Multiple sequence alignment - TraesCS6B01G262400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G262400 chr6B 100.000 6183 0 0 1 6183 472615224 472609042 0.000000e+00 11418.0
1 TraesCS6B01G262400 chr6B 88.050 159 18 1 392 550 710781487 710781644 2.940000e-43 187.0
2 TraesCS6B01G262400 chr6B 95.745 94 4 0 3071 3164 646750152 646750059 1.070000e-32 152.0
3 TraesCS6B01G262400 chr6D 94.905 2473 75 19 3163 5590 304737561 304740027 0.000000e+00 3821.0
4 TraesCS6B01G262400 chr6D 93.493 2551 78 31 556 3082 304735077 304737563 0.000000e+00 3711.0
5 TraesCS6B01G262400 chr6D 92.333 300 8 4 31 324 304734679 304734969 4.460000e-111 412.0
6 TraesCS6B01G262400 chr6D 95.918 49 2 0 5937 5985 304765581 304765629 5.140000e-11 80.5
7 TraesCS6B01G262400 chr6A 97.033 2022 57 3 3163 5183 410582066 410580047 0.000000e+00 3398.0
8 TraesCS6B01G262400 chr6A 92.485 2129 77 34 988 3082 410584143 410582064 0.000000e+00 2968.0
9 TraesCS6B01G262400 chr6A 90.092 757 30 21 5184 5912 410580015 410579276 0.000000e+00 941.0
10 TraesCS6B01G262400 chr6A 89.863 365 16 9 31 381 410584973 410584616 3.400000e-122 449.0
11 TraesCS6B01G262400 chr6A 89.299 271 8 8 5921 6183 410579227 410578970 2.780000e-83 320.0
12 TraesCS6B01G262400 chr2B 87.179 312 40 0 1144 1455 559193249 559192938 7.620000e-94 355.0
13 TraesCS6B01G262400 chr2B 85.350 314 46 0 1142 1455 557990213 557990526 5.980000e-85 326.0
14 TraesCS6B01G262400 chr2B 84.326 319 42 8 1141 1455 559306331 559306645 7.790000e-79 305.0
15 TraesCS6B01G262400 chr2B 84.821 112 16 1 3194 3305 559417048 559417158 1.820000e-20 111.0
16 TraesCS6B01G262400 chr2A 86.392 316 42 1 1144 1459 619628311 619627997 1.650000e-90 344.0
17 TraesCS6B01G262400 chr2A 85.809 303 39 4 1155 1455 619765233 619765533 1.000000e-82 318.0
18 TraesCS6B01G262400 chr2A 84.639 319 41 8 1141 1455 619755074 619755388 1.670000e-80 311.0
19 TraesCS6B01G262400 chr2A 87.500 112 13 1 3194 3305 619766162 619766272 1.810000e-25 128.0
20 TraesCS6B01G262400 chr2D 86.076 316 44 0 1144 1459 477264759 477264444 2.130000e-89 340.0
21 TraesCS6B01G262400 chr2D 95.876 97 2 2 3080 3175 589522337 589522242 8.300000e-34 156.0
22 TraesCS6B01G262400 chr2D 85.235 149 21 1 404 551 492995432 492995580 1.070000e-32 152.0
23 TraesCS6B01G262400 chr2D 86.842 114 14 1 392 505 50342020 50342132 6.510000e-25 126.0
24 TraesCS6B01G262400 chr2D 84.821 112 16 1 3194 3305 477395095 477395205 1.820000e-20 111.0
25 TraesCS6B01G262400 chr3B 94.872 156 6 1 391 546 532190564 532190411 6.190000e-60 243.0
26 TraesCS6B01G262400 chr3A 89.308 159 16 1 390 547 454362465 454362307 1.360000e-46 198.0
27 TraesCS6B01G262400 chr5B 85.897 156 19 3 395 549 638398460 638398307 4.960000e-36 163.0
28 TraesCS6B01G262400 chr5B 100.000 86 0 0 3080 3165 62940323 62940408 6.420000e-35 159.0
29 TraesCS6B01G262400 chr5B 97.674 86 2 0 3080 3165 440023747 440023832 1.390000e-31 148.0
30 TraesCS6B01G262400 chr4D 85.350 157 20 3 391 546 404441979 404441825 6.420000e-35 159.0
31 TraesCS6B01G262400 chr7D 95.876 97 3 1 3069 3164 498229934 498229838 8.300000e-34 156.0
32 TraesCS6B01G262400 chr7D 84.076 157 24 1 394 549 364627445 364627289 3.860000e-32 150.0
33 TraesCS6B01G262400 chr4B 96.774 93 2 1 3073 3164 673204466 673204558 2.980000e-33 154.0
34 TraesCS6B01G262400 chr1B 95.833 96 2 2 3080 3174 151363741 151363647 2.980000e-33 154.0
35 TraesCS6B01G262400 chr5D 93.204 103 4 3 3072 3171 381152011 381151909 1.390000e-31 148.0
36 TraesCS6B01G262400 chr5D 87.302 126 11 5 3041 3165 214084030 214083909 8.360000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G262400 chr6B 472609042 472615224 6182 True 11418.0 11418 100.0000 1 6183 1 chr6B.!!$R1 6182
1 TraesCS6B01G262400 chr6D 304734679 304740027 5348 False 2648.0 3821 93.5770 31 5590 3 chr6D.!!$F2 5559
2 TraesCS6B01G262400 chr6A 410578970 410584973 6003 True 1615.2 3398 91.7544 31 6183 5 chr6A.!!$R1 6152
3 TraesCS6B01G262400 chr2A 619765233 619766272 1039 False 223.0 318 86.6545 1155 3305 2 chr2A.!!$F2 2150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 446 0.037326 ATGCTTTTCTCGTCCGAGCA 60.037 50.000 11.71 7.35 46.11 4.26 F
470 486 0.037877 ATCTCTGCATGCTATGGCCC 59.962 55.000 20.33 0.00 37.74 5.80 F
943 960 0.039618 GCATTTTCTCTCCCCCACCA 59.960 55.000 0.00 0.00 0.00 4.17 F
1476 1501 0.104356 TCCCCCAACCTTCCACTACA 60.104 55.000 0.00 0.00 0.00 2.74 F
1750 1982 0.322008 GAGGTGGGCATAGGCATAGC 60.322 60.000 0.15 0.00 43.71 2.97 F
1794 2026 1.220518 TTGGGGCATCAGGGAATCCA 61.221 55.000 0.09 0.00 34.83 3.41 F
2886 3140 1.818674 GGTGGGTTTGGCAGTTATCTG 59.181 52.381 0.00 0.00 43.87 2.90 F
4540 4832 0.108396 TGCTTGTAGGACTTGCTGCA 59.892 50.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2415 0.169672 CAAGCACGCTCCTCCATTTG 59.830 55.000 0.00 0.0 0.00 2.32 R
2426 2662 1.809619 CGTATGCACTGTCACGGGG 60.810 63.158 0.00 0.0 0.00 5.73 R
2749 3002 1.483827 AGGCAGATCGATCAGCAAAGA 59.516 47.619 34.46 0.0 40.59 2.52 R
3418 3709 2.086610 AAGCCCCAGAAAAAGCTCAA 57.913 45.000 0.00 0.0 33.56 3.02 R
3717 4008 0.537653 GAGACTGCCAGGGAACTACC 59.462 60.000 0.00 0.0 40.21 3.18 R
3727 4018 3.031736 GGTTCAGTATAGGAGACTGCCA 58.968 50.000 0.00 0.0 43.37 4.92 R
4734 5026 0.034896 ATAAGGCGCTGGGTATTCGG 59.965 55.000 7.64 0.0 0.00 4.30 R
5756 6135 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.710918 GATGCAAAAGATAATTCTTCGAGATG 57.289 34.615 0.00 0.00 41.42 2.90
26 27 6.489675 TGCAAAAGATAATTCTTCGAGATGC 58.510 36.000 0.00 0.00 41.42 3.91
27 28 5.618798 GCAAAAGATAATTCTTCGAGATGCG 59.381 40.000 0.00 0.00 41.42 4.73
28 29 4.981389 AAGATAATTCTTCGAGATGCGC 57.019 40.909 0.00 0.00 37.69 6.09
29 30 4.250116 AGATAATTCTTCGAGATGCGCT 57.750 40.909 9.73 0.00 40.61 5.92
148 155 6.743110 AGCAAATGAAGAAAGAAAAGAGACC 58.257 36.000 0.00 0.00 0.00 3.85
339 355 5.420725 AGTACATCACATCACCAGCTAAA 57.579 39.130 0.00 0.00 0.00 1.85
385 401 7.700022 AGTAGTAGTAGATCGTTCCTTTGTT 57.300 36.000 0.00 0.00 0.00 2.83
391 407 9.362539 GTAGTAGATCGTTCCTTTGTTGATTAA 57.637 33.333 0.00 0.00 0.00 1.40
392 408 8.252964 AGTAGATCGTTCCTTTGTTGATTAAC 57.747 34.615 0.00 0.00 37.32 2.01
393 409 6.165659 AGATCGTTCCTTTGTTGATTAACG 57.834 37.500 0.00 0.00 39.71 3.18
396 412 6.360844 TCGTTCCTTTGTTGATTAACGAAA 57.639 33.333 5.72 2.39 43.76 3.46
397 413 6.193761 TCGTTCCTTTGTTGATTAACGAAAC 58.806 36.000 5.72 0.45 43.76 2.78
398 414 6.037391 TCGTTCCTTTGTTGATTAACGAAACT 59.963 34.615 5.72 0.00 43.76 2.66
399 415 6.140108 CGTTCCTTTGTTGATTAACGAAACTG 59.860 38.462 4.73 0.00 41.48 3.16
