Multiple sequence alignment - TraesCS6B01G261300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G261300 chr6B 100.000 2114 0 0 1577 3690 471179472 471177359 0.000000e+00 3904
1 TraesCS6B01G261300 chr6B 93.710 1892 81 13 1805 3687 157567652 157565790 0.000000e+00 2800
2 TraesCS6B01G261300 chr6B 100.000 1189 0 0 1 1189 471181048 471179860 0.000000e+00 2196
3 TraesCS6B01G261300 chr6B 88.646 458 39 6 721 1175 157568369 157567922 2.510000e-151 545
4 TraesCS6B01G261300 chr2A 96.083 1889 67 6 1805 3688 628363026 628361140 0.000000e+00 3072
5 TraesCS6B01G261300 chr2A 89.834 482 35 4 721 1189 628363718 628363238 1.130000e-169 606
6 TraesCS6B01G261300 chr2A 96.951 164 5 0 1577 1740 628363184 628363021 3.630000e-70 276
7 TraesCS6B01G261300 chr2A 87.500 136 16 1 560 695 211704976 211704842 4.930000e-34 156
8 TraesCS6B01G261300 chr3A 96.182 1886 53 6 1805 3688 730385454 730387322 0.000000e+00 3066
9 TraesCS6B01G261300 chr3A 92.355 484 25 2 718 1189 730384759 730385242 0.000000e+00 678
10 TraesCS6B01G261300 chr3A 95.732 164 7 0 1577 1740 730385296 730385459 7.860000e-67 265
11 TraesCS6B01G261300 chr3A 89.241 158 16 1 560 717 730384575 730384731 2.910000e-46 196
12 TraesCS6B01G261300 chr3A 86.755 151 18 2 569 718 103605473 103605324 2.280000e-37 167
13 TraesCS6B01G261300 chr7A 96.873 1759 48 6 1935 3688 439786390 439784634 0.000000e+00 2937
14 TraesCS6B01G261300 chr7A 92.100 481 26 3 721 1189 439787337 439786857 0.000000e+00 667
15 TraesCS6B01G261300 chr7A 97.516 161 4 0 1580 1740 439786800 439786640 3.630000e-70 276
16 TraesCS6B01G261300 chr7A 96.970 132 4 0 1805 1936 439786645 439786514 4.800000e-54 222
17 TraesCS6B01G261300 chr7B 96.815 1758 50 6 1935 3688 645515182 645513427 0.000000e+00 2931
18 TraesCS6B01G261300 chr7B 93.767 1893 97 15 1805 3687 149938141 149936260 0.000000e+00 2822
19 TraesCS6B01G261300 chr7B 93.008 472 28 5 721 1189 645516118 645515649 0.000000e+00 684
20 TraesCS6B01G261300 chr7B 96.951 164 5 0 1577 1740 645515595 645515432 3.630000e-70 276
21 TraesCS6B01G261300 chr7B 83.019 159 25 2 560 718 408371369 408371525 3.840000e-30 143
22 TraesCS6B01G261300 chr5A 96.646 1759 52 7 1935 3688 311019719 311017963 0.000000e+00 2915
23 TraesCS6B01G261300 chr5A 92.161 472 32 5 721 1189 311020655 311020186 0.000000e+00 662
24 TraesCS6B01G261300 chr5A 97.561 164 4 0 1577 1740 311020132 311019969 7.800000e-72 281
25 TraesCS6B01G261300 chr5A 96.970 132 4 0 1805 1936 311019974 311019843 4.800000e-54 222
26 TraesCS6B01G261300 chr5A 87.500 136 16 1 560 695 673723279 673723413 4.930000e-34 156
27 TraesCS6B01G261300 chr2B 94.512 1895 84 14 1805 3687 38060700 38058814 0.000000e+00 2905
28 TraesCS6B01G261300 chr2B 96.406 1753 57 6 1805 3554 674296156 674294407 0.000000e+00 2883
29 TraesCS6B01G261300 chr2B 89.733 487 31 6 721 1189 674296853 674296368 4.080000e-169 604
30 TraesCS6B01G261300 chr2B 96.914 162 5 0 1579 1740 674296312 674296151 4.700000e-69 272
31 TraesCS6B01G261300 chr5B 96.018 1758 52 7 1935 3688 394253612 394255355 0.000000e+00 2843
32 TraesCS6B01G261300 chr5B 92.812 473 27 7 721 1189 394252676 394253145 0.000000e+00 678
33 TraesCS6B01G261300 chr5B 97.561 164 4 0 1577 1740 394253199 394253362 7.800000e-72 281
34 TraesCS6B01G261300 chr5B 97.561 164 4 0 1577 1740 394255857 394256020 7.800000e-72 281
35 TraesCS6B01G261300 chr4A 96.902 936 25 4 2756 3688 699610129 699611063 0.000000e+00 1565
36 TraesCS6B01G261300 chr4A 93.126 451 20 5 3249 3688 527128061 527128511 0.000000e+00 651
37 TraesCS6B01G261300 chr4A 86.250 160 20 2 560 718 152738286 152738128 4.900000e-39 172
38 TraesCS6B01G261300 chr6A 95.929 958 23 4 1805 2761 550724036 550723094 0.000000e+00 1539
39 TraesCS6B01G261300 chr6A 97.327 449 12 0 1 449 409083547 409083099 0.000000e+00 763
40 TraesCS6B01G261300 chr6A 95.110 409 20 0 781 1189 550724656 550724248 0.000000e+00 645
41 TraesCS6B01G261300 chr6A 97.561 164 4 0 1577 1740 550724194 550724031 7.800000e-72 281
42 TraesCS6B01G261300 chr6A 96.970 99 3 0 450 548 100262447 100262349 2.280000e-37 167
43 TraesCS6B01G261300 chr6A 98.276 58 1 0 721 778 550729618 550729561 6.520000e-18 102
44 TraesCS6B01G261300 chr6D 96.782 435 11 3 1 434 305364906 305365338 0.000000e+00 723
45 TraesCS6B01G261300 chr2D 86.250 160 19 3 560 718 432025967 432025810 1.760000e-38 171
46 TraesCS6B01G261300 chr4B 88.235 136 15 1 560 695 496426807 496426941 1.060000e-35 161
47 TraesCS6B01G261300 chr1A 94.949 99 5 0 450 548 530721462 530721364 4.930000e-34 156
48 TraesCS6B01G261300 chrUn 88.983 118 12 1 560 677 959634 959518 1.070000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G261300 chr6B 471177359 471181048 3689 True 3050.000000 3904 100.000000 1 3690 2 chr6B.!!$R2 3689
1 TraesCS6B01G261300 chr6B 157565790 157568369 2579 True 1672.500000 2800 91.178000 721 3687 2 chr6B.!!$R1 2966
2 TraesCS6B01G261300 chr2A 628361140 628363718 2578 True 1318.000000 3072 94.289333 721 3688 3 chr2A.!!$R2 2967
3 TraesCS6B01G261300 chr3A 730384575 730387322 2747 False 1051.250000 3066 93.377500 560 3688 4 chr3A.!!$F1 3128
4 TraesCS6B01G261300 chr7A 439784634 439787337 2703 True 1025.500000 2937 95.864750 721 3688 4 chr7A.!!$R1 2967
5 TraesCS6B01G261300 chr7B 149936260 149938141 1881 True 2822.000000 2822 93.767000 1805 3687 1 chr7B.!!$R1 1882
6 TraesCS6B01G261300 chr7B 645513427 645516118 2691 True 1297.000000 2931 95.591333 721 3688 3 chr7B.!!$R2 2967
7 TraesCS6B01G261300 chr5A 311017963 311020655 2692 True 1020.000000 2915 95.834500 721 3688 4 chr5A.!!$R1 2967
8 TraesCS6B01G261300 chr2B 38058814 38060700 1886 True 2905.000000 2905 94.512000 1805 3687 1 chr2B.!!$R1 1882
9 TraesCS6B01G261300 chr2B 674294407 674296853 2446 True 1253.000000 2883 94.351000 721 3554 3 chr2B.!!$R2 2833
10 TraesCS6B01G261300 chr5B 394252676 394256020 3344 False 1020.750000 2843 95.988000 721 3688 4 chr5B.!!$F1 2967
11 TraesCS6B01G261300 chr4A 699610129 699611063 934 False 1565.000000 1565 96.902000 2756 3688 1 chr4A.!!$F2 932
12 TraesCS6B01G261300 chr6A 550723094 550724656 1562 True 821.666667 1539 96.200000 781 2761 3 chr6A.!!$R4 1980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.032017 AGATAAGAGGAGGCCGTGGT 60.032 55.0 0.0 0.0 0.00 4.16 F
364 365 0.032117 TGGTGGGATCGAGATCTGGT 60.032 55.0 0.0 0.0 37.92 4.00 F
372 373 0.106469 TCGAGATCTGGTGAGGGGAG 60.106 60.0 0.0 0.0 0.00 4.30 F
457 458 0.109226 AGCGGAACTACGAGAAGTGC 60.109 55.0 0.0 0.0 35.47 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2182 1.216064 TCGGTAGCTGGTACTCCCTA 58.784 55.000 15.74 0.0 0.00 3.53 R
2324 2564 4.260139 TGCATGAATTTCAGCACAACAT 57.740 36.364 15.15 0.0 29.93 2.71 R
2521 2761 2.644992 GCAAAGGCGTTGGGACTG 59.355 61.111 14.83 0.0 37.73 3.51 R
2824 3065 6.640518 AGTCTTCCTTTCAGCGTGATAATTA 58.359 36.000 0.00 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.220413 TGTAGAGGCGGTCGAGAG 57.780 61.111 0.00 0.00 0.00 3.20
18 19 2.113433 TGTAGAGGCGGTCGAGAGC 61.113 63.158 3.64 3.64 0.00 4.09
40 41 4.468689 GGGCGGTCGGGGAAGAAG 62.469 72.222 0.00 0.00 0.00 2.85
41 42 3.387947 GGCGGTCGGGGAAGAAGA 61.388 66.667 0.00 0.00 0.00 2.87
42 43 2.184579 GCGGTCGGGGAAGAAGAG 59.815 66.667 0.00 0.00 0.00 2.85
43 44 2.184579 CGGTCGGGGAAGAAGAGC 59.815 66.667 0.00 0.00 0.00 4.09
44 45 2.184579 GGTCGGGGAAGAAGAGCG 59.815 66.667 0.00 0.00 0.00 5.03
45 46 2.184579 GTCGGGGAAGAAGAGCGG 59.815 66.667 0.00 0.00 0.00 5.52
46 47 3.075005 TCGGGGAAGAAGAGCGGG 61.075 66.667 0.00 0.00 0.00 6.13
47 48 3.075005 CGGGGAAGAAGAGCGGGA 61.075 66.667 0.00 0.00 0.00 5.14
48 49 2.904131 GGGGAAGAAGAGCGGGAG 59.096 66.667 0.00 0.00 0.00 4.30
49 50 2.736826 GGGGAAGAAGAGCGGGAGG 61.737 68.421 0.00 0.00 0.00 4.30
50 51 1.686110 GGGAAGAAGAGCGGGAGGA 60.686 63.158 0.00 0.00 0.00 3.71
51 52 1.681486 GGGAAGAAGAGCGGGAGGAG 61.681 65.000 0.00 0.00 0.00 3.69
52 53 0.684805 GGAAGAAGAGCGGGAGGAGA 60.685 60.000 0.00 0.00 0.00 3.71
53 54 0.744281 GAAGAAGAGCGGGAGGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
54 55 1.326951 AAGAAGAGCGGGAGGAGAGC 61.327 60.000 0.00 0.00 0.00 4.09
55 56 3.132481 GAAGAGCGGGAGGAGAGCG 62.132 68.421 0.00 0.00 35.78 5.03
56 57 3.948004 AAGAGCGGGAGGAGAGCGT 62.948 63.158 0.00 0.00 35.78 5.07
57 58 4.200283 GAGCGGGAGGAGAGCGTG 62.200 72.222 0.00 0.00 35.78 5.34
60 61 4.504916 CGGGAGGAGAGCGTGCAG 62.505 72.222 0.00 0.00 0.00 4.41
61 62 4.154347 GGGAGGAGAGCGTGCAGG 62.154 72.222 1.01 1.01 0.00 4.85
62 63 3.071206 GGAGGAGAGCGTGCAGGA 61.071 66.667 11.29 0.00 0.00 3.86
63 64 2.493973 GAGGAGAGCGTGCAGGAG 59.506 66.667 11.29 0.00 0.00 3.69
64 65 3.073735 AGGAGAGCGTGCAGGAGG 61.074 66.667 11.29 0.00 0.00 4.30
65 66 4.828925 GGAGAGCGTGCAGGAGGC 62.829 72.222 11.29 0.00 45.13 4.70
75 76 3.233355 GCAGGAGGCGAAGAAGAAA 57.767 52.632 0.00 0.00 0.00 2.52
76 77 1.082690 GCAGGAGGCGAAGAAGAAAG 58.917 55.000 0.00 0.00 0.00 2.62
77 78 1.731720 CAGGAGGCGAAGAAGAAAGG 58.268 55.000 0.00 0.00 0.00 3.11
78 79 0.615850 AGGAGGCGAAGAAGAAAGGG 59.384 55.000 0.00 0.00 0.00 3.95
79 80 0.393132 GGAGGCGAAGAAGAAAGGGG 60.393 60.000 0.00 0.00 0.00 4.79
80 81 0.393132 GAGGCGAAGAAGAAAGGGGG 60.393 60.000 0.00 0.00 0.00 5.40
110 111 2.186903 CGGGATCGGGGTGAAGTG 59.813 66.667 0.00 0.00 0.00 3.16
111 112 2.355986 CGGGATCGGGGTGAAGTGA 61.356 63.158 0.00 0.00 0.00 3.41
112 113 1.522569 GGGATCGGGGTGAAGTGAG 59.477 63.158 0.00 0.00 0.00 3.51
113 114 1.522569 GGATCGGGGTGAAGTGAGG 59.477 63.158 0.00 0.00 0.00 3.86
114 115 1.153349 GATCGGGGTGAAGTGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
115 116 2.595009 GATCGGGGTGAAGTGAGGCC 62.595 65.000 0.00 0.00 0.00 5.19
116 117 3.636231 CGGGGTGAAGTGAGGCCA 61.636 66.667 5.01 0.00 0.00 5.36
117 118 2.352805 GGGGTGAAGTGAGGCCAG 59.647 66.667 5.01 0.00 0.00 4.85
118 119 2.529744 GGGGTGAAGTGAGGCCAGT 61.530 63.158 5.01 0.00 0.00 4.00
119 120 1.198759 GGGGTGAAGTGAGGCCAGTA 61.199 60.000 5.01 0.00 0.00 2.74
120 121 0.250513 GGGTGAAGTGAGGCCAGTAG 59.749 60.000 5.01 0.00 0.00 2.57
121 122 0.250513 GGTGAAGTGAGGCCAGTAGG 59.749 60.000 5.01 0.00 38.23 3.18
122 123 0.250513 GTGAAGTGAGGCCAGTAGGG 59.749 60.000 5.01 0.00 40.85 3.53
160 161 4.521062 CGGAGCTTGGCGAGGGAG 62.521 72.222 3.44 0.00 0.00 4.30
161 162 3.077556 GGAGCTTGGCGAGGGAGA 61.078 66.667 3.44 0.00 0.00 3.71
162 163 2.498726 GAGCTTGGCGAGGGAGAG 59.501 66.667 3.44 0.00 0.00 3.20
163 164 3.731653 GAGCTTGGCGAGGGAGAGC 62.732 68.421 3.44 0.00 0.00 4.09
171 172 3.591835 GAGGGAGAGCGCCGAGAG 61.592 72.222 2.29 0.00 0.00 3.20
181 182 3.929389 GCCGAGAGCGCAGATAAG 58.071 61.111 11.47 0.00 35.83 1.73
182 183 1.360551 GCCGAGAGCGCAGATAAGA 59.639 57.895 11.47 0.00 35.83 2.10
183 184 0.662970 GCCGAGAGCGCAGATAAGAG 60.663 60.000 11.47 0.00 35.83 2.85
184 185 0.039617 CCGAGAGCGCAGATAAGAGG 60.040 60.000 11.47 0.00 35.83 3.69
185 186 0.947960 CGAGAGCGCAGATAAGAGGA 59.052 55.000 11.47 0.00 0.00 3.71
186 187 1.069296 CGAGAGCGCAGATAAGAGGAG 60.069 57.143 11.47 0.00 0.00 3.69
187 188 1.269448 GAGAGCGCAGATAAGAGGAGG 59.731 57.143 11.47 0.00 0.00 4.30
188 189 0.319469 GAGCGCAGATAAGAGGAGGC 60.319 60.000 11.47 0.00 0.00 4.70
189 190 1.301322 GCGCAGATAAGAGGAGGCC 60.301 63.158 0.30 0.00 0.00 5.19
190 191 1.006805 CGCAGATAAGAGGAGGCCG 60.007 63.158 0.00 0.00 0.00 6.13
191 192 1.739338 CGCAGATAAGAGGAGGCCGT 61.739 60.000 0.00 0.00 0.00 5.68
192 193 0.249657 GCAGATAAGAGGAGGCCGTG 60.250 60.000 0.00 0.00 0.00 4.94
193 194 0.390860 CAGATAAGAGGAGGCCGTGG 59.609 60.000 0.00 0.00 0.00 4.94
194 195 0.032017 AGATAAGAGGAGGCCGTGGT 60.032 55.000 0.00 0.00 0.00 4.16
195 196 0.105039 GATAAGAGGAGGCCGTGGTG 59.895 60.000 0.00 0.00 0.00 4.17
196 197 1.972660 ATAAGAGGAGGCCGTGGTGC 61.973 60.000 0.00 0.00 0.00 5.01
214 215 4.489771 GGGTGATGGGCGTGGGAG 62.490 72.222 0.00 0.00 0.00 4.30
215 216 4.489771 GGTGATGGGCGTGGGAGG 62.490 72.222 0.00 0.00 0.00 4.30
216 217 4.489771 GTGATGGGCGTGGGAGGG 62.490 72.222 0.00 0.00 0.00 4.30
225 226 3.775654 GTGGGAGGGGTGAGCGAG 61.776 72.222 0.00 0.00 0.00 5.03
228 229 3.003763 GGAGGGGTGAGCGAGGTT 61.004 66.667 0.00 0.00 0.00 3.50
229 230 2.579738 GAGGGGTGAGCGAGGTTC 59.420 66.667 0.00 0.00 0.00 3.62
230 231 3.358076 GAGGGGTGAGCGAGGTTCG 62.358 68.421 0.00 0.00 43.89 3.95
252 253 3.730761 CAGCGCTTGCCACTGTCC 61.731 66.667 7.50 0.00 40.41 4.02
253 254 4.254709 AGCGCTTGCCACTGTCCA 62.255 61.111 2.64 0.00 40.41 4.02
254 255 4.030452 GCGCTTGCCACTGTCCAC 62.030 66.667 0.00 0.00 0.00 4.02
255 256 3.716006 CGCTTGCCACTGTCCACG 61.716 66.667 0.00 0.00 0.00 4.94
256 257 4.030452 GCTTGCCACTGTCCACGC 62.030 66.667 0.00 0.00 0.00 5.34
257 258 3.716006 CTTGCCACTGTCCACGCG 61.716 66.667 3.53 3.53 0.00 6.01
258 259 4.539083 TTGCCACTGTCCACGCGT 62.539 61.111 5.58 5.58 0.00 6.01
268 269 2.494445 CCACGCGTGGCTAGATCA 59.506 61.111 42.21 0.00 44.73 2.92
269 270 1.068083 CCACGCGTGGCTAGATCAT 59.932 57.895 42.21 0.00 44.73 2.45
270 271 0.313987 CCACGCGTGGCTAGATCATA 59.686 55.000 42.21 0.00 44.73 2.15
271 272 1.667177 CCACGCGTGGCTAGATCATAG 60.667 57.143 42.21 16.69 44.73 2.23
272 273 0.598562 ACGCGTGGCTAGATCATAGG 59.401 55.000 12.93 0.00 0.00 2.57
273 274 0.109086 CGCGTGGCTAGATCATAGGG 60.109 60.000 0.00 0.00 0.00 3.53
274 275 0.247736 GCGTGGCTAGATCATAGGGG 59.752 60.000 0.00 0.00 0.00 4.79
275 276 1.924731 CGTGGCTAGATCATAGGGGA 58.075 55.000 0.00 0.00 0.00 4.81
276 277 2.461695 CGTGGCTAGATCATAGGGGAT 58.538 52.381 0.00 0.00 0.00 3.85
277 278 2.167281 CGTGGCTAGATCATAGGGGATG 59.833 54.545 0.00 0.00 36.82 3.51
278 279 2.503356 GTGGCTAGATCATAGGGGATGG 59.497 54.545 0.00 0.00 36.08 3.51
279 280 2.386811 TGGCTAGATCATAGGGGATGGA 59.613 50.000 0.00 0.00 36.08 3.41
280 281 3.037549 GGCTAGATCATAGGGGATGGAG 58.962 54.545 0.00 0.00 36.08 3.86
281 282 3.310214 GGCTAGATCATAGGGGATGGAGA 60.310 52.174 0.00 0.00 36.08 3.71
282 283 3.960102 GCTAGATCATAGGGGATGGAGAG 59.040 52.174 0.00 0.00 36.08 3.20
283 284 3.488355 AGATCATAGGGGATGGAGAGG 57.512 52.381 0.00 0.00 36.08 3.69
284 285 2.732507 AGATCATAGGGGATGGAGAGGT 59.267 50.000 0.00 0.00 36.08 3.85
285 286 2.704190 TCATAGGGGATGGAGAGGTC 57.296 55.000 0.00 0.00 36.08 3.85
286 287 1.203063 TCATAGGGGATGGAGAGGTCG 60.203 57.143 0.00 0.00 36.08 4.79
287 288 0.115349 ATAGGGGATGGAGAGGTCGG 59.885 60.000 0.00 0.00 0.00 4.79
288 289 2.020100 TAGGGGATGGAGAGGTCGGG 62.020 65.000 0.00 0.00 0.00 5.14
289 290 3.551407 GGGATGGAGAGGTCGGGC 61.551 72.222 0.00 0.00 0.00 6.13
290 291 2.764128 GGATGGAGAGGTCGGGCA 60.764 66.667 0.00 0.00 0.00 5.36
291 292 2.801631 GGATGGAGAGGTCGGGCAG 61.802 68.421 0.00 0.00 0.00 4.85
292 293 1.758514 GATGGAGAGGTCGGGCAGA 60.759 63.158 0.00 0.00 0.00 4.26
293 294 1.743321 GATGGAGAGGTCGGGCAGAG 61.743 65.000 0.00 0.00 0.00 3.35
294 295 3.151022 GGAGAGGTCGGGCAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
295 296 3.151022 GAGAGGTCGGGCAGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
296 297 4.787280 AGAGGTCGGGCAGAGGGG 62.787 72.222 0.00 0.00 0.00 4.79
335 336 3.787001 GAGACCCCAGGGCGGAAG 61.787 72.222 0.00 0.00 39.32 3.46
336 337 4.658786 AGACCCCAGGGCGGAAGT 62.659 66.667 0.00 0.00 39.32 3.01
337 338 4.410400 GACCCCAGGGCGGAAGTG 62.410 72.222 0.00 0.00 39.32 3.16
342 343 4.020617 CAGGGCGGAAGTGGCAGA 62.021 66.667 0.00 0.00 35.84 4.26
343 344 4.021925 AGGGCGGAAGTGGCAGAC 62.022 66.667 0.00 0.00 35.84 3.51
344 345 4.329545 GGGCGGAAGTGGCAGACA 62.330 66.667 0.00 0.00 35.84 3.41
345 346 2.045926 GGCGGAAGTGGCAGACAT 60.046 61.111 0.00 0.00 0.00 3.06
346 347 2.401766 GGCGGAAGTGGCAGACATG 61.402 63.158 0.00 0.00 0.00 3.21
347 348 2.401766 GCGGAAGTGGCAGACATGG 61.402 63.158 0.00 0.00 0.00 3.66
348 349 1.003355 CGGAAGTGGCAGACATGGT 60.003 57.895 0.00 0.00 0.00 3.55
349 350 1.300971 CGGAAGTGGCAGACATGGTG 61.301 60.000 0.00 0.00 0.00 4.17
350 351 0.962356 GGAAGTGGCAGACATGGTGG 60.962 60.000 0.00 0.00 0.00 4.61
351 352 0.962356 GAAGTGGCAGACATGGTGGG 60.962 60.000 0.00 0.00 0.00 4.61
352 353 1.426251 AAGTGGCAGACATGGTGGGA 61.426 55.000 0.00 0.00 0.00 4.37
353 354 1.210204 AGTGGCAGACATGGTGGGAT 61.210 55.000 0.00 0.00 0.00 3.85
354 355 0.749454 GTGGCAGACATGGTGGGATC 60.749 60.000 0.00 0.00 0.00 3.36
355 356 1.524621 GGCAGACATGGTGGGATCG 60.525 63.158 0.00 0.00 0.00 3.69
356 357 1.522092 GCAGACATGGTGGGATCGA 59.478 57.895 0.00 0.00 0.00 3.59
357 358 0.531532 GCAGACATGGTGGGATCGAG 60.532 60.000 0.00 0.00 0.00 4.04
358 359 1.114627 CAGACATGGTGGGATCGAGA 58.885 55.000 0.00 0.00 0.00 4.04
359 360 1.690893 CAGACATGGTGGGATCGAGAT 59.309 52.381 0.00 0.00 0.00 2.75
360 361 1.967066 AGACATGGTGGGATCGAGATC 59.033 52.381 4.58 4.58 37.11 2.75
361 362 1.967066 GACATGGTGGGATCGAGATCT 59.033 52.381 12.22 0.00 37.92 2.75
362 363 1.690893 ACATGGTGGGATCGAGATCTG 59.309 52.381 0.00 5.00 37.92 2.90
363 364 1.001746 CATGGTGGGATCGAGATCTGG 59.998 57.143 0.00 0.00 37.92 3.86
364 365 0.032117 TGGTGGGATCGAGATCTGGT 60.032 55.000 0.00 0.00 37.92 4.00
365 366 0.390860 GGTGGGATCGAGATCTGGTG 59.609 60.000 0.00 0.00 37.92 4.17
366 367 1.403814 GTGGGATCGAGATCTGGTGA 58.596 55.000 0.00 0.00 37.92 4.02
367 368 1.339610 GTGGGATCGAGATCTGGTGAG 59.660 57.143 0.00 0.00 37.92 3.51
368 369 0.965439 GGGATCGAGATCTGGTGAGG 59.035 60.000 0.00 0.00 37.92 3.86
369 370 0.965439 GGATCGAGATCTGGTGAGGG 59.035 60.000 0.00 0.00 37.92 4.30
370 371 0.965439 GATCGAGATCTGGTGAGGGG 59.035 60.000 0.00 0.00 35.04 4.79
371 372 0.558220 ATCGAGATCTGGTGAGGGGA 59.442 55.000 0.00 0.00 0.00 4.81
372 373 0.106469 TCGAGATCTGGTGAGGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
373 374 1.743321 CGAGATCTGGTGAGGGGAGC 61.743 65.000 0.00 0.00 0.00 4.70
374 375 1.743321 GAGATCTGGTGAGGGGAGCG 61.743 65.000 0.00 0.00 0.00 5.03
375 376 3.453070 GATCTGGTGAGGGGAGCGC 62.453 68.421 0.00 0.00 0.00 5.92
377 378 4.463879 CTGGTGAGGGGAGCGCAG 62.464 72.222 11.47 0.00 0.00 5.18
380 381 4.154347 GTGAGGGGAGCGCAGGAG 62.154 72.222 11.47 0.00 0.00 3.69
383 384 4.722535 AGGGGAGCGCAGGAGGAA 62.723 66.667 11.47 0.00 0.00 3.36
384 385 4.168291 GGGGAGCGCAGGAGGAAG 62.168 72.222 11.47 0.00 0.00 3.46
385 386 3.077556 GGGAGCGCAGGAGGAAGA 61.078 66.667 11.47 0.00 0.00 2.87
386 387 2.185608 GGAGCGCAGGAGGAAGAC 59.814 66.667 11.47 0.00 0.00 3.01
387 388 2.202676 GAGCGCAGGAGGAAGACG 60.203 66.667 11.47 0.00 0.00 4.18
390 391 4.069232 CGCAGGAGGAAGACGCCA 62.069 66.667 0.00 0.00 42.23 5.69
391 392 2.347490 GCAGGAGGAAGACGCCAA 59.653 61.111 0.00 0.00 42.23 4.52
392 393 1.078143 GCAGGAGGAAGACGCCAAT 60.078 57.895 0.00 0.00 42.23 3.16
393 394 1.372087 GCAGGAGGAAGACGCCAATG 61.372 60.000 0.00 0.00 42.23 2.82
394 395 0.250234 CAGGAGGAAGACGCCAATGA 59.750 55.000 0.00 0.00 42.23 2.57
395 396 1.134280 CAGGAGGAAGACGCCAATGAT 60.134 52.381 0.00 0.00 42.23 2.45
396 397 1.561542 AGGAGGAAGACGCCAATGATT 59.438 47.619 0.00 0.00 42.23 2.57
397 398 2.025887 AGGAGGAAGACGCCAATGATTT 60.026 45.455 0.00 0.00 42.23 2.17
398 399 2.356069 GGAGGAAGACGCCAATGATTTC 59.644 50.000 0.00 0.00 39.13 2.17
399 400 2.356069 GAGGAAGACGCCAATGATTTCC 59.644 50.000 0.00 0.00 35.46 3.13
400 401 2.025887 AGGAAGACGCCAATGATTTCCT 60.026 45.455 0.00 0.00 39.54 3.36
401 402 2.755103 GGAAGACGCCAATGATTTCCTT 59.245 45.455 0.00 0.00 33.12 3.36
402 403 3.181496 GGAAGACGCCAATGATTTCCTTC 60.181 47.826 0.00 0.00 33.12 3.46
403 404 2.009774 AGACGCCAATGATTTCCTTCG 58.990 47.619 0.00 0.00 0.00 3.79
404 405 1.737793 GACGCCAATGATTTCCTTCGT 59.262 47.619 0.00 0.00 0.00 3.85
405 406 2.159382 ACGCCAATGATTTCCTTCGTT 58.841 42.857 0.00 0.00 0.00 3.85
406 407 2.556622 ACGCCAATGATTTCCTTCGTTT 59.443 40.909 0.00 0.00 0.00 3.60
407 408 3.005367 ACGCCAATGATTTCCTTCGTTTT 59.995 39.130 0.00 0.00 0.00 2.43
408 409 3.608073 CGCCAATGATTTCCTTCGTTTTC 59.392 43.478 0.00 0.00 0.00 2.29
409 410 4.615912 CGCCAATGATTTCCTTCGTTTTCT 60.616 41.667 0.00 0.00 0.00 2.52
410 411 5.230182 GCCAATGATTTCCTTCGTTTTCTT 58.770 37.500 0.00 0.00 0.00 2.52
411 412 5.119125 GCCAATGATTTCCTTCGTTTTCTTG 59.881 40.000 0.00 0.00 0.00 3.02
412 413 6.446318 CCAATGATTTCCTTCGTTTTCTTGA 58.554 36.000 0.00 0.00 0.00 3.02
413 414 6.363357 CCAATGATTTCCTTCGTTTTCTTGAC 59.637 38.462 0.00 0.00 0.00 3.18
414 415 5.432885 TGATTTCCTTCGTTTTCTTGACC 57.567 39.130 0.00 0.00 0.00 4.02
415 416 5.130350 TGATTTCCTTCGTTTTCTTGACCT 58.870 37.500 0.00 0.00 0.00 3.85
416 417 5.238650 TGATTTCCTTCGTTTTCTTGACCTC 59.761 40.000 0.00 0.00 0.00 3.85
417 418 3.830744 TCCTTCGTTTTCTTGACCTCA 57.169 42.857 0.00 0.00 0.00 3.86
418 419 4.145365 TCCTTCGTTTTCTTGACCTCAA 57.855 40.909 0.00 0.00 0.00 3.02
419 420 4.519213 TCCTTCGTTTTCTTGACCTCAAA 58.481 39.130 0.00 0.00 35.15 2.69
420 421 4.944930 TCCTTCGTTTTCTTGACCTCAAAA 59.055 37.500 0.00 0.00 35.15 2.44
421 422 5.416326 TCCTTCGTTTTCTTGACCTCAAAAA 59.584 36.000 0.00 0.00 35.15 1.94
440 441 5.756195 AAAAAGGAGGATTTTTGCAAAGC 57.244 34.783 12.41 6.14 40.07 3.51
441 442 2.730550 AGGAGGATTTTTGCAAAGCG 57.269 45.000 12.41 0.00 0.00 4.68
442 443 1.273327 AGGAGGATTTTTGCAAAGCGG 59.727 47.619 12.41 0.00 0.00 5.52
443 444 1.272212 GGAGGATTTTTGCAAAGCGGA 59.728 47.619 12.41 0.81 0.00 5.54
444 445 2.288763 GGAGGATTTTTGCAAAGCGGAA 60.289 45.455 12.41 4.19 0.00 4.30
445 446 2.731451 GAGGATTTTTGCAAAGCGGAAC 59.269 45.455 12.41 2.67 0.00 3.62
446 447 2.365293 AGGATTTTTGCAAAGCGGAACT 59.635 40.909 12.41 4.88 0.00 3.01
447 448 3.572255 AGGATTTTTGCAAAGCGGAACTA 59.428 39.130 12.41 0.00 0.00 2.24
448 449 3.673338 GGATTTTTGCAAAGCGGAACTAC 59.327 43.478 12.41 0.45 0.00 2.73
449 450 2.392933 TTTTGCAAAGCGGAACTACG 57.607 45.000 12.41 0.00 0.00 3.51
450 451 1.584175 TTTGCAAAGCGGAACTACGA 58.416 45.000 8.05 0.00 35.47 3.43
451 452 1.144969 TTGCAAAGCGGAACTACGAG 58.855 50.000 0.00 0.00 35.47 4.18
452 453 0.315886 TGCAAAGCGGAACTACGAGA 59.684 50.000 0.00 0.00 35.47 4.04
453 454 1.269883 TGCAAAGCGGAACTACGAGAA 60.270 47.619 0.00 0.00 35.47 2.87
454 455 1.390463 GCAAAGCGGAACTACGAGAAG 59.610 52.381 0.00 0.00 35.47 2.85
455 456 2.673833 CAAAGCGGAACTACGAGAAGT 58.326 47.619 0.00 0.00 35.47 3.01
456 457 2.349297 AAGCGGAACTACGAGAAGTG 57.651 50.000 0.00 0.00 35.47 3.16
457 458 0.109226 AGCGGAACTACGAGAAGTGC 60.109 55.000 0.00 0.00 35.47 4.40
458 459 0.388134 GCGGAACTACGAGAAGTGCA 60.388 55.000 0.00 0.00 35.47 4.57
459 460 1.736032 GCGGAACTACGAGAAGTGCAT 60.736 52.381 0.00 0.00 35.47 3.96
460 461 2.186076 CGGAACTACGAGAAGTGCATC 58.814 52.381 0.00 0.00 35.47 3.91
461 462 2.186076 GGAACTACGAGAAGTGCATCG 58.814 52.381 5.91 5.91 44.36 3.84
462 463 1.584308 GAACTACGAGAAGTGCATCGC 59.416 52.381 7.32 0.00 42.61 4.58
463 464 0.811915 ACTACGAGAAGTGCATCGCT 59.188 50.000 7.32 0.00 42.61 4.93
464 465 1.195347 CTACGAGAAGTGCATCGCTG 58.805 55.000 7.32 0.00 42.61 5.18
481 482 3.558411 GCACCGAGCGACAGATGC 61.558 66.667 0.00 0.00 0.00 3.91
482 483 2.125952 CACCGAGCGACAGATGCA 60.126 61.111 0.00 0.00 33.85 3.96
483 484 2.125912 ACCGAGCGACAGATGCAC 60.126 61.111 0.00 0.00 33.85 4.57
484 485 2.887568 CCGAGCGACAGATGCACC 60.888 66.667 0.00 0.00 33.85 5.01
485 486 2.887568 CGAGCGACAGATGCACCC 60.888 66.667 0.00 0.00 33.85 4.61
486 487 2.265739 GAGCGACAGATGCACCCA 59.734 61.111 0.00 0.00 33.85 4.51
487 488 1.812922 GAGCGACAGATGCACCCAG 60.813 63.158 0.00 0.00 33.85 4.45
488 489 3.503363 GCGACAGATGCACCCAGC 61.503 66.667 0.00 0.00 45.96 4.85
497 498 3.264897 GCACCCAGCGCATCTACG 61.265 66.667 11.47 0.00 0.00 3.51
498 499 2.586079 CACCCAGCGCATCTACGG 60.586 66.667 11.47 1.15 0.00 4.02
499 500 3.075005 ACCCAGCGCATCTACGGT 61.075 61.111 11.47 1.87 46.12 4.83
506 507 2.202743 GCATCTACGGTGCGCAGA 60.203 61.111 12.22 4.04 33.67 4.26
507 508 2.233654 GCATCTACGGTGCGCAGAG 61.234 63.158 12.22 10.91 32.63 3.35
539 540 2.125350 GCGAGCTGGCTTGCTACT 60.125 61.111 23.07 0.00 46.92 2.57
540 541 1.743252 GCGAGCTGGCTTGCTACTT 60.743 57.895 23.07 0.00 46.92 2.24
541 542 1.975363 GCGAGCTGGCTTGCTACTTG 61.975 60.000 23.07 0.00 46.92 3.16
542 543 1.364626 CGAGCTGGCTTGCTACTTGG 61.365 60.000 0.00 0.00 44.17 3.61
543 544 1.652167 GAGCTGGCTTGCTACTTGGC 61.652 60.000 0.00 0.00 44.17 4.52
544 545 3.044059 GCTGGCTTGCTACTTGGCG 62.044 63.158 0.00 0.00 34.52 5.69
545 546 1.672356 CTGGCTTGCTACTTGGCGT 60.672 57.895 0.00 0.00 34.52 5.68
546 547 0.391130 CTGGCTTGCTACTTGGCGTA 60.391 55.000 0.00 0.00 34.52 4.42
547 548 0.251916 TGGCTTGCTACTTGGCGTAT 59.748 50.000 0.00 0.00 34.52 3.06
548 549 0.938008 GGCTTGCTACTTGGCGTATC 59.062 55.000 0.00 0.00 34.52 2.24
549 550 1.473434 GGCTTGCTACTTGGCGTATCT 60.473 52.381 0.00 0.00 34.52 1.98
550 551 2.280628 GCTTGCTACTTGGCGTATCTT 58.719 47.619 0.00 0.00 34.52 2.40
551 552 2.285488 GCTTGCTACTTGGCGTATCTTC 59.715 50.000 0.00 0.00 34.52 2.87
552 553 3.786635 CTTGCTACTTGGCGTATCTTCT 58.213 45.455 0.00 0.00 34.52 2.85
553 554 4.736759 GCTTGCTACTTGGCGTATCTTCTA 60.737 45.833 0.00 0.00 34.52 2.10
554 555 4.303086 TGCTACTTGGCGTATCTTCTAC 57.697 45.455 0.00 0.00 34.52 2.59
555 556 3.952323 TGCTACTTGGCGTATCTTCTACT 59.048 43.478 0.00 0.00 34.52 2.57
556 557 5.128205 TGCTACTTGGCGTATCTTCTACTA 58.872 41.667 0.00 0.00 34.52 1.82
557 558 5.238868 TGCTACTTGGCGