Multiple sequence alignment - TraesCS6B01G262300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G262300 chr6B 100.000 5611 0 0 1 5611 472604110 472609720 0.000000e+00 10362.0
1 TraesCS6B01G262300 chr6B 91.837 588 31 7 1 572 625076461 625075875 0.000000e+00 804.0
2 TraesCS6B01G262300 chr6B 90.816 588 35 10 1 574 514218518 514217936 0.000000e+00 769.0
3 TraesCS6B01G262300 chr6A 92.754 3174 126 35 2085 5195 410576095 410579227 0.000000e+00 4492.0
4 TraesCS6B01G262300 chr6A 90.114 1497 71 39 593 2039 410573982 410575451 0.000000e+00 1873.0
5 TraesCS6B01G262300 chr6A 87.788 434 13 17 5204 5611 410579276 410579695 6.580000e-129 472.0
6 TraesCS6B01G262300 chr6D 93.730 2169 81 20 2088 4227 304768864 304766722 0.000000e+00 3201.0
7 TraesCS6B01G262300 chr6D 90.215 1533 78 33 593 2085 304770402 304768902 0.000000e+00 1934.0
8 TraesCS6B01G262300 chr6D 90.157 955 46 20 4226 5164 304766565 304765643 0.000000e+00 1199.0
9 TraesCS6B01G262300 chr6D 90.909 583 38 5 1 568 471362490 471361908 0.000000e+00 769.0
10 TraesCS6B01G262300 chr6D 90.582 584 38 7 1 569 62874946 62875527 0.000000e+00 758.0
11 TraesCS6B01G262300 chr6D 95.918 49 2 0 5131 5179 304765629 304765581 4.660000e-11 80.5
12 TraesCS6B01G262300 chr5B 91.653 599 34 6 1 583 680249120 680249718 0.000000e+00 815.0
13 TraesCS6B01G262300 chr7D 90.728 604 38 8 1 588 514979310 514978709 0.000000e+00 789.0
14 TraesCS6B01G262300 chr7D 85.385 130 15 1 1948 2077 593035323 593035198 1.270000e-26 132.0
15 TraesCS6B01G262300 chr2B 93.701 508 30 1 1 506 82423862 82423355 0.000000e+00 760.0
16 TraesCS6B01G262300 chr7B 90.323 589 42 4 1 574 654079411 654079999 0.000000e+00 758.0
17 TraesCS6B01G262300 chr7B 87.912 364 29 12 3683 4040 498879806 498879452 1.120000e-111 414.0
18 TraesCS6B01G262300 chr7B 85.385 130 13 4 1956 2085 211374196 211374073 4.560000e-26 130.0
19 TraesCS6B01G262300 chr7B 90.217 92 2 4 2676 2760 498879899 498879808 4.590000e-21 113.0
20 TraesCS6B01G262300 chr2D 90.051 583 43 5 1 568 50974101 50973519 0.000000e+00 741.0
21 TraesCS6B01G262300 chr2D 89.835 364 22 12 3683 4040 543554200 543554554 2.380000e-123 453.0
22 TraesCS6B01G262300 chr2D 89.130 92 3 7 2676 2760 543554107 543554198 2.140000e-19 108.0
23 TraesCS6B01G262300 chrUn 89.532 363 25 10 3683 4040 104134377 104134023 1.110000e-121 448.0
24 TraesCS6B01G262300 chrUn 89.130 92 3 4 2676 2760 104134470 104134379 2.140000e-19 108.0
25 TraesCS6B01G262300 chr3B 89.532 363 25 10 3683 4040 40134408 40134762 1.110000e-121 448.0
26 TraesCS6B01G262300 chr3B 86.630 359 33 11 3683 4034 828800296 828800646 3.170000e-102 383.0
27 TraesCS6B01G262300 chr3B 90.217 92 1 7 2676 2760 828800204 828800294 4.590000e-21 113.0
28 TraesCS6B01G262300 chr3B 89.130 92 3 4 2676 2760 40134315 40134406 2.140000e-19 108.0
29 TraesCS6B01G262300 chr3A 89.381 339 18 9 3529 3863 21105275 21105599 1.450000e-110 411.0
30 TraesCS6B01G262300 chr3A 88.217 314 25 9 3683 3992 476304919 476304614 1.150000e-96 364.0
31 TraesCS6B01G262300 chr7A 87.121 132 11 3 1955 2085 427814850 427814976 1.630000e-30 145.0
32 TraesCS6B01G262300 chr7A 86.047 129 14 1 1956 2084 486929940 486930064 9.810000e-28 135.0
33 TraesCS6B01G262300 chr7A 85.271 129 15 2 1948 2076 685583873 685583749 4.560000e-26 130.0
34 TraesCS6B01G262300 chr4B 86.885 122 10 3 1956 2076 482660729 482660613 1.270000e-26 132.0
35 TraesCS6B01G262300 chr5A 84.848 132 13 6 1955 2085 86662172 86662047 5.900000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G262300 chr6B 472604110 472609720 5610 False 10362.000 10362 100.000000 1 5611 1 chr6B.!!$F1 5610
1 TraesCS6B01G262300 chr6B 625075875 625076461 586 True 804.000 804 91.837000 1 572 1 chr6B.!!$R2 571
2 TraesCS6B01G262300 chr6B 514217936 514218518 582 True 769.000 769 90.816000 1 574 1 chr6B.!!$R1 573