400 416 5.516090 TCCTTTGTTGATTAACGAAACTGC 58.484 37.500 4.73 0.00 39.16 4.40
401 417 5.298276 TCCTTTGTTGATTAACGAAACTGCT 59.702 36.000 4.73 0.00 39.16 4.24
402 418 5.625311 CCTTTGTTGATTAACGAAACTGCTC 59.375 40.000 4.73 0.00 39.16 4.26
403 419 6.371809 TTTGTTGATTAACGAAACTGCTCT 57.628 33.333 0.66 0.00 37.27 4.09
405 421 4.151798 GTTGATTAACGAAACTGCTCTGC 58.848 43.478 0.00 0.00 0.00 4.26
406 422 3.398406 TGATTAACGAAACTGCTCTGCA 58.602 40.909 0.00 0.00 36.92 4.41
407 423 4.002982 TGATTAACGAAACTGCTCTGCAT 58.997 39.130 0.00 0.00 38.13 3.96
408 424 5.175127 TGATTAACGAAACTGCTCTGCATA 58.825 37.500 0.00 0.00 38.13 3.14
409 425 4.921470 TTAACGAAACTGCTCTGCATAC 57.079 40.909 0.00 0.00 38.13 2.39
412 428 2.196749 CGAAACTGCTCTGCATACGAT 58.803 47.619 0.00 0.00 38.13 3.73
413 429 2.034254 CGAAACTGCTCTGCATACGATG 60.034 50.000 0.00 0.00 38.13 3.84
425 441 3.843426 CATACGATGCTTTTCTCGTCC 57.157 47.619 0.37 0.00 44.21 4.79
429 445 0.647925 GATGCTTTTCTCGTCCGAGC 59.352 55.000 11.71 1.66 41.71 5.03
430 446 0.037326 ATGCTTTTCTCGTCCGAGCA 60.037 50.000 11.71 7.35 46.11 4.26
431 447 0.667487 TGCTTTTCTCGTCCGAGCAG 60.667 55.000 11.71 8.48 41.71 4.24
432 448 0.667792 GCTTTTCTCGTCCGAGCAGT 60.668 55.000 11.71 0.00 41.71 4.40
434 450 2.251893 CTTTTCTCGTCCGAGCAGTAC 58.748 52.381 11.71 0.00 41.71 2.73
435 451 0.167470 TTTCTCGTCCGAGCAGTACG 59.833 55.000 11.71 0.00 41.71 3.67
436 452 0.671472 TTCTCGTCCGAGCAGTACGA 60.671 55.000 11.71 0.00 42.83 3.43
437 453 0.461516 TCTCGTCCGAGCAGTACGAT 60.462 55.000 11.71 0.00 43.88 3.73
438 454 1.202452 TCTCGTCCGAGCAGTACGATA 60.202 52.381 11.71 0.00 43.88 2.92
445 461 2.224549 CCGAGCAGTACGATAAGAGAGG 59.775 54.545 0.00 0.00 0.00 3.69
446 462 3.132160 CGAGCAGTACGATAAGAGAGGA 58.868 50.000 0.00 0.00 0.00 3.71
448 464 4.035324 CGAGCAGTACGATAAGAGAGGAAA 59.965 45.833 0.00 0.00 0.00 3.13
449 465 5.278071 CGAGCAGTACGATAAGAGAGGAAAT 60.278 44.000 0.00 0.00 0.00 2.17
450 466 6.079424 AGCAGTACGATAAGAGAGGAAATC 57.921 41.667 0.00 0.00 0.00 2.17
452 468 6.266558 AGCAGTACGATAAGAGAGGAAATCAT 59.733 38.462 0.00 0.00 0.00 2.45
453 469 6.584563 GCAGTACGATAAGAGAGGAAATCATC 59.415 42.308 0.00 0.00 0.00 2.92
454 470 7.523052 GCAGTACGATAAGAGAGGAAATCATCT 60.523 40.741 0.00 0.00 40.00 2.90
462 478 3.478509 AGAGGAAATCATCTCTGCATGC 58.521 45.455 11.82 11.82 38.75 4.06
463 479 3.136809 AGAGGAAATCATCTCTGCATGCT 59.863 43.478 20.33 0.00 38.75 3.79
464 480 4.347292 AGAGGAAATCATCTCTGCATGCTA 59.653 41.667 20.33 6.18 38.75 3.49
465 481 5.013287 AGAGGAAATCATCTCTGCATGCTAT 59.987 40.000 20.33 4.47 38.75 2.97
466 482 5.004448 AGGAAATCATCTCTGCATGCTATG 58.996 41.667 20.33 16.01 0.00 2.23
467 483 4.156190 GGAAATCATCTCTGCATGCTATGG 59.844 45.833 20.33 6.72 0.00 2.74
468 484 2.180432 TCATCTCTGCATGCTATGGC 57.820 50.000 20.33 0.00 39.26 4.40
469 485 1.166129 CATCTCTGCATGCTATGGCC 58.834 55.000 20.33 0.00 37.74 5.36
470 486 0.037877 ATCTCTGCATGCTATGGCCC 59.962 55.000 20.33 0.00 37.74 5.80
471 487 1.149854 CTCTGCATGCTATGGCCCA 59.850 57.895 20.33 0.00 37.74 5.36
472 488 1.152902 TCTGCATGCTATGGCCCAC 60.153 57.895 20.33 0.00 37.74 4.61
473 489 1.454295 CTGCATGCTATGGCCCACA 60.454 57.895 20.33 0.00 37.74 4.17
474 490 1.000107 TGCATGCTATGGCCCACAA 60.000 52.632 20.33 0.00 37.74 3.33
475 491 0.614134 TGCATGCTATGGCCCACAAA 60.614 50.000 20.33 0.00 37.74 2.83
476 492 0.179103 GCATGCTATGGCCCACAAAC 60.179 55.000 11.37 0.00 37.74 2.93
477 493 1.477553 CATGCTATGGCCCACAAACT 58.522 50.000 0.00 0.00 37.74 2.66
478 494 1.135527 CATGCTATGGCCCACAAACTG 59.864 52.381 0.00 0.00 37.74 3.16
479 495 0.403655 TGCTATGGCCCACAAACTGA 59.596 50.000 0.00 0.00 37.74 3.41
480 496 1.202989 TGCTATGGCCCACAAACTGAA 60.203 47.619 0.00 0.00 37.74 3.02
481 497 2.102578 GCTATGGCCCACAAACTGAAT 58.897 47.619 0.00 0.00 0.00 2.57
482 498 2.497273 GCTATGGCCCACAAACTGAATT 59.503 45.455 0.00 0.00 0.00 2.17
483 499 3.699038 GCTATGGCCCACAAACTGAATTA 59.301 43.478 0.00 0.00 0.00 1.40
484 500 4.342092 GCTATGGCCCACAAACTGAATTAT 59.658 41.667 0.00 0.00 0.00 1.28
485 501 5.163416 GCTATGGCCCACAAACTGAATTATT 60.163 40.000 0.00 0.00 0.00 1.40
486 502 5.760484 ATGGCCCACAAACTGAATTATTT 57.240 34.783 0.00 0.00 0.00 1.40
487 503 6.865834 ATGGCCCACAAACTGAATTATTTA 57.134 33.333 0.00 0.00 0.00 1.40
488 504 6.865834 TGGCCCACAAACTGAATTATTTAT 57.134 33.333 0.00 0.00 0.00 1.40
489 505 6.638610 TGGCCCACAAACTGAATTATTTATG 58.361 36.000 0.00 0.00 0.00 1.90
490 506 6.048509 GGCCCACAAACTGAATTATTTATGG 58.951 40.000 0.00 1.38 0.00 2.74
491 507 6.351796 GGCCCACAAACTGAATTATTTATGGT 60.352 38.462 0.00 0.00 0.00 3.55
492 508 7.102993 GCCCACAAACTGAATTATTTATGGTT 58.897 34.615 6.10 0.00 0.00 3.67
493 509 7.064490 GCCCACAAACTGAATTATTTATGGTTG 59.936 37.037 6.10 0.00 0.00 3.77
494 510 8.093927 CCCACAAACTGAATTATTTATGGTTGT 58.906 33.333 6.10 0.00 0.00 3.32
495 511 9.139174 CCACAAACTGAATTATTTATGGTTGTC 57.861 33.333 6.34 0.00 0.00 3.18
496 512 9.912634 CACAAACTGAATTATTTATGGTTGTCT 57.087 29.630 6.34 0.00 0.00 3.41
510 526 9.961265 TTTATGGTTGTCTCTAATCGTATAGTG 57.039 33.333 0.00 0.00 0.00 2.74
511 527 7.584122 ATGGTTGTCTCTAATCGTATAGTGT 57.416 36.000 0.00 0.00 0.00 3.55
512 528 7.400599 TGGTTGTCTCTAATCGTATAGTGTT 57.599 36.000 0.00 0.00 0.00 3.32
513 529 7.255569 TGGTTGTCTCTAATCGTATAGTGTTG 58.744 38.462 0.00 0.00 0.00 3.33
514 530 7.094075 TGGTTGTCTCTAATCGTATAGTGTTGT 60.094 37.037 0.00 0.00 0.00 3.32
515 531 8.400947 GGTTGTCTCTAATCGTATAGTGTTGTA 58.599 37.037 0.00 0.00 0.00 2.41
516 532 9.219497 GTTGTCTCTAATCGTATAGTGTTGTAC 57.781 37.037 0.00 0.00 0.00 2.90
517 533 8.496707 TGTCTCTAATCGTATAGTGTTGTACA 57.503 34.615 0.00 0.00 0.00 2.90
518 534 8.610035 TGTCTCTAATCGTATAGTGTTGTACAG 58.390 37.037 0.00 0.00 0.00 2.74
519 535 8.068977 GTCTCTAATCGTATAGTGTTGTACAGG 58.931 40.741 0.00 0.00 0.00 4.00
520 536 7.989170 TCTCTAATCGTATAGTGTTGTACAGGA 59.011 37.037 0.00 0.00 0.00 3.86
521 537 8.510243 TCTAATCGTATAGTGTTGTACAGGAA 57.490 34.615 0.00 0.00 0.00 3.36
522 538 8.400947 TCTAATCGTATAGTGTTGTACAGGAAC 58.599 37.037 0.00 0.00 0.00 3.62
523 539 6.770746 ATCGTATAGTGTTGTACAGGAACT 57.229 37.500 10.75 10.75 43.88 3.01
524 540 6.579666 TCGTATAGTGTTGTACAGGAACTT 57.420 37.500 11.09 4.57 34.60 2.66
525 541 6.384224 TCGTATAGTGTTGTACAGGAACTTG 58.616 40.000 11.09 0.00 34.60 3.16
526 542 6.016024 TCGTATAGTGTTGTACAGGAACTTGT 60.016 38.462 11.09 0.00 34.60 3.16
527 543 6.307318 CGTATAGTGTTGTACAGGAACTTGTC 59.693 42.308 11.09 3.97 34.60 3.18
538 554 2.202566 GGAACTTGTCCTACGCATAGC 58.797 52.381 0.00 0.00 43.98 2.97
