Multiple sequence alignment - TraesCS6B01G263100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G263100
chr6B
100.000
5036
0
0
1
5036
474172211
474177246
0.000000e+00
9300
1
TraesCS6B01G263100
chr6A
94.134
5080
191
44
1
5036
442392086
442397102
0.000000e+00
7631
2
TraesCS6B01G263100
chr6D
90.427
2789
155
50
1
2746
306703098
306705817
0.000000e+00
3568
3
TraesCS6B01G263100
chr6D
93.277
1547
88
11
3494
5032
306707971
306709509
0.000000e+00
2266
4
TraesCS6B01G263100
chr6D
95.277
487
18
2
3016
3501
306707254
306707736
0.000000e+00
767
5
TraesCS6B01G263100
chr3D
90.909
165
15
0
3476
3640
479627066
479626902
6.560000e-54
222
6
TraesCS6B01G263100
chrUn
90.303
165
16
0
3479
3643
96474145
96473981
3.050000e-52
217
7
TraesCS6B01G263100
chr7B
90.361
166
15
1
3478
3643
428829536
428829372
3.050000e-52
217
8
TraesCS6B01G263100
chr7B
89.017
173
18
1
3471
3642
682239962
682239790
3.950000e-51
213
9
TraesCS6B01G263100
chr5D
90.741
162
15
0
3479
3640
529218327
529218166
3.050000e-52
217
10
TraesCS6B01G263100
chr2D
90.741
162
15
0
3479
3640
498473158
498472997
3.050000e-52
217
11
TraesCS6B01G263100
chr3A
90.123
162
16
0
3479
3640
500525141
500524980
1.420000e-50
211
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G263100
chr6B
474172211
474177246
5035
False
9300.000000
9300
100.000000
1
5036
1
chr6B.!!$F1
5035
1
TraesCS6B01G263100
chr6A
442392086
442397102
5016
False
7631.000000
7631
94.134000
1
5036
1
chr6A.!!$F1
5035
2
TraesCS6B01G263100
chr6D
306703098
306709509
6411
False
2200.333333
3568
92.993667
1
5032
3
chr6D.!!$F1
5031
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
364
381
0.033504
TTTCAGCTCCTCGGTGTGTC
59.966
55.000
0.00
0.00
41.76
3.67
F
1275
1323
0.321564
TGTTGACGGGATCCTGCTTG
60.322
55.000
21.17
3.88
0.00
4.01
F
1741
1800
1.676967
CTTCCTGCAGGCCAACTCC
60.677
63.158
28.91
0.00
34.44
3.85
F
2828
4196
0.244450
ATTGCTTGCGACCAATGGTG
59.756
50.000
10.84
3.38
35.25
4.17
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1345
1395
0.322008
GTGCCAGACCCTCCTGAAAG
60.322
60.0
0.00
0.0
36.29
2.62
R
2827
4195
0.965866
CTCACGTAGCTCCACCTCCA
60.966
60.0
0.00
0.0
0.00
3.86
R
3428
4798
0.035317
ATCTTGTGACGCAGAGGCAA
59.965
50.0
0.00
0.0
41.33
4.52
R
4444
6060
0.397957
GTTGTGGGTCCCCTTTTGGT
60.398
55.0
5.13
0.0
38.10
