Multiple sequence alignment - TraesCS6B01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G262700 chr6B 100.000 2309 0 0 1 2309 473060975 473063283 0.000000e+00 4265
1 TraesCS6B01G262700 chr6B 91.304 92 6 1 1511 1600 458503570 458503479 8.660000e-25 124
2 TraesCS6B01G262700 chr6D 95.520 759 26 4 757 1514 306135667 306136418 0.000000e+00 1206
3 TraesCS6B01G262700 chr6D 86.217 682 56 18 1 666 306135010 306135669 0.000000e+00 704
4 TraesCS6B01G262700 chr6D 94.408 304 16 1 1627 1929 306136722 306136419 1.250000e-127 466
5 TraesCS6B01G262700 chr6D 95.775 213 9 0 1740 1952 306136721 306136933 6.110000e-91 344
6 TraesCS6B01G262700 chr6D 88.983 118 9 3 664 777 88883032 88882915 2.390000e-30 143
7 TraesCS6B01G262700 chr6A 93.907 755 35 5 757 1509 441497625 441498370 0.000000e+00 1129
8 TraesCS6B01G262700 chr6A 86.409 699 52 22 1 666 441496939 441497627 0.000000e+00 725
9 TraesCS6B01G262700 chr6A 84.946 279 27 6 1679 1947 441498717 441498990 3.780000e-68 268
10 TraesCS6B01G262700 chr5B 97.191 356 10 0 1954 2309 477086498 477086853 9.130000e-169 603
11 TraesCS6B01G262700 chr7B 89.846 325 33 0 1985 2309 459596092 459596416 3.550000e-113 418
12 TraesCS6B01G262700 chr7B 94.175 103 4 1 664 764 745161106 745161004 3.070000e-34 156
13 TraesCS6B01G262700 chr3D 88.068 352 42 0 1954 2305 505938206 505938557 3.550000e-113 418
14 TraesCS6B01G262700 chr3D 92.222 90 5 1 1511 1598 22679146 22679057 2.410000e-25 126
15 TraesCS6B01G262700 chr3D 92.222 90 5 1 1511 1598 22767812 22767901 2.410000e-25 126
16 TraesCS6B01G262700 chr3A 86.648 352 47 0 1954 2305 87762865 87763216 7.730000e-105 390
17 TraesCS6B01G262700 chr2B 95.833 96 4 0 663 758 534844259 534844354 3.070000e-34 156
18 TraesCS6B01G262700 chr2B 94.118 102 4 1 661 760 403101607 403101708 1.100000e-33 154
19 TraesCS6B01G262700 chr1A 94.949 99 4 1 660 758 502679758 502679855 1.100000e-33 154
20 TraesCS6B01G262700 chr3B 91.228 114 7 2 664 774 490924558 490924671 3.970000e-33 152
21 TraesCS6B01G262700 chr1B 91.818 110 4 4 660 766 215844734 215844627 5.140000e-32 148
22 TraesCS6B01G262700 chr2D 87.805 123 12 2 663 783 629560767 629560646 8.600000e-30 141
23 TraesCS6B01G262700 chr4D 88.000 125 6 6 664 783 54799448 54799328 3.090000e-29 139
24 TraesCS6B01G262700 chr4D 90.526 95 7 1 1505 1597 423945406 423945312 8.660000e-25 124
25 TraesCS6B01G262700 chr4A 90.625 96 7 2 1505 1598 684976103 684976198 2.410000e-25 126
26 TraesCS6B01G262700 chr4A 91.304 92 6 1 1511 1600 9380761 9380670 8.660000e-25 124
27 TraesCS6B01G262700 chr7D 91.209 91 7 1 1509 1598 91813504 91813414 3.120000e-24 122
28 TraesCS6B01G262700 chr7D 90.323 93 6 2 1513 1602 218418389 218418297 4.030000e-23 119
29 TraesCS6B01G262700 chr5D 88.119 101 9 3 1504 1601 446918265 446918165 1.450000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G262700 chr6B 473060975 473063283 2308 False 4265.000000 4265 100.000000 1 2309 1 chr6B.!!$F1 2308
1 TraesCS6B01G262700 chr6D 306135010 306136933 1923 False 751.333333 1206 92.504000 1 1952 3 chr6D.!!$F1 1951
2 TraesCS6B01G262700 chr6A 441496939 441498990 2051 False 707.333333 1129 88.420667 1 1947 3 chr6A.!!$F1 1946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 516 0.541063 TCTGGGGCTTACGAGTCACA 60.541 55.0 0.0 0.0 38.95 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2669 0.105039 GGGCATCGTCCTTGAGTAGG 59.895 60.0 0.0 0.0 46.27 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.806492 CTTAAGCCGCCGTCTTCCTC 60.806 60.000 0.00 0.00 0.00 3.71
25 26 4.194720 CCGCCGTCTTCCTCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
28 29 2.047443 GCCGTCTTCCTCCTCGACT 61.047 63.158 0.00 0.00 0.00 4.18
147 170 3.057104 CCCTCCCACGAAAATTTTGTACC 60.057 47.826 8.47 0.00 0.00 3.34
148 171 3.365565 CCTCCCACGAAAATTTTGTACCG 60.366 47.826 8.47 8.10 0.00 4.02
149 172 2.030981 TCCCACGAAAATTTTGTACCGC 60.031 45.455 8.47 0.00 0.00 5.68
150 173 2.321263 CCACGAAAATTTTGTACCGCC 58.679 47.619 8.47 0.00 0.00 6.13
151 174 2.287668 CCACGAAAATTTTGTACCGCCA 60.288 45.455 8.47 0.00 0.00 5.69
152 175 2.977169 CACGAAAATTTTGTACCGCCAG 59.023 45.455 8.47 0.00 0.00 4.85
153 176 1.982913 CGAAAATTTTGTACCGCCAGC 59.017 47.619 8.47 0.00 0.00 4.85
154 177 2.351350 CGAAAATTTTGTACCGCCAGCT 60.351 45.455 8.47 0.00 0.00 4.24
155 178 2.723124 AAATTTTGTACCGCCAGCTG 57.277 45.000 6.78 6.78 0.00 4.24
156 179 1.904287 AATTTTGTACCGCCAGCTGA 58.096 45.000 17.39 0.00 0.00 4.26
157 180 2.128771 ATTTTGTACCGCCAGCTGAT 57.871 45.000 17.39 0.00 0.00 2.90
158 181 1.448985 TTTTGTACCGCCAGCTGATC 58.551 50.000 17.39 5.53 0.00 2.92
159 182 0.613260 TTTGTACCGCCAGCTGATCT 59.387 50.000 17.39 0.00 0.00 2.75
160 183 0.613260 TTGTACCGCCAGCTGATCTT 59.387 50.000 17.39 0.00 0.00 2.40
161 184 1.480789 TGTACCGCCAGCTGATCTTA 58.519 50.000 17.39 0.00 0.00 2.10
162 185 2.039418 TGTACCGCCAGCTGATCTTAT 58.961 47.619 17.39 0.00 0.00 1.73
163 186 2.035961 TGTACCGCCAGCTGATCTTATC 59.964 50.000 17.39 0.63 0.00 1.75
173 196 5.486526 CAGCTGATCTTATCTCCATTACCC 58.513 45.833 8.42 0.00 0.00 3.69
174 197 5.248020 CAGCTGATCTTATCTCCATTACCCT 59.752 44.000 8.42 0.00 0.00 4.34
175 198 6.438741 CAGCTGATCTTATCTCCATTACCCTA 59.561 42.308 8.42 0.00 0.00 3.53
176 199 6.667414 AGCTGATCTTATCTCCATTACCCTAG 59.333 42.308 0.00 0.00 0.00 3.02
228 270 1.133216 CTTCTCGTCAGATCCGCTTCA 59.867 52.381 0.00 0.00 0.00 3.02
229 271 1.393603 TCTCGTCAGATCCGCTTCAT 58.606 50.000 0.00 0.00 0.00 2.57
240 282 5.636965 CAGATCCGCTTCATAAATACTCCAG 59.363 44.000 0.00 0.00 0.00 3.86
261 303 8.034313 TCCAGATGCCTACTAATTTCACTAAT 57.966 34.615 0.00 0.00 0.00 1.73
304 357 3.366679 CGTAGTAGTCTTTTTCCGCCTCA 60.367 47.826 0.00 0.00 0.00 3.86
305 358 3.320673 AGTAGTCTTTTTCCGCCTCAG 57.679 47.619 0.00 0.00 0.00 3.35
306 359 2.633481 AGTAGTCTTTTTCCGCCTCAGT 59.367 45.455 0.00 0.00 0.00 3.41
307 360 2.640316 AGTCTTTTTCCGCCTCAGTT 57.360 45.000 0.00 0.00 0.00 3.16
308 361 2.932261 AGTCTTTTTCCGCCTCAGTTT 58.068 42.857 0.00 0.00 0.00 2.66
309 362 2.618709 AGTCTTTTTCCGCCTCAGTTTG 59.381 45.455 0.00 0.00 0.00 2.93
310 363 1.336755 TCTTTTTCCGCCTCAGTTTGC 59.663 47.619 0.00 0.00 0.00 3.68
315 368 3.793144 CGCCTCAGTTTGCGCCTC 61.793 66.667 4.18 0.00 44.64 4.70
449 509 5.147330 TGATTATGTATCTGGGGCTTACG 57.853 43.478 0.00 0.00 34.17 3.18
456 516 0.541063 TCTGGGGCTTACGAGTCACA 60.541 55.000 0.00 0.00 38.95 3.58
509 572 9.502091 TCTAAAAGTTAGCATCAGTGTTGTTAT 57.498 29.630 3.24 0.00 0.00 1.89
518 581 5.463061 GCATCAGTGTTGTTATGCTGTTTTT 59.537 36.000 6.51 0.00 41.16 1.94
657 720 2.812011 GCCGGTGTTACAAGAACAGATT 59.188 45.455 1.90 0.00 0.00 2.40
659 722 4.453136 GCCGGTGTTACAAGAACAGATTTA 59.547 41.667 1.90 0.00 0.00 1.40
666 729 8.936864 GTGTTACAAGAACAGATTTATGCTACT 58.063 33.333 0.00 0.00 0.00 2.57
667 730 9.151471 TGTTACAAGAACAGATTTATGCTACTC 57.849 33.333 0.00 0.00 0.00 2.59
668 731 8.604890 GTTACAAGAACAGATTTATGCTACTCC 58.395 37.037 0.00 0.00 0.00 3.85
669 732 6.116126 ACAAGAACAGATTTATGCTACTCCC 58.884 40.000 0.00 0.00 0.00 4.30
671 734 6.168270 AGAACAGATTTATGCTACTCCCTC 57.832 41.667 0.00 0.00 0.00 4.30
672 735 4.965200 ACAGATTTATGCTACTCCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
673 736 3.322254 ACAGATTTATGCTACTCCCTCCG 59.678 47.826 0.00 0.00 0.00 4.63
674 737 3.322254 CAGATTTATGCTACTCCCTCCGT 59.678 47.826 0.00 0.00 0.00 4.69
675 738 3.574826 AGATTTATGCTACTCCCTCCGTC 59.425 47.826 0.00 0.00 0.00 4.79
676 739 1.700955 TTATGCTACTCCCTCCGTCC 58.299 55.000 0.00 0.00 0.00 4.79
677 740 0.851469 TATGCTACTCCCTCCGTCCT 59.149 55.000 0.00 0.00 0.00 3.85
678 741 0.851469 ATGCTACTCCCTCCGTCCTA 59.149 55.000 0.00 0.00 0.00 2.94
679 742 0.627451 TGCTACTCCCTCCGTCCTAA 59.373 55.000 0.00 0.00 0.00 2.69
680 743 1.006281 TGCTACTCCCTCCGTCCTAAA 59.994 52.381 0.00 0.00 0.00 1.85
681 744 2.105766 GCTACTCCCTCCGTCCTAAAA 58.894 52.381 0.00 0.00 0.00 1.52
682 745 2.699321 GCTACTCCCTCCGTCCTAAAAT 59.301 50.000 0.00 0.00 0.00 1.82
683 746 3.893813 GCTACTCCCTCCGTCCTAAAATA 59.106 47.826 0.00 0.00 0.00 1.40
684 747 4.343239 GCTACTCCCTCCGTCCTAAAATAA 59.657 45.833 0.00 0.00 0.00 1.40
685 748 5.509332 GCTACTCCCTCCGTCCTAAAATAAG 60.509 48.000 0.00 0.00 0.00 1.73
686 749 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
687 750 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
688 751 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
689 752 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
690 753 4.081309 CCCTCCGTCCTAAAATAAGTGTCA 60.081 45.833 0.00 0.00 0.00 3.58
691 754 5.484715 CCTCCGTCCTAAAATAAGTGTCAA 58.515 41.667 0.00 0.00 0.00 3.18
692 755 5.350640 CCTCCGTCCTAAAATAAGTGTCAAC 59.649 44.000 0.00 0.00 0.00 3.18
693 756 6.105397 TCCGTCCTAAAATAAGTGTCAACT 57.895 37.500 0.00 0.00 38.71 3.16
695 758 6.993902 TCCGTCCTAAAATAAGTGTCAACTTT 59.006 34.615 0.00 0.00 44.47 2.66
696 759 7.041644 TCCGTCCTAAAATAAGTGTCAACTTTG 60.042 37.037 0.00 0.00 44.47 2.77
697 760 7.255001 CCGTCCTAAAATAAGTGTCAACTTTGT 60.255 37.037 0.00 0.00 44.47 2.83
698 761 8.767085 CGTCCTAAAATAAGTGTCAACTTTGTA 58.233 33.333 0.00 0.00 44.47 2.41
699 762 9.874215 GTCCTAAAATAAGTGTCAACTTTGTAC 57.126 33.333 0.00 0.00 44.47 2.90
700 763 9.841295 TCCTAAAATAAGTGTCAACTTTGTACT 57.159 29.630 0.00 0.00 44.47 2.73
704 767 8.904099 AAATAAGTGTCAACTTTGTACTAGCT 57.096 30.769 0.00 0.00 44.47 3.32
705 768 8.535690 AATAAGTGTCAACTTTGTACTAGCTC 57.464 34.615 0.00 0.00 44.47 4.09
706 769 5.793030 AGTGTCAACTTTGTACTAGCTCT 57.207 39.130 0.00 0.00 30.14 4.09
707 770 6.896021 AGTGTCAACTTTGTACTAGCTCTA 57.104 37.500 0.00 0.00 30.14 2.43
708 771 6.679843 AGTGTCAACTTTGTACTAGCTCTAC 58.320 40.000 0.00 0.00 30.14 2.59
709 772 5.568296 GTGTCAACTTTGTACTAGCTCTACG 59.432 44.000 0.00 0.00 0.00 3.51
710 773 5.471116 TGTCAACTTTGTACTAGCTCTACGA 59.529 40.000 0.00 0.00 0.00 3.43
711 774 5.794448 GTCAACTTTGTACTAGCTCTACGAC 59.206 44.000 0.00 0.00 0.00 4.34
712 775 5.471116 TCAACTTTGTACTAGCTCTACGACA 59.529 40.000 0.00 0.00 0.00 4.35
713 776 5.954296 ACTTTGTACTAGCTCTACGACAA 57.046 39.130 0.00 0.00 0.00 3.18
714 777 6.323203 ACTTTGTACTAGCTCTACGACAAA 57.677 37.500 0.00 0.82 35.93 2.83
715 778 6.921914 ACTTTGTACTAGCTCTACGACAAAT 58.078 36.000 10.76 2.97 36.51 2.32
716 779 7.376615 ACTTTGTACTAGCTCTACGACAAATT 58.623 34.615 10.76 5.35 36.51 1.82
717 780 7.871463 ACTTTGTACTAGCTCTACGACAAATTT 59.129 33.333 10.76 0.00 36.51 1.82
718 781 7.576750 TTGTACTAGCTCTACGACAAATTTG 57.423 36.000 16.67 16.67 0.00 2.32
719 782 6.684686 TGTACTAGCTCTACGACAAATTTGT 58.315 36.000 23.49 23.49 45.65 2.83
720 783 7.819644 TGTACTAGCTCTACGACAAATTTGTA 58.180 34.615 23.33 7.89 42.43 2.41
721 784 7.752239 TGTACTAGCTCTACGACAAATTTGTAC 59.248 37.037 23.33 15.19 42.43 2.90
722 785 6.921914 ACTAGCTCTACGACAAATTTGTACT 58.078 36.000 23.33 13.48 42.43 2.73
723 786 8.048534 ACTAGCTCTACGACAAATTTGTACTA 57.951 34.615 23.33 13.86 42.43 1.82
724 787 8.517878 ACTAGCTCTACGACAAATTTGTACTAA 58.482 33.333 23.33 8.96 42.43 2.24
725 788 7.813852 AGCTCTACGACAAATTTGTACTAAG 57.186 36.000 23.33 16.94 42.43 2.18
726 789 6.310711 AGCTCTACGACAAATTTGTACTAAGC 59.689 38.462 23.33 23.61 42.43 3.09
727 790 6.310711 GCTCTACGACAAATTTGTACTAAGCT 59.689 38.462 23.33 0.00 42.43 3.74
728 791 7.462988 GCTCTACGACAAATTTGTACTAAGCTC 60.463 40.741 23.33 7.91 42.43 4.09
729 792 7.372714 TCTACGACAAATTTGTACTAAGCTCA 58.627 34.615 23.33 2.07 42.43 4.26
730 793 6.854496 ACGACAAATTTGTACTAAGCTCAA 57.146 33.333 23.33 0.00 42.43 3.02
731 794 6.888430 ACGACAAATTTGTACTAAGCTCAAG 58.112 36.000 23.33 6.38 42.43 3.02
732 795 6.704493 ACGACAAATTTGTACTAAGCTCAAGA 59.296 34.615 23.33 0.00 42.43 3.02
733 796 7.010023 CGACAAATTTGTACTAAGCTCAAGAC 58.990 38.462 23.33 5.46 42.43 3.01
734 797 7.307160 CGACAAATTTGTACTAAGCTCAAGACA 60.307 37.037 23.33 0.00 42.43 3.41
735 798 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
736 799 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
737 800 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
738 801 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
739 802 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
740 803 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
741 804 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
742 805 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
743 806 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
744 807 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
745 808 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
746 809 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
747 810 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
748 811 4.762251 GCTCAAGACACTTATTTTGGGACT 59.238 41.667 0.00 0.00 0.00 3.85
749 812 5.335191 GCTCAAGACACTTATTTTGGGACTG 60.335 44.000 0.00 0.00 0.00 3.51
750 813 5.935945 TCAAGACACTTATTTTGGGACTGA 58.064 37.500 0.00 0.00 0.00 3.41
751 814 5.997746 TCAAGACACTTATTTTGGGACTGAG 59.002 40.000 0.00 0.00 0.00 3.35
752 815 4.911390 AGACACTTATTTTGGGACTGAGG 58.089 43.478 0.00 0.00 0.00 3.86
753 816 4.010349 GACACTTATTTTGGGACTGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
754 817 3.655777 ACACTTATTTTGGGACTGAGGGA 59.344 43.478 0.00 0.00 0.00 4.20
755 818 4.263506 ACACTTATTTTGGGACTGAGGGAG 60.264 45.833 0.00 0.00 0.00 4.30
862 925 4.052518 CTGGCCTTGGAGTGGGGG 62.053 72.222 3.32 0.00 0.00 5.40
866 929 4.748144 CCTTGGAGTGGGGGCTGC 62.748 72.222 0.00 0.00 0.00 5.25
873 936 4.284550 GTGGGGGCTGCTGGTTCA 62.285 66.667 0.00 0.00 0.00 3.18
1011 1075 2.493278 AGGCTGAAAAATGATGGGTTCG 59.507 45.455 0.00 0.00 0.00 3.95
1320 1384 7.707104 AGTCGGGATCATGAATGTAATTTTTC 58.293 34.615 0.00 0.00 36.07 2.29
1333 1397 9.836739 GAATGTAATTTTTCTCGACTCGATTAG 57.163 33.333 0.62 0.00 36.07 1.73
1344 1408 3.059044 CGACTCGATTAGTGTTTGTTCCG 59.941 47.826 0.00 0.00 39.07 4.30
1345 1409 4.232221 GACTCGATTAGTGTTTGTTCCGA 58.768 43.478 0.00 0.00 39.07 4.55
1388 1452 2.006888 CATGTAGCCACGAATCGGTTT 58.993 47.619 7.80 0.00 0.00 3.27
1394 1458 2.482721 AGCCACGAATCGGTTTGTAAAG 59.517 45.455 7.80 0.00 30.66 1.85
1516 1580 8.754230 AACTTACGGAAACTTATCAAGTACTC 57.246 34.615 0.00 0.00 41.91 2.59
1519 1583 4.776308 ACGGAAACTTATCAAGTACTCCCT 59.224 41.667 0.00 0.00 41.91 4.20
1520 1584 5.105432 ACGGAAACTTATCAAGTACTCCCTC 60.105 44.000 0.00 0.00 41.91 4.30
1521 1585 5.127356 CGGAAACTTATCAAGTACTCCCTCT 59.873 44.000 0.00 0.00 41.91 3.69
1523 1587 6.070710 GGAAACTTATCAAGTACTCCCTCTGT 60.071 42.308 0.00 0.00 41.91 3.41
1524 1588 7.123847 GGAAACTTATCAAGTACTCCCTCTGTA 59.876 40.741 0.00 0.00 41.91 2.74
1525 1589 8.431910 AAACTTATCAAGTACTCCCTCTGTAA 57.568 34.615 0.00 0.00 41.91 2.41
1526 1590 8.431910 AACTTATCAAGTACTCCCTCTGTAAA 57.568 34.615 0.00 0.00 41.91 2.01
1527 1591 8.068892 ACTTATCAAGTACTCCCTCTGTAAAG 57.931 38.462 0.00 2.19 40.69 1.85
1528 1592 7.894364 ACTTATCAAGTACTCCCTCTGTAAAGA 59.106 37.037 0.00 0.00 40.69 2.52
1529 1593 8.660295 TTATCAAGTACTCCCTCTGTAAAGAA 57.340 34.615 0.00 0.00 0.00 2.52
1530 1594 6.989155 TCAAGTACTCCCTCTGTAAAGAAA 57.011 37.500 0.00 0.00 0.00 2.52
1531 1595 7.554959 TCAAGTACTCCCTCTGTAAAGAAAT 57.445 36.000 0.00 0.00 0.00 2.17
1532 1596 8.660295 TCAAGTACTCCCTCTGTAAAGAAATA 57.340 34.615 0.00 0.00 0.00 1.40
1533 1597 9.268282 TCAAGTACTCCCTCTGTAAAGAAATAT 57.732 33.333 0.00 0.00 0.00 1.28
1539 1603 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
1572 1636 6.759827 TCACAAAAGTAGTGACCTAAACACTC 59.240 38.462 0.00 0.00 45.58 3.51
1573 1637 6.761714 CACAAAAGTAGTGACCTAAACACTCT 59.238 38.462 0.00 0.00 45.58 3.24
1575 1639 8.480501 ACAAAAGTAGTGACCTAAACACTCTTA 58.519 33.333 0.00 0.00 45.58 2.10
1579 1643 9.708092 AAGTAGTGACCTAAACACTCTTATTTC 57.292 33.333 0.00 0.00 45.58 2.17
1580 1644 9.091220 AGTAGTGACCTAAACACTCTTATTTCT 57.909 33.333 0.00 0.00 45.58 2.52
1585 1649 9.498176 TGACCTAAACACTCTTATTTCTTTACC 57.502 33.333 0.00 0.00 0.00 2.85
1586 1650 8.543862 ACCTAAACACTCTTATTTCTTTACCG 57.456 34.615 0.00 0.00 0.00 4.02
1587 1651 8.370182 ACCTAAACACTCTTATTTCTTTACCGA 58.630 33.333 0.00 0.00 0.00 4.69
1588 1652 8.870879 CCTAAACACTCTTATTTCTTTACCGAG 58.129 37.037 0.00 0.00 0.00 4.63
1589 1653 7.668525 AAACACTCTTATTTCTTTACCGAGG 57.331 36.000 0.00 0.00 0.00 4.63
1592 1656 6.043411 CACTCTTATTTCTTTACCGAGGGAG 58.957 44.000 0.00 0.00 0.00 4.30
1606 1670 4.184629 CCGAGGGAGTACAAATTTCTCTG 58.815 47.826 0.00 0.00 0.00 3.35
1634 1822 9.044150 TGGAAGCATTTGTCATTTAAGAAAAAG 57.956 29.630 0.00 0.00 28.86 2.27
1654 1853 1.272147 GGGGGATTCACAAGCTGAAGT 60.272 52.381 0.00 0.00 42.36 3.01
1657 1856 3.055094 GGGGATTCACAAGCTGAAGTCTA 60.055 47.826 0.00 0.00 42.36 2.59
1711 2092 8.713737 TCATGATTCATGAAAGTGAGACTAAG 57.286 34.615 23.72 0.00 46.17 2.18
1712 2093 7.767659 TCATGATTCATGAAAGTGAGACTAAGG 59.232 37.037 23.72 0.00 46.17 2.69
1713 2094 7.009179 TGATTCATGAAAGTGAGACTAAGGT 57.991 36.000 13.09 0.00 0.00 3.50
1714 2095 8.134202 TGATTCATGAAAGTGAGACTAAGGTA 57.866 34.615 13.09 0.00 0.00 3.08
1718 2099 9.793259 TTCATGAAAGTGAGACTAAGGTAATTT 57.207 29.630 5.45 0.00 0.00 1.82
1783 2169 4.000325 TCGAAGCACAATTAGCAAAGCTA 59.000 39.130 5.04 0.00 40.44 3.32
1811 2200 3.708403 TCAGCCATGAATTGTCTGTCT 57.292 42.857 0.00 0.00 30.61 3.41
1906 2296 6.365970 AACTCTCAAGCTCTGAAAATCCTA 57.634 37.500 0.00 0.00 32.17 2.94
1910 2301 7.887495 ACTCTCAAGCTCTGAAAATCCTAATTT 59.113 33.333 0.00 0.00 36.64 1.82
1952 2343 0.531974 TCTCTGCCACAACGGTTGAC 60.532 55.000 26.39 15.15 36.97 3.18
1953 2344 1.507141 CTCTGCCACAACGGTTGACC 61.507 60.000 26.39 13.78 36.97 4.02
1954 2345 2.517402 TGCCACAACGGTTGACCC 60.517 61.111 26.39 13.47 36.97 4.46
1955 2346 2.203294 GCCACAACGGTTGACCCT 60.203 61.111 26.39 1.76 36.97 4.34
1956 2347 2.258726 GCCACAACGGTTGACCCTC 61.259 63.158 26.39 7.54 36.97 4.30
1957 2348 1.147376 CCACAACGGTTGACCCTCA 59.853 57.895 26.39 0.00 0.00 3.86
1958 2349 0.250727 CCACAACGGTTGACCCTCAT 60.251 55.000 26.39 0.00 0.00 2.90
1959 2350 1.604604 CACAACGGTTGACCCTCATT 58.395 50.000 26.39 0.00 0.00 2.57
1960 2351 1.535462 CACAACGGTTGACCCTCATTC 59.465 52.381 26.39 0.00 0.00 2.67
1961 2352 0.796312 CAACGGTTGACCCTCATTCG 59.204 55.000 15.66 0.00 0.00 3.34
1962 2353 0.953960 AACGGTTGACCCTCATTCGC 60.954 55.000 0.00 0.00 0.00 4.70
1963 2354 2.106683 CGGTTGACCCTCATTCGCC 61.107 63.158 0.00 0.00 0.00 5.54
1964 2355 1.002624 GGTTGACCCTCATTCGCCA 60.003 57.895 0.00 0.00 0.00 5.69
1965 2356 1.305930 GGTTGACCCTCATTCGCCAC 61.306 60.000 0.00 0.00 0.00 5.01
1966 2357 1.002624 TTGACCCTCATTCGCCACC 60.003 57.895 0.00 0.00 0.00 4.61
1967 2358 2.124695 GACCCTCATTCGCCACCC 60.125 66.667 0.00 0.00 0.00 4.61
1968 2359 3.699134 GACCCTCATTCGCCACCCC 62.699 68.421 0.00 0.00 0.00 4.95
1969 2360 4.506255 CCCTCATTCGCCACCCCC 62.506 72.222 0.00 0.00 0.00 5.40
1970 2361 3.727258 CCTCATTCGCCACCCCCA 61.727 66.667 0.00 0.00 0.00 4.96
1971 2362 2.438434 CTCATTCGCCACCCCCAC 60.438 66.667 0.00 0.00 0.00 4.61
1972 2363 3.995506 CTCATTCGCCACCCCCACC 62.996 68.421 0.00 0.00 0.00 4.61
2036 2427 3.227276 CGCCTGACGCCTCCCTAT 61.227 66.667 0.00 0.00 33.16 2.57
2037 2428 2.797278 CGCCTGACGCCTCCCTATT 61.797 63.158 0.00 0.00 33.16 1.73
2038 2429 1.227674 GCCTGACGCCTCCCTATTG 60.228 63.158 0.00 0.00 0.00 1.90
2039 2430 1.447643 CCTGACGCCTCCCTATTGG 59.552 63.158 0.00 0.00 0.00 3.16
2040 2431 1.227674 CTGACGCCTCCCTATTGGC 60.228 63.158 0.00 0.00 45.25 4.52
2041 2432 2.111251 GACGCCTCCCTATTGGCC 59.889 66.667 0.00 0.00 45.90 5.36
2042 2433 3.809374 GACGCCTCCCTATTGGCCG 62.809 68.421 0.00 0.00 45.90 6.13
2043 2434 3.546543 CGCCTCCCTATTGGCCGA 61.547 66.667 0.00 0.00 45.90 5.54
2044 2435 2.427753 GCCTCCCTATTGGCCGAG 59.572 66.667 0.00 0.00 43.11 4.63
2045 2436 3.151906 CCTCCCTATTGGCCGAGG 58.848 66.667 10.56 10.56 36.12 4.63
2046 2437 2.427753 CTCCCTATTGGCCGAGGC 59.572 66.667 11.81 5.37 41.06 4.70
2058 2449 4.096003 CGAGGCCGTTCCACCCAT 62.096 66.667 0.00 0.00 37.29 4.00
2059 2450 2.438434 GAGGCCGTTCCACCCATG 60.438 66.667 0.00 0.00 37.29 3.66
2060 2451 4.740822 AGGCCGTTCCACCCATGC 62.741 66.667 0.00 0.00 37.29 4.06
2062 2453 3.443045 GCCGTTCCACCCATGCAG 61.443 66.667 0.00 0.00 0.00 4.41
2063 2454 3.443045 CCGTTCCACCCATGCAGC 61.443 66.667 0.00 0.00 0.00 5.25
2064 2455 2.360350 CGTTCCACCCATGCAGCT 60.360 61.111 0.00 0.00 0.00 4.24
2065 2456 2.693762 CGTTCCACCCATGCAGCTG 61.694 63.158 10.11 10.11 0.00 4.24
2066 2457 2.677524 TTCCACCCATGCAGCTGC 60.678 61.111 31.89 31.89 42.50 5.25
2093 2484 3.567797 GCTCCGCACCGCTTGATC 61.568 66.667 0.00 0.00 0.00 2.92
2094 2485 2.185350 CTCCGCACCGCTTGATCT 59.815 61.111 0.00 0.00 0.00 2.75
2095 2486 1.880340 CTCCGCACCGCTTGATCTC 60.880 63.158 0.00 0.00 0.00 2.75