3 TraesCS6B01G262300 chr6A 410573982 410579695 5713 False 2279.000 4492 90.218667 593 5611 3 chr6A.!!$F1 5018
4 TraesCS6B01G262300 chr6D 304765581 304770402 4821 True 1603.625 3201 92.505000 593 5179 4 chr6D.!!$R2 4586
5 TraesCS6B01G262300 chr6D 471361908 471362490 582 True 769.000 769 90.909000 1 568 1 chr6D.!!$R1 567
6 TraesCS6B01G262300 chr6D 62874946 62875527 581 False 758.000 758 90.582000 1 569 1 chr6D.!!$F1 568
7 TraesCS6B01G262300 chr5B 680249120 680249718 598 False 815.000 815 91.653000 1 583 1 chr5B.!!$F1 582
8 TraesCS6B01G262300 chr7D 514978709 514979310 601 True 789.000 789 90.728000 1 588 1 chr7D.!!$R1 587
9 TraesCS6B01G262300 chr2B 82423355 82423862 507 True 760.000 760 93.701000 1 506 1 chr2B.!!$R1 505
10 TraesCS6B01G262300 chr7B 654079411 654079999 588 False 758.000 758 90.323000 1 574 1 chr7B.!!$F1 573
11 TraesCS6B01G262300 chr2D 50973519 50974101 582 True 741.000 741 90.051000 1 568 1 chr2D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 909 0.616964 GTACCGGAGAAGACCCCCTT 60.617 60.0 9.46 0.00 37.93 3.95 F
1545 1587 0.324091 GGACCGACACCTTCCTAGGA 60.324 60.0 7.62 7.62 45.05 2.94 F
2166 2842 0.325602 TGCTAGTAAAACACCCCCGG 59.674 55.0 0.00 0.00 0.00 5.73 F
3433 4124 0.109723 AATGGCTGGTGTTACCGTGT 59.890 50.0 0.00 0.00 42.58 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2762 3453 0.108585 TGACGCTTCCCTTGAAAGCT 59.891 50.0 6.32 0.00 0.00 3.74 R
3428 4119 1.792006 GACTGTTGTCCCTAACACGG 58.208 55.0 0.00 0.00 37.70 4.94 R
4052 4757 0.804989 GGAGGAGCAAACATGTTCGG 59.195 55.0 12.39 8.63 0.00 4.30 R
4985 5884 0.036388 TGAGGTGCACCGAGGATTTC 60.036 55.0 29.68 19.64 42.08 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.791973 TCACCACAACAAAACCATGAC 57.208 42.857 0.00 0.00 0.00 3.06
197 200 2.749076 CCGGTCAAATCTCAAGCAATGA 59.251 45.455 0.00 0.00 36.38 2.57
221 224 2.777692 GGGGATCTAGTGGGTGATTTGA 59.222 50.000 0.00 0.00 0.00 2.69
227 230 1.381867 AGTGGGTGATTTGATGGGGA 58.618 50.000 0.00 0.00 0.00 4.81
340 344 2.347490 GAACCTGCCGCCAGAGAA 59.653 61.111 0.00 0.00 41.77 2.87
342 346 2.456287 GAACCTGCCGCCAGAGAACT 62.456 60.000 0.00 0.00 41.77 3.01
677 698 1.202188 TGAGCGCACGAGTCAAGATAG 60.202 52.381 11.47 0.00 0.00 2.08
688 709 2.849646 AAGATAGCCCCCGAGCCC 60.850 66.667 0.00 0.00 0.00 5.19
885 909 0.616964 GTACCGGAGAAGACCCCCTT 60.617 60.000 9.46 0.00 37.93 3.95
915 946 4.692475 AAAACGACCGCCCCTCCG 62.692 66.667 0.00 0.00 0.00 4.63
948 979 4.150454 CGCCCCTCTCCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
981 1012 0.676782 CCCGGCAAGACTAGGGTTTG 60.677 60.000 0.00 0.00 39.05 2.93
1134 1172 2.676471 GGCGGCATCACCAAGGTT 60.676 61.111 3.07 0.00 39.03 3.50
1135 1173 2.275380 GGCGGCATCACCAAGGTTT 61.275 57.895 3.07 0.00 39.03 3.27
1137 1175 1.080569 CGGCATCACCAAGGTTTGC 60.081 57.895 13.06 13.06 39.03 3.68
1201 1239 0.956633 CCCCAAATCTGATGATGCCG 59.043 55.000 0.00 0.00 32.44 5.69
1302 1340 0.507358 GACGACAAGTCCAGTTTCGC 59.493 55.000 0.00 0.00 43.95 4.70
1332 1370 3.677527 CGAGGTGTCCACGGTACT 58.322 61.111 0.00 0.00 34.18 2.73
1336 1374 2.945008 CGAGGTGTCCACGGTACTAATA 59.055 50.000 0.00 0.00 34.18 0.98
1346 1384 4.499357 CCACGGTACTAATACTGCCTCTTC 60.499 50.000 0.00 0.00 40.86 2.87
1350 1388 1.413077 ACTAATACTGCCTCTTCGCCC 59.587 52.381 0.00 0.00 0.00 6.13
1395 1437 2.235402 TCCTCTTAACCCGGTGCTTAAG 59.765 50.000 13.62 13.62 33.11 1.85
1414 1456 8.609176 TGCTTAAGGACATTGTAAATAATCGAC 58.391 33.333 4.29 0.00 0.00 4.20
1429 1471 0.690762 TCGACTCTCCTTTTTGGGGG 59.309 55.000 0.00 0.00 36.78 5.40
1431 1473 1.282157 CGACTCTCCTTTTTGGGGGAT 59.718 52.381 0.00 0.00 35.02 3.85
1432 1474 2.290960 CGACTCTCCTTTTTGGGGGATT 60.291 50.000 0.00 0.00 35.02 3.01
1531 1573 0.879765 AGCGGATTATAGTCGGACCG 59.120 55.000 7.84 7.84 42.63 4.79
1542 1584 1.379916 TCGGACCGACACCTTCCTA 59.620 57.895 13.88 0.00 0.00 2.94
1545 1587 0.324091 GGACCGACACCTTCCTAGGA 60.324 60.000 7.62 7.62 45.05 2.94
1546 1588 1.553706 GACCGACACCTTCCTAGGAA 58.446 55.000 22.94 22.94 45.05 3.36
1588 1630 4.319046 CGGACTGAAACATGTCTGTTCTTG 60.319 45.833 0.00 0.46 44.83 3.02
1614 1656 9.360093 GAATTATTATTACTCACTCCGATCCAG 57.640 37.037 0.00 0.00 0.00 3.86
1615 1657 5.730296 ATTATTACTCACTCCGATCCAGG 57.270 43.478 0.00 0.00 0.00 4.45
1616 1658 1.776662 TTACTCACTCCGATCCAGGG 58.223 55.000 0.00 0.00 0.00 4.45
1617 1659 0.924090 TACTCACTCCGATCCAGGGA 59.076 55.000 0.00 0.00 0.00 4.20
1698 1769 8.313944 ACATATAACACTGGTCAGGTGTATTA 57.686 34.615 2.87 0.00 45.64 0.98
1807 1878 1.440618 ACCACACCCACCATCTGTAA 58.559 50.000 0.00 0.00 0.00 2.41
1840 1912 4.743018 CCACACCAATGGGACTCC 57.257 61.111 3.55 0.00 35.95 3.85
1841 1913 2.078452 CCACACCAATGGGACTCCT 58.922 57.895 3.55 0.00 35.95 3.69
1842 1914 0.405585 CCACACCAATGGGACTCCTT 59.594 55.000 3.55 0.00 35.95 3.36
1843 1915 1.203050 CCACACCAATGGGACTCCTTT 60.203 52.381 3.55 0.00 35.95 3.11
1844 1916 2.041081 CCACACCAATGGGACTCCTTTA 59.959 50.000 3.55 0.00 35.95 1.85
1845 1917 3.081804 CACACCAATGGGACTCCTTTAC 58.918 50.000 3.55 0.00 38.05 2.01
1846 1918 2.714250 ACACCAATGGGACTCCTTTACA 59.286 45.455 3.55 0.00 38.05 2.41
1847 1919 3.139397 ACACCAATGGGACTCCTTTACAA 59.861 43.478 3.55 0.00 38.05 2.41
1848 1920 3.758554 CACCAATGGGACTCCTTTACAAG 59.241 47.826 3.55 0.00 38.05 3.16
1849 1921 3.245264 ACCAATGGGACTCCTTTACAAGG 60.245 47.826 3.55 0.00 43.38 3.61
1850 1922 4.436713 CCAATGGGACTCCTTTACAAGGC 61.437 52.174 0.00 0.00 42.22 4.35
1851 1923 6.880934 CCAATGGGACTCCTTTACAAGGCA 62.881 50.000 0.00 0.00 42.22 4.75
1860 1932 2.421424 CCTTTACAAGGCATGACTCTGC 59.579 50.000 0.00 0.00 42.78 4.26
1861 1933 2.857186 TTACAAGGCATGACTCTGCA 57.143 45.000 0.00 0.00 44.12 4.41
1862 1934 2.391616 TACAAGGCATGACTCTGCAG 57.608 50.000 7.63 7.63 44.12 4.41
1863 1935 0.959372 ACAAGGCATGACTCTGCAGC 60.959 55.000 9.47 0.00 44.12 5.25
1864 1936 1.744368 AAGGCATGACTCTGCAGCG 60.744 57.895 9.47 5.22 44.12 5.18
1865 1937 3.873883 GGCATGACTCTGCAGCGC 61.874 66.667 9.47 0.00 44.12 5.92
1866 1938 2.818714 GCATGACTCTGCAGCGCT 60.819 61.111 9.47 2.64 41.87 5.92
1884 1956 0.950555 CTGCTTGCTACCAGCGTTCA 60.951 55.000 0.00 0.00 46.26 3.18
1887 1959 0.512952 CTTGCTACCAGCGTTCACAC 59.487 55.000 0.00 0.00 46.26 3.82
1896 1972 0.588252 AGCGTTCACACAGTCATTGC 59.412 50.000 0.00 0.00 0.00 3.56
1979 2057 6.651975 ACTCCCTCCGTTCACTATTATAAG 57.348 41.667 0.00 0.00 0.00 1.73
1989 2067 9.104965 CCGTTCACTATTATAAGATGTTTTGGA 57.895 33.333 0.00 0.00 0.00 3.53
2046 2428 6.811253 AGTGAACAAACACACTCACTAAAA 57.189 33.333 1.85 0.00 45.10 1.52
2054 2436 3.863424 ACACACTCACTAAAACGTGTCTG 59.137 43.478 0.00 0.00 38.44 3.51
2068 2709 5.973651 ACGTGTCTGCATACATCTAATTG 57.026 39.130 8.28 0.00 0.00 2.32
2138 2814 5.436175 CATCCTGGTTAACCATACACATGA 58.564 41.667 27.24 14.54 46.46 3.07
2139 2815 5.097742 TCCTGGTTAACCATACACATGAG 57.902 43.478 27.24 12.15 46.46 2.90
2161 2837 4.021456 AGCCCAAATTGCTAGTAAAACACC 60.021 41.667 0.00 0.00 37.28 4.16
2166 2842 0.325602 TGCTAGTAAAACACCCCCGG 59.674 55.000 0.00 0.00 0.00 5.73
2232 2908 5.957798 CAAGGATTGTGCAGTCATGTATTT 58.042 37.500 0.00 0.00 42.34 1.40
2233 2909 5.824904 AGGATTGTGCAGTCATGTATTTC 57.175 39.130 0.00 0.00 0.00 2.17
2234 2910 5.503927 AGGATTGTGCAGTCATGTATTTCT 58.496 37.500 0.00 0.00 0.00 2.52
2258 2947 3.530535 ACCTTGTGGTTTTGTGAAATGC 58.469 40.909 0.00 0.00 46.05 3.56
2280 2969 1.393603 GCAGTTTAGAGGGCCCAATC 58.606 55.000 27.56 14.56 0.00 2.67
2287 2976 2.044946 AGGGCCCAATCGCAACTC 60.045 61.111 27.56 0.00 0.00 3.01
2450 3140 2.245159 TGAATAAGGCAGAGCGGATG 57.755 50.000 0.00 0.00 0.00 3.51
2461 3151 2.099756 CAGAGCGGATGACAGATGTACA 59.900 50.000 0.00 0.00 0.00 2.90
2600 3290 8.728596 TGTCCTTTATTTTATTTTTCCAGGGA 57.271 30.769 0.00 0.00 0.00 4.20
2618 3308 2.678336 GGGAAAATGAGACATCGGACAC 59.322 50.000 0.00 0.00 0.00 3.67
2647 3337 7.611855 CAGAAATGGGTTTAGTCAAGTAAGGAT 59.388 37.037 0.00 0.00 0.00 3.24
2697 3388 7.671495 AATTGGTTTCCATGCAATAAACTTC 57.329 32.000 16.61 6.57 34.34 3.01
2762 3453 6.322456 TGTTATTGTCAATGGTGGTCTGAAAA 59.678 34.615 8.39 0.00 0.00 2.29
2824 3515 3.416156 GTGAGCACTTTGATCCTCCTTT 58.584 45.455 0.00 0.00 30.48 3.11
2937 3628 7.923878 GTCCAACAGTTTTTGCCTCTTTTATTA 59.076 33.333 0.00 0.00 0.00 0.98
2972 3663 5.103086 ACCCTTTTCCTGCCTTTATGGATAT 60.103 40.000 0.00 0.00 38.35 1.63
2986 3677 8.306761 CCTTTATGGATATATTTTTCCACTGCC 58.693 37.037 0.00 0.00 44.49 4.85
3006 3697 7.535258 CACTGCCGATTATTAAATAGTGAATGC 59.465 37.037 0.00 0.00 32.93 3.56
3039 3730 3.834610 CCGACTGAGAAACTCGTATTGT 58.165 45.455 0.00 0.00 32.35 2.71
3119 3810 6.817765 TCCAATGGACACATTTTAGAAGTC 57.182 37.500 0.00 0.00 44.69 3.01
3120 3811 6.303054 TCCAATGGACACATTTTAGAAGTCA 58.697 36.000 0.00 0.00 44.69 3.41
3121 3812 6.947733 TCCAATGGACACATTTTAGAAGTCAT 59.052 34.615 0.00 0.00 44.69 3.06
3162 3853 5.637810 ACACTTATACACATGAAGTTCCACG 59.362 40.000 0.00 0.00 31.04 4.94
3216 3907 7.806487 CGATGTGCAATTTGATCAGCTTATAAT 59.194 33.333 0.00 0.00 0.00 1.28
3247 3938 4.584638 ATGGGTCACCTTACAAATAGCA 57.415 40.909 0.00 0.00 37.76 3.49
3271 3962 7.250569 CAAAACTGTATGAAGTTCAGTGTTGT 58.749 34.615 11.91 5.96 45.07 3.32
3309 4000 7.574967 GCTGCAAACTGAGCCTTAGTATTTTAA 60.575 37.037 0.00 0.00 0.00 1.52
3351 4042 7.204496 AGATTTGCTCTCTATTGAATCATGC 57.796 36.000 0.00 0.00 0.00 4.06
3391 4082 3.756933 ATTTGTGCAGCTTTTCCATGT 57.243 38.095 0.00 0.00 0.00 3.21
3428 4119 7.151976 AGAACAATTTAAATGGCTGGTGTTAC 58.848 34.615 11.69 7.54 0.00 2.50
3429 4120 5.789521 ACAATTTAAATGGCTGGTGTTACC 58.210 37.500 0.39 0.00 39.22 2.85
3430 4121 4.712122 ATTTAAATGGCTGGTGTTACCG 57.288 40.909 0.00 0.00 42.58 4.02
3431 4122 2.863132 TAAATGGCTGGTGTTACCGT 57.137 45.000 0.00 0.00 42.58 4.83
3432 4123 1.243902 AAATGGCTGGTGTTACCGTG 58.756 50.000 0.00 0.00 42.58 4.94
3433 4124 0.109723 AATGGCTGGTGTTACCGTGT 59.890 50.000 0.00 0.00 42.58 4.49
3434 4125 0.109723 ATGGCTGGTGTTACCGTGTT 59.890 50.000 0.00 0.00 42.58 3.32
3435 4126 0.757512 TGGCTGGTGTTACCGTGTTA 59.242 50.000 0.00 0.00 42.58 2.41
3470 4161 8.701895 AGTCCCTCTGTTACGAATCATAAATAA 58.298 33.333 0.00 0.00 0.00 1.40
3528 4226 4.345859 ACCGAACTTCTGACCAACATAA 57.654 40.909 0.00 0.00 0.00 1.90
3535 4233 9.476202 CGAACTTCTGACCAACATAATGATATA 57.524 33.333 0.00 0.00 0.00 0.86
3565 4263 9.758651 TGCTGTTAATATTATTGTAGTGTCGAT 57.241 29.630 0.00 0.00 0.00 3.59
3658 4356 6.209391 AGTTAAGATTTTCTGTGGTGGAATGG 59.791 38.462 0.00 0.00 0.00 3.16
3719 4417 7.944729 ACATTGGTCAGCTACATTTTAATCT 57.055 32.000 0.00 0.00 0.00 2.40
3916 4618 7.477945 AGATGCTTTCATTTCTTTGGATCTT 57.522 32.000 0.00 0.00 30.52 2.40
3941 4643 4.715534 TTGTTGGTAGAAATCTGGGACA 57.284 40.909 0.00 0.00 0.00 4.02
4052 4757 6.708054 ACTATAGTAATCCACTGAATTGCTGC 59.292 38.462 2.75 0.00 38.24 5.25
4060 4765 1.200716 ACTGAATTGCTGCCGAACATG 59.799 47.619 0.00 0.00 0.00 3.21
4064 4769 2.068837 ATTGCTGCCGAACATGTTTG 57.931 45.000 17.63 17.63 0.00 2.93
4121 4827 0.685458 GGAATGCTGGTGGGCAAGAT 60.685 55.000 0.00 0.00 45.68 2.40
4175 4881 4.725490 ACCCAGTGCTTGTGTAAGTTAAT 58.275 39.130 0.00 0.00 36.27 1.40
4177 4883 5.240844 ACCCAGTGCTTGTGTAAGTTAATTC 59.759 40.000 0.00 0.00 36.27 2.17
4189 4895 7.148154 TGTGTAAGTTAATTCTGTTGCAGTGTT 60.148 33.333 0.00 0.00 32.61 3.32
4198 4904 5.295431 TCTGTTGCAGTGTTATGTTATGC 57.705 39.130 0.00 0.00 37.40 3.14
4207 4913 5.462068 CAGTGTTATGTTATGCTTAGCGCTA 59.538 40.000 14.45 14.45 40.11 4.26
4211 4917 2.821546 TGTTATGCTTAGCGCTAGTGG 58.178 47.619 17.98 12.65 40.11 4.00
4216 4922 0.175989 GCTTAGCGCTAGTGGGTTCT 59.824 55.000 17.98 0.00 35.14 3.01
4248 5112 1.420532 TTGTACCACCTGTGTCCCCC 61.421 60.000 0.00 0.00 0.00 5.40
4249 5113 1.538135 GTACCACCTGTGTCCCCCT 60.538 63.158 0.00 0.00 0.00 4.79
4250 5114 1.537889 TACCACCTGTGTCCCCCTG 60.538 63.158 0.00 0.00 0.00 4.45