3.67
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
87
90
2.221799
CGTAGCACGTTGCCTTTAAC
57.778
50.000
6.39
0.00
46.52
2.01
101
104
5.165676
TGCCTTTAACTATACACGTCACAG
58.834
41.667
0.00
0.00
0.00
3.66
177
181
0.615331
TCAGCTCATCACCTCCAACC
59.385
55.000
0.00
0.00
0.00
3.77
194
198
1.229658
CCCCAAGACCAGGAGGACT
60.230
63.158
0.00
0.00
41.82
3.85
239
249
8.434589
TCTACTTCCCCAAATCAAATCAAATT
57.565
30.769
0.00
0.00
0.00
1.82
244
254
6.237154
TCCCCAAATCAAATCAAATTCCAAC
58.763
36.000
0.00
0.00
0.00
3.77
268
282
2.020720
CGAGAGCTCCTTCTAGAAGCA
58.979
52.381
24.58
11.45
37.11
3.91
293
310
2.766313
ACGTATCTTTGCTGCAAGACA
58.234
42.857
15.39
3.95
34.07
3.41
301
318
0.308684
TGCTGCAAGACAAAGAAGCG
59.691
50.000
0.00
0.00
34.07
4.68
340
357
9.150028
AGATTAAGGTACCTCTTATTTCTCTCC
57.850
37.037
16.64
0.00
0.00
3.71
364
381
0.033504
TTTCAGCTCCTCGGTGTGTC
59.966
55.000
0.00
0.00
41.76
3.67
370
401
1.248486
CTCCTCGGTGTGTCTTCAGA
58.752
55.000
0.00
0.00
0.00
3.27
389
420
2.558359
AGAAAACCCTTCCATTGCTTCG
59.442
45.455
0.00
0.00
0.00
3.79
459
493
3.045601
TGAGACCTAGCACTGCTTTTC
57.954
47.619
9.30
3.68
40.44
2.29
537
571
1.995376
ACCCCAACTTGACACCATTC
58.005
50.000
0.00
0.00
0.00
2.67
664
701
2.749621
CAGGAACAAGCGAGGCTAATTT
59.250
45.455
0.00
0.00
38.25
1.82
665
702
3.191371
CAGGAACAAGCGAGGCTAATTTT
59.809
43.478
0.00
0.00
38.25
1.82
698
735
3.819564
TCCGGTTCAGATTATCAGTGG
57.180
47.619
0.00
0.00
0.00
4.00
701
738
2.170607
CGGTTCAGATTATCAGTGGGGT
59.829
50.000
0.00
0.00
0.00
4.95
833
873
2.652590
GATCTCCATGCTTGCTTCCTT
58.347
47.619
0.00
0.00
0.00
3.36
844
884
0.884704
TGCTTCCTTGCCACTTCGTC
60.885
55.000
0.00
0.00
0.00
4.20
856
896
1.134901
CTTCGTCTCCTGGTCGTCG
59.865
63.158
0.00
0.00
0.00
5.12
924
964
5.515886
CCACAGGTTCCTTGGGATAAACTTA
60.516
44.000
10.23
0.00
0.00
2.24
933
973
7.475299
TCCTTGGGATAAACTTATTTCCTTGT
58.525
34.615
0.00
0.00
0.00
3.16
937
984
8.950007
TGGGATAAACTTATTTCCTTGTTCTT
57.050
30.769
0.00
0.00
0.00
2.52
998
1046
0.949397
CGTGCAGATAGGGTAGCGTA
59.051
55.000
0.00
0.00
0.00
4.42
1025
1073
2.106683
GTGGGGCGTCGAAATGGAG
61.107
63.158
0.00
0.00
0.00
3.86
1028
1076
2.513897
GGCGTCGAAATGGAGGGG
60.514
66.667
0.00
0.00
0.00
4.79
1062
1110
3.330720
CGGGGGAGGCCAAGAAGT
61.331
66.667
5.01
0.00
0.00
3.01
1089
1137
2.572284
GTGGTCGTCTTCCTCCCG