539 555 2.418197 GGAACTTGTCCTACGCATAGCA 60.418 50.000 0.00 0.00 43.98 3.49
540 556 3.259064 GAACTTGTCCTACGCATAGCAA 58.741 45.455 0.00 0.00 0.00 3.91
541 557 2.893637 ACTTGTCCTACGCATAGCAAG 58.106 47.619 5.86 5.86 35.88 4.01
542 558 2.205074 CTTGTCCTACGCATAGCAAGG 58.795 52.381 0.79 0.00 34.05 3.61
543 559 1.191535 TGTCCTACGCATAGCAAGGT 58.808 50.000 7.12 0.00 34.31 3.50
544 560 1.553248 TGTCCTACGCATAGCAAGGTT 59.447 47.619 7.12 0.00 34.31 3.50
545 561 2.202566 GTCCTACGCATAGCAAGGTTC 58.797 52.381 7.12 0.92 34.31 3.62
546 562 1.202371 TCCTACGCATAGCAAGGTTCG 60.202 52.381 7.12 0.00 34.31 3.95
547 563 1.470979 CCTACGCATAGCAAGGTTCGT 60.471 52.381 0.00 0.00 29.91 3.85
548 564 2.268298 CTACGCATAGCAAGGTTCGTT 58.732 47.619 0.00 0.00 0.00 3.85
549 565 0.796312 ACGCATAGCAAGGTTCGTTG 59.204 50.000 1.56 1.56 0.00 4.10
550 566 1.075542 CGCATAGCAAGGTTCGTTGA 58.924 50.000 9.02 0.00 0.00 3.18
551 567 1.665679 CGCATAGCAAGGTTCGTTGAT 59.334 47.619 9.02 5.51 0.00 2.57
552 568 2.095853 CGCATAGCAAGGTTCGTTGATT 59.904 45.455 9.02 0.42 0.00 2.57
553 569 3.308595 CGCATAGCAAGGTTCGTTGATTA 59.691 43.478 9.02 2.29 0.00 1.75
554 570 4.201773 CGCATAGCAAGGTTCGTTGATTAA 60.202 41.667 9.02 0.00 0.00 1.40
581 597 7.445402 AGAGAGAGAGAGATTACAATCTGCTAC 59.555 40.741 9.16 5.20 45.39 3.58
582 598 7.290061 AGAGAGAGAGATTACAATCTGCTACT 58.710 38.462 9.16 0.56 45.39 2.57
583 599 8.436778 AGAGAGAGAGATTACAATCTGCTACTA 58.563 37.037 9.16 0.00 45.39 1.82
584 600 8.391075 AGAGAGAGATTACAATCTGCTACTAC 57.609 38.462 9.16 0.00 45.39 2.73
585 601 7.172532 AGAGAGAGATTACAATCTGCTACTACG 59.827 40.741 9.16 0.00 45.39 3.51
586 602 6.768861 AGAGAGATTACAATCTGCTACTACGT 59.231 38.462 9.16 0.00 45.39 3.57
587 603 7.932491 AGAGAGATTACAATCTGCTACTACGTA 59.068 37.037 9.16 0.00 45.39 3.57
588 604 8.624367 AGAGATTACAATCTGCTACTACGTAT 57.376 34.615 9.16 0.00 45.39 3.06
589 605 9.069082 AGAGATTACAATCTGCTACTACGTATT 57.931 33.333 9.16 0.00 45.39 1.89
621 637 3.071874 TGATTTGATTGAGGAAGGCGT 57.928 42.857 0.00 0.00 0.00 5.68
623 639 1.438651 TTTGATTGAGGAAGGCGTCG 58.561 50.000 0.00 0.00 0.00 5.12
624 640 1.019278 TTGATTGAGGAAGGCGTCGC 61.019 55.000 9.22 9.22 0.00 5.19
625 641 1.153549 GATTGAGGAAGGCGTCGCT 60.154 57.895 18.11 0.00 0.00 4.93
626 642 0.102481 GATTGAGGAAGGCGTCGCTA 59.898 55.000 18.11 0.00 0.00 4.26
627 643 0.179108 ATTGAGGAAGGCGTCGCTAC 60.179 55.000 18.11 8.56 0.00 3.58
628 644 1.529152 TTGAGGAAGGCGTCGCTACA 61.529 55.000 18.11 5.91 0.00 2.74
629 645 1.516603 GAGGAAGGCGTCGCTACAC 60.517 63.158 18.11 5.83 0.00 2.90
630 646 2.508663 GGAAGGCGTCGCTACACC 60.509 66.667 18.11 11.64 0.00 4.16
631 647 2.260434 GAAGGCGTCGCTACACCA 59.740 61.111 18.11 0.00 29.56 4.17
632 648 1.153628 GAAGGCGTCGCTACACCAT 60.154 57.895 18.11 0.00 29.56 3.55
633 649 0.101759 GAAGGCGTCGCTACACCATA 59.898 55.000 18.11 0.00 29.56 2.74
649 665 1.941325 CATACGTGGAAGGAAGGAGC 58.059 55.000 0.00 0.00 0.00 4.70
668 684 1.625616 CTCGATAAGAAACGGTGCGT 58.374 50.000 0.00 0.00 43.97 5.24
709 725 3.599343 CATCCTGGAGACGACAAATCAA 58.401 45.455 1.52 0.00 0.00 2.57
710 726 3.762407 TCCTGGAGACGACAAATCAAA 57.238 42.857 0.00 0.00 0.00 2.69
711 727 4.286297 TCCTGGAGACGACAAATCAAAT 57.714 40.909 0.00 0.00 0.00 2.32
712 728 4.253685 TCCTGGAGACGACAAATCAAATC 58.746 43.478 0.00 0.00 0.00 2.17
713 729 4.002982 CCTGGAGACGACAAATCAAATCA 58.997 43.478 0.00 0.00 0.00 2.57
738 754 1.979619 AATACTACCCGGCCACCAGC 61.980 60.000 2.24 0.00 42.60 4.85
762 779 3.546543 GCCCGTCCGATCCCATCA 61.547 66.667 0.00 0.00 0.00 3.07
764 781 2.027605 CCGTCCGATCCCATCACG 59.972 66.667 0.00 0.00 0.00 4.35
855 872 4.895297 CCACACCCTCAATAAATATTGCCT 59.105 41.667 8.05 0.00 42.06 4.75
938 955 0.396278 CCCCAGCATTTTCTCTCCCC 60.396 60.000 0.00 0.00 0.00 4.81
939 956 0.396278 CCCAGCATTTTCTCTCCCCC 60.396 60.000 0.00 0.00 0.00 5.40
940 957 0.332632 CCAGCATTTTCTCTCCCCCA 59.667 55.000 0.00 0.00 0.00 4.96
941 958 1.467920 CAGCATTTTCTCTCCCCCAC 58.532 55.000 0.00 0.00 0.00 4.61
942 959 0.332972 AGCATTTTCTCTCCCCCACC 59.667 55.000 0.00 0.00 0.00 4.61
943 960 0.039618 GCATTTTCTCTCCCCCACCA 59.960 55.000 0.00 0.00 0.00 4.17
1164 1184 4.459089 GCCTCGGTGGAGCAGGTC 62.459 72.222 0.00 0.00 39.06 3.85
1476 1501 0.104356 TCCCCCAACCTTCCACTACA 60.104 55.000 0.00 0.00 0.00 2.74
1525 1752 1.165270 GCGTGCTAGGAACATTGGTT 58.835 50.000 0.00 0.00 40.76 3.67
1526 1753 1.539827 GCGTGCTAGGAACATTGGTTT 59.460 47.619 0.00 0.00 37.36 3.27
1597 1824 2.098607 TCGTGCTCTTACCTTCGTATGG 59.901 50.000 0.00 0.00 0.00 2.74
1607 1834 6.647895 TCTTACCTTCGTATGGAAAGTTTGTC 59.352 38.462 0.00 0.00 31.81 3.18
1608 1835 4.969484 ACCTTCGTATGGAAAGTTTGTCT 58.031 39.130 0.00 0.00 33.34 3.41
1609 1836 4.755123 ACCTTCGTATGGAAAGTTTGTCTG 59.245 41.667 0.00 0.00 33.34 3.51
1610 1837 4.994852 CCTTCGTATGGAAAGTTTGTCTGA 59.005 41.667 0.00 0.00 33.34 3.27
1611 1838 5.107065 CCTTCGTATGGAAAGTTTGTCTGAC 60.107 44.000 0.00 0.00 33.34 3.51
1744 1976 1.343069 GAGGTAGAGGTGGGCATAGG 58.657 60.000 0.00 0.00 0.00 2.57
1745 1977 0.764752 AGGTAGAGGTGGGCATAGGC 60.765 60.000 0.00 0.00 40.13 3.93
1746 1978 1.054406 GGTAGAGGTGGGCATAGGCA 61.054 60.000 0.15 0.00 43.71 4.75
1748 1980 2.257207 GTAGAGGTGGGCATAGGCATA 58.743 52.381 0.15 0.00 43.71 3.14
1749 1981 1.356124 AGAGGTGGGCATAGGCATAG 58.644 55.000 0.15 0.00 43.71 2.23
1750 1982 0.322008 GAGGTGGGCATAGGCATAGC 60.322 60.000 0.15 0.00 43.71 2.97
1751 1983 1.672356 GGTGGGCATAGGCATAGCG 60.672 63.158 0.15 0.00 43.71 4.26
1752 1984 1.371183 GTGGGCATAGGCATAGCGA 59.629 57.895 0.15 0.00 43.71 4.93
1794 2026 1.220518 TTGGGGCATCAGGGAATCCA 61.221 55.000 0.09 0.00 34.83 3.41
1914 2148 4.625607 AGAAACTTCTTGGATTCGGACT 57.374 40.909 0.00 0.00 32.55 3.85
1966 2200 2.351418 GCAGTGTGCCTTTTGTTTTTCC 59.649 45.455 0.00 0.00 37.42 3.13
1978 2212 6.019075 CCTTTTGTTTTTCCAATCTTCCGAAC 60.019 38.462 0.00 0.00 0.00 3.95
2179 2415 2.072298 CTAGTGTTGAGGACAAGCTGC 58.928 52.381 0.00 0.00 40.65 5.25
2398 2634 6.280643 TGGGAATACTTTCATGTGATAGTCG 58.719 40.000 8.97 0.00 37.48 4.18
2463 2699 2.725723 ACGCGTTGCTGATTTGAAAATG 59.274 40.909 5.58 0.00 0.00 2.32
2532 2780 4.333649 TCTTGTCAGCAGCTTTACATATGC 59.666 41.667 1.58 0.00 38.97 3.14
2546 2794 8.239998 GCTTTACATATGCTTCTGTTTCTCTTT 58.760 33.333 1.58 0.00 0.00 2.52
2646 2899 7.309133 GGTCATGGGATGATTCGCAAAAATATA 60.309 37.037 0.00 0.00 46.47 0.86
2722 2975 9.638239 GCTTGATTAATTTCTGTAATTGTGGAA 57.362 29.630 2.92 0.00 37.07 3.53
2744 2997 7.092802 TGGAAAGTACATTAGCACATAACCCTA 60.093 37.037 0.00 0.00 0.00 3.53
