00 0.00 44.11 1.90
2614 2676 3.090790 TGTGTGTGCCATCTTGCAATAT 58.909 40.909 0.00 0.00 44.11 1.28
2615 2677 4.096231 GTGTGTGTGCCATCTTGCAATATA 59.904 41.667 0.00 0.00 44.11 0.86
2616 2678 4.704057 TGTGTGTGCCATCTTGCAATATAA 59.296 37.500 0.00 0.00 44.11 0.98
2617 2679 5.184671 TGTGTGTGCCATCTTGCAATATAAA 59.815 36.000 0.00 0.00 44.11 1.40
2618 2680 5.516339 GTGTGTGCCATCTTGCAATATAAAC 59.484 40.000 0.00 0.00 44.11 2.01
2619 2681 5.043248 GTGTGCCATCTTGCAATATAAACC 58.957 41.667 0.00 0.00 44.11 3.27
2620 2682 4.202000 TGTGCCATCTTGCAATATAAACCG 60.202 41.667 0.00 0.00 44.11 4.44
2621 2683 3.951037 TGCCATCTTGCAATATAAACCGT 59.049 39.130 0.00 0.00 38.56 4.83
2622 2684 4.036262 TGCCATCTTGCAATATAAACCGTC 59.964 41.667 0.00 0.00 38.56 4.79
2623 2685 4.275936 GCCATCTTGCAATATAAACCGTCT 59.724 41.667 0.00 0.00 0.00 4.18
2624 2686 5.751680 CCATCTTGCAATATAAACCGTCTG 58.248 41.667 0.00 0.00 0.00 3.51
2625 2687 5.527214 CCATCTTGCAATATAAACCGTCTGA 59.473 40.000 0.00 0.00 0.00 3.27
2626 2688 6.205464 CCATCTTGCAATATAAACCGTCTGAT 59.795 38.462 0.00 0.00 0.00 2.90
2627 2689 7.255242 CCATCTTGCAATATAAACCGTCTGATT 60.255 37.037 0.00 0.00 0.00 2.57
2628 2690 7.624360 TCTTGCAATATAAACCGTCTGATTT 57.376 32.000 0.00 0.00 0.00 2.17
2629 2691 8.725405 TCTTGCAATATAAACCGTCTGATTTA 57.275 30.769 0.00 0.00 0.00 1.40
2630 2692 9.337396 TCTTGCAATATAAACCGTCTGATTTAT 57.663 29.630 0.00 0.00 35.62 1.40
2653 2715 9.578576 TTATATCTGATGGATAAAAAGCAAGCT 57.421 29.630 0.00 0.00 39.94 3.74
2655 2717 9.750783 ATATCTGATGGATAAAAAGCAAGCTAT 57.249 29.630 0.00 0.00 39.94 2.97
2656 2718 7.268199 TCTGATGGATAAAAAGCAAGCTATG 57.732 36.000 0.00 0.00 0.00 2.23
2657 2719 7.523380 ATCTGATGGATAAAAAGCAAGCTATGC 60.523 37.037 11.48 11.48 43.42 3.14
2670 2732 5.359716 CAAGCTATGCCAATTTTGCAAAA 57.640 34.783 25.76 25.76 42.92 2.44
2671 2733 5.759963 CAAGCTATGCCAATTTTGCAAAAA 58.240 33.333 27.10 11.87 42.92 1.94
2672 2734 5.616488 AGCTATGCCAATTTTGCAAAAAG 57.384 34.783 27.10 21.07 42.92 2.27
2673 2735 5.307204 AGCTATGCCAATTTTGCAAAAAGA 58.693 33.333 27.10 6.60 42.92 2.52
2674 2736 5.941647 AGCTATGCCAATTTTGCAAAAAGAT 59.058 32.000 27.10 14.45 42.92 2.40
2675 2737 7.104939 AGCTATGCCAATTTTGCAAAAAGATA 58.895 30.769 27.10 16.25 42.92 1.98
2676 2738 7.064966 AGCTATGCCAATTTTGCAAAAAGATAC 59.935 33.333 27.10 16.03 42.92 2.24