59.428
66.667
0.00
0.00
0.00
5.14
1095
1143
3.471806
GTCTTCCTCCCGGGGCTC
61.472
72.222
23.50
0.70
35.33
4.70
1096
1144
4.798682
TCTTCCTCCCGGGGCTCC
62.799
72.222
23.50
0.00
35.33
4.70
1134
1182
0.606944
ACTTCTCGCAGTCTCTCGGT
60.607
55.000
0.00
0.00
0.00
4.69
1170
1218
2.118513
ACGGTGGAGAGGCTGTCT
59.881
61.111
11.79
0.00
38.71
3.41
1171
1219
1.534235
ACGGTGGAGAGGCTGTCTT
60.534
57.895
11.79
0.00
34.71
3.01
1189
1237
3.057456
GTCTTCTCTAAGAGCAACGGTCA
60.057
47.826
0.00
0.00
42.40
4.02
1275
1323
0.321564
TGTTGACGGGATCCTGCTTG
60.322
55.000
21.17
3.88
0.00
4.01
1300
1348
3.006217
TGCTAGCCTGCTACATATGTGAG
59.994
47.826
18.81
12.12
0.00
3.51
1500
1550
7.446319
TGTTTTCTGACTGATTCATCATGAGTT
59.554
33.333
0.09
0.00
36.02
3.01
1514
1564
2.857186
TGAGTTATGTTGCAGGCAGA
57.143
45.000
0.00
0.00
0.00
4.26
1515
1565
3.138884
TGAGTTATGTTGCAGGCAGAA
57.861
42.857
0.00
0.00
0.00
3.02
1516
1566
2.813754
TGAGTTATGTTGCAGGCAGAAC
59.186
45.455
17.48
17.48
38.06
3.01
1517
1567
3.077359
GAGTTATGTTGCAGGCAGAACT
58.923
45.455
23.82
23.82
46.77
3.01
1518
1568
2.816087
AGTTATGTTGCAGGCAGAACTG
59.184
45.455
23.31
0.00
43.82
3.16
1519
1569
1.825090
TATGTTGCAGGCAGAACTGG
58.175
50.000
3.99
0.00
38.90
4.00
1625
1684
6.387192
TCAGAGATGATCCCTTGGTAAAAA
57.613
37.500
0.00
0.00
0.00
1.94
1741
1800
1.676967
CTTCCTGCAGGCCAACTCC
60.677
63.158
28.91
0.00
34.44
3.85
1750
1809
1.676967
GGCCAACTCCCTGCTTCTG
60.677
63.158
0.00
0.00
0.00
3.02
1768
1827
2.331805
CCGAGGTCATACGGCGAG
59.668
66.667
16.62
2.72
42.55
5.03
1797
1856
1.884067
GCCAAGGGTCTCTGAAGGTTG
60.884
57.143
0.00
0.00
0.00
3.77
1827
1886
6.570692
TCGGTACTTACATCTTGGATTCTTC
58.429
40.000
0.00
0.00
0.00
2.87
1887
1946
2.800544
ACTGCTAAGTGCTAACAACACG
59.199
45.455
0.00
0.00
42.94
4.49
2120
2181
3.566322
CACTCCCGGTAGATCTAGTTGAG
59.434
52.174
0.00
9.33
0.00
3.02
2170
2231
2.038557
GACTTGGCCAGGTACTCTTCAA
59.961
50.000
22.06
0.00
34.60
2.69
2249
2324
7.693969
ATTCTTAACCTCATCCAAAACTGAG
57.306
36.000
0.00
0.00
38.88
3.35
2498
2573
7.275920
TCTCAGATCTATTTTCAAGGGCTTAC
58.724
38.462
0.00
0.00
0.00
2.34
2547
2622
7.182361
TCTTTCGCATCATACTTCATCATTC
57.818
36.000
0.00
0.00
0.00
2.67
2549
2624
8.143835
TCTTTCGCATCATACTTCATCATTCTA
58.856
33.333
0.00
0.00
0.00
2.10
2572
2647
5.594724
TTTTTGCATTCAACAGCTATTGC
57.405
34.783