4251 5115 4.351054 CCACCTGTGTCCCCCTGC 62.351 72.222 0.00 0.00 0.00 4.85
4253 5117 4.954118 ACCTGTGTCCCCCTGCGA 62.954 66.667 0.00 0.00 0.00 5.10
4254 5118 3.402681 CCTGTGTCCCCCTGCGAT 61.403 66.667 0.00 0.00 0.00 4.58
4307 5174 7.998383 TGCTGATGGGAAATATAAGCTTTTCTA 59.002 33.333 3.20 0.00 33.85 2.10
4363 5230 8.465273 TCTCTCATTTATAGAATGGAGAACGA 57.535 34.615 12.98 4.66 34.31 3.85
4412 5279 3.562182 TGGAGCATGGAGTTAGTATCGA 58.438 45.455 0.00 0.00 0.00 3.59
4471 5341 2.488836 CCAGGTATCACCCTTTACCCT 58.511 52.381 0.00 0.00 39.75 4.34
4495 5370 4.016444 GCCCCTCTGAAATACATTTGACA 58.984 43.478 0.00 0.00 0.00 3.58
4621 5497 2.689471 TGAATGGTTGATATGGCTGTGC 59.311 45.455 0.00 0.00 0.00 4.57
4767 5644 6.147985 GGCTAGGTTAAGTTGCATATCTAAGC 59.852 42.308 0.00 0.00 0.00 3.09
4820 5705 5.862678 AGGTTAGATCTCTAGGTGCTTTC 57.137 43.478 0.00 0.00 0.00 2.62
4938 5837 8.243426 TGCATATTGTTTCTGGATTCAGTTAAC 58.757 33.333 0.00 7.70 41.59 2.01
4981 5880 9.174166 CATATCATGCATCTGATTATTTCTGGA 57.826 33.333 8.05 0.00 37.13 3.86
4982 5881 9.922477 ATATCATGCATCTGATTATTTCTGGAT 57.078 29.630 8.05 0.64 37.13 3.41
4983 5882 8.651589 ATCATGCATCTGATTATTTCTGGATT 57.348 30.769 0.00 0.00 31.82 3.01
4984 5883 8.107399 TCATGCATCTGATTATTTCTGGATTC 57.893 34.615 0.00 0.00 0.00 2.52
4985 5884 6.549912 TGCATCTGATTATTTCTGGATTCG 57.450 37.500 0.00 0.00 0.00 3.34
4990 5889 9.823098 CATCTGATTATTTCTGGATTCGAAATC 57.177 33.333 0.00 0.35 40.48 2.17
5034 5934 7.951347 ATGCAATATCAAAAAGGAGAGAAGT 57.049 32.000 0.00 0.00 0.00 3.01
5105 6006 2.026636 CCAAAAATACGACTGGGGGAGA 60.027 50.000 0.00 0.00 0.00 3.71
5185 6141 2.750350 GGATGGCGAGGTATGGGG 59.250 66.667 0.00 0.00 0.00 4.96
5186 6142 2.032681 GATGGCGAGGTATGGGGC 59.967 66.667 0.00 0.00 0.00 5.80
5210 6205 4.109675 GTGGGGACGGGTGATGGG 62.110 72.222 0.00 0.00 0.00 4.00
5236 6231 4.429212 CGTCGACGGGACATGGCA 62.429 66.667 29.70 0.00 46.42 4.92
5278 6273 4.798344 CAGGGGGCAGCTGCAGAG 62.798 72.222 37.63 19.27 44.36 3.35
5351 6349 4.314961 TGGTATAGAAGCTTGTGTGTGTG 58.685 43.478 2.10 0.00 0.00 3.82
5352 6350 4.202315 TGGTATAGAAGCTTGTGTGTGTGT 60.202 41.667 2.10 0.00 0.00 3.72
5353 6351 4.152402 GGTATAGAAGCTTGTGTGTGTGTG 59.848 45.833 2.10 0.00 0.00 3.82
5354 6352 2.113860 AGAAGCTTGTGTGTGTGTGT 57.886 45.000 2.10 0.00 0.00 3.72
5355 6353 1.739466 AGAAGCTTGTGTGTGTGTGTG 59.261 47.619 2.10 0.00 0.00 3.82
5356 6354 1.468520 GAAGCTTGTGTGTGTGTGTGT 59.531 47.619 2.10 0.00 0.00 3.72
5357 6355 0.804364 AGCTTGTGTGTGTGTGTGTG 59.196 50.000 0.00 0.00 0.00 3.82
5358 6356 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
5359 6357 1.728825 GCTTGTGTGTGTGTGTGTGTG 60.729 52.381 0.00 0.00 0.00 3.82
5375 6397 2.687425 TGTGTGTGGATGGTTTGAGTTG 59.313 45.455 0.00 0.00 0.00 3.16
5530 6557 3.840078 AGCATTGGAGCTAAAATTTGGGT 59.160 39.130 0.00 0.00 44.50 4.51
5539 6566 6.071896 GGAGCTAAAATTTGGGTATCATAGGC 60.072 42.308 0.00 0.00 0.00 3.93
5547 6575 0.977395 GGTATCATAGGCCGGAGCTT 59.023 55.000 5.05 0.00 39.73 3.74
5548 6576 1.348036 GGTATCATAGGCCGGAGCTTT 59.652 52.381 5.05 0.00 39.73 3.51
5550 6578 2.736670 ATCATAGGCCGGAGCTTTTT 57.263 45.000 5.05 0.00 39.73 1.94
5576 6604 3.247442 GGGTAAAAATGCACTAAACCGC 58.753 45.455 0.00 0.00 0.00 5.68
5577 6605 3.305471 GGGTAAAAATGCACTAAACCGCA 60.305 43.478 0.00 0.00 43.45 5.69
5578 6606 4.299978 GGTAAAAATGCACTAAACCGCAA 58.700 39.130 0.00 0.00 42.37 4.85
5579 6607 4.926832 GGTAAAAATGCACTAAACCGCAAT 59.073 37.500 0.00 0.00 42.37 3.56
5580 6608 5.061684 GGTAAAAATGCACTAAACCGCAATC 59.938 40.000 0.00 0.00 42.37 2.67
5581 6609 4.519540 AAAATGCACTAAACCGCAATCT 57.480 36.364 0.00 0.00 42.37 2.40
5582 6610 4.519540 AAATGCACTAAACCGCAATCTT 57.480 36.364 0.00 0.00 42.37 2.40
5583 6611 4.519540 AATGCACTAAACCGCAATCTTT 57.480 36.364 0.00 0.00 42.37 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.183713 TGCTCATTTTGTTGGAATCACTAGG 59.816 40.000 0.00 0.00 0.00 3.02