2677 2739 5.938438 TGCCAATTTTGCAAAAAGATACC 57.062 34.783 27.10 14.08 35.40 2.73
2678 2740 4.759183 TGCCAATTTTGCAAAAAGATACCC 59.241 37.500 27.10 12.72 35.40 3.69
2679 2741 4.759183 GCCAATTTTGCAAAAAGATACCCA 59.241 37.500 27.10 2.70 0.00 4.51
2680 2742 5.334802 GCCAATTTTGCAAAAAGATACCCAC 60.335 40.000 27.10 7.69 0.00 4.61
2681 2743 5.762218 CCAATTTTGCAAAAAGATACCCACA 59.238 36.000 27.10 1.37 0.00 4.17
2682 2744 6.430616 CCAATTTTGCAAAAAGATACCCACAT 59.569 34.615 27.10 4.65 0.00 3.21
2683 2745 7.361116 CCAATTTTGCAAAAAGATACCCACATC 60.361 37.037 27.10 0.00 0.00 3.06
2684 2746 6.418057 TTTTGCAAAAAGATACCCACATCT 57.582 33.333 21.94 0.00 36.83 2.90
2685 2747 5.643379 TTGCAAAAAGATACCCACATCTC 57.357 39.130 0.00 0.00 34.08 2.75
2686 2748 4.922206 TGCAAAAAGATACCCACATCTCT 58.078 39.130 0.00 0.00 34.08 3.10
2687 2749 5.324409 TGCAAAAAGATACCCACATCTCTT 58.676 37.500 0.00 0.00 34.08 2.85
2688 2750 5.774690 TGCAAAAAGATACCCACATCTCTTT 59.225 36.000 0.00 0.00 39.08 2.52
2689 2751 6.267471 TGCAAAAAGATACCCACATCTCTTTT 59.733 34.615 3.89 3.89 45.20 2.27
2690 2752 6.808704 GCAAAAAGATACCCACATCTCTTTTC 59.191 38.462 8.95 0.00 43.50 2.29
2691 2753 7.523709 GCAAAAAGATACCCACATCTCTTTTCA 60.524 37.037 8.95 0.00 43.50 2.69
2692 2754 7.454260 AAAAGATACCCACATCTCTTTTCAC 57.546 36.000 3.89 0.00 41.63 3.18
2693 2755 5.762179 AGATACCCACATCTCTTTTCACA 57.238 39.130 0.00 0.00 28.83 3.58
2694 2756 6.319048 AGATACCCACATCTCTTTTCACAT 57.681 37.500 0.00 0.00 28.83 3.21
2695 2757 6.725364 AGATACCCACATCTCTTTTCACATT 58.275 36.000 0.00 0.00 28.83 2.71
2696 2758 7.177878 AGATACCCACATCTCTTTTCACATTT 58.822 34.615 0.00 0.00 28.83 2.32
2697 2759 5.458041 ACCCACATCTCTTTTCACATTTG 57.542 39.130 0.00 0.00 0.00 2.32
2698 2760 4.240096 CCCACATCTCTTTTCACATTTGC 58.760 43.478 0.00 0.00 0.00 3.68
2699 2761 4.240096 CCACATCTCTTTTCACATTTGCC 58.760 43.478 0.00 0.00 0.00 4.52
2700 2762 3.916172 CACATCTCTTTTCACATTTGCCG 59.084 43.478 0.00 0.00 0.00 5.69
2701 2763 3.820467 ACATCTCTTTTCACATTTGCCGA 59.180 39.130 0.00 0.00 0.00 5.54
2702 2764 4.460382 ACATCTCTTTTCACATTTGCCGAT 59.540 37.500 0.00 0.00 0.00 4.18
2703 2765 5.647658 ACATCTCTTTTCACATTTGCCGATA 59.352 36.000 0.00 0.00 0.00 2.92
2704 2766 6.150976 ACATCTCTTTTCACATTTGCCGATAA 59.849 34.615 0.00 0.00 0.00 1.75