0.00
0.00
33.69
3.56
2576
2651
3.129113
TGCATTCAACAGCTATTGCGAAT
59.871
39.130
0.00
0.00
45.42
3.34
2679
2755
4.502645
GCGAAAAAGCACACACTATTTGTT
59.497
37.500
0.00
0.00
34.75
2.83
2731
2807
6.540914
GTGCATACCAGCTTACCACTATTTTA
59.459
38.462
0.00
0.00
34.99
1.52
2827
4195
1.832883
TATTGCTTGCGACCAATGGT
58.167
45.000
3.74
3.74
39.44
3.55
2828
4196
0.244450
ATTGCTTGCGACCAATGGTG
59.756
50.000
10.84
3.38
35.25
4.17
2903
4271
0.611714
GAACTAGGGCGTGAGGGAAA
59.388
55.000
0.00
0.00
0.00
3.13
2963
4332
1.279496
TTGTGCCTCTGCCACTAGAT
58.721
50.000
0.00
0.00
36.33
1.98
2988
4357
7.777095
TGCAACCTTACATATCCCATTTAAAC
58.223
34.615
0.00
0.00
0.00
2.01
3388
4758
2.952310
GGCGCAAGGAGGAAATAATTCT
59.048
45.455
10.83
0.00
34.96
2.40
3427
4797
9.956720
ATTTGAAAGCTATTGTTGCATAGTATC
57.043
29.630
0.00
0.00
0.00
2.24
3428
4798
8.737168
TTGAAAGCTATTGTTGCATAGTATCT
57.263
30.769
0.00
0.00
0.00
1.98
3429
4799
8.737168
TGAAAGCTATTGTTGCATAGTATCTT
57.263
30.769
0.00
0.00
0.00
2.40
3437
4807
3.117491
TGCATAGTATCTTGCCTCTGC
57.883
47.619
0.00
0.00
38.08
4.26
3550
5162
2.420022
ACATACGGAGCAAAATGAGTGC
59.580
45.455
0.00
0.00
42.55
4.40
3608
5220
8.135529
TGTATGTAGTCCGTATTGAAATCTCTG
58.864
37.037
0.00
0.00
0.00
3.35
3614
5227
7.386851
AGTCCGTATTGAAATCTCTGAAAAGA
58.613
34.615
0.00
0.00
0.00
2.52
3756
5369
4.524328
GGAACAACCAAACATCTCTTGGAT
59.476
41.667
8.54
0.00
45.31
3.41
3786
5399
5.415701
CCCAAAAGAGACATTAAGCAAGCTA
59.584
40.000
0.00
0.00
0.00
3.32
4004
5618
5.012893
GGAATATGAGCTTCCCCAATTAGG
58.987
45.833
0.00
0.00
36.89
2.69
4008
5622
1.828224
GCTTCCCCAATTAGGCCCG
60.828
63.158
0.00
0.00
35.39
6.13
4037
5651
7.490657
TGAAGAAGGAAGCTAACCACTAATA
57.509
36.000
11.59
0.95
0.00
0.98
4066
5680
2.185004
TACCAAGCTCAGGCAAGAAC
57.815
50.000
5.13
0.00
41.70
3.01
4116
5730
1.333619
TCCGCAGCTGAAAAAGAACAC
59.666
47.619
20.43
0.00
0.00
3.32
4375
5991
1.145598
CTCATCCGGTGCTGCTCAT
59.854
57.895
0.00
0.00
0.00
2.90
4678
6297
2.993545
TGAAGTGCACGCAAATAACAC
58.006
42.857
12.01
0.00
0.00
3.32
4721
6340
6.049955
AGAATTCTTCACGAAGGACCATAA
57.950
37.500
0.88
0.00
38.88
1.90
4722
6341
6.653989
AGAATTCTTCACGAAGGACCATAAT
58.346
36.000
0.88
0.00
38.88
1.28
4993
6614
8.547967
TGATTTGTAATCTCCTCAACAACTAC
57.452
34.615
0.00
0.00
31.92
2.73
4995
6616
9.167311
GATTTGTAATCTCCTCAACAACTACAT