2788 3041 3.214328 CCTGCCTTGTGAAACTGTACTT 58.786 45.455 0.00 0.00 38.04 2.24
2803 3056 9.582431 GAAACTGTACTTGCTAGTATGTCATTA 57.418 33.333 11.20 0.00 39.01 1.90
2809 3062 6.348498 ACTTGCTAGTATGTCATTATGCACA 58.652 36.000 0.00 0.00 31.21 4.57
2842 3095 4.870123 TTGGCTAATTGACATGTTGCTT 57.130 36.364 0.00 0.00 31.11 3.91
2844 3097 5.212532 TGGCTAATTGACATGTTGCTTTT 57.787 34.783 0.00 0.00 0.00 2.27
2886 3140 1.818674 GGTGGGTTTGGCAGTTATCTG 59.181 52.381 0.00 0.00 43.87 2.90
2889 3143 3.320826 GTGGGTTTGGCAGTTATCTGTTT 59.679 43.478 2.85 0.00 43.05 2.83
2935 3189 1.959042 AGCAACGGAGGCTAATGATG 58.041 50.000 0.00 0.00 40.47 3.07
2994 3248 2.104963 AGGCTTTCTTTTCCTCGTCAGT 59.895 45.455 0.00 0.00 0.00 3.41
3012 3266 5.925969 CGTCAGTTTTATTGGGATTTTTGCT 59.074 36.000 0.00 0.00 0.00 3.91
3036 3290 3.420893 TGTGCCCATGAGAAAAGTAAGG 58.579 45.455 0.00 0.00 0.00 2.69
3089 3343 7.521871 ACTAAATAACTGTATACTCCCTCCG 57.478 40.000 4.17 0.00 0.00 4.63
3090 3344 7.065504 ACTAAATAACTGTATACTCCCTCCGT 58.934 38.462 4.17 0.00 0.00 4.69
3091 3345 8.220559 ACTAAATAACTGTATACTCCCTCCGTA 58.779 37.037 4.17 0.00 0.00 4.02
3092 3346 7.902920 AAATAACTGTATACTCCCTCCGTAA 57.097 36.000 4.17 0.00 0.00 3.18
3093 3347 7.902920 AATAACTGTATACTCCCTCCGTAAA 57.097 36.000 4.17 0.00 0.00 2.01
3094 3348 5.848833 AACTGTATACTCCCTCCGTAAAG 57.151 43.478 4.17 0.00 0.00 1.85
3095 3349 5.121380 ACTGTATACTCCCTCCGTAAAGA 57.879 43.478 4.17 0.00 0.00 2.52
3096 3350 5.513233 ACTGTATACTCCCTCCGTAAAGAA 58.487 41.667 4.17 0.00 0.00 2.52
3097 3351 5.954150 ACTGTATACTCCCTCCGTAAAGAAA 59.046 40.000 4.17 0.00 0.00 2.52
3098 3352 6.610425 ACTGTATACTCCCTCCGTAAAGAAAT 59.390 38.462 4.17 0.00 0.00 2.17
3099 3353 7.781693 ACTGTATACTCCCTCCGTAAAGAAATA 59.218 37.037 4.17 0.00 0.00 1.40
3100 3354 8.716674 TGTATACTCCCTCCGTAAAGAAATAT 57.283 34.615 4.17 0.00 0.00 1.28
3101 3355 9.812347 TGTATACTCCCTCCGTAAAGAAATATA 57.188 33.333 4.17 0.00 0.00 0.86
3104 3358 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3105 3359 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3106 3360 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3107 3361 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3108 3362 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3109 3363 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3110 3364 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3111 3365 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3112 3366 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3113 3367 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3125 3379 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3126 3380 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3159 3413 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
3160 3414 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
3161 3415 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
3377 3668 2.074576 CTGACAGCAGTGACCATCTTG 58.925 52.381 0.00 0.00 37.37 3.02
3418 3709 4.969359 AGATACTGGGCAGGTACTTTATGT 59.031 41.667 0.00 0.00 34.60 2.29
3529 3820 8.079211 AGCTTACAAGAATAGGTCAGTAATGA 57.921 34.615 0.00 0.00 32.16 2.57
3533 3824 9.817809 TTACAAGAATAGGTCAGTAATGACATC 57.182 33.333 23.39 15.05 40.38 3.06
3717 4008 4.732285 AGTGTCTGAACATTTGCTTACG 57.268 40.909 0.00 0.00 37.81 3.18
3726 4017 3.340928 ACATTTGCTTACGGTAGTTCCC 58.659 45.455 0.00 0.00 0.00 3.97
3727 4018 3.008704 ACATTTGCTTACGGTAGTTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
3990 4282 4.512944 TGATCTTGCACTGTCTTCACTTTC 59.487 41.667 0.00 0.00 0.00 2.62
4114 4406 1.758862 GCTTTGATTCTTGGGGATGGG 59.241 52.381 0.00 0.00 0.00 4.00
4115 4407 1.758862 CTTTGATTCTTGGGGATGGGC 59.241 52.381 0.00 0.00 0.00 5.36
4117 4409 1.905839 TGATTCTTGGGGATGGGCTA 58.094 50.000 0.00 0.00 0.00 3.93
4403 4695 2.168458 TGCCTATGTGGTAGCACCTA 57.832 50.000 21.65 15.05 39.58 3.08
4489 4781 4.935885 CAAGCTTGCTATCTTCGTCTTT 57.064 40.909 14.65 0.00 0.00 2.52
4537 4829 1.543429 GGTGTGCTTGTAGGACTTGCT 60.543 52.381 0.20 0.00 37.46 3.91
4540 4832 0.108396 TGCTTGTAGGACTTGCTGCA 59.892 50.000 0.00 0.00 0.00 4.41
4699 4991 1.477558 CCCTGTGTCTTCTGGCTGTTT 60.478 52.381 0.00 0.00 0.00 2.83
4725 5017 2.456119 CCTTCAGCGACATCGGCAC 61.456 63.158 3.08 0.00 40.23 5.01
4734 5026 4.465512 CATCGGCACAAGCGGCAC 62.466 66.667 1.45 0.00 43.41 5.01
4927 5219 1.152368 GCTCCCTATGGCAATGGCT 59.848 57.895 8.59 0.00 40.87 4.75
5202 5525 2.676471 GGGACAACGGCAAGCCAT 60.676 61.111 12.19 0.00 35.37 4.40
5220 5543 3.589881 GGCCACGCATCAGCATCC 61.590 66.667 0.00 0.00 42.27 3.51
5232 5555 4.670992 GCATCAGCATCCGCATGTAATTAG 60.671 45.833 0.00 0.00 42.27 1.73
5239 5562 2.434336 TCCGCATGTAATTAGAGCCACT 59.566 45.455 0.00 0.00 0.00 4.00
5273 5596 6.461509 CCACTTGTTTTGTAGAAAAGCCAGAT 60.462 38.462 0.00 0.00 31.57 2.90
5342 5665 2.607187 ACGATTGTAGCTGTTCCTTCG 58.393 47.619 0.00 0.11 0.00 3.79
5345 5668 1.795768 TTGTAGCTGTTCCTTCGCAG 58.204 50.000 0.00 0.00 35.93 5.18
5400 5724 8.517878 GGCAGAACGATATAGTATTAGGTGTAA 58.482 37.037 0.00 0.00 0.00 2.41
5478 5826 5.418840 ACATGTTCCTCCATAACAATGTTCC 59.581 40.000 0.22 0.00 40.05 3.62
5564 5913 6.258068 CGGTTTAGTGCATTTTTACCCAAAAA 59.742 34.615 0.00 0.00 45.22 1.94
5584 5934 3.857157 AAAAAGCTCCGGCCTATGATA 57.143 42.857 0.00 0.00 39.73 2.15
5674 6024 1.066573 GCTCTATCATGCGGGTGCTAT 60.067 52.381 0.00 0.00 43.34 2.97
5676 6026 2.495270 CTCTATCATGCGGGTGCTATCT 59.505 50.000 0.00 0.00 43.34 1.98
5677 6027 2.899900 TCTATCATGCGGGTGCTATCTT 59.100 45.455 0.00 0.00 43.34 2.40
5678 6028 2.175878 ATCATGCGGGTGCTATCTTC 57.824 50.000 0.00 0.00 43.34 2.87
5679 6029 1.123077 TCATGCGGGTGCTATCTTCT 58.877 50.000 0.00 0.00 43.34 2.85
5681 6031 2.092968 TCATGCGGGTGCTATCTTCTTT 60.093 45.455 0.00 0.00 43.34 2.52
5682 6032 1.737838 TGCGGGTGCTATCTTCTTTG 58.262 50.000 0.00 0.00 43.34 2.77
5721 6076 0.100503 GTGCGTTGGAACTGCACTTT 59.899 50.000 21.51 0.00 46.10 2.66
5739 6094 3.180387 ACTTTTTAGTTCGTCGTGCGTAC 59.820 43.478 0.00 0.00 42.13 3.67
5755 6134 2.095919 GCGTACAACTCAAACCATCCAC 60.096 50.000 0.00 0.00 0.00 4.02
5756 6135 3.135225 CGTACAACTCAAACCATCCACA 58.865 45.455 0.00 0.00 0.00 4.17
5757 6136 3.059188 CGTACAACTCAAACCATCCACAC 60.059 47.826 0.00 0.00 0.00 3.82
5758 6137 3.011566 ACAACTCAAACCATCCACACA 57.988 42.857 0.00 0.00 0.00 3.72
5759 6138 2.687935 ACAACTCAAACCATCCACACAC 59.312 45.455 0.00 0.00 0.00 3.82
5760 6139 2.687425 CAACTCAAACCATCCACACACA 59.313 45.455 0.00 0.00 0.00 3.72