2705 2767 6.182039 TCTCTTTTCACATTTGCCGATAAG 57.818 37.500 0.00 0.00 0.00 1.73
2706 2768 5.123820 TCTCTTTTCACATTTGCCGATAAGG 59.876 40.000 0.00 0.00 44.97 2.69
2719 2781 4.701956 CCGATAAGGCATTCACTTGTTT 57.298 40.909 0.00 0.00 0.00 2.83
2720 2782 5.811399 CCGATAAGGCATTCACTTGTTTA 57.189 39.130 0.00 0.00 0.00 2.01
2721 2783 6.377327 CCGATAAGGCATTCACTTGTTTAT 57.623 37.500 0.00 0.00 0.00 1.40
2722 2784 6.430451 CCGATAAGGCATTCACTTGTTTATC 58.570 40.000 0.00 0.00 0.00 1.75
2723 2785 6.430451 CGATAAGGCATTCACTTGTTTATCC 58.570 40.000 0.00 0.00 30.26 2.59
2724 2786 6.260936 CGATAAGGCATTCACTTGTTTATCCT 59.739 38.462 0.00 0.00 30.26 3.24
2725 2787 7.201732 CGATAAGGCATTCACTTGTTTATCCTT 60.202 37.037 0.00 0.00 35.75 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.170468 AGGTAATGGTTGATAGGCTTGG 57.830 45.455 0.00 0.00 0.00 3.61
234 241 8.188139 TGCAATGCTATCATAATGATATTGCTG 58.812 33.333 21.07 8.76 46.32 4.41
254 262 1.407979 GGCAGGAAGGAGAATGCAATG 59.592 52.381 0.00 0.00 40.46 2.82
379 387 3.215151 CGTCCTAGCTCCTAGACAATGA 58.785 50.000 0.00 0.00 36.26 2.57
420 428 2.504920 GGCATTTCCCTAACCTGCC 58.495 57.895 0.00 0.00 44.91 4.85
451 459 5.985911 ACGTATACCACATAAGCCTTTTCT 58.014 37.500 0.00 0.00 0.00 2.52
547 558 6.137104 ACTACTAGTACTTCAGACAAGGGA 57.863 41.667 0.00 0.00 0.00 4.20
548 559 7.319142 GTACTACTAGTACTTCAGACAAGGG 57.681 44.000 16.30 0.00 45.70 3.95
563 578 5.338365 CCGTGCTAAACAAGGTACTACTAG 58.662 45.833 0.00 0.00 42.45 2.57
594 609 6.071221 TCGTAATCAGTCTAGCCAAACCTAAA 60.071 38.462 0.00 0.00 0.00 1.85
635 651 1.259609 TGCTTGGCCCAGAGAATTTG 58.740 50.000 8.31 0.00 0.00 2.32
773 790 1.945662 CAAGCCACGCAAACTGCAC 60.946 57.895 0.00 0.00 45.36 4.57
778 795 2.050077 GGAGCAAGCCACGCAAAC 60.050 61.111 0.00 0.00 0.00 2.93
813 831 1.500474 TGAATCCCACTAGAGCAGGG 58.500 55.000 0.00 2.25 44.22 4.45
825 847 6.102663 CCGTAGTGAGATTATCATGAATCCC 58.897 44.000 0.00 0.00 40.92 3.85
831 853 7.653311 TGATCAAACCGTAGTGAGATTATCATG 59.347 37.037 0.00 0.00 40.92 3.07
996 1023 3.574396 CCTCGCTAACCTGATTCATCCTA 59.426 47.826 0.00 0.00 0.00 2.94
1023 1050 1.765314 CTCTTGGACGGATCATCCCTT 59.235 52.381 11.67 0.00 35.12 3.95
1370 1400 1.741770 CTACTGCCACCGCTGGTTC 60.742 63.158 0.00 0.00 40.17 3.62