57.833
33.333
0.00
0.00
31.92
2.29
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
87
90
8.912787
AAAATCTAGAACTGTGACGTGTATAG
57.087
34.615
0.00
0.00
0.00
1.31
101
104
7.387122
AGGGAAACGAGTTGTAAAATCTAGAAC
59.613
37.037
0.00
0.00
39.08
3.01
177
181
1.068121
AAAGTCCTCCTGGTCTTGGG
58.932
55.000
0.00
0.00
40.02
4.12
194
198
3.134081
AGAACTGGAGGAGAACGAACAAA
59.866
43.478
0.00
0.00
0.00
2.83
239
249
0.827925
AGGAGCTCTCGTGTGTTGGA
60.828
55.000
14.64
0.00
0.00
3.53
244
254
2.360844
TCTAGAAGGAGCTCTCGTGTG
58.639
52.381
14.64
1.04
0.00
3.82
268
282
5.749109
GTCTTGCAGCAAAGATACGTACTAT
59.251
40.000
9.65
0.00
38.41
2.12
293
310
1.965930
TCGCATGTGCCGCTTCTTT
60.966
52.632
0.00
0.00
37.91
2.52
301
318
2.223340
CCTTAATCTTGTCGCATGTGCC
60.223
50.000
0.00
0.00
37.91
5.01
340
357
1.470098
CACCGAGGAGCTGAAAATTGG
59.530
52.381
0.00
0.00
0.00
3.16
364
381
3.575687
AGCAATGGAAGGGTTTTCTGAAG
59.424
43.478
0.00
0.00
0.00
3.02
370
401
2.558359
CTCGAAGCAATGGAAGGGTTTT
59.442
45.455
0.00
0.00
0.00
2.43
389
420
1.518792
GCCCCGCTAGTTTCGTCTC
60.519
63.158
0.00
0.00
0.00
3.36
423
454
3.129502
CATGGTGCACGGAGCTGG
61.130
66.667
11.45
0.00
45.94
4.85
459
493
0.727970
AGTACTCGTACTGCTGCTCG
59.272
55.000
8.82
1.22
44.11
5.03
537
571
2.945008
ACAAAGCATATGACATGACGGG
59.055
45.455
6.97
0.00
0.00
5.28
785
822
2.315925
ACACGCACCCTGATTGATAG
57.684
50.000
0.00
0.00
0.00
2.08
786
823
2.779755
AACACGCACCCTGATTGATA
57.220
45.000
0.00
0.00
0.00
2.15
788
825
1.234821
GAAACACGCACCCTGATTGA
58.765
50.000
0.00
0.00
0.00
2.57
789
826
0.240945
GGAAACACGCACCCTGATTG
59.759
55.000
0.00
0.00
0.00
2.67
844
884
1.524863
AAGACACCGACGACCAGGAG
61.525
60.000
0.00
0.00
0.00
3.69
924
964
6.122277
TGTGAAGACTGAAGAACAAGGAAAT
58.878
36.000
0.00
0.00
0.00
2.17
933
973
3.118261
AGCTGGTTGTGAAGACTGAAGAA
60.118
43.478
0.00
0.00
0.00
2.52
937
984
1.762370
TCAGCTGGTTGTGAAGACTGA
59.238
47.619
15.13
0.00
0.00
3.41
998
1046
3.860930
GACGCCCCACAACCCATGT
62.861
63.158
0.00
0.00
45.34
3.21
1062
1110
4.608774
ACGACCACCTCCCCGACA
62.609
66.667
0.00
0.00
0.00
4.35
1089
1137
2.523657
CTAGGTACCCGGAGCCCC
60.524
72.222
8.74
0.00
0.00
5.80
1095
1143
0.536006
CTACGGTCCTAGGTACCCGG
60.536
65.000
28.28
10.00
44.57
5.73
1096
1144
0.469917
TCTACGGTCCTAGGTACCCG
59.530
60.000
25.41
25.41
45.72
5.28
1104
1152
1.065926
TGCGAGAAGTCTACGGTCCTA
60.066
52.381
0.00
0.00
0.00
2.94
1107
1155
0.803740
ACTGCGAGAAGTCTACGGTC
59.196
55.000
0.00
0.00
0.00
4.79
1134
1182
1.067565
GTGCTCTTGTCGAGGTGATCA
60.068
52.381
0.00
0.00
40.25
2.92
1170
1218
3.509967
TCATGACCGTTGCTCTTAGAGAA
59.490
43.478
14.14
0.00
0.00
2.87
1171
1219
3.089284
TCATGACCGTTGCTCTTAGAGA
58.911
45.455
14.14
0.00
0.00
3.10
1189
1237
1.855295
TCCTGCATTGCCATTGTCAT
58.145
45.000
6.12
0.00
0.00
3.06
1259
1307
2.989639
CCAAGCAGGATCCCGTCA
59.010
61.111
8.55
0.00
41.22
4.35
1262
1310
2.515523
CAGCCAAGCAGGATCCCG
60.516
66.667
8.55
0.00
41.22
5.14
1345
1395
0.322008
GTGCCAGACCCTCCTGAAAG
60.322
60.000
0.00
0.00
36.29
2.62
1392
1442
1.137872
CCTAGCAGAACTGGCAGGTAG
59.862
57.143
20.34
9.81
33.22
3.18
1456
1506
9.097257
CAGAAAACACCATCATAAAAACAAAGT
57.903
29.630
0.00
0.00
0.00
2.66
1500
1550
1.825090
CCAGTTCTGCCTGCAACATA
58.175
50.000
0.00
0.00
0.00
2.29
1514
1564
4.494484
GTTTCTCAAACAAACTGCCAGTT
58.506
39.130
3.74
3.74
40.80
3.16
1515
1565
4.110036
GTTTCTCAAACAAACTGCCAGT
57.890
40.909
0.00
0.00
41.04
4.00
1528
1578
5.132897
ACAAACTGCACTTTGTTTCTCAA
57.867
34.783
15.98
0.00
40.72
3.02
1640
1699
1.542915
CTCCTGCAACCAAACCATGAG
59.457
52.381
0.00
0.00
0.00
2.90
1672
1731
1.561076
AGCACCTCATACCAAGCATCA
59.439
47.619
0.00
0.00
0.00
3.07
1741
1800
2.125350
GACCTCGGCAGAAGCAGG
60.125
66.667
0.00
0.00
44.61
4.85
1780
1839
1.700186
GACCAACCTTCAGAGACCCTT
59.300
52.381
0.00
0.00
0.00
3.95
1786
1845
2.289694
ACCGAATGACCAACCTTCAGAG
60.290
50.000
0.00
0.00
0.00
3.35
1797
1856
4.809426
CCAAGATGTAAGTACCGAATGACC
59.191
45.833
0.00
0.00
0.00
4.02
2012
2073
9.553064
AGCTTCATAAACTGATATAACCAAGAG
57.447
33.333
0.00
0.00
32.72
2.85
2186
2247
8.816640
ATTTGTCCTTATACTTTGCAAAACAG
57.183
30.769
13.84
4.09
0.00
3.16
2249
2324
4.153117
CCAATGTGACAGAGTTGAAGTAGC
59.847
45.833
0.00
0.00
0.00
3.58
2498
2573
3.062763
GACCCATATGCTCATGACTTCG
58.937
50.000
0.00
0.00
0.00
3.79
2547
2622
7.396419
GCAATAGCTGTTGAATGCAAAAATAG
58.604
34.615
25.48
0.00
35.03
1.73
2549
2624
5.163933
CGCAATAGCTGTTGAATGCAAAAAT
60.164
36.000
25.48
0.00
39.10
1.82
2817
4184
1.377202
CCACCTCCACCATTGGTCG
60.377
63.158
5.04
0.00
44.35
4.79
2827
4195
0.965866
CTCACGTAGCTCCACCTCCA
60.966
60.000
0.00
0.00
0.00
3.86
2828
4196
1.668101