5761 6140 2.297701 ACTCAAACCATCCACACACAC 58.702 47.619 0.00 0.00 0.00 3.82
5762 6141 2.296792 CTCAAACCATCCACACACACA 58.703 47.619 0.00 0.00 0.00 3.72
5763 6142 2.020720 TCAAACCATCCACACACACAC 58.979 47.619 0.00 0.00 0.00 3.82
5837 6219 0.415429 ACCTCATCCCTCAGTGACCT 59.585 55.000 0.00 0.00 0.00 3.85
5838 6220 1.118838 CCTCATCCCTCAGTGACCTC 58.881 60.000 0.00 0.00 0.00 3.85
5839 6221 1.342874 CCTCATCCCTCAGTGACCTCT 60.343 57.143 0.00 0.00 0.00 3.69
5840 6222 1.755959 CTCATCCCTCAGTGACCTCTG 59.244 57.143 0.00 0.00 36.85 3.35
5841 6223 0.177604 CATCCCTCAGTGACCTCTGC 59.822 60.000 0.00 0.00 35.63 4.26
5921 6303 4.109675 CCCATCACCCGTCCCCAC 62.110 72.222 0.00 0.00 0.00 4.61
5922 6304 3.326578 CCATCACCCGTCCCCACA 61.327 66.667 0.00 0.00 0.00 4.17
5924 6306 3.702048 ATCACCCGTCCCCACACG 61.702 66.667 0.00 0.00 39.61 4.49
5949 6370 1.372683 CCATACCTCGCCATCCCTG 59.627 63.158 0.00 0.00 0.00 4.45
6002 6423 4.475135 GTCCCCGCCAAGCTCCTC 62.475 72.222 0.00 0.00 0.00 3.71
6005 6426 4.479993 CCCGCCAAGCTCCTCCTG 62.480 72.222 0.00 0.00 0.00 3.86
6009 6430 3.710722 CCAAGCTCCTCCTGCCGT 61.711 66.667 0.00 0.00 0.00 5.68
6025 6454 1.041447 CCGTCTCCCCCAGTCGTATT 61.041 60.000 0.00 0.00 32.37 1.89
6055 6484 5.801350 GCAGTTTTACATCATCTGCTACA 57.199 39.130 7.98 0.00 45.14 2.74
6124 6553 0.250295 TCTTTTGAGGTGCACCGAGG 60.250 55.000 29.68 16.83 42.08 4.63
6129 6558 0.036388 TGAGGTGCACCGAGGATTTC 60.036 55.000 29.68 19.64 42.08 2.17
6176 6605 5.347342 TGATATGCATTTTTAGGGCAAACG 58.653 37.500 3.54 0.00 41.43 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.323177 GCATCTCGAAGAATTATCTTTTGCATC 59.677 37.037 0.00 0.00 45.91 3.91
1 2 7.137426 GCATCTCGAAGAATTATCTTTTGCAT 58.863 34.615 0.00 0.00 45.91 3.96
2 3 6.489675 GCATCTCGAAGAATTATCTTTTGCA 58.510 36.000 0.00 0.00 45.91 4.08
3 4 5.618798 CGCATCTCGAAGAATTATCTTTTGC 59.381 40.000 0.00 0.00 45.91 3.68
4 5 5.618798 GCGCATCTCGAAGAATTATCTTTTG 59.381 40.000 0.30 0.00 45.91 2.44
5 6 5.525378 AGCGCATCTCGAAGAATTATCTTTT 59.475 36.000 11.47 0.00 45.91 2.27
6 7 5.053145 AGCGCATCTCGAAGAATTATCTTT 58.947 37.500 11.47 0.00 45.91 2.52
7 8 4.683781 GAGCGCATCTCGAAGAATTATCTT 59.316 41.667 11.47 0.00 39.17 2.40
8 9 4.233789 GAGCGCATCTCGAAGAATTATCT 58.766 43.478 11.47 0.00 41.67 1.98
9 10 3.366422 GGAGCGCATCTCGAAGAATTATC 59.634 47.826 11.47 0.00 42.82 1.75
10 11 3.243873 TGGAGCGCATCTCGAAGAATTAT 60.244 43.478 11.47 0.00 42.82 1.28
11 12 2.100749 TGGAGCGCATCTCGAAGAATTA 59.899 45.455 11.47 0.00 42.82 1.40
12 13 1.134699 TGGAGCGCATCTCGAAGAATT 60.135 47.619 11.47 0.00 42.82 2.17
13 14 0.461548 TGGAGCGCATCTCGAAGAAT 59.538 50.000 11.47 0.00 42.82 2.40
14 15 0.461548 ATGGAGCGCATCTCGAAGAA 59.538 50.000 11.47 0.00 42.82 2.52
15 16 0.249197 CATGGAGCGCATCTCGAAGA 60.249 55.000 11.47 0.00 42.82 2.87
16 17 0.529337 ACATGGAGCGCATCTCGAAG 60.529 55.000 11.47 0.00 42.82 3.79
17 18 0.108186 AACATGGAGCGCATCTCGAA 60.108 50.000 11.47 0.00 42.82 3.71
18 19 0.807275 CAACATGGAGCGCATCTCGA 60.807 55.000 11.47 0.00 42.82 4.04
19 20 1.640069 CAACATGGAGCGCATCTCG 59.360 57.895 11.47 0.00 42.82 4.04
20 21 1.354506 GCAACATGGAGCGCATCTC 59.645 57.895 11.47 0.00 41.15 2.75
21 22 3.506108 GCAACATGGAGCGCATCT 58.494 55.556 11.47 0.00 0.00 2.90
27 28 4.505217 CGCGACGCAACATGGAGC 62.505 66.667 21.35 0.00 0.00 4.70
28 29 3.071459 GACGCGACGCAACATGGAG 62.071 63.158 21.35 2.95 0.00 3.86
29 30 3.109547 GACGCGACGCAACATGGA 61.110 61.111 21.35 0.00 0.00 3.41
132 139 2.835027 ACGCGGTCTCTTTTCTTTCTT 58.165 42.857 12.47 0.00 0.00 2.52
133 140 2.528041 ACGCGGTCTCTTTTCTTTCT 57.472 45.000 12.47 0.00 0.00 2.52
148 155 0.713718 GCGCATAACATTCGTACGCG 60.714 55.000 11.24 3.53 39.08 6.01
190 202 1.000607 GTGTTCACGCTGAGGTCTGTA 60.001 52.381 0.00 0.00 0.00 2.74
218 230 3.496155 GTTTACGTACGTCTTGGGAGAG 58.504 50.000 26.53 0.00 31.07 3.20
300 313 0.820871 ACTTGATCCCAGCTCTCGTC 59.179 55.000 0.00 0.00 0.00 4.20
365 381 7.829378 AATCAACAAAGGAACGATCTACTAC 57.171 36.000 0.00 0.00 0.00 2.73
368 384 7.062605 TCGTTAATCAACAAAGGAACGATCTAC 59.937 37.037 3.75 0.00 42.45 2.59
369 385 7.092079 TCGTTAATCAACAAAGGAACGATCTA 58.908 34.615 3.75 0.00 42.45 1.98
370 386 5.929992 TCGTTAATCAACAAAGGAACGATCT 59.070 36.000 3.75 0.00 42.45 2.75
381 397 5.747565 CAGAGCAGTTTCGTTAATCAACAA 58.252 37.500 0.00 0.00 34.05 2.83
385 401 3.398406 TGCAGAGCAGTTTCGTTAATCA 58.602 40.909 0.00 0.00 33.32 2.57
391 407 1.067846 TCGTATGCAGAGCAGTTTCGT 60.068 47.619 0.00 0.00 43.65 3.85
392 408 1.629013 TCGTATGCAGAGCAGTTTCG 58.371 50.000 0.00 0.60 43.65 3.46
393 409 3.582444 CATCGTATGCAGAGCAGTTTC 57.418 47.619 0.00 0.00 43.65 2.78
409 425 0.917259 CTCGGACGAGAAAAGCATCG 59.083 55.000 16.15 0.00 44.53 3.84
412 428 0.667487 CTGCTCGGACGAGAAAAGCA 60.667 55.000 24.30 14.33 44.53 3.91
413 429 0.667792 ACTGCTCGGACGAGAAAAGC 60.668 55.000 24.30 10.51 44.53 3.51
414 430 2.251893 GTACTGCTCGGACGAGAAAAG 58.748 52.381 24.30 18.30 44.53 2.27
415 431 1.400629 CGTACTGCTCGGACGAGAAAA 60.401 52.381 24.30 8.62 44.53 2.29
416 432 0.167470 CGTACTGCTCGGACGAGAAA 59.833 55.000 24.30 10.94 44.53 2.52
417 433 0.671472 TCGTACTGCTCGGACGAGAA 60.671 55.000 24.30 13.95 44.53 2.87
418 434 1.079612 TCGTACTGCTCGGACGAGA 60.080 57.895 24.30 9.29 44.53 4.04
419 435 3.482809 TCGTACTGCTCGGACGAG 58.517 61.111 16.77 16.77 40.45 4.18
421 437 1.596260 TCTTATCGTACTGCTCGGACG 59.404 52.381 5.17 5.17 37.93 4.79
423 439 3.132160 CTCTCTTATCGTACTGCTCGGA 58.868 50.000 0.00 0.00 0.00 4.55
424 440 2.224549 CCTCTCTTATCGTACTGCTCGG 59.775 54.545 0.00 0.00 0.00 4.63
425 441 3.132160 TCCTCTCTTATCGTACTGCTCG 58.868 50.000 0.00 0.00 0.00 5.03
429 445 7.881142 AGATGATTTCCTCTCTTATCGTACTG 58.119 38.462 0.00 0.00 0.00 2.74
430 446 7.942341 AGAGATGATTTCCTCTCTTATCGTACT 59.058 37.037 8.93 0.00 44.51 2.73
431 447 8.020819 CAGAGATGATTTCCTCTCTTATCGTAC 58.979 40.741 11.32 0.00 44.51 3.67
432 448 7.308891 GCAGAGATGATTTCCTCTCTTATCGTA 60.309 40.741 11.32 0.00 44.51 3.43
434 450 5.863397 GCAGAGATGATTTCCTCTCTTATCG 59.137 44.000 11.32 4.07 44.51 2.92
435 451 6.757237 TGCAGAGATGATTTCCTCTCTTATC 58.243 40.000 11.32 6.28 44.51 1.75
436 452 6.744175 TGCAGAGATGATTTCCTCTCTTAT 57.256 37.500 11.32 0.00 44.51 1.73
437 453 6.522946 CATGCAGAGATGATTTCCTCTCTTA 58.477 40.000 11.32 6.07 44.51 2.10
438 454 5.369833 CATGCAGAGATGATTTCCTCTCTT 58.630 41.667 11.32 0.00 44.51 2.85
445 461 4.379603 GCCATAGCATGCAGAGATGATTTC 60.380 45.833 21.98 4.65 39.53 2.17
446 462 3.506455 GCCATAGCATGCAGAGATGATTT 59.494 43.478 21.98 0.00 39.53 2.17