1391 1421 4.735132 CCACGATCACACGCCGGT 62.735 66.667 1.90 0.00 36.70 5.28
1398 1428 3.780357 TCGGGTTCCACGATCACA 58.220 55.556 0.00 0.00 35.12 3.58
1405 1435 3.192922 CGGCGAATCGGGTTCCAC 61.193 66.667 0.00 0.00 33.04 4.02
1471 1501 3.155167 GGCGGGAGGAGGGTACAG 61.155 72.222 0.00 0.00 0.00 2.74
1490 1520 2.516930 CATTCATTCCGCGCCCCT 60.517 61.111 0.00 0.00 0.00 4.79
1698 1728 1.004560 GAGCAGGCACAGCACTACA 60.005 57.895 0.00 0.00 45.86 2.74
1736 1766 1.151668 ACAGAAGCTGCACGAATGTC 58.848 50.000 1.02 0.00 34.37 3.06
1748 1778 3.736252 CCACACGCTATATGTACAGAAGC 59.264 47.826 13.96 13.96 0.00 3.86
1782 1814 8.515414 GCTAACACATGACCTCTTTTAGAATTT 58.485 33.333 0.00 0.00 0.00 1.82
1785 1817 6.426937 GTGCTAACACATGACCTCTTTTAGAA 59.573 38.462 0.00 0.00 46.61 2.10
1818 1851 2.659428 GGCAGATAGGCTGGACATTTT 58.341 47.619 0.00 0.00 45.03 1.82
1863 1896 3.134804 ACACTACAGGAGTTGTTTGCTCT 59.865 43.478 0.00 0.00 41.29 4.09
1866 1899 3.202906 TGACACTACAGGAGTTGTTTGC 58.797 45.455 0.00 0.00 41.29 3.68
1892 1925 1.618837 GTTCCTGTGAGTACTGAGGCA 59.381 52.381 0.00 0.00 0.00 4.75
1904 1937 2.266055 GCTCCCTCGGTTCCTGTG 59.734 66.667 0.00 0.00 0.00 3.66
1934 1967 3.795877 ACTCCGTCGGTTTCAAGTAAAA 58.204 40.909 11.88 0.00 0.00 1.52
1935 1968 3.383761 GACTCCGTCGGTTTCAAGTAAA 58.616 45.455 11.88 0.00 0.00 2.01
1941 1974 0.754472 AAAGGACTCCGTCGGTTTCA 59.246 50.000 11.88 0.00 32.65 2.69
1966 1999 5.879223 TCAACAATGCATCCTTTGTGTTTTT 59.121 32.000 9.01 0.00 38.76 1.94
2015 2048 0.888619 CTCCGCCACTGTTGAGAGTA 59.111 55.000 0.00 0.00 0.00 2.59
2046 2079 3.833070 AGGGCTATACTCCCAACTATTCG 59.167 47.826 7.80 0.00 46.36 3.34
2105 2138 7.427989 AAGTGAACGGAGGGAGTATATTTTA 57.572 36.000 0.00 0.00 0.00 1.52
2136 2169 5.452302 CACATTTTGAGTTGTCTGAAACGAC 59.548 40.000 0.00 0.00 41.93 4.34
2137 2170 5.123186 ACACATTTTGAGTTGTCTGAAACGA 59.877 36.000 0.00 0.00 35.13 3.85
2138 2171 5.331902 ACACATTTTGAGTTGTCTGAAACG 58.668 37.500 0.00 0.00 35.13 3.60
2139 2172 6.981708 CAACACATTTTGAGTTGTCTGAAAC 58.018 36.000 8.92 0.00 41.73 2.78
2148 2181 5.468072 TGTGCAAAACAACACATTTTGAGTT 59.532 32.000 13.00 0.00 45.75 3.01
2149 2182 4.993584 TGTGCAAAACAACACATTTTGAGT 59.006 33.333 13.00 0.00 45.75 3.41
2150 2183 5.527511 TGTGCAAAACAACACATTTTGAG 57.472 34.783 13.00 0.00 45.75 3.02