2096 2487 2.892425 CCGCACCGCTTGATCTCC 60.892 66.667 0.00 0.00 0.00 3.71
2097 2488 3.257561 CGCACCGCTTGATCTCCG 61.258 66.667 0.00 0.00 0.00 4.63
2098 2489 3.567797 GCACCGCTTGATCTCCGC 61.568 66.667 0.00 0.00 0.00 5.54
2099 2490 2.125552 CACCGCTTGATCTCCGCA 60.126 61.111 0.00 0.00 0.00 5.69
2100 2491 2.125512 ACCGCTTGATCTCCGCAC 60.126 61.111 0.00 0.00 0.00 5.34
2101 2492 2.892425 CCGCTTGATCTCCGCACC 60.892 66.667 0.00 0.00 0.00 5.01
2102 2493 2.185350 CGCTTGATCTCCGCACCT 59.815 61.111 0.00 0.00 0.00 4.00
2103 2494 1.448540 CGCTTGATCTCCGCACCTT 60.449 57.895 0.00 0.00 0.00 3.50
2104 2495 1.424493 CGCTTGATCTCCGCACCTTC 61.424 60.000 0.00 0.00 0.00 3.46
2105 2496 1.424493 GCTTGATCTCCGCACCTTCG 61.424 60.000 0.00 0.00 0.00 3.79
2106 2497 0.108615 CTTGATCTCCGCACCTTCGT 60.109 55.000 0.00 0.00 0.00 3.85
2107 2498 0.108804 TTGATCTCCGCACCTTCGTC 60.109 55.000 0.00 0.00 0.00 4.20
2108 2499 0.965866 TGATCTCCGCACCTTCGTCT 60.966 55.000 0.00 0.00 0.00 4.18
2109 2500 0.526524 GATCTCCGCACCTTCGTCTG 60.527 60.000 0.00 0.00 0.00 3.51
2110 2501 2.564553 ATCTCCGCACCTTCGTCTGC 62.565 60.000 0.00 0.00 0.00 4.26
2111 2502 3.573772 CTCCGCACCTTCGTCTGCA 62.574 63.158 0.00 0.00 32.57 4.41
2112 2503 3.414700 CCGCACCTTCGTCTGCAC 61.415 66.667 0.00 0.00 32.57 4.57
2113 2504 3.414700 CGCACCTTCGTCTGCACC 61.415 66.667 0.00 0.00 32.57 5.01
2114 2505 2.280797 GCACCTTCGTCTGCACCA 60.281 61.111 0.00 0.00 33.31 4.17
2115 2506 1.672356 GCACCTTCGTCTGCACCAT 60.672 57.895 0.00 0.00 33.31 3.55
2116 2507 1.915614 GCACCTTCGTCTGCACCATG 61.916 60.000 0.00 0.00 33.31 3.66
2117 2508 1.672356 ACCTTCGTCTGCACCATGC 60.672 57.895 0.00 0.00 45.29 4.06
2126 2517 2.644418 GCACCATGCAAACGCAGA 59.356 55.556 0.00 0.00 44.13 4.26
2127 2518 1.213537 GCACCATGCAAACGCAGAT 59.786 52.632 0.00 0.00 44.13 2.90
2128 2519 0.799534 GCACCATGCAAACGCAGATC 60.800 55.000 0.00 0.00 44.13 2.75
2129 2520 0.521867 CACCATGCAAACGCAGATCG 60.522 55.000 0.00 0.00 44.13 3.69
2130 2521 0.673333 ACCATGCAAACGCAGATCGA 60.673 50.000 0.00 0.00 44.13 3.59
2131 2522 0.247814 CCATGCAAACGCAGATCGAC 60.248 55.000 0.00 0.00 44.13 4.20
2132 2523 0.247814 CATGCAAACGCAGATCGACC 60.248 55.000 0.00 0.00 44.13 4.79
2133 2524 1.695893 ATGCAAACGCAGATCGACCG 61.696 55.000 0.00 0.00 44.13 4.79
2134 2525 2.395690 CAAACGCAGATCGACCGC 59.604 61.111 0.00 0.00 41.67 5.68
2139 2530 4.194720 GCAGATCGACCGCGTCCT 62.195 66.667 4.92 0.00 38.98 3.85
2140 2531 2.024871 CAGATCGACCGCGTCCTC 59.975 66.667 4.92 2.11 38.98 3.71
2141 2532 3.210528 AGATCGACCGCGTCCTCC 61.211 66.667 4.92 0.00 38.98 4.30
2142 2533 4.267503 GATCGACCGCGTCCTCCC 62.268 72.222 4.92 0.00 38.98 4.30
2170 2561 4.710695 TCACGTCGACGCCGCAAT 62.711 61.111 35.92 14.38 44.43 3.56
2171 2562 4.483683 CACGTCGACGCCGCAATG 62.484 66.667 35.92 21.98 44.43 2.82
2172 2563 4.710695 ACGTCGACGCCGCAATGA 62.711 61.111 35.92 0.00 44.43 2.57
2173 2564 3.902063 CGTCGACGCCGCAATGAG 61.902 66.667 26.59 0.00 35.37 2.90
2174 2565 3.554692 GTCGACGCCGCAATGAGG 61.555 66.667 0.00 0.00 35.37 3.86
2175 2566 4.063967 TCGACGCCGCAATGAGGT 62.064 61.111 4.68 0.00 35.37 3.85
2176 2567 3.853330 CGACGCCGCAATGAGGTG 61.853 66.667 14.88 14.88 44.36 4.00
2177 2568 4.166011 GACGCCGCAATGAGGTGC 62.166 66.667 16.30 5.94 42.69 5.01
2180 2571 4.120331 GCCGCAATGAGGTGCCAC 62.120 66.667 4.68 0.00 41.73 5.01
2181 2572 3.443045 CCGCAATGAGGTGCCACC 61.443 66.667 5.50 5.50 41.73 4.61
2182 2573 3.443045 CGCAATGAGGTGCCACCC 61.443 66.667 11.06 2.62 41.73 4.61
2183 2574 2.283101 GCAATGAGGTGCCACCCA 60.283 61.111 11.06 8.90 39.75 4.51
2184 2575 1.907807 GCAATGAGGTGCCACCCAA 60.908 57.895 11.06 0.00 39.75 4.12
2185 2576 1.966762 CAATGAGGTGCCACCCAAC 59.033 57.895 11.06 3.26 39.75 3.77
2186 2577 0.540365 CAATGAGGTGCCACCCAACT 60.540 55.000 11.06 0.00 46.47 3.16
2187 2578 0.188342 AATGAGGTGCCACCCAACTT 59.812 50.000 11.06 0.00 42.97 2.66
2188 2579 0.251341 ATGAGGTGCCACCCAACTTC 60.251 55.000 11.06 1.26 42.97 3.01
2189 2580 1.150536 GAGGTGCCACCCAACTTCA 59.849 57.895 11.06 0.00 42.97 3.02
2190 2581 1.152756 AGGTGCCACCCAACTTCAC 60.153 57.895 11.06 0.00 38.73 3.18
2191 2582 1.152756 GGTGCCACCCAACTTCACT 60.153 57.895 1.17 0.00 30.04 3.41
2192 2583 1.172812 GGTGCCACCCAACTTCACTC 61.173 60.000 1.17 0.00 30.04 3.51
2193 2584 1.150536 TGCCACCCAACTTCACTCC 59.849 57.895 0.00 0.00 0.00 3.85
2194 2585 1.966451 GCCACCCAACTTCACTCCG 60.966 63.158 0.00 0.00 0.00 4.63
2195 2586 1.752198 CCACCCAACTTCACTCCGA 59.248 57.895 0.00 0.00 0.00 4.55
2196 2587 0.320771 CCACCCAACTTCACTCCGAG 60.321 60.000 0.00 0.00 0.00 4.63
2197 2588 0.320771 CACCCAACTTCACTCCGAGG 60.321 60.000 0.00 0.00 0.00 4.63
2198 2589 0.471211 ACCCAACTTCACTCCGAGGA 60.471 55.000 0.00 0.00 0.00 3.71
2199 2590 0.247736 CCCAACTTCACTCCGAGGAG 59.752 60.000 17.01 17.01 46.91 3.69
2200 2591 1.257743 CCAACTTCACTCCGAGGAGA 58.742 55.000 24.53 1.52 44.53 3.71
2201 2592 1.618837 CCAACTTCACTCCGAGGAGAA 59.381 52.381 24.53 9.49 44.53 2.87
2202 2593 2.353208 CCAACTTCACTCCGAGGAGAAG 60.353 54.545 24.53 21.84 44.53 2.85
2203 2594 0.892063 ACTTCACTCCGAGGAGAAGC 59.108 55.000 24.53 0.00 44.53 3.86
2204 2595 0.179150 CTTCACTCCGAGGAGAAGCG 60.179 60.000 24.53 10.33 44.53 4.68
2210 2601 4.129737 CGAGGAGAAGCGGGCGAA 62.130 66.667 0.00 0.00 0.00 4.70
2211 2602 2.501610 GAGGAGAAGCGGGCGAAT 59.498 61.111 0.00 0.00 0.00 3.34
2212 2603 1.592939 GAGGAGAAGCGGGCGAATC 60.593 63.158 0.00 0.00 0.00 2.52
2213 2604 2.962253 GGAGAAGCGGGCGAATCG 60.962 66.667 0.00 0.00 0.00 3.34
2224 2615 2.588877 CGAATCGCCAAGGCCGAT 60.589 61.111 5.34 8.80 37.98 4.18
2225 2616 2.598632 CGAATCGCCAAGGCCGATC 61.599 63.158 15.23 6.71 37.98 3.69
2226 2617 2.588877 AATCGCCAAGGCCGATCG 60.589 61.111 8.51 8.51 37.98 3.69
2227 2618 4.609018 ATCGCCAAGGCCGATCGG 62.609 66.667 30.03 30.03 37.98 4.18
2237 2628 3.470888 CCGATCGGGGCTTGGACT 61.471 66.667 26.95 0.00 0.00 3.85
2238 2629 2.107141 CGATCGGGGCTTGGACTC 59.893 66.667 7.38 0.00 0.00 3.36
2239 2630 2.506472 GATCGGGGCTTGGACTCC 59.494 66.667 0.00 0.00 0.00 3.85
2240 2631 3.447025 GATCGGGGCTTGGACTCCG 62.447 68.421 0.00 0.00 43.42 4.63
2242 2633 4.148825 CGGGGCTTGGACTCCGAG 62.149 72.222 7.92 7.92 44.69 4.63
2243 2634 2.683933 GGGGCTTGGACTCCGAGA 60.684 66.667 15.86 0.00 37.20 4.04
2244 2635 2.066999 GGGGCTTGGACTCCGAGAT 61.067 63.158 15.86 0.00 37.20 2.75
2245 2636 1.144936 GGGCTTGGACTCCGAGATG 59.855 63.158 15.86 0.00 37.20 2.90
2246 2637 1.330655 GGGCTTGGACTCCGAGATGA 61.331 60.000 15.86 0.00 37.20 2.92
2247 2638 0.537188 GGCTTGGACTCCGAGATGAA 59.463 55.000 15.86 0.00 37.20 2.57
2248 2639 1.472376 GGCTTGGACTCCGAGATGAAG 60.472 57.143 15.86 1.83 37.20 3.02
2249 2640 1.472376 GCTTGGACTCCGAGATGAAGG 60.472 57.143 15.86 0.00 37.20 3.46
2250 2641 0.537188 TTGGACTCCGAGATGAAGGC 59.463 55.000 1.33 0.00 0.00 4.35