448 464 2.618302 GGCCATAGCATGCAGAGATGAT 60.618 50.000 21.98 0.00 42.56 2.45
449 465 1.271217 GGCCATAGCATGCAGAGATGA 60.271 52.381 21.98 0.00 42.56 2.92
450 466 1.166129 GGCCATAGCATGCAGAGATG 58.834 55.000 21.98 16.12 42.56 2.90
452 468 1.347243 TGGGCCATAGCATGCAGAGA 61.347 55.000 21.98 1.93 42.56 3.10
453 469 1.149854 TGGGCCATAGCATGCAGAG 59.850 57.895 21.98 8.39 42.56 3.35
454 470 1.152902 GTGGGCCATAGCATGCAGA 60.153 57.895 21.98 7.72 42.56 4.26
455 471 1.038681 TTGTGGGCCATAGCATGCAG 61.039 55.000 21.98 9.16 42.56 4.41
456 472 0.614134 TTTGTGGGCCATAGCATGCA 60.614 50.000 21.98 6.36 42.56 3.96
457 473 0.179103 GTTTGTGGGCCATAGCATGC 60.179 55.000 10.70 10.51 42.56 4.06
458 474 1.135527 CAGTTTGTGGGCCATAGCATG 59.864 52.381 10.70 2.79 42.56 4.06
459 475 1.005805 TCAGTTTGTGGGCCATAGCAT 59.994 47.619 10.70 0.00 42.56 3.79
460 476 0.403655 TCAGTTTGTGGGCCATAGCA 59.596 50.000 10.70 0.00 42.56 3.49
461 477 1.544724 TTCAGTTTGTGGGCCATAGC 58.455 50.000 10.70 4.00 38.76 2.97
462 478 6.469782 AATAATTCAGTTTGTGGGCCATAG 57.530 37.500 10.70 0.00 0.00 2.23
463 479 6.865834 AAATAATTCAGTTTGTGGGCCATA 57.134 33.333 10.70 3.21 0.00 2.74
464 480 5.760484 AAATAATTCAGTTTGTGGGCCAT 57.240 34.783 10.70 0.00 0.00 4.40
465 481 6.351711 CCATAAATAATTCAGTTTGTGGGCCA 60.352 38.462 0.00 0.00 40.68 5.36
466 482 6.048509 CCATAAATAATTCAGTTTGTGGGCC 58.951 40.000 13.94 0.00 40.68 5.80
467 483 6.639563 ACCATAAATAATTCAGTTTGTGGGC 58.360 36.000 20.47 0.00 45.40 5.36
468 484 8.093927 ACAACCATAAATAATTCAGTTTGTGGG 58.906 33.333 20.47 12.11 45.40 4.61
469 485 9.139174 GACAACCATAAATAATTCAGTTTGTGG 57.861 33.333 17.44 17.44 46.08 4.17
470 486 9.912634 AGACAACCATAAATAATTCAGTTTGTG 57.087 29.630 0.00 0.00 0.00 3.33
484 500 9.961265 CACTATACGATTAGAGACAACCATAAA 57.039 33.333 0.00 0.00 0.00 1.40
485 501 9.128404 ACACTATACGATTAGAGACAACCATAA 57.872 33.333 0.00 0.00 0.00 1.90
486 502 8.687292 ACACTATACGATTAGAGACAACCATA 57.313 34.615 0.00 0.00 0.00 2.74
487 503 7.584122 ACACTATACGATTAGAGACAACCAT 57.416 36.000 0.00 0.00 0.00 3.55
488 504 7.094075 ACAACACTATACGATTAGAGACAACCA 60.094 37.037 0.00 0.00 0.00 3.67
489 505 7.256286 ACAACACTATACGATTAGAGACAACC 58.744 38.462 0.00 0.00 0.00 3.77
490 506 9.219497 GTACAACACTATACGATTAGAGACAAC 57.781 37.037 0.00 0.00 0.00 3.32
491 507 8.949177 TGTACAACACTATACGATTAGAGACAA 58.051 33.333 0.00 0.00 0.00 3.18
492 508 8.496707 TGTACAACACTATACGATTAGAGACA 57.503 34.615 0.00 0.00 0.00 3.41
493 509 8.068977 CCTGTACAACACTATACGATTAGAGAC 58.931 40.741 0.00 0.00 0.00 3.36
494 510 7.989170 TCCTGTACAACACTATACGATTAGAGA 59.011 37.037 0.00 0.00 0.00 3.10
495 511 8.151141 TCCTGTACAACACTATACGATTAGAG 57.849 38.462 0.00 0.00 0.00 2.43
496 512 8.400947 GTTCCTGTACAACACTATACGATTAGA 58.599 37.037 0.00 0.00 0.00 2.10
497 513 8.404000 AGTTCCTGTACAACACTATACGATTAG 58.596 37.037 0.00 0.00 0.00 1.73
498 514 8.284945 AGTTCCTGTACAACACTATACGATTA 57.715 34.615 0.00 0.00 0.00 1.75
499 515 7.166691 AGTTCCTGTACAACACTATACGATT 57.833 36.000 0.00 0.00 0.00 3.34
500 516 6.770746 AGTTCCTGTACAACACTATACGAT 57.229 37.500 0.00 0.00 0.00 3.73
501 517 6.016024 ACAAGTTCCTGTACAACACTATACGA 60.016 38.462 0.00 0.00 0.00 3.43
502 518 6.154445 ACAAGTTCCTGTACAACACTATACG 58.846 40.000 0.00 0.00 0.00 3.06
503 519 6.589139 GGACAAGTTCCTGTACAACACTATAC 59.411 42.308 0.00 0.00 41.95 1.47
504 520 6.694447 GGACAAGTTCCTGTACAACACTATA 58.306 40.000 0.00 0.00 41.95 1.31
505 521 5.548406 GGACAAGTTCCTGTACAACACTAT 58.452 41.667 0.00 0.00 41.95 2.12
506 522 4.952460 GGACAAGTTCCTGTACAACACTA 58.048 43.478 0.00 0.00 41.95 2.74
507 523 3.805207 GGACAAGTTCCTGTACAACACT 58.195 45.455 0.00 0.00 41.95 3.55
518 534 2.202566 GCTATGCGTAGGACAAGTTCC 58.797 52.381 14.75 0.00 46.33 3.62
519 535 2.888594 TGCTATGCGTAGGACAAGTTC 58.111 47.619 14.75 0.00 0.00 3.01
520 536 3.262420 CTTGCTATGCGTAGGACAAGTT 58.738 45.455 18.20 0.00 30.09 2.66
521 537 2.418746 CCTTGCTATGCGTAGGACAAGT 60.419 50.000 21.82 0.00 35.79 3.16
522 538 2.205074 CCTTGCTATGCGTAGGACAAG 58.795 52.381 18.98 18.98 35.79 3.16
523 539 1.553248 ACCTTGCTATGCGTAGGACAA 59.447 47.619 14.75 9.82 36.76 3.18
524 540 1.191535 ACCTTGCTATGCGTAGGACA 58.808 50.000 14.75 2.33 36.76 4.02
525 541 2.202566 GAACCTTGCTATGCGTAGGAC 58.797 52.381 14.75 0.00 36.76 3.85
526 542 1.202371 CGAACCTTGCTATGCGTAGGA 60.202 52.381 14.75 9.18 36.76 2.94
527 543 1.209128 CGAACCTTGCTATGCGTAGG 58.791 55.000 14.75 2.97 38.41 3.18
528 544 1.922570 ACGAACCTTGCTATGCGTAG 58.077 50.000 8.70 8.70 0.00 3.51
529 545 1.996898 CAACGAACCTTGCTATGCGTA 59.003 47.619 0.00 0.00 0.00 4.42
530 546 0.796312 CAACGAACCTTGCTATGCGT 59.204 50.000 0.00 0.00 0.00 5.24
531 547 1.075542 TCAACGAACCTTGCTATGCG 58.924 50.000 0.00 0.00 0.00 4.73
532 548 3.764885 AATCAACGAACCTTGCTATGC 57.235 42.857 0.00 0.00 0.00 3.14
533 549 7.064609 TCTCTTTAATCAACGAACCTTGCTATG 59.935 37.037 0.00 0.00 0.00 2.23
534 550 7.103641 TCTCTTTAATCAACGAACCTTGCTAT 58.896 34.615 0.00 0.00 0.00 2.97
535 551 6.460781 TCTCTTTAATCAACGAACCTTGCTA 58.539 36.000 0.00 0.00 0.00 3.49
536 552 5.305585 TCTCTTTAATCAACGAACCTTGCT 58.694 37.500 0.00 0.00 0.00 3.91
537 553 5.408604 TCTCTCTTTAATCAACGAACCTTGC 59.591 40.000 0.00 0.00 0.00 4.01
538 554 6.868864 TCTCTCTCTTTAATCAACGAACCTTG 59.131 38.462 0.00 0.00 0.00 3.61
539 555 6.994221 TCTCTCTCTTTAATCAACGAACCTT 58.006 36.000 0.00 0.00 0.00 3.50
540 556 6.434652 TCTCTCTCTCTTTAATCAACGAACCT 59.565 38.462 0.00 0.00 0.00 3.50
541 557 6.622549 TCTCTCTCTCTTTAATCAACGAACC 58.377 40.000 0.00 0.00 0.00 3.62
542 558 7.531716 TCTCTCTCTCTCTTTAATCAACGAAC 58.468 38.462 0.00 0.00 0.00 3.95
543 559 7.689446 TCTCTCTCTCTCTTTAATCAACGAA 57.311 36.000 0.00 0.00 0.00 3.85
544 560 7.873719 ATCTCTCTCTCTCTTTAATCAACGA 57.126 36.000 0.00 0.00 0.00 3.85
545 561 9.445786 GTAATCTCTCTCTCTCTTTAATCAACG 57.554 37.037 0.00 0.00 0.00 4.10
552 568 8.629158 GCAGATTGTAATCTCTCTCTCTCTTTA 58.371 37.037 4.20 0.00 43.65 1.85
553 569 7.342799 AGCAGATTGTAATCTCTCTCTCTCTTT 59.657 37.037 4.20 0.00 43.65 2.52
554 570 6.835488 AGCAGATTGTAATCTCTCTCTCTCTT 59.165 38.462 4.20 0.00 43.65 2.85
590 606 9.613428 TTCCTCAATCAAATCAAACGATATAGT 57.387 29.630 0.00 0.00 0.00 2.12
611 627 1.516603 GTGTAGCGACGCCTTCCTC 60.517 63.158 17.79 1.61 0.00 3.71
612 628 2.572284 GTGTAGCGACGCCTTCCT 59.428 61.111 17.79 0.00 0.00 3.36
630 646 1.482593 AGCTCCTTCCTTCCACGTATG 59.517 52.381 0.00 0.00 0.00 2.39
631 647 1.757699 GAGCTCCTTCCTTCCACGTAT 59.242 52.381 0.87 0.00 0.00 3.06
632 648 1.183549 GAGCTCCTTCCTTCCACGTA 58.816 55.000 0.87 0.00 0.00 3.57