141 144 1.072266 TGCATCACCCAAGGTACCTT 58.928 50.000 21.96 21.96 32.11 3.50
197 200 0.722676 TCACCCACTAGATCCCCCTT 59.277 55.000 0.00 0.00 0.00 3.95
221 224 0.327964 CTCCCCCTCTTCTTCCCCAT 60.328 60.000 0.00 0.00 0.00 4.00
227 230 0.715987 AGCTCTCTCCCCCTCTTCTT 59.284 55.000 0.00 0.00 0.00 2.52
262 265 0.405585 CCCACTCATTCACCCCACTT 59.594 55.000 0.00 0.00 0.00 3.16
301 305 2.171448 CTGGATAAGGTTGTGAGGGGAG 59.829 54.545 0.00 0.00 0.00 4.30
329 333 3.435186 GCCAAGTTCTCTGGCGGC 61.435 66.667 0.00 0.00 39.06 6.53
340 344 0.889186 CTTGCAACCTACCGCCAAGT 60.889 55.000 0.00 0.00 0.00 3.16
342 346 0.605319 CTCTTGCAACCTACCGCCAA 60.605 55.000 0.00 0.00 0.00 4.52
461 466 3.762823 GGCGATAGGTAAGTACAGGCTAT 59.237 47.826 0.00 0.00 0.00 2.97
488 493 1.327690 AATTCTGCTACCGCCGGAGA 61.328 55.000 11.71 0.00 34.43 3.71
522 542 5.995282 TCGGCGTATAAAATTGGAATCTGAT 59.005 36.000 6.85 0.00 0.00 2.90
551 571 3.733727 GCGGTCAAATTTCGTGTTTTGAT 59.266 39.130 10.78 0.00 42.12 2.57
584 604 4.087892 CAGGGTCAGGGCGTCAGG 62.088 72.222 0.00 0.00 0.00 3.86
591 611 1.077787 TATTTGCGCAGGGTCAGGG 60.078 57.895 11.31 0.00 0.00 4.45
672 693 4.964241 GGGGCTCGGGGGCTATCT 62.964 72.222 0.00 0.00 40.65 1.98
733 754 4.702274 AAATTGCAGCCGGGCCCT 62.702 61.111 22.43 0.00 0.00 5.19
885 909 2.094130 GGTCGTTTTGTTTTGTGGGGAA 60.094 45.455 0.00 0.00 0.00 3.97
948 979 4.089757 CGGGGAAGGAGGGGAGGA 62.090 72.222 0.00 0.00 0.00 3.71
1135 1173 1.526887 CGGGATTGCTAGGAAGGCA 59.473 57.895 2.28 0.00 37.97 4.75
1137 1175 1.227973 GGCGGGATTGCTAGGAAGG 60.228 63.158 2.28 0.00 34.52 3.46
1146 1184 1.529244 GGGAGATTGGGCGGGATTG 60.529 63.158 0.00 0.00 0.00 2.67
1148 1186 3.178611 GGGGAGATTGGGCGGGAT 61.179 66.667 0.00 0.00 0.00 3.85
1149 1187 3.962530 AAGGGGAGATTGGGCGGGA 62.963 63.158 0.00 0.00 0.00 5.14
1201 1239 3.462678 GTCTGAGCGGGAGGGGAC 61.463 72.222 0.00 0.00 0.00 4.46
1302 1340 1.003355 ACCTCGGTGCCATTGACAG 60.003 57.895 0.00 0.00 0.00 3.51
1361 1399 6.270815 GGGTTAAGAGGAGTTCAAACAAAAC 58.729 40.000 0.00 0.00 0.00 2.43
1366 1408 3.072211 CCGGGTTAAGAGGAGTTCAAAC 58.928 50.000 0.00 0.00 0.00 2.93
1374 1416 1.941377 TAAGCACCGGGTTAAGAGGA 58.059 50.000 6.32 0.00 34.27 3.71
1381 1423 0.696501 ATGTCCTTAAGCACCGGGTT 59.303 50.000 6.32 0.00 38.49 4.11
1395 1437 7.210873 AGGAGAGTCGATTATTTACAATGTCC 58.789 38.462 0.00 0.00 0.00 4.02
1414 1456 5.067805 CGATTAAATCCCCCAAAAAGGAGAG 59.932 44.000 0.00 0.00 41.22 3.20
1429 1471 8.751335 TGCTCAAACAAAAGAAACGATTAAATC 58.249 29.630 0.00 0.00 0.00 2.17
1431 1473 7.757624 AGTGCTCAAACAAAAGAAACGATTAAA 59.242 29.630 0.00 0.00 0.00 1.52
1432 1474 7.219917 CAGTGCTCAAACAAAAGAAACGATTAA 59.780 33.333 0.00 0.00 0.00 1.40
1588 1630 9.360093 CTGGATCGGAGTGAGTAATAATAATTC 57.640 37.037 0.00 0.00 0.00 2.17
1614 1656 2.418884 GGAGATTCGTTTCCTCACTCCC 60.419 54.545 0.00 0.00 37.17 4.30
1615 1657 2.498078 AGGAGATTCGTTTCCTCACTCC 59.502 50.000 0.00 0.00 39.65 3.85
1616 1658 3.878160 AGGAGATTCGTTTCCTCACTC 57.122 47.619 0.00 0.00 39.65 3.51
1652 1723 4.210955 TGTTCAAATTTCAAATCCGCTTGC 59.789 37.500 0.00 0.00 0.00 4.01
1687 1758 6.941857 TGCATAGTTGAACTAATACACCTGA 58.058 36.000 9.35 0.00 33.89 3.86
1698 1769 6.721318 TCTTTCCCTATTGCATAGTTGAACT 58.279 36.000 2.37 2.37 0.00 3.01
1727 1798 5.305585 CAATATGGACGCTAACCAAGGTAT 58.694 41.667 0.00 0.00 40.93 2.73
1824 1896 2.292828 AAAGGAGTCCCATTGGTGTG 57.707 50.000 5.25 0.00 33.88 3.82
1840 1912 3.076621 TGCAGAGTCATGCCTTGTAAAG 58.923 45.455 10.72 0.00 45.91 1.85
1841 1913 3.076621 CTGCAGAGTCATGCCTTGTAAA 58.923 45.455 8.42 0.00 45.91 2.01
1842 1914 2.703416 CTGCAGAGTCATGCCTTGTAA 58.297 47.619 8.42 0.00 45.91 2.41
1843 1915 1.676916 GCTGCAGAGTCATGCCTTGTA 60.677 52.381 20.43 0.00 45.91 2.41
1844 1916 0.959372 GCTGCAGAGTCATGCCTTGT 60.959 55.000 20.43 0.00 45.91 3.16
1845 1917 1.801332 GCTGCAGAGTCATGCCTTG 59.199 57.895 20.43 0.00 45.91 3.61
1846 1918 1.744368 CGCTGCAGAGTCATGCCTT 60.744 57.895 20.43 0.00 45.91 4.35
1847 1919 2.125229 CGCTGCAGAGTCATGCCT 60.125 61.111 20.43 0.00 45.91 4.75
1848 1920 3.873883 GCGCTGCAGAGTCATGCC 61.874 66.667 20.43 0.00 45.91 4.40
1849 1921 2.818714 AGCGCTGCAGAGTCATGC 60.819 61.111 20.43 10.41 46.68 4.06
1850 1922 3.090656 CAGCGCTGCAGAGTCATG 58.909 61.111 26.68 11.22 0.00 3.07
1866 1938 1.070615 TGAACGCTGGTAGCAAGCA 59.929 52.632 13.97 0.00 42.58 3.91
1887 1959 1.872952 TCAAACGGACAGCAATGACTG 59.127 47.619 3.74 3.74 43.59 3.51
1896 1972 1.003118 TCCCTTCCATCAAACGGACAG 59.997 52.381 0.00 0.00 30.29 3.51
1933 2009 1.925972 GACAAGGGGAAGGGAGGCT 60.926 63.158 0.00 0.00 0.00 4.58
1987 2065 9.291664 GCGTATGTAGTCTATCTTGAAATATCC 57.708 37.037 0.00 0.00 0.00 2.59
2001 2079 8.793592 TCACTCATTATATTGCGTATGTAGTCT 58.206 33.333 0.00 0.00 0.00 3.24
2012 2090 8.023128 AGTGTGTTTGTTCACTCATTATATTGC 58.977 33.333 0.00 0.00 40.28 3.56
2039 2117 4.983215 TGTATGCAGACACGTTTTAGTG 57.017 40.909 10.75 0.00 46.83 2.74
2046 2428 5.660460 TCAATTAGATGTATGCAGACACGT 58.340 37.500 17.79 9.44 30.52 4.49
2138 2814 4.021456 GGTGTTTTACTAGCAATTTGGGCT 60.021 41.667 0.00 0.00 45.18 5.19
2139 2815 4.242475 GGTGTTTTACTAGCAATTTGGGC 58.758 43.478 0.00 0.00 0.00 5.36
2161 2837 1.681264 GATTAAATGGCTGAACCGGGG 59.319 52.381 6.32 0.00 43.94 5.73
2166 2842 4.381932 CCCAACCTGATTAAATGGCTGAAC 60.382 45.833 0.00 0.00 0.00 3.18
2258 2947 1.745489 GGGCCCTCTAAACTGCGTG 60.745 63.158 17.04 0.00 0.00 5.34
2300 2989 4.707448 ACCATTTCAAACCACACTACACAA 59.293 37.500 0.00 0.00 0.00 3.33
2360 3050 7.849804 TTAGATAAACAACAAGCTGATCTCC 57.150 36.000 0.00 0.00 0.00 3.71
2450 3140 8.886719 TCATCAAGAATGAATTGTACATCTGTC 58.113 33.333 0.00 0.00 41.49 3.51
2600 3290 5.047306 TCTGTAGTGTCCGATGTCTCATTTT 60.047 40.000 0.00 0.00 0.00 1.82
2618 3308 8.842358 TTACTTGACTAAACCCATTTCTGTAG 57.158 34.615 0.00 0.00 0.00 2.74
2647 3337 7.178573 TCCCATCATATGACAACCAGTTTTAA 58.821 34.615 7.78 0.00 0.00 1.52
2655 3345 5.363580 ACCAATTTCCCATCATATGACAACC 59.636 40.000 7.78 0.00 0.00 3.77
2656 3346 6.469782 ACCAATTTCCCATCATATGACAAC 57.530 37.500 7.78 0.00 0.00 3.32
2697 3388 7.406553 TGTAAACAAAAGAAGACGAAGATGTG 58.593 34.615 0.00 0.00 0.00 3.21
2762 3453 0.108585 TGACGCTTCCCTTGAAAGCT 59.891 50.000 6.32 0.00 0.00 3.74
3006 3697 4.442375 TCTCAGTCGGCTTAGAAAGAAG 57.558 45.455 0.00 0.00 0.00 2.85
3144 3835 4.801330 TCTCGTGGAACTTCATGTGTAT 57.199 40.909 0.00 0.00 31.75 2.29
3162 3853 2.715737 AGAGTCGCACAGAAGTTCTC 57.284 50.000 1.26 0.00 0.00 2.87
3227 3918 4.374689 TTGCTATTTGTAAGGTGACCCA 57.625 40.909 0.00 0.00 0.00 4.51
3247 3938 7.250569 CACAACACTGAACTTCATACAGTTTT 58.749 34.615 0.00 0.00 41.93 2.43
3309 4000 8.526147 AGCAAATCTTTATACAGCAAACTTCAT 58.474 29.630 0.00 0.00 0.00 2.57
3351 4042 9.787532 CACAAATACAAATCACCTTTATAGTGG 57.212 33.333 0.00 0.00 35.87 4.00
3428 4119 1.792006 GACTGTTGTCCCTAACACGG 58.208 55.000 0.00 0.00 37.70 4.94
3496 4187 6.761714 GGTCAGAAGTTCGGTAATCACATAAT 59.238 38.462 2.86 0.00 0.00 1.28
3497 4188 6.103997 GGTCAGAAGTTCGGTAATCACATAA 58.896 40.000 2.86 0.00 0.00 1.90
3535 4233 9.627123 ACACTACAATAATATTAACAGCACCAT 57.373 29.630 0.00 0.00 0.00 3.55
3536 4234 9.104965 GACACTACAATAATATTAACAGCACCA 57.895 33.333 0.00 0.00 0.00 4.17
3552 4250 6.313905 GGATGAGAAACAATCGACACTACAAT 59.686 38.462 0.00 0.00 0.00 2.71
3565 4263 4.037327 TCAACGCATTTGGATGAGAAACAA 59.963 37.500 0.00 0.00 36.67 2.83
3604 4302 3.004210 ACACGCATCATACAGCAAAACAA 59.996 39.130 0.00 0.00 0.00 2.83
3719 4417 9.905713 AGCCTGACAAGAATTCATATAAAGTAA 57.094 29.630 8.44 0.00 0.00 2.24
3883 4585 9.774413 AAAGAAATGAAAGCATCTTCAGAAATT 57.226 25.926 2.90 0.00 38.66 1.82
3916 4618 7.175990 GTGTCCCAGATTTCTACCAACAATAAA 59.824 37.037 0.00 0.00 0.00 1.40
3937 4639 2.417719 CAGTTACTTGAGGCTGTGTCC 58.582 52.381 0.00 0.00 0.00 4.02
3941 4643 4.256920 CATTAGCAGTTACTTGAGGCTGT 58.743 43.478 5.36 0.00 36.10 4.40