2158 2191 4.172505 TCAGACAATGTGCAAAACAACAC 58.827 39.130 0.00 0.00 43.61 3.32
2159 2192 4.446994 TCAGACAATGTGCAAAACAACA 57.553 36.364 0.00 0.00 43.61 3.33
2160 2193 5.776519 TTTCAGACAATGTGCAAAACAAC 57.223 34.783 0.00 0.00 43.61 3.32
2161 2194 5.873712 ACATTTCAGACAATGTGCAAAACAA 59.126 32.000 0.00 0.00 44.19 2.83
2162 2195 5.417811 ACATTTCAGACAATGTGCAAAACA 58.582 33.333 0.00 0.00 44.19 2.83
2163 2196 5.750067 AGACATTTCAGACAATGTGCAAAAC 59.250 36.000 12.82 2.36 45.55 2.43
2164 2197 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
2165 2198 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
2166 2199 5.067544 TGAAGACATTTCAGACAATGTGCAA 59.932 36.000 12.82 0.00 45.55 4.08
2167 2200 4.579753 TGAAGACATTTCAGACAATGTGCA 59.420 37.500 12.82 0.00 45.55 4.57
2168 2201 5.112220 TGAAGACATTTCAGACAATGTGC 57.888 39.130 12.82 7.29 45.55 4.57
2169 2202 6.962686 TCTTGAAGACATTTCAGACAATGTG 58.037 36.000 12.82 2.50 45.55 3.21
2171 2204 9.472361 AAAATCTTGAAGACATTTCAGACAATG 57.528 29.630 0.00 0.00 39.67 2.82
2196 2229 9.967451 TCATACTCCCAATGTTCACTTTTATAA 57.033 29.630 0.00 0.00 0.00 0.98
2197 2230 9.967451 TTCATACTCCCAATGTTCACTTTTATA 57.033 29.630 0.00 0.00 0.00 0.98
2198 2231 8.877864 TTCATACTCCCAATGTTCACTTTTAT 57.122 30.769 0.00 0.00 0.00 1.40
2199 2232 8.698973 TTTCATACTCCCAATGTTCACTTTTA 57.301 30.769 0.00 0.00 0.00 1.52
2200 2233 7.595819 TTTCATACTCCCAATGTTCACTTTT 57.404 32.000 0.00 0.00 0.00 2.27
2201 2234 7.781324 ATTTCATACTCCCAATGTTCACTTT 57.219 32.000 0.00 0.00 0.00 2.66
2202 2235 8.739972 GTTATTTCATACTCCCAATGTTCACTT 58.260 33.333 0.00 0.00 0.00 3.16
2203 2236 8.109634 AGTTATTTCATACTCCCAATGTTCACT 58.890 33.333 0.00 0.00 0.00 3.41
2204 2237 8.281212 AGTTATTTCATACTCCCAATGTTCAC 57.719 34.615 0.00 0.00 0.00 3.18
2210 2243 9.726438 GCAGTATAGTTATTTCATACTCCCAAT 57.274 33.333 0.00 0.00 34.11 3.16
2211 2244 8.710239 TGCAGTATAGTTATTTCATACTCCCAA 58.290 33.333 0.00 0.00 34.11 4.12
2212 2245 8.257602 TGCAGTATAGTTATTTCATACTCCCA 57.742 34.615 0.00 0.00 34.11 4.37
2213 2246 9.372369 GATGCAGTATAGTTATTTCATACTCCC 57.628 37.037 0.00 0.00 34.11 4.30
2214 2247 9.929180 TGATGCAGTATAGTTATTTCATACTCC 57.071 33.333 0.00 0.00 34.11 3.85
2219 2252 9.836864 TTGAGTGATGCAGTATAGTTATTTCAT 57.163 29.630 0.00 0.00 0.00 2.57