633 649 1.878656 CGAGCTCCTTCCTTCCACGT 61.879 60.000 8.47 0.00 0.00 4.49
645 661 2.194271 CACCGTTTCTTATCGAGCTCC 58.806 52.381 8.47 0.00 0.00 4.70
649 665 1.320555 CACGCACCGTTTCTTATCGAG 59.679 52.381 0.00 0.00 38.32 4.04
692 708 5.611796 TTGATTTGATTTGTCGTCTCCAG 57.388 39.130 0.00 0.00 0.00 3.86
709 725 4.583073 GGCCGGGTAGTATTTGATTTGATT 59.417 41.667 2.18 0.00 0.00 2.57
710 726 4.142038 GGCCGGGTAGTATTTGATTTGAT 58.858 43.478 2.18 0.00 0.00 2.57
711 727 3.054287 TGGCCGGGTAGTATTTGATTTGA 60.054 43.478 2.18 0.00 0.00 2.69
712 728 3.066203 GTGGCCGGGTAGTATTTGATTTG 59.934 47.826 2.18 0.00 0.00 2.32
713 729 3.284617 GTGGCCGGGTAGTATTTGATTT 58.715 45.455 2.18 0.00 0.00 2.17
738 754 1.595382 GATCGGACGGGCAGGATTG 60.595 63.158 0.00 0.00 0.00 2.67
746 762 2.421739 GTGATGGGATCGGACGGG 59.578 66.667 0.00 0.00 0.00 5.28
840 857 4.202141 GCTGTGCCAGGCAATATTTATTGA 60.202 41.667 18.28 0.00 41.47 2.57
938 955 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
939 956 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
940 957 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
941 958 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
942 959 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
943 960 2.694616 AGTGGTGGTGGTGGTGGT 60.695 61.111 0.00 0.00 0.00 4.16
1476 1501 8.611654 ATTGTAATTTGTAACTGTAACCGAGT 57.388 30.769 0.00 0.00 0.00 4.18
1526 1753 5.288232 CACTCAAACTTGACATTCGCAAAAA 59.712 36.000 0.00 0.00 32.90 1.94
1597 1824 5.066505 ACTGGTCAATGTCAGACAAACTTTC 59.933 40.000 7.50 0.00 37.74 2.62
1607 1834 3.850122 TCGTCTACTGGTCAATGTCAG 57.150 47.619 5.23 5.23 37.07 3.51
1608 1835 4.381612 GGATTCGTCTACTGGTCAATGTCA 60.382 45.833 0.00 0.00 0.00 3.58
1609 1836 4.113354 GGATTCGTCTACTGGTCAATGTC 58.887 47.826 0.00 0.00 0.00 3.06
1610 1837 3.513912 TGGATTCGTCTACTGGTCAATGT 59.486 43.478 0.00 0.00 0.00 2.71
1611 1838 4.123497 TGGATTCGTCTACTGGTCAATG 57.877 45.455 0.00 0.00 0.00 2.82
1744 1976 2.032549 CCACTAGTGCAAATCGCTATGC 60.033 50.000 17.86 0.00 43.06 3.14
1745 1977 2.545526 CCCACTAGTGCAAATCGCTATG 59.454 50.000 17.86 0.00 43.06 2.23
1746 1978 2.170607 ACCCACTAGTGCAAATCGCTAT 59.829 45.455 17.86 0.00 43.06 2.97
1748 1980 0.324943 ACCCACTAGTGCAAATCGCT 59.675 50.000 17.86 0.00 43.06 4.93
1749 1981 1.135689 CAACCCACTAGTGCAAATCGC 60.136 52.381 17.86 0.00 42.89 4.58
1750 1982 1.468520 CCAACCCACTAGTGCAAATCG 59.531 52.381 17.86 2.49 0.00 3.34
1751 1983 2.228822 CACCAACCCACTAGTGCAAATC 59.771 50.000 17.86 0.00 0.00 2.17
1752 1984 2.238521 CACCAACCCACTAGTGCAAAT 58.761 47.619 17.86 0.24 0.00 2.32
1794 2026 2.106338 CCTTGGGGGCAAAAGAAACAAT 59.894 45.455 0.00 0.00 0.00 2.71
1914 2148 5.533154 CCTAACACACCTATCAAACCACAAA 59.467 40.000 0.00 0.00 0.00 2.83
1966 2200 5.419542 TCCAACATCTAGTTCGGAAGATTG 58.580 41.667 0.00 0.00 38.74 2.67
1978 2212 4.580995 AGTACCATCGTCTCCAACATCTAG 59.419 45.833 0.00 0.00 0.00 2.43
2179 2415 0.169672 CAAGCACGCTCCTCCATTTG 59.830 55.000 0.00 0.00 0.00 2.32
2398 2634 6.005583 TCAAGTCTGTGAAATGAAATCAGC 57.994 37.500 0.00 0.00 0.00 4.26
2426 2662 1.809619 CGTATGCACTGTCACGGGG 60.810 63.158 0.00 0.00 0.00 5.73
2490 2727 6.106673 ACAAGAATTTCCACATAGTAGACCG 58.893 40.000 0.00 0.00 0.00 4.79
2532 2780 5.269313 GTGCAGTTGAAAGAGAAACAGAAG 58.731 41.667 0.00 0.00 0.00 2.85
2546 2794 5.045942 TCCTATTTGATACTGGTGCAGTTGA 60.046 40.000 0.00 0.00 42.59 3.18
2659 2912 6.646653 TGCATCGTATGATTTCCTCATCTTAC 59.353 38.462 0.00 0.00 43.70 2.34
2660 2913 6.758254 TGCATCGTATGATTTCCTCATCTTA 58.242 36.000 0.00 0.00 43.70 2.10
2661 2914 5.614308 TGCATCGTATGATTTCCTCATCTT 58.386 37.500 0.00 0.00 43.70 2.40
2662 2915 5.219343 TGCATCGTATGATTTCCTCATCT 57.781 39.130 0.00 0.00 43.70 2.90
2670 2923 7.646526 CAGTTGATTTCATGCATCGTATGATTT 59.353 33.333 0.00 0.00 34.76 2.17
2677 2930 2.751259 AGCAGTTGATTTCATGCATCGT 59.249 40.909 0.00 0.00 41.14 3.73
2714 2967 8.458843 GTTATGTGCTAATGTACTTTCCACAAT 58.541 33.333 21.18 15.44 33.31 2.71
2730 2983 8.217799 AGCAAAGATAAATAGGGTTATGTGCTA 58.782 33.333 0.00 0.00 34.30 3.49
2744 2997 5.180868 GGCAGATCGATCAGCAAAGATAAAT 59.819 40.000 34.46 7.07 40.59 1.40
2749 3002 1.483827 AGGCAGATCGATCAGCAAAGA 59.516 47.619 34.46 0.00 40.59 2.52
2788 3041 6.597280 TGTTTGTGCATAATGACATACTAGCA 59.403 34.615 0.00 0.00 0.00 3.49
2803 3056 5.367302 AGCCAAAGTAATTTGTTTGTGCAT 58.633 33.333 14.02 0.00 34.74 3.96
2809 3062 9.777297 ATGTCAATTAGCCAAAGTAATTTGTTT 57.223 25.926 14.02 4.95 29.39 2.83
2817 3070 5.476599 AGCAACATGTCAATTAGCCAAAGTA 59.523 36.000 0.00 0.00 0.00 2.24
2819 3072 4.813027 AGCAACATGTCAATTAGCCAAAG 58.187 39.130 0.00 0.00 0.00 2.77
2842 3095 7.446013 ACCTGACCAATCGTAACAAATAAGAAA 59.554 33.333 0.00 0.00 0.00 2.52
2844 3097 6.370442 CACCTGACCAATCGTAACAAATAAGA 59.630 38.462 0.00 0.00 0.00 2.10
2886 3140 5.182001 AGCTATTGTGTCACTCATTCCAAAC 59.818 40.000 4.27 0.00 0.00 2.93
2889 3143 4.558226 AGCTATTGTGTCACTCATTCCA 57.442 40.909 4.27 0.00 0.00 3.53
2935 3189 2.489722 GAGGTTCCTTGATGTTCCAAGC 59.510 50.000 0.00 0.00 41.53 4.01
2994 3248 6.204495 GCACAAGAGCAAAAATCCCAATAAAA 59.796 34.615 0.00 0.00 0.00 1.52
3012 3266 3.228188 ACTTTTCTCATGGGCACAAGA 57.772 42.857 0.00 0.00 0.00 3.02
3036 3290 2.519013 AGGGAGAAACATGTTGAAGGC 58.481 47.619 12.82 0.51 0.00 4.35
3079 3333 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
3080 3334 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
3081 3335 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3082 3336 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3083 3337 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3084 3338 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3085 3339 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3086 3340 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3087 3341 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3099 3353 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3100 3354 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3101 3355 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3102 3356 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3133 3387 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
3134 3388 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
3135 3389 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3136 3390 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3142 3396 7.988028 GCTTGTACTCCCTCTGTAAAGAAATAT 59.012 37.037 0.00 0.00 0.00 1.28
3143 3397 7.038587 TGCTTGTACTCCCTCTGTAAAGAAATA 60.039 37.037 0.00 0.00 0.00 1.40