CCTCACGTAGCTCCACCTCC
61.668
65.000
0.00
0.00
0.00
4.30
2829
4197
1.668101
CCCTCACGTAGCTCCACCTC
61.668
65.000
0.00
0.00
0.00
3.85
2830
4198
1.682684
CCCTCACGTAGCTCCACCT
60.683
63.158
0.00
0.00
0.00
4.00
2831
4199
2.893398
CCCTCACGTAGCTCCACC
59.107
66.667
0.00
0.00
0.00
4.61
2832
4200
2.167398
TTGCCCTCACGTAGCTCCAC
62.167
60.000
0.00
0.00
0.00
4.02
2903
4271
3.897505
AGGCTAAGGTGAGCACAAATTTT
59.102
39.130
2.75
0.00
44.76
1.82
2906
4274
2.440409
CAGGCTAAGGTGAGCACAAAT
58.560
47.619
2.75
0.00
44.76
2.32
2963
4332
7.617723
AGTTTAAATGGGATATGTAAGGTTGCA
59.382
33.333
0.00
0.00
0.00
4.08
2988
4357
3.993081
GTGTGATCTGGTGAAGACTTCAG
59.007
47.826
18.24
7.31
41.01
3.02
3388
4758
3.614092
CTTTCAAATAGCAGGCTCCTCA
58.386
45.455
0.00
0.00
0.00
3.86
3426
4796
0.601046
CTTGTGACGCAGAGGCAAGA
60.601
55.000
0.00
0.00
41.33
3.02
3427
4797
0.601046
TCTTGTGACGCAGAGGCAAG
60.601
55.000
0.00
0.00
41.33
4.01
3428
4798
0.035317
ATCTTGTGACGCAGAGGCAA
59.965
50.000
0.00
0.00
41.33
4.52
3429
4799
0.671472
CATCTTGTGACGCAGAGGCA
60.671
55.000
0.00
0.00
41.24
4.75
3437
4807
0.110509
GCTGTGTGCATCTTGTGACG
60.111
55.000
0.00
0.00
42.31
4.35
3756
5369
7.345691
TGCTTAATGTCTCTTTTGGGATCATA
58.654
34.615
0.00
0.00
0.00
2.15
3786
5399
5.514310
GGTGTTAAGGTCCTGGTTATTCTGT
60.514
44.000
0.00
0.00
0.00
3.41
3835
5448
7.935405
AGGTAAATAATTGTCACCCCTTCTAA
58.065
34.615
3.25
0.00
0.00
2.10
3909
5523
4.732106
CGGCTGACTCCGGTATTC
57.268
61.111
0.00
0.00
45.38
1.75
4004
5618
0.889186
TTCCTTCTTCAACAGCGGGC
60.889
55.000
0.00
0.00
0.00
6.13
4008
5622
3.189495
GGTTAGCTTCCTTCTTCAACAGC
59.811
47.826
0.00
0.00
0.00
4.40
4037
5651
3.564225
CCTGAGCTTGGTAACGAAACTTT
59.436
43.478
0.00
0.00
42.51
2.66
4116
5730
6.145535
GTCCTCTAAAGTGTTGCAGAATTTG
58.854
40.000
4.12
0.00
0.00
2.32
4345
5961
4.336280
CACCGGATGAGAGGATATACTGA
58.664
47.826
9.46
0.00
0.00
3.41
4375
5991
7.122650
GGACTGAAATCCATCCTGTGATTTTAA
59.877
37.037
0.00
0.00
38.77
1.52
4444
6060
0.397957
GTTGTGGGTCCCCTTTTGGT
60.398
55.000
5.13
0.00
38.10
3.67
4575
6191
6.251163
CACCATGTTTCAAAATATGTACTGCG
59.749
38.462
10.18
0.00
36.23
5.18
4663
6282
2.376956
GAAACGTGTTATTTGCGTGCA
58.623
42.857
0.00
0.00
38.92
4.57
4928
6549
3.314307
TTCCTCATATGTCCGACCTCT
57.686
47.619
1.90
0.00
0.00
3.69
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.