2220 2253 9.665719 TTTGAGTGATGCAGTATAGTTATTTCA 57.334 29.630 0.00 0.00 0.00 2.69
2263 2296 4.763279 TGGCGGAGATAGTATCGAATTACA 59.237 41.667 4.48 0.00 0.00 2.41
2300 2333 6.524734 TCAAGTACATGAGTGTGAGTCAATT 58.475 36.000 0.00 0.00 39.39 2.32
2303 2336 5.163457 TGTTCAAGTACATGAGTGTGAGTCA 60.163 40.000 0.00 0.00 39.39 3.41
2411 2472 2.029290 CGAACTAAGCGGGTATAGGCAT 60.029 50.000 0.00 0.00 0.00 4.40
2430 2492 4.373116 GTGCTCGCTCCAACCCGA 62.373 66.667 0.00 0.00 0.00 5.14
2449 2511 1.546923 CATTTTGTGAGGCCTGATGCA 59.453 47.619 12.00 0.00 43.89 3.96
2459 2521 2.185004 AGGTCGTCCCATTTTGTGAG 57.815 50.000 0.00 0.00 34.66 3.51
2570 2632 4.840115 ACCATCATCACCAACTCCATTTTT 59.160 37.500 0.00 0.00 0.00 1.94
2571 2633 4.221262 CACCATCATCACCAACTCCATTTT 59.779 41.667 0.00 0.00 0.00 1.82
2572 2634 3.765511 CACCATCATCACCAACTCCATTT 59.234 43.478 0.00 0.00 0.00 2.32
2573 2635 3.245371 ACACCATCATCACCAACTCCATT 60.245 43.478 0.00 0.00 0.00 3.16
2574 2636 2.309755 ACACCATCATCACCAACTCCAT 59.690 45.455 0.00 0.00 0.00 3.41
2575 2637 1.704628 ACACCATCATCACCAACTCCA 59.295 47.619 0.00 0.00 0.00 3.86
2576 2638 2.086869 CACACCATCATCACCAACTCC 58.913 52.381 0.00 0.00 0.00 3.85
2577 2639 2.485426 CACACACCATCATCACCAACTC 59.515 50.000 0.00 0.00 0.00 3.01
2578 2640 2.158623 ACACACACCATCATCACCAACT 60.159 45.455 0.00 0.00 0.00 3.16
2579 2641 2.030893 CACACACACCATCATCACCAAC 60.031 50.000 0.00 0.00 0.00 3.77
2580 2642 2.228925 CACACACACCATCATCACCAA 58.771 47.619 0.00 0.00 0.00 3.67
2581 2643 1.894881 CACACACACCATCATCACCA 58.105 50.000 0.00 0.00 0.00 4.17
2582 2644 0.523072 GCACACACACCATCATCACC 59.477 55.000 0.00 0.00 0.00 4.02
2583 2645 0.523072 GGCACACACACCATCATCAC 59.477 55.000 0.00 0.00 0.00 3.06
2584 2646 0.110104 TGGCACACACACCATCATCA 59.890 50.000 0.00 0.00 0.00 3.07
2585 2647 2.945510 TGGCACACACACCATCATC 58.054 52.632 0.00 0.00 0.00 2.92
2597 2659 4.202000 CGGTTTATATTGCAAGATGGCACA 60.202 41.667 16.68 0.00 44.86 4.57
2598 2660 4.202010 ACGGTTTATATTGCAAGATGGCAC 60.202 41.667 16.68 9.59 44.86 5.01
2599 2661 3.951037 ACGGTTTATATTGCAAGATGGCA 59.049 39.130 16.68 0.00 43.19 4.92
2600 2662 4.275936 AGACGGTTTATATTGCAAGATGGC 59.724 41.667 16.68 1.44 0.00 4.40
2601 2663 5.527214 TCAGACGGTTTATATTGCAAGATGG 59.473 40.000 16.68 3.62 0.00 3.51