2251 2642 1.330655 TGGACTCCGAGATGAAGGCC 61.331 60.000 1.33 0.00 0.00 5.19
2252 2643 1.330655 GGACTCCGAGATGAAGGCCA 61.331 60.000 5.01 0.00 0.00 5.36
2253 2644 0.537188 GACTCCGAGATGAAGGCCAA 59.463 55.000 5.01 0.00 0.00 4.52
2254 2645 0.539051 ACTCCGAGATGAAGGCCAAG 59.461 55.000 5.01 0.00 0.00 3.61
2255 2646 0.813210 CTCCGAGATGAAGGCCAAGC 60.813 60.000 5.01 0.00 0.00 4.01
2256 2647 2.176273 CCGAGATGAAGGCCAAGCG 61.176 63.158 5.01 0.00 0.00 4.68
2257 2648 2.817423 CGAGATGAAGGCCAAGCGC 61.817 63.158 5.01 0.00 0.00 5.92
2258 2649 2.817423 GAGATGAAGGCCAAGCGCG 61.817 63.158 5.01 0.00 38.94 6.86
2259 2650 3.127533 GATGAAGGCCAAGCGCGT 61.128 61.111 8.43 0.00 38.94 6.01
2260 2651 3.386867 GATGAAGGCCAAGCGCGTG 62.387 63.158 16.87 16.87 38.94 5.34
2275 2666 4.143333 GTGCTTCTCCGGCGCCTA 62.143 66.667 26.68 11.82 34.55 3.93
2276 2667 3.838271 TGCTTCTCCGGCGCCTAG 61.838 66.667 26.68 21.28 0.00 3.02
2277 2668 4.593864 GCTTCTCCGGCGCCTAGG 62.594 72.222 26.68 19.82 0.00 3.02
2278 2669 4.593864 CTTCTCCGGCGCCTAGGC 62.594 72.222 26.68 24.75 42.76 3.93
2286 2677 3.217231 GCGCCTAGGCCTACTCAA 58.783 61.111 28.09 0.00 37.98 3.02
2287 2678 1.068250 GCGCCTAGGCCTACTCAAG 59.932 63.158 28.09 12.21 37.98 3.02
2294 2685 3.669354 GGCCTACTCAAGGACGATG 57.331 57.895 0.00 0.00 46.09 3.84
2295 2686 0.530870 GGCCTACTCAAGGACGATGC 60.531 60.000 0.00 0.00 46.09 3.91
2296 2687 3.832041 GGCCTACTCAAGGACGATGCC 62.832 61.905 0.00 0.00 46.09 4.40
2297 2688 3.669354 CTACTCAAGGACGATGCCC 57.331 57.895 0.00 0.00 0.00 5.36
2298 2689 0.105039 CTACTCAAGGACGATGCCCC 59.895 60.000 0.00 0.00 0.00 5.80
2299 2690 1.672854 TACTCAAGGACGATGCCCCG 61.673 60.000 0.00 0.00 0.00 5.73
2300 2691 2.682136 TCAAGGACGATGCCCCGA 60.682 61.111 1.78 0.00 0.00 5.14
2301 2692 2.032860 CTCAAGGACGATGCCCCGAT 62.033 60.000 1.78 0.00 0.00 4.18
2302 2693 1.889105 CAAGGACGATGCCCCGATG 60.889 63.158 1.78 0.00 0.00 3.84
2303 2694 3.106986 AAGGACGATGCCCCGATGG 62.107 63.158 1.78 0.00 37.09 3.51
2304 2695 3.546543 GGACGATGCCCCGATGGA 61.547 66.667 1.78 0.00 35.39 3.41
2305 2696 2.280186 GACGATGCCCCGATGGAC 60.280 66.667 1.78 0.00 35.39 4.02
2306 2697 4.221422 ACGATGCCCCGATGGACG 62.221 66.667 1.78 0.00 42.18 4.79
2307 2698 3.911698 CGATGCCCCGATGGACGA 61.912 66.667 0.00 0.00 45.77 4.20
2308 2699 2.504032 GATGCCCCGATGGACGAA 59.496 61.111 0.00 0.00 45.77 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.217244 GAGGAAGACGGCGGCTTAA 59.783 57.895 30.46 0.00 0.00 1.85
25 26 1.593209 TGTGTTGCGGTCGGAAGTC 60.593 57.895 0.00 0.00 0.00 3.01
28 29 2.962786 CGTGTGTTGCGGTCGGAA 60.963 61.111 0.00 0.00 0.00 4.30
95 96 4.272504 GCTGGAGCAATACGCAGTAATAAA 59.727 41.667 0.00 0.00 43.83 1.40
126 129 3.365565 CGGTACAAAATTTTCGTGGGAGG 60.366 47.826 0.00 0.00 0.00 4.30
127 130 3.817238 CGGTACAAAATTTTCGTGGGAG 58.183 45.455 0.00 0.00 0.00 4.30
128 131 2.030981 GCGGTACAAAATTTTCGTGGGA 60.031 45.455 0.00 0.00 0.00 4.37
129 132 2.321263 GCGGTACAAAATTTTCGTGGG 58.679 47.619 0.00 0.00 0.00 4.61
130 133 2.287668 TGGCGGTACAAAATTTTCGTGG 60.288 45.455 0.00 0.00 0.00 4.94
147 170 1.342496 TGGAGATAAGATCAGCTGGCG 59.658 52.381 15.13 0.00 0.00 5.69
148 171 3.699411 ATGGAGATAAGATCAGCTGGC 57.301 47.619 15.13 6.63 0.00 4.85
149 172 5.486526 GGTAATGGAGATAAGATCAGCTGG 58.513 45.833 15.13 0.00 0.00 4.85
150 173 5.248020 AGGGTAATGGAGATAAGATCAGCTG 59.752 44.000 7.63 7.63 0.00 4.24
151 174 5.410602 AGGGTAATGGAGATAAGATCAGCT 58.589 41.667 0.00 0.00 0.00 4.24
152 175 5.753721 AGGGTAATGGAGATAAGATCAGC 57.246 43.478 0.00 0.00 0.00 4.26
153 176 8.527810 GTTCTAGGGTAATGGAGATAAGATCAG 58.472 40.741 0.00 0.00 0.00 2.90
154 177 7.455008 GGTTCTAGGGTAATGGAGATAAGATCA 59.545 40.741 0.00 0.00 0.00 2.92
155 178 7.093245 GGGTTCTAGGGTAATGGAGATAAGATC 60.093 44.444 0.00 0.00 0.00 2.75
156 179 6.731448 GGGTTCTAGGGTAATGGAGATAAGAT 59.269 42.308 0.00 0.00 0.00 2.40
157 180 6.082707 GGGTTCTAGGGTAATGGAGATAAGA 58.917 44.000 0.00 0.00 0.00 2.10
158 181 6.085416 AGGGTTCTAGGGTAATGGAGATAAG 58.915 44.000 0.00 0.00 0.00 1.73
159 182 6.051946 AGGGTTCTAGGGTAATGGAGATAA 57.948 41.667 0.00 0.00 0.00 1.75
160 183 5.698369 AGGGTTCTAGGGTAATGGAGATA 57.302 43.478 0.00 0.00 0.00 1.98
161 184 4.578149 AGGGTTCTAGGGTAATGGAGAT 57.422 45.455 0.00 0.00 0.00 2.75
162 185 4.735537 TCTAGGGTTCTAGGGTAATGGAGA 59.264 45.833 0.00 0.00 42.42 3.71
163 186 5.076057 TCTAGGGTTCTAGGGTAATGGAG 57.924 47.826 0.00 0.00 42.42 3.86
173 196 5.402997 ACGAAAAGGTTCTAGGGTTCTAG 57.597 43.478 0.00 0.00 43.27 2.43
174 197 5.813513 AACGAAAAGGTTCTAGGGTTCTA 57.186 39.130 0.00 0.00 0.00 2.10
175 198 4.701651 AACGAAAAGGTTCTAGGGTTCT 57.298 40.909 0.00 0.00 0.00 3.01
176 199 5.559608 CGAAAACGAAAAGGTTCTAGGGTTC 60.560 44.000 0.00 0.00 0.00 3.62
229 271 9.998106 GAAATTAGTAGGCATCTGGAGTATTTA 57.002 33.333 0.00 0.00 0.00 1.40
240 282 9.646427 CTCCTATTAGTGAAATTAGTAGGCATC 57.354 37.037 0.00 0.00 38.07 3.91
261 303 7.774157 ACTACGAAGTCAAATATCTCACTCCTA 59.226 37.037 0.00 0.00 43.93 2.94
281 323 2.821969 AGGCGGAAAAAGACTACTACGA 59.178 45.455 0.00 0.00 0.00 3.43
304 357 0.254178 ATGGATCAGAGGCGCAAACT 59.746 50.000 10.83 1.48 0.00 2.66
305 358 0.659957 GATGGATCAGAGGCGCAAAC 59.340 55.000 10.83 0.00 0.00 2.93
306 359 0.464373 GGATGGATCAGAGGCGCAAA 60.464 55.000 10.83 0.00 0.00 3.68
307 360 1.146930 GGATGGATCAGAGGCGCAA 59.853 57.895 10.83 0.00 0.00 4.85
308 361 1.413256 ATGGATGGATCAGAGGCGCA 61.413 55.000 10.83 0.00 0.00 6.09
309 362 0.954449 CATGGATGGATCAGAGGCGC 60.954 60.000 0.00 0.00 0.00 6.53
310 363 0.395686 ACATGGATGGATCAGAGGCG 59.604 55.000 0.00 0.00 0.00 5.52
311 364 3.558746 CCTTACATGGATGGATCAGAGGC 60.559 52.174 3.64 0.00 0.00 4.70
312 365 3.906218 TCCTTACATGGATGGATCAGAGG 59.094 47.826 8.50 0.00 0.00 3.69
313 366 4.560311 CGTCCTTACATGGATGGATCAGAG 60.560 50.000 15.33 2.74 38.97 3.35
314 367 3.321968 CGTCCTTACATGGATGGATCAGA 59.678 47.826 15.33 0.00 38.97 3.27
315 368 3.657634 CGTCCTTACATGGATGGATCAG 58.342 50.000 15.33 7.09 38.97 2.90
381 434 8.306761 GGACACAAAATCAAAACCTAGATTCAT 58.693 33.333 0.00 0.00 33.58 2.57
383 436 6.801862 CGGACACAAAATCAAAACCTAGATTC 59.198 38.462 0.00 0.00 33.58 2.52
449 509 5.107453 CGTGTTTCCTTCTATGTTGTGACTC 60.107 44.000 0.00 0.00 0.00 3.36
456 516 5.127491 TCAAACCGTGTTTCCTTCTATGTT 58.873 37.500 0.00 0.00 0.00 2.71
509 572 2.293122 CTGGAACGGATCAAAAACAGCA 59.707 45.455 0.00 0.00 36.31 4.41
657 720 1.217183 AGGACGGAGGGAGTAGCATAA 59.783 52.381 0.00 0.00 0.00 1.90
659 722 0.851469 TAGGACGGAGGGAGTAGCAT 59.149 55.000 0.00 0.00 0.00 3.79
666 729 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
667 730 4.081309 TGACACTTATTTTAGGACGGAGGG 60.081 45.833 0.00 0.00 0.00 4.30
668 731 5.080969 TGACACTTATTTTAGGACGGAGG 57.919 43.478 0.00 0.00 0.00 4.30
669 732 6.164176 AGTTGACACTTATTTTAGGACGGAG 58.836 40.000 0.00 0.00 0.00 4.63
671 734 6.796705 AAGTTGACACTTATTTTAGGACGG 57.203 37.500 0.00 0.00 41.81 4.79
672 735 7.636326 ACAAAGTTGACACTTATTTTAGGACG 58.364 34.615 0.00 0.00 42.89 4.79
673 736 9.874215 GTACAAAGTTGACACTTATTTTAGGAC 57.126 33.333 0.00 0.00 42.89 3.85
674 737 9.841295 AGTACAAAGTTGACACTTATTTTAGGA 57.159 29.630 0.00 0.00 42.89 2.94
678 741 9.338622 AGCTAGTACAAAGTTGACACTTATTTT 57.661 29.630 0.00 0.00 42.89 1.82
679 742 8.904099 AGCTAGTACAAAGTTGACACTTATTT 57.096 30.769 0.00 0.00 42.89 1.40
680 743 8.368668 AGAGCTAGTACAAAGTTGACACTTATT 58.631 33.333 0.00 0.00 42.89 1.40
681 744 7.897864 AGAGCTAGTACAAAGTTGACACTTAT 58.102 34.615 0.00 0.00 42.89 1.73
682 745 7.286215 AGAGCTAGTACAAAGTTGACACTTA 57.714 36.000 0.00 0.00 42.89 2.24
683 746 6.163135 AGAGCTAGTACAAAGTTGACACTT 57.837 37.500 0.00 0.00 45.89 3.16
684 747 5.793030 AGAGCTAGTACAAAGTTGACACT 57.207 39.130 0.00 3.65 33.74 3.55
685 748 5.568296 CGTAGAGCTAGTACAAAGTTGACAC 59.432 44.000 0.00 0.00 0.00 3.67
686 749 5.471116 TCGTAGAGCTAGTACAAAGTTGACA 59.529 40.000 0.00 0.00 0.00 3.58
687 750 5.794448 GTCGTAGAGCTAGTACAAAGTTGAC 59.206 44.000 0.00 1.78 36.95 3.18
688 751 5.471116 TGTCGTAGAGCTAGTACAAAGTTGA 59.529 40.000 0.00 0.00 36.95 3.18
689 752 5.696822 TGTCGTAGAGCTAGTACAAAGTTG 58.303 41.667 0.00 0.00 36.95 3.16
690 753 5.954296 TGTCGTAGAGCTAGTACAAAGTT 57.046 39.130 0.00 0.00 36.95 2.66
691 754 5.954296 TTGTCGTAGAGCTAGTACAAAGT 57.046 39.130 0.00 0.00 36.95 2.66
692 755 7.813852 AATTTGTCGTAGAGCTAGTACAAAG 57.186 36.000 16.16 0.00 39.40 2.77
693 756 7.654520 ACAAATTTGTCGTAGAGCTAGTACAAA 59.345 33.333 18.13 14.58 40.07 2.83
694 757 7.149973 ACAAATTTGTCGTAGAGCTAGTACAA 58.850 34.615 18.13 2.11 36.50 2.41
695 758 6.684686 ACAAATTTGTCGTAGAGCTAGTACA 58.315 36.000 18.13 0.00 36.50 2.90
696 759 7.967303 AGTACAAATTTGTCGTAGAGCTAGTAC 59.033 37.037 26.46 14.11 42.35 2.73
697 760 8.048534 AGTACAAATTTGTCGTAGAGCTAGTA 57.951 34.615 26.46 2.36 42.35 1.82
698 761 6.921914 AGTACAAATTTGTCGTAGAGCTAGT 58.078 36.000 26.46 6.76 42.35 2.57
699 762 8.906636 TTAGTACAAATTTGTCGTAGAGCTAG 57.093 34.615 26.46 0.00 42.35 3.42
700 763 7.487189 GCTTAGTACAAATTTGTCGTAGAGCTA 59.513 37.037 26.46 14.42 42.35 3.32
701 764 6.310711 GCTTAGTACAAATTTGTCGTAGAGCT 59.689 38.462 26.46 15.24 42.35 4.09
702 765 6.310711 AGCTTAGTACAAATTTGTCGTAGAGC 59.689 38.462 26.46 25.03 42.35 4.09
703 766 7.541091 TGAGCTTAGTACAAATTTGTCGTAGAG 59.459 37.037 26.46 18.29 42.35 2.43
704 767 7.372714 TGAGCTTAGTACAAATTTGTCGTAGA 58.627 34.615 26.46 6.87 42.35 2.59
705 768 7.576750 TGAGCTTAGTACAAATTTGTCGTAG 57.423 36.000 26.46 18.75 42.35 3.51
706 769 7.868922 TCTTGAGCTTAGTACAAATTTGTCGTA 59.131 33.333 26.46 15.98 42.35 3.43
707 770 6.704493 TCTTGAGCTTAGTACAAATTTGTCGT 59.296 34.615 26.46 16.95 42.35 4.34
708 771 7.010023 GTCTTGAGCTTAGTACAAATTTGTCG 58.990 38.462 26.46 12.21 42.35 4.35
709 772 7.798982 GTGTCTTGAGCTTAGTACAAATTTGTC 59.201 37.037 26.46 17.36 42.35 3.18
710 773 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
711 774 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
712 775 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
713 776 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
714 777 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
715 778 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
716 779 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
717 780 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
718 781 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
719 782 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
720 783 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
721 784 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
722 785 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
723 786 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
724 787 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
725 788 4.762251 AGTCCCAAAATAAGTGTCTTGAGC 59.238 41.667 0.00 0.00 0.00 4.26
726 789 5.997746 TCAGTCCCAAAATAAGTGTCTTGAG 59.002 40.000 0.00 0.00 0.00 3.02
727 790 5.935945 TCAGTCCCAAAATAAGTGTCTTGA 58.064 37.500 0.00 0.00 0.00 3.02
728 791 5.182001 CCTCAGTCCCAAAATAAGTGTCTTG 59.818 44.000 0.00 0.00 0.00 3.02
729 792 5.316987 CCTCAGTCCCAAAATAAGTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
730 793 4.263506 CCCTCAGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
731 794 4.010349 CCCTCAGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
732 795 3.655777 TCCCTCAGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
733 796 4.263506 ACTCCCTCAGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
734 797 3.916989 ACTCCCTCAGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
735 798 4.576330 ACTCCCTCAGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
736 799 4.847512 TGTACTCCCTCAGTCCCAAAATAA 59.152 41.667 0.00 0.00 36.43 1.40
737 800 4.431378 TGTACTCCCTCAGTCCCAAAATA 58.569 43.478 0.00 0.00 36.43 1.40
738 801 3.256704 TGTACTCCCTCAGTCCCAAAAT 58.743 45.455 0.00 0.00 36.43 1.82
739 802 2.696775 TGTACTCCCTCAGTCCCAAAA 58.303 47.619 0.00 0.00 36.43 2.44
740 803 2.409064 TGTACTCCCTCAGTCCCAAA 57.591 50.000 0.00 0.00 36.43 3.28
741 804 2.187958 CATGTACTCCCTCAGTCCCAA 58.812 52.381 0.00 0.00 36.43 4.12
742 805 1.361197 TCATGTACTCCCTCAGTCCCA 59.639 52.381 0.00 0.00 36.43 4.37
743 806 2.160721 TCATGTACTCCCTCAGTCCC 57.839 55.000 0.00 0.00 36.43 4.46
744 807 4.475345 ACTATCATGTACTCCCTCAGTCC 58.525 47.826 0.00 0.00 36.43 3.85
745 808 7.768807 AATACTATCATGTACTCCCTCAGTC 57.231 40.000 0.00 0.00 36.43 3.51
746 809 8.554490 AAAATACTATCATGTACTCCCTCAGT 57.446 34.615 0.00 0.00 39.41 3.41
862 925 2.416431 GGATTGACATTGAACCAGCAGC 60.416 50.000 0.00 0.00 0.00 5.25
898 961 8.859236 ATAGCAATAGCATGTTACATGATTCT 57.141 30.769 27.17 16.97 45.49 2.40
918 981 4.331108 TCACCATTGCAAGTGTAATAGCA 58.669 39.130 15.93 0.00 35.45 3.49
919 982 4.963276 TCACCATTGCAAGTGTAATAGC 57.037 40.909 15.93 0.00 35.45 2.97
920 983 8.213518 AGTAATCACCATTGCAAGTGTAATAG 57.786 34.615 15.93 0.79 35.45 1.73
1011 1075 1.566018 GCACAACACTGGTACCTCGC 61.566 60.000 14.36 0.43 0.00 5.03
1320 1384 4.323868 GGAACAAACACTAATCGAGTCGAG 59.676 45.833 21.36 9.95 39.91 4.04
1333 1397 7.566868 GCAATCAACTTATTTCGGAACAAACAC 60.567 37.037 0.00 0.00 0.00 3.32
1344 1408 6.753279 TGCTATTGCTGCAATCAACTTATTTC 59.247 34.615 29.29 9.29 40.48 2.17
1345 1409 6.632909 TGCTATTGCTGCAATCAACTTATTT 58.367 32.000 29.29 7.06 40.48 1.40
1388 1452 4.081807 TGCATGCCATAACATTGCTTTACA 60.082 37.500 16.68 0.00 0.00 2.41
1394 1458 5.929992 AGAAATATGCATGCCATAACATTGC 59.070 36.000 16.68 4.32 39.71 3.56
1435 1499 1.750778 ACACTTCAACCAAGGCAACAG 59.249 47.619 0.00 0.00 36.26 3.16
1514 1578 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
1515 1579 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
1516 1580 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
1545 1609 7.441458 AGTGTTTAGGTCACTACTTTTGTGATC 59.559 37.037 0.00 0.00 44.74 2.92
1547 1611 6.646267 AGTGTTTAGGTCACTACTTTTGTGA 58.354 36.000 0.00 0.00 43.17 3.58
1548 1612 6.761714 AGAGTGTTTAGGTCACTACTTTTGTG 59.238 38.462 0.00 0.00 44.68 3.33
1549 1613 6.885922 AGAGTGTTTAGGTCACTACTTTTGT 58.114 36.000 0.00 0.00 44.68 2.83
1550 1614 7.787725 AAGAGTGTTTAGGTCACTACTTTTG 57.212 36.000 0.00 0.00 44.68 2.44
1553 1617 9.708092 GAAATAAGAGTGTTTAGGTCACTACTT 57.292 33.333 0.00 0.00 44.68 2.24
1560 1624 8.654215 CGGTAAAGAAATAAGAGTGTTTAGGTC 58.346 37.037 0.00 0.00 0.00 3.85
1561 1625 8.370182 TCGGTAAAGAAATAAGAGTGTTTAGGT 58.630 33.333 0.00 0.00 0.00 3.08
1562 1626 8.767478 TCGGTAAAGAAATAAGAGTGTTTAGG 57.233 34.615 0.00 0.00 0.00 2.69
1563 1627 8.870879 CCTCGGTAAAGAAATAAGAGTGTTTAG 58.129 37.037 0.00 0.00 0.00 1.85
1565 1629 6.653740 CCCTCGGTAAAGAAATAAGAGTGTTT 59.346 38.462 0.00 0.00 0.00 2.83
1566 1630 6.013984 TCCCTCGGTAAAGAAATAAGAGTGTT 60.014 38.462 0.00 0.00 0.00 3.32
1568 1632 5.974108 TCCCTCGGTAAAGAAATAAGAGTG 58.026 41.667 0.00 0.00 0.00 3.51
1569 1633 5.720520 ACTCCCTCGGTAAAGAAATAAGAGT 59.279 40.000 0.00 0.00 0.00 3.24
1571 1635 6.664816 TGTACTCCCTCGGTAAAGAAATAAGA 59.335 38.462 0.00 0.00 0.00 2.10
1572 1636 6.870769 TGTACTCCCTCGGTAAAGAAATAAG 58.129 40.000 0.00 0.00 0.00 1.73
1573 1637 6.855763 TGTACTCCCTCGGTAAAGAAATAA 57.144 37.500 0.00 0.00 0.00 1.40
1575 1639 5.750352 TTGTACTCCCTCGGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
1578 1642 5.750352 AATTTGTACTCCCTCGGTAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
1579 1643 6.171213 AGAAATTTGTACTCCCTCGGTAAAG 58.829 40.000 0.00 0.00 0.00 1.85
1580 1644 6.013984 AGAGAAATTTGTACTCCCTCGGTAAA 60.014 38.462 0.00 0.00 0.00 2.01
1584 1648 4.184629 CAGAGAAATTTGTACTCCCTCGG 58.815 47.826 0.00 0.00 0.00 4.63
1585 1649 3.619038 GCAGAGAAATTTGTACTCCCTCG 59.381 47.826 0.00 0.00 0.00 4.63
1586 1650 4.633565 CAGCAGAGAAATTTGTACTCCCTC 59.366 45.833 0.00 0.00 0.00 4.30
1587 1651 4.566488 CCAGCAGAGAAATTTGTACTCCCT 60.566 45.833 0.00 0.00 0.00 4.20
1588 1652 3.691609 CCAGCAGAGAAATTTGTACTCCC 59.308 47.826 0.00 0.00 0.00 4.30
1589 1653 4.579869 TCCAGCAGAGAAATTTGTACTCC 58.420 43.478 0.00 0.00 0.00 3.85
1592 1656 4.727475 GCTTCCAGCAGAGAAATTTGTAC 58.273 43.478 0.00 0.00 41.89 2.90
1606 1670 5.713025 TCTTAAATGACAAATGCTTCCAGC 58.287 37.500 0.00 0.00 42.82 4.85
1620 1789 6.784969 TGTGAATCCCCCTTTTTCTTAAATGA 59.215 34.615 0.00 0.00 0.00 2.57
1621 1790 7.003402 TGTGAATCCCCCTTTTTCTTAAATG 57.997 36.000 0.00 0.00 0.00 2.32
1627 1815 2.899900 GCTTGTGAATCCCCCTTTTTCT 59.100 45.455 0.00 0.00 0.00 2.52
1634 1822 1.272147 ACTTCAGCTTGTGAATCCCCC 60.272 52.381 0.00 0.00 44.44 5.40
1690 2071 9.606631 ATTACCTTAGTCTCACTTTCATGAATC 57.393 33.333 9.40 0.00 0.00 2.52
1692 2073 9.793259 AAATTACCTTAGTCTCACTTTCATGAA 57.207 29.630 3.38 3.38 0.00 2.57
1693 2074 9.793259 AAAATTACCTTAGTCTCACTTTCATGA 57.207 29.630 0.00 0.00 0.00 3.07
1728 2109 5.748152 GCTTTGCAGTCAAAATACACTTTCA 59.252 36.000 0.00 0.00 41.22 2.69
1740 2121 6.569780 TCGACTATATTAGCTTTGCAGTCAA 58.430 36.000 0.00 0.00 32.39 3.18
1811 2200 0.597568 CACAGAAAATGCGGCTGGAA 59.402 50.000 0.00 0.00 34.05 3.53
1906 2296 2.036346 GGCCAAAGAGTGAGTGCAAATT 59.964 45.455 0.00 0.00 0.00 1.82
1910 2301 1.228245 GGGCCAAAGAGTGAGTGCA 60.228 57.895 4.39 0.00 0.00 4.57
1952 2343 4.506255 GGGGGTGGCGAATGAGGG 62.506 72.222 0.00 0.00 0.00 4.30
1953 2344 3.727258 TGGGGGTGGCGAATGAGG 61.727 66.667 0.00 0.00 0.00 3.86
1954 2345 2.438434 GTGGGGGTGGCGAATGAG 60.438 66.667 0.00 0.00 0.00 2.90
1955 2346 4.041762 GGTGGGGGTGGCGAATGA 62.042 66.667 0.00 0.00 0.00 2.57
2020 2411 1.227674 CAATAGGGAGGCGTCAGGC 60.228 63.158 8.91 0.00 44.19 4.85
2021 2412 1.447643 CCAATAGGGAGGCGTCAGG 59.552 63.158 8.91 0.00 40.01 3.86
2022 2413 1.227674 GCCAATAGGGAGGCGTCAG 60.228 63.158 8.91 0.00 41.70 3.51
2023 2414 2.908015 GCCAATAGGGAGGCGTCA 59.092 61.111 8.91 0.00 41.70 4.35
2028 2419 3.151906 CCTCGGCCAATAGGGAGG 58.848 66.667 2.24 5.54 40.01 4.30
2029 2420 2.427753 GCCTCGGCCAATAGGGAG 59.572 66.667 15.63 6.96 40.01 4.30
2041 2432 4.096003 ATGGGTGGAACGGCCTCG 62.096 66.667 0.00 0.00 38.12 4.63
2042 2433 2.438434 CATGGGTGGAACGGCCTC 60.438 66.667 0.00 0.00 38.12 4.70
2043 2434 4.740822 GCATGGGTGGAACGGCCT 62.741 66.667 0.00 0.00 38.12 5.19
2045 2436 3.443045 CTGCATGGGTGGAACGGC 61.443 66.667 0.00 0.00 38.12 5.68
2046 2437 3.443045 GCTGCATGGGTGGAACGG 61.443 66.667 0.00 0.00 38.12 4.44
2047 2438 2.360350 AGCTGCATGGGTGGAACG 60.360 61.111 1.02 0.00 38.12 3.95
2048 2439 2.998279 GCAGCTGCATGGGTGGAAC 61.998 63.158 33.36 0.00 41.59 3.62
2049 2440 2.677524 GCAGCTGCATGGGTGGAA 60.678 61.111 33.36 0.00 41.59 3.53
2077 2468 1.880340 GAGATCAAGCGGTGCGGAG 60.880 63.158 0.00 0.00 0.00 4.63
2078 2469 2.184322 GAGATCAAGCGGTGCGGA 59.816 61.111 0.00 0.00 0.00 5.54
2079 2470 2.892425 GGAGATCAAGCGGTGCGG 60.892 66.667 0.00 0.00 0.00 5.69
2080 2471 3.257561 CGGAGATCAAGCGGTGCG 61.258 66.667 0.00 0.00 0.00 5.34
2081 2472 3.567797 GCGGAGATCAAGCGGTGC 61.568 66.667 0.00 0.00 0.00 5.01
2082 2473 2.125552 TGCGGAGATCAAGCGGTG 60.126 61.111 0.00 0.00 0.00 4.94
2083 2474 2.125512 GTGCGGAGATCAAGCGGT 60.126 61.111 0.00 0.00 0.00 5.68
2084 2475 2.859273 AAGGTGCGGAGATCAAGCGG 62.859 60.000 0.00 0.00 0.00 5.52
2085 2476 1.424493 GAAGGTGCGGAGATCAAGCG 61.424 60.000 0.00 0.00 0.00 4.68
2086 2477 1.424493 CGAAGGTGCGGAGATCAAGC 61.424 60.000 0.00 0.00 0.00 4.01
2087 2478 0.108615 ACGAAGGTGCGGAGATCAAG 60.109 55.000 0.00 0.00 35.12 3.02
2088 2479 0.108804 GACGAAGGTGCGGAGATCAA 60.109 55.000 0.00 0.00 35.12 2.57
2089 2480 0.965866 AGACGAAGGTGCGGAGATCA 60.966 55.000 0.00 0.00 35.12 2.92
2090 2481 0.526524 CAGACGAAGGTGCGGAGATC 60.527 60.000 0.00 0.00 35.12 2.75
2091 2482 1.513158 CAGACGAAGGTGCGGAGAT 59.487 57.895 0.00 0.00 35.12 2.75
2092 2483 2.962569 CAGACGAAGGTGCGGAGA 59.037 61.111 0.00 0.00 35.12 3.71
2093 2484 2.811317 GCAGACGAAGGTGCGGAG 60.811 66.667 0.00 0.00 32.18 4.63
2094 2485 3.611674 TGCAGACGAAGGTGCGGA 61.612 61.111 0.00 0.00 43.35 5.54
2095 2486 3.414700 GTGCAGACGAAGGTGCGG 61.415 66.667 0.00 0.00 43.35 5.69
2096 2487 3.414700 GGTGCAGACGAAGGTGCG 61.415 66.667 0.00 0.00 43.35 5.34
2097 2488 1.672356 ATGGTGCAGACGAAGGTGC 60.672 57.895 0.00 0.00 41.23 5.01
2098 2489 1.915614 GCATGGTGCAGACGAAGGTG 61.916 60.000 0.00 0.00 44.26 4.00
2099 2490 1.672356 GCATGGTGCAGACGAAGGT 60.672 57.895 0.00 0.00 44.26 3.50
2100 2491 3.181367 GCATGGTGCAGACGAAGG 58.819 61.111 0.00 0.00 44.26 3.46
2116 2507 2.395690 CGGTCGATCTGCGTTTGC 59.604 61.111 0.00 0.00 41.80 3.68
2117 2508 2.395690 GCGGTCGATCTGCGTTTG 59.604 61.111 0.00 0.00 41.80 2.93
2122 2513 4.194720 AGGACGCGGTCGATCTGC 62.195 66.667 12.47 8.28 44.34 4.26
2123 2514 2.024871 GAGGACGCGGTCGATCTG 59.975 66.667 12.47 0.00 39.41 2.90
2124 2515 3.210528 GGAGGACGCGGTCGATCT 61.211 66.667 12.47 0.00 39.41 2.75
2125 2516 4.267503 GGGAGGACGCGGTCGATC 62.268 72.222 12.47 7.41 39.41 3.69
2153 2544 4.710695 ATTGCGGCGTCGACGTGA 62.711 61.111 35.48 18.81 42.22 4.35
2154 2545 4.483683 CATTGCGGCGTCGACGTG 62.484 66.667 35.48 28.41 42.22 4.49
2155 2546 4.710695 TCATTGCGGCGTCGACGT 62.711 61.111 35.48 15.02 42.22 4.34
2156 2547 3.902063 CTCATTGCGGCGTCGACG 61.902 66.667 32.57 32.57 43.27 5.12
2157 2548 3.554692 CCTCATTGCGGCGTCGAC 61.555 66.667 16.53 5.18 39.00 4.20
2158 2549 4.063967 ACCTCATTGCGGCGTCGA 62.064 61.111 16.53 0.00 39.00 4.20
2159 2550 3.853330 CACCTCATTGCGGCGTCG 61.853 66.667 4.29 4.29 39.81 5.12
2160 2551 4.166011 GCACCTCATTGCGGCGTC 62.166 66.667 9.37 0.91 31.51 5.19
2163 2554 4.120331 GTGGCACCTCATTGCGGC 62.120 66.667 6.29 0.00 44.00 6.53
2164 2555 3.443045 GGTGGCACCTCATTGCGG 61.443 66.667 29.22 0.00 44.00 5.69
2165 2556 3.443045 GGGTGGCACCTCATTGCG 61.443 66.667 33.87 0.00 44.00 4.85
2166 2557 1.907807 TTGGGTGGCACCTCATTGC 60.908 57.895 33.87 17.88 42.18 3.56
2167 2558 0.540365 AGTTGGGTGGCACCTCATTG 60.540 55.000 33.87 0.00 38.64 2.82
2168 2559 0.188342 AAGTTGGGTGGCACCTCATT 59.812 50.000 33.87 20.61 38.64 2.57
2169 2560 0.251341 GAAGTTGGGTGGCACCTCAT 60.251 55.000 33.87 18.12 38.64 2.90
2170 2561 1.150536 GAAGTTGGGTGGCACCTCA 59.849 57.895 33.87 26.21 38.64 3.86
2171 2562 1.150536 TGAAGTTGGGTGGCACCTC 59.849 57.895 33.87 23.48 38.64 3.85
2172 2563 1.152756 GTGAAGTTGGGTGGCACCT 60.153 57.895 33.87 15.96 38.64 4.00
2173 2564 1.152756 AGTGAAGTTGGGTGGCACC 60.153 57.895 28.69 28.69 37.60 5.01
2174 2565 1.172812 GGAGTGAAGTTGGGTGGCAC 61.173 60.000 9.70 9.70 0.00 5.01
2175 2566 1.150536 GGAGTGAAGTTGGGTGGCA 59.849 57.895 0.00 0.00 0.00 4.92
2176 2567 1.966451 CGGAGTGAAGTTGGGTGGC 60.966 63.158 0.00 0.00 0.00 5.01
2177 2568 0.320771 CTCGGAGTGAAGTTGGGTGG 60.321 60.000 0.00 0.00 0.00 4.61
2178 2569 0.320771 CCTCGGAGTGAAGTTGGGTG 60.321 60.000 4.02 0.00 0.00 4.61
2179 2570 0.471211 TCCTCGGAGTGAAGTTGGGT 60.471 55.000 4.02 0.00 0.00 4.51
2180 2571 0.247736 CTCCTCGGAGTGAAGTTGGG 59.752 60.000 4.02 0.00 37.47 4.12
2181 2572 1.257743 TCTCCTCGGAGTGAAGTTGG 58.742 55.000 12.43 0.00 42.49 3.77
2182 2573 2.928731 GCTTCTCCTCGGAGTGAAGTTG 60.929 54.545 25.10 12.01 42.49 3.16
2183 2574 1.273886 GCTTCTCCTCGGAGTGAAGTT 59.726 52.381 25.10 0.00 42.49 2.66
2184 2575 0.892063 GCTTCTCCTCGGAGTGAAGT 59.108 55.000 25.10 0.00 42.49 3.01
2185 2576 0.179150 CGCTTCTCCTCGGAGTGAAG 60.179 60.000 22.63 22.63 42.49 3.02
2186 2577 1.883732 CGCTTCTCCTCGGAGTGAA 59.116 57.895 12.43 7.28 42.49 3.18
2187 2578 3.592070 CGCTTCTCCTCGGAGTGA 58.408 61.111 12.43 0.00 42.49 3.41
2193 2584 3.432051 ATTCGCCCGCTTCTCCTCG 62.432 63.158 0.00 0.00 0.00 4.63
2194 2585 1.592939 GATTCGCCCGCTTCTCCTC 60.593 63.158 0.00 0.00 0.00 3.71
2195 2586 2.501610 GATTCGCCCGCTTCTCCT 59.498 61.111 0.00 0.00 0.00 3.69
2196 2587 2.962253 CGATTCGCCCGCTTCTCC 60.962 66.667 0.00 0.00 0.00 3.71
2220 2611 3.447025 GAGTCCAAGCCCCGATCGG 62.447 68.421 27.65 27.65 0.00 4.18
2221 2612 2.107141 GAGTCCAAGCCCCGATCG 59.893 66.667 8.51 8.51 0.00 3.69
2222 2613 2.506472 GGAGTCCAAGCCCCGATC 59.494 66.667 3.60 0.00 0.00 3.69
2223 2614 3.470888 CGGAGTCCAAGCCCCGAT 61.471 66.667 10.49 0.00 44.29 4.18
2225 2616 4.148825 CTCGGAGTCCAAGCCCCG 62.149 72.222 10.49 0.00 43.02 5.73
2226 2617 2.066999 ATCTCGGAGTCCAAGCCCC 61.067 63.158 10.49 0.00 0.00 5.80
2227 2618 1.144936 CATCTCGGAGTCCAAGCCC 59.855 63.158 10.49 0.00 0.00 5.19
2228 2619 0.537188 TTCATCTCGGAGTCCAAGCC 59.463 55.000 10.49 0.00 0.00 4.35
2229 2620 1.472376 CCTTCATCTCGGAGTCCAAGC 60.472 57.143 10.49 0.00 0.00 4.01
2230 2621 1.472376 GCCTTCATCTCGGAGTCCAAG 60.472 57.143 10.49 0.00 0.00 3.61
2231 2622 0.537188 GCCTTCATCTCGGAGTCCAA 59.463 55.000 10.49 0.00 0.00 3.53
2232 2623 1.330655 GGCCTTCATCTCGGAGTCCA 61.331 60.000 10.49 0.00 0.00 4.02
2233 2624 1.330655 TGGCCTTCATCTCGGAGTCC 61.331 60.000 3.32 0.00 0.00 3.85
2234 2625 0.537188 TTGGCCTTCATCTCGGAGTC 59.463 55.000 3.32 0.00 0.00 3.36
2235 2626 0.539051 CTTGGCCTTCATCTCGGAGT 59.461 55.000 3.32 0.00 0.00 3.85
2236 2627 0.813210 GCTTGGCCTTCATCTCGGAG 60.813 60.000 3.32 0.00 0.00 4.63
2237 2628 1.221840 GCTTGGCCTTCATCTCGGA 59.778 57.895 3.32 0.00 0.00 4.55
2238 2629 2.176273 CGCTTGGCCTTCATCTCGG 61.176 63.158 3.32 0.00 0.00 4.63
2239 2630 2.817423 GCGCTTGGCCTTCATCTCG 61.817 63.158 3.32 0.00 34.80 4.04
2240 2631 2.817423 CGCGCTTGGCCTTCATCTC 61.817 63.158 5.56 0.00 38.94 2.75
2241 2632 2.821366 CGCGCTTGGCCTTCATCT 60.821 61.111 5.56 0.00 38.94 2.90
2242 2633 3.127533 ACGCGCTTGGCCTTCATC 61.128 61.111 5.73 0.00 38.94 2.92
2243 2634 3.434319 CACGCGCTTGGCCTTCAT 61.434 61.111 5.73 0.00 38.94 2.57
2258 2649 4.143333 TAGGCGCCGGAGAAGCAC 62.143 66.667 23.20 1.14 0.00 4.40
2259 2650 3.838271 CTAGGCGCCGGAGAAGCA 61.838 66.667 23.20 0.00 0.00 3.91
2260 2651 4.593864 CCTAGGCGCCGGAGAAGC 62.594 72.222 27.24 6.21 0.00 3.86
2261 2652 4.593864 GCCTAGGCGCCGGAGAAG 62.594 72.222 27.24 17.62 0.00 2.85
2269 2660 1.068250 CTTGAGTAGGCCTAGGCGC 59.932 63.158 27.24 19.43 43.06 6.53
2270 2661 0.755698 TCCTTGAGTAGGCCTAGGCG 60.756 60.000 27.24 10.69 44.37 5.52
2271 2662 0.753867 GTCCTTGAGTAGGCCTAGGC 59.246 60.000 26.55 26.55 44.37 3.93
2272 2663 1.033574 CGTCCTTGAGTAGGCCTAGG 58.966 60.000 14.38 12.90 44.37 3.02
2273 2664 2.054232 TCGTCCTTGAGTAGGCCTAG 57.946 55.000 14.38 1.90 44.37 3.02
2274 2665 2.307768 CATCGTCCTTGAGTAGGCCTA 58.692 52.381 8.91 8.91 44.37 3.93
2275 2666 1.115467 CATCGTCCTTGAGTAGGCCT 58.885 55.000 11.78 11.78 44.37 5.19
2276 2667 0.530870 GCATCGTCCTTGAGTAGGCC 60.531 60.000 0.00 0.00 44.37 5.19
2277 2668 0.530870 GGCATCGTCCTTGAGTAGGC 60.531 60.000 0.00 0.00 44.37 3.93
2278 2669 0.105039 GGGCATCGTCCTTGAGTAGG 59.895 60.000 0.00 0.00 46.27 3.18
2279 2670 0.105039 GGGGCATCGTCCTTGAGTAG 59.895 60.000 0.00 0.00 0.00 2.57
2280 2671 1.672854 CGGGGCATCGTCCTTGAGTA 61.673 60.000 0.00 0.00 0.00 2.59
2281 2672 2.990479 GGGGCATCGTCCTTGAGT 59.010 61.111 0.00 0.00 0.00 3.41
2282 2673 2.032860 ATCGGGGCATCGTCCTTGAG 62.033 60.000 0.00 0.00 0.00 3.02
2283 2674 2.063979 ATCGGGGCATCGTCCTTGA 61.064 57.895 0.00 0.00 0.00 3.02
2284 2675 1.889105 CATCGGGGCATCGTCCTTG 60.889 63.158 0.00 0.00 0.00 3.61
2285 2676 2.505982 CATCGGGGCATCGTCCTT 59.494 61.111 0.00 0.00 0.00 3.36
2286 2677 3.550431 CCATCGGGGCATCGTCCT 61.550 66.667 0.00 0.00 0.00 3.85
2287 2678 3.546543 TCCATCGGGGCATCGTCC 61.547 66.667 0.00 0.00 36.21 4.79
2288 2679 2.280186 GTCCATCGGGGCATCGTC 60.280 66.667 0.00 0.00 39.19 4.20
2289 2680 4.221422 CGTCCATCGGGGCATCGT 62.221 66.667 0.00 0.00 39.40 3.73
2290 2681 3.439513 TTCGTCCATCGGGGCATCG 62.440 63.158 0.00 0.00 39.40 3.84
2291 2682 2.504032 TTCGTCCATCGGGGCATC 59.496 61.111 0.00 0.00 39.40 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.