4031 4736 4.199310 GGCAGCAATTCAGTGGATTACTA 58.801 43.478 0.00 0.00 37.60 1.82
4032 4737 3.019564 GGCAGCAATTCAGTGGATTACT 58.980 45.455 0.00 0.00 41.36 2.24
4033 4738 2.223340 CGGCAGCAATTCAGTGGATTAC 60.223 50.000 0.00 0.00 0.00 1.89
4034 4739 2.016318 CGGCAGCAATTCAGTGGATTA 58.984 47.619 0.00 0.00 0.00 1.75
4052 4757 0.804989 GGAGGAGCAAACATGTTCGG 59.195 55.000 12.39 8.63 0.00 4.30
4175 4881 5.473162 AGCATAACATAACACTGCAACAGAA 59.527 36.000 0.78 0.00 35.32 3.02
4177 4883 5.300969 AGCATAACATAACACTGCAACAG 57.699 39.130 0.00 0.00 35.32 3.16
4198 4904 2.674796 AAGAACCCACTAGCGCTAAG 57.325 50.000 19.37 13.56 0.00 2.18
4363 5230 1.542915 GCAGGAACACAATGCAGTCAT 59.457 47.619 0.00 0.00 39.75 3.06
4412 5279 0.751643 AAGACGGCTTGCAACCTGTT 60.752 50.000 0.45 2.32 31.83 3.16
4471 5341 3.011144 TCAAATGTATTTCAGAGGGGCCA 59.989 43.478 4.39 0.00 0.00 5.36
4511 5386 5.424121 CAGTCGACCTGTGAAAAAGAAAT 57.576 39.130 13.01 0.00 36.37 2.17
4767 5644 3.487376 CCATTACACATAAGGCGCAAGTG 60.487 47.826 10.83 12.23 41.68 3.16
4847 5732 1.741706 CACACAGGCATGGATGTTCTC 59.258 52.381 2.31 0.00 0.00 2.87
4938 5837 5.347342 TGATATGCATTTTTAGGGCAAACG 58.653 37.500 3.54 0.00 41.43 3.60
4985 5884 0.036388 TGAGGTGCACCGAGGATTTC 60.036 55.000 29.68 19.64 42.08 2.17
4990 5889 0.250295 TCTTTTGAGGTGCACCGAGG 60.250 55.000 29.68 16.83 42.08 4.63
5105 6006 3.710722 CCAAGCTCCTCCTGCCGT 61.711 66.667 0.00 0.00 0.00 5.68
5109 6011 4.479993 CCCGCCAAGCTCCTCCTG 62.480 72.222 0.00 0.00 0.00 3.86
5190 6146 3.702048 ATCACCCGTCCCCACACG 61.702 66.667 0.00 0.00 39.61 4.49
5191 6147 2.046314 CATCACCCGTCCCCACAC 60.046 66.667 0.00 0.00 0.00 3.82
5192 6148 3.326578 CCATCACCCGTCCCCACA 61.327 66.667 0.00 0.00 0.00 4.17
5193 6149 4.109675 CCCATCACCCGTCCCCAC 62.110 72.222 0.00 0.00 0.00 4.61
5274 6269 1.755959 CTCATCCCTCAGTGACCTCTG 59.244 57.143 0.00 0.00 36.85 3.35
5275 6270 1.342874 CCTCATCCCTCAGTGACCTCT 60.343 57.143 0.00 0.00 0.00 3.69
5276 6271 1.118838 CCTCATCCCTCAGTGACCTC 58.881 60.000 0.00 0.00 0.00 3.85
5277 6272 0.415429 ACCTCATCCCTCAGTGACCT 59.585 55.000 0.00 0.00 0.00 3.85
5278 6273 2.160721 TACCTCATCCCTCAGTGACC 57.839 55.000 0.00 0.00 0.00 4.02
5351 6349 2.020720 TCAAACCATCCACACACACAC 58.979 47.619 0.00 0.00 0.00 3.82
5352 6350 2.296792 CTCAAACCATCCACACACACA 58.703 47.619 0.00 0.00 0.00 3.72
5353 6351 2.297701 ACTCAAACCATCCACACACAC 58.702 47.619 0.00 0.00 0.00 3.82
5354 6352 2.687425 CAACTCAAACCATCCACACACA 59.313 45.455 0.00 0.00 0.00 3.72
5355 6353 2.687935 ACAACTCAAACCATCCACACAC 59.312 45.455 0.00 0.00 0.00 3.82
5356 6354 3.011566 ACAACTCAAACCATCCACACA 57.988 42.857 0.00 0.00 0.00 3.72
5357 6355 3.059188 CGTACAACTCAAACCATCCACAC 60.059 47.826 0.00 0.00 0.00 3.82
5358 6356 3.135225 CGTACAACTCAAACCATCCACA 58.865 45.455 0.00 0.00 0.00 4.17
5359 6357 2.095919 GCGTACAACTCAAACCATCCAC 60.096 50.000 0.00 0.00 0.00 4.02
5375 6397 3.180387 ACTTTTTAGTTCGTCGTGCGTAC 59.820 43.478 0.00 0.00 42.13 3.67
5393 6415 0.100503 GTGCGTTGGAACTGCACTTT 59.899 50.000 21.51 0.00 46.10 2.66
5431 6453 1.003118 TGCGGGTGCTATCTTCTTTGT 59.997 47.619 0.00 0.00 43.34 2.83
5432 6454 1.737838 TGCGGGTGCTATCTTCTTTG 58.262 50.000 0.00 0.00 43.34 2.77
5435 6457 1.123077 TCATGCGGGTGCTATCTTCT 58.877 50.000 0.00 0.00 43.34 2.85
5436 6458 2.175878 ATCATGCGGGTGCTATCTTC 57.824 50.000 0.00 0.00 43.34 2.87
5438 6460 2.495270 CTCTATCATGCGGGTGCTATCT 59.505 50.000 0.00 0.00 43.34 1.98
5439 6461 2.886081 CTCTATCATGCGGGTGCTATC 58.114 52.381 0.00 0.00 43.34 2.08
5440 6462 1.066573 GCTCTATCATGCGGGTGCTAT 60.067 52.381 0.00 0.00 43.34 2.97
5530 6557 3.857157 AAAAAGCTCCGGCCTATGATA 57.143 42.857 0.00 0.00 39.73 2.15
5550 6578 6.258068 CGGTTTAGTGCATTTTTACCCAAAAA 59.742 34.615 0.00 0.00 45.22 1.94
5576 6604 3.538379 GGCCTTGCCCAAAAGATTG 57.462 52.632 0.00 0.00 44.06 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.