2602 2664 6.603237 TCAGACGGTTTATATTGCAAGATG 57.397 37.500 16.68 1.97 0.00 2.90
2603 2665 7.807977 AATCAGACGGTTTATATTGCAAGAT 57.192 32.000 11.88 11.88 0.00 2.40
2604 2666 7.624360 AAATCAGACGGTTTATATTGCAAGA 57.376 32.000 4.94 0.00 0.00 3.02
2613 2675 9.658799 CCATCAGATATAAATCAGACGGTTTAT 57.341 33.333 0.00 0.00 29.21 1.40
2614 2676 8.866093 TCCATCAGATATAAATCAGACGGTTTA 58.134 33.333 0.00 0.00 33.89 2.01
2615 2677 7.735917 TCCATCAGATATAAATCAGACGGTTT 58.264 34.615 0.00 0.00 33.89 3.27
2616 2678 7.303182 TCCATCAGATATAAATCAGACGGTT 57.697 36.000 0.00 0.00 33.89 4.44
2617 2679 6.918067 TCCATCAGATATAAATCAGACGGT 57.082 37.500 0.00 0.00 33.89 4.83
2618 2680 9.875691 TTTATCCATCAGATATAAATCAGACGG 57.124 33.333 0.00 0.00 37.31 4.79
2627 2689 9.578576 AGCTTGCTTTTTATCCATCAGATATAA 57.421 29.630 0.00 0.00 37.31 0.98
2629 2691 9.750783 ATAGCTTGCTTTTTATCCATCAGATAT 57.249 29.630 0.00 0.00 37.31 1.63
2630 2692 9.006839 CATAGCTTGCTTTTTATCCATCAGATA 57.993 33.333 0.00 0.00 36.33 1.98
2631 2693 7.883217 CATAGCTTGCTTTTTATCCATCAGAT 58.117 34.615 0.00 0.00 39.15 2.90
2632 2694 7.268199 CATAGCTTGCTTTTTATCCATCAGA 57.732 36.000 0.00 0.00 0.00 3.27
2648 2710 5.359716 TTTTGCAAAATTGGCATAGCTTG 57.640 34.783 20.46 0.00 41.58 4.01
2649 2711 5.764192 TCTTTTTGCAAAATTGGCATAGCTT 59.236 32.000 24.39 0.00 41.58 3.74
2650 2712 5.307204 TCTTTTTGCAAAATTGGCATAGCT 58.693 33.333 24.39 0.00 41.58 3.32
2651 2713 5.610235 TCTTTTTGCAAAATTGGCATAGC 57.390 34.783 24.39 0.00 41.58 2.97
2652 2714 7.201635 GGGTATCTTTTTGCAAAATTGGCATAG 60.202 37.037 24.39 16.41 41.58 2.23
2653 2715 6.597280 GGGTATCTTTTTGCAAAATTGGCATA 59.403 34.615 24.39 12.99 41.58 3.14
2654 2716 5.415389 GGGTATCTTTTTGCAAAATTGGCAT 59.585 36.000 24.39 13.84 41.58 4.40
2655 2717 4.759183 GGGTATCTTTTTGCAAAATTGGCA 59.241 37.500 24.39 9.07 40.00 4.92
2656 2718 4.759183 TGGGTATCTTTTTGCAAAATTGGC 59.241 37.500 24.39 13.54 0.00 4.52
2657 2719 5.762218 TGTGGGTATCTTTTTGCAAAATTGG 59.238 36.000 24.39 16.79 0.00 3.16
2658 2720 6.857777 TGTGGGTATCTTTTTGCAAAATTG 57.142 33.333 24.39 19.07 0.00 2.32
2659 2721 7.452562 AGATGTGGGTATCTTTTTGCAAAATT 58.547 30.769 24.39 14.72 33.74 1.82
2660 2722 7.008021 AGATGTGGGTATCTTTTTGCAAAAT 57.992 32.000 24.39 12.94 33.74 1.82