3144 3398 6.174049 GCTTGTACTCCCTCTGTAAAGAAAT 58.826 40.000 0.00 0.00 0.00 2.17
3145 3399 5.071250 TGCTTGTACTCCCTCTGTAAAGAAA 59.929 40.000 0.00 0.00 0.00 2.52
3146 3400 4.591498 TGCTTGTACTCCCTCTGTAAAGAA 59.409 41.667 0.00 0.00 0.00 2.52
3147 3401 4.157246 TGCTTGTACTCCCTCTGTAAAGA 58.843 43.478 0.00 0.00 0.00 2.52
3148 3402 4.537135 TGCTTGTACTCCCTCTGTAAAG 57.463 45.455 0.00 0.00 0.00 1.85
3149 3403 4.967084 TTGCTTGTACTCCCTCTGTAAA 57.033 40.909 0.00 0.00 0.00 2.01
3150 3404 4.347000 AGTTTGCTTGTACTCCCTCTGTAA 59.653 41.667 0.00 0.00 0.00 2.41
3151 3405 3.901844 AGTTTGCTTGTACTCCCTCTGTA 59.098 43.478 0.00 0.00 0.00 2.74
3152 3406 2.706190 AGTTTGCTTGTACTCCCTCTGT 59.294 45.455 0.00 0.00 0.00 3.41
3153 3407 3.409026 AGTTTGCTTGTACTCCCTCTG 57.591 47.619 0.00 0.00 0.00 3.35
3154 3408 4.137543 CAAAGTTTGCTTGTACTCCCTCT 58.862 43.478 1.96 0.00 34.71 3.69
3155 3409 3.883489 ACAAAGTTTGCTTGTACTCCCTC 59.117 43.478 15.59 0.00 34.71 4.30
3156 3410 3.898482 ACAAAGTTTGCTTGTACTCCCT 58.102 40.909 15.59 0.00 34.71 4.20
3157 3411 4.338400 AGAACAAAGTTTGCTTGTACTCCC 59.662 41.667 15.59 0.00 34.71 4.30
3158 3412 5.065988 TGAGAACAAAGTTTGCTTGTACTCC 59.934 40.000 15.59 0.00 34.71 3.85
3159 3413 6.119144 TGAGAACAAAGTTTGCTTGTACTC 57.881 37.500 15.59 13.74 34.71 2.59
3160 3414 6.318648 TGATGAGAACAAAGTTTGCTTGTACT 59.681 34.615 15.59 6.11 34.71 2.73
3161 3415 6.494842 TGATGAGAACAAAGTTTGCTTGTAC 58.505 36.000 15.59 3.84 34.71 2.90
3377 3668 7.361286 CCAGTATCTTTACTTGCTTCCTGAAAC 60.361 40.741 0.00 0.00 36.50 2.78
3393 3684 4.929146 AAAGTACCTGCCCAGTATCTTT 57.071 40.909 0.00 0.35 0.00 2.52
3418 3709 2.086610 AAGCCCCAGAAAAAGCTCAA 57.913 45.000 0.00 0.00 33.56 3.02
3529 3820 3.244665 TGTCAGCAGAACCAAGATGATGT 60.245 43.478 0.00 0.00 32.32 3.06
3533 3824 1.467734 GCTGTCAGCAGAACCAAGATG 59.532 52.381 20.16 0.00 45.28 2.90
3588 3879 8.399425 AGACGTTTCTGTAGATACATTAGTCAG 58.601 37.037 0.00 0.00 35.36 3.51
3597 3888 7.166142 GCAAGATGTAGACGTTTCTGTAGATAC 59.834 40.741 0.00 0.00 32.75 2.24
3678 3969 4.446371 ACACTAGACATTATCTTGCAGCC 58.554 43.478 0.00 0.00 39.04 4.85
3717 4008 0.537653 GAGACTGCCAGGGAACTACC 59.462 60.000 0.00 0.00 40.21 3.18
3726 4017 3.068873 GGTTCAGTATAGGAGACTGCCAG 59.931 52.174 0.00 0.00 43.37 4.85
3727 4018 3.031736 GGTTCAGTATAGGAGACTGCCA 58.968 50.000 0.00 0.00 43.37 4.92
3795 4086 0.819582 CAGATCATGCCAACCCCAAC 59.180 55.000 0.00 0.00 0.00 3.77
3842 4133 3.244946 CCCACGAGATGATACCTCCTAGA 60.245 52.174 0.00 0.00 0.00 2.43
3990 4282 6.842163 ACATTGTTGGATTTTAGCTTAGACG 58.158 36.000 0.00 0.00 0.00 4.18
4114 4406 6.927294 AGCACCTTGACAAAGTTATATAGC 57.073 37.500 0.00 0.00 0.00 2.97
4117 4409 7.226720 CGGATAAGCACCTTGACAAAGTTATAT 59.773 37.037 0.00 0.00 0.00 0.86
4403 4695 1.041447 GCATTGCAGAAGGCCAGGAT 61.041 55.000 5.01 0.00 43.89 3.24
4537 4829 2.361789 CTCATCATCACACCACATGCA 58.638 47.619 0.00 0.00 0.00 3.96
4540 4832 2.793288 TGCTCATCATCACACCACAT 57.207 45.000 0.00 0.00 0.00 3.21
4658 4950 2.612721 GGGAAATGACACAACCCATTGC 60.613 50.000 0.00 0.00 39.66 3.56
4699 4991 0.394938 TGTCGCTGAAGGCCTTGTAA 59.605 50.000 26.25 7.38 37.74 2.41
4725 5017 2.469516 GGGTATTCGGTGCCGCTTG 61.470 63.158 5.64 0.00 39.59 4.01
4734 5026 0.034896 ATAAGGCGCTGGGTATTCGG 59.965 55.000 7.64 0.00 0.00 4.30
5202 5525 2.825387 GATGCTGATGCGTGGCCA 60.825 61.111 0.00 0.00 43.34 5.36
5220 5543 4.260784 GGAAAGTGGCTCTAATTACATGCG 60.261 45.833 0.00 0.00 0.00 4.73
5232 5555 2.361737 GGCCTGGGAAAGTGGCTC 60.362 66.667 0.00 0.00 45.45 4.70
5239 5562 1.484240 CAAAACAAGTGGCCTGGGAAA 59.516 47.619 3.32 0.00 0.00 3.13
5273 5596 2.538141 CCCTTGCCTGGACCCAAGA 61.538 63.158 12.41 0.00 40.59 3.02
5342 5665 5.767816 TTTCCTCTTCCTTTTTACACTGC 57.232 39.130 0.00 0.00 0.00 4.40
5400 5724 5.266733 ACAGACAAAATGTGAAATGCTGT 57.733 34.783 0.00 0.00 0.00 4.40
5478 5826 4.484236 GAGATGCTCTTACGATCCAGATG 58.516 47.826 0.00 0.00 0.00 2.90
5503 5851 1.334869 GGCCGCAGTTTTCATATCTGG 59.665 52.381 0.00 0.00 0.00 3.86
5564 5913 2.736670 ATCATAGGCCGGAGCTTTTT 57.263 45.000 5.05 0.00 39.73 1.94
5566 5915 1.348036 GGTATCATAGGCCGGAGCTTT 59.652 52.381 5.05 0.00 39.73 3.51
5567 5916 0.977395 GGTATCATAGGCCGGAGCTT 59.023 55.000 5.05 0.00 39.73 3.74
5574 5923 5.775195 AGCTAAAATTTGGGTATCATAGGCC 59.225 40.000 0.00 0.00 0.00 5.19
5584 5934 3.840078 AGCATTGGAGCTAAAATTTGGGT 59.160 39.130 0.00 0.00 44.50 4.51
5739 6094 2.687425 TGTGTGTGGATGGTTTGAGTTG 59.313 45.455 0.00 0.00 0.00 3.16
5755 6134 1.728825 GCTTGTGTGTGTGTGTGTGTG 60.729 52.381 0.00 0.00 0.00 3.82
5756 6135 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
5757 6136 0.804364 AGCTTGTGTGTGTGTGTGTG 59.196 50.000 0.00 0.00 0.00 3.82
5758 6137 1.468520 GAAGCTTGTGTGTGTGTGTGT 59.531 47.619 2.10 0.00 0.00 3.72
5759 6138 1.739466 AGAAGCTTGTGTGTGTGTGTG 59.261 47.619 2.10 0.00 0.00 3.82
5760 6139 2.113860 AGAAGCTTGTGTGTGTGTGT 57.886 45.000 2.10 0.00 0.00 3.72
5761 6140 4.152402 GGTATAGAAGCTTGTGTGTGTGTG 59.848 45.833 2.10 0.00 0.00 3.82
5762 6141 4.202315 TGGTATAGAAGCTTGTGTGTGTGT 60.202 41.667 2.10 0.00 0.00 3.72
5763 6142 4.314961 TGGTATAGAAGCTTGTGTGTGTG 58.685 43.478 2.10 0.00 0.00 3.82
5878 6260 4.429212 CGTCGACGGGACATGGCA 62.429 66.667 29.70 0.00 46.42 4.92
5904 6286 4.109675 GTGGGGACGGGTGATGGG 62.110 72.222 0.00 0.00 0.00 4.00
5927 6309 3.883744 GATGGCGAGGTATGGGGCG 62.884 68.421 0.00 0.00 0.00 6.13
5928 6310 2.032681 GATGGCGAGGTATGGGGC 59.967 66.667 0.00 0.00 0.00 5.80
5929 6311 2.750350 GGATGGCGAGGTATGGGG 59.250 66.667 0.00 0.00 0.00 4.96
5949 6370 1.118838 AGTGATAGTGGCAGGAGCTC 58.881 55.000 4.71 4.71 41.70 4.09
6003 6424 3.775654 GACTGGGGGAGACGGCAG 61.776 72.222 0.00 0.00 0.00 4.85
6006 6427 1.041447 AATACGACTGGGGGAGACGG 61.041 60.000 0.00 0.00 43.13 4.79
6008 6429 3.007635 CAAAAATACGACTGGGGGAGAC 58.992 50.000 0.00 0.00 0.00 3.36
6009 6430 2.026636 CCAAAAATACGACTGGGGGAGA 60.027 50.000 0.00 0.00 0.00 3.71
6025 6454 4.662468 TGATGTAAAACTGCTGCCAAAA 57.338 36.364 0.00 0.00 0.00 2.44
6055 6484 4.888326 TTGGCACCAGATTATTTTTGCT 57.112 36.364 0.00 0.00 0.00 3.91
6080 6509 7.951347 ATGCAATATCAAAAAGGAGAGAAGT 57.049 32.000 0.00 0.00 0.00 3.01
6124 6553 9.823098 CATCTGATTATTTCTGGATTCGAAATC 57.177 33.333 0.00 0.35 40.48 2.17
6129 6558 6.549912 TGCATCTGATTATTTCTGGATTCG 57.450 37.500 0.00 0.00 0.00 3.34
6132 6561 9.922477 ATATCATGCATCTGATTATTTCTGGAT 57.078 29.630 8.05 0.64 37.13 3.41
6133 6562 9.174166 CATATCATGCATCTGATTATTTCTGGA 57.826 33.333 8.05 0.00 37.13 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.