2661 2723 6.267471 AGAGATGTGGGTATCTTTTTGCAAAA 59.733 34.615 20.46 20.46 37.53 2.44
2662 2724 5.774690 AGAGATGTGGGTATCTTTTTGCAAA 59.225 36.000 8.05 8.05 37.53 3.68
2663 2725 5.324409 AGAGATGTGGGTATCTTTTTGCAA 58.676 37.500 0.00 0.00 37.53 4.08
2664 2726 4.922206 AGAGATGTGGGTATCTTTTTGCA 58.078 39.130 0.00 0.00 37.53 4.08
2665 2727 5.904362 AAGAGATGTGGGTATCTTTTTGC 57.096 39.130 0.00 0.00 37.53 3.68
2666 2728 7.809806 GTGAAAAGAGATGTGGGTATCTTTTTG 59.190 37.037 11.72 0.00 44.86 2.44
2667 2729 7.505585 TGTGAAAAGAGATGTGGGTATCTTTTT 59.494 33.333 11.72 4.09 44.86 1.94
2668 2730 7.004086 TGTGAAAAGAGATGTGGGTATCTTTT 58.996 34.615 10.58 10.58 46.47 2.27
2669 2731 6.542821 TGTGAAAAGAGATGTGGGTATCTTT 58.457 36.000 0.00 0.00 40.32 2.52
2670 2732 6.126863 TGTGAAAAGAGATGTGGGTATCTT 57.873 37.500 0.00 0.00 37.53 2.40
2671 2733 5.762179 TGTGAAAAGAGATGTGGGTATCT 57.238 39.130 0.00 0.00 40.02 1.98
2672 2734 7.253422 CAAATGTGAAAAGAGATGTGGGTATC 58.747 38.462 0.00 0.00 0.00 2.24
2673 2735 6.350445 GCAAATGTGAAAAGAGATGTGGGTAT 60.350 38.462 0.00 0.00 0.00 2.73
2674 2736 5.048083 GCAAATGTGAAAAGAGATGTGGGTA 60.048 40.000 0.00 0.00 0.00 3.69
2675 2737 4.262164 GCAAATGTGAAAAGAGATGTGGGT 60.262 41.667 0.00 0.00 0.00 4.51
2676 2738 4.240096 GCAAATGTGAAAAGAGATGTGGG 58.760 43.478 0.00 0.00 0.00 4.61
2677 2739 4.240096 GGCAAATGTGAAAAGAGATGTGG 58.760 43.478 0.00 0.00 0.00 4.17
2678 2740 3.916172 CGGCAAATGTGAAAAGAGATGTG 59.084 43.478 0.00 0.00 0.00 3.21
2679 2741 3.820467 TCGGCAAATGTGAAAAGAGATGT 59.180 39.130 0.00 0.00 0.00 3.06
2680 2742 4.424061 TCGGCAAATGTGAAAAGAGATG 57.576 40.909 0.00 0.00 0.00 2.90
2681 2743 6.183360 CCTTATCGGCAAATGTGAAAAGAGAT 60.183 38.462 0.00 0.00 0.00 2.75
2682 2744 5.123820 CCTTATCGGCAAATGTGAAAAGAGA 59.876 40.000 0.00 0.00 0.00 3.10
2683 2745 5.335127 CCTTATCGGCAAATGTGAAAAGAG 58.665 41.667 0.00 0.00 0.00 2.85
2684 2746 5.309323 CCTTATCGGCAAATGTGAAAAGA 57.691 39.130 0.00 0.00 0.00 2.52
2698 2760 4.701956 AAACAAGTGAATGCCTTATCGG 57.298 40.909 0.00 0.00 0.00 4.18
2699 2761 6.260936 AGGATAAACAAGTGAATGCCTTATCG 59.739 38.462 0.00 0.00 33.45 2.92
2700 2762 7.573968 AGGATAAACAAGTGAATGCCTTATC 57.426 36.000 0.00 0.00 32.70 1.75
2701 2763 7.961326 AAGGATAAACAAGTGAATGCCTTAT 57.039 32.000 0.00 0.00 31.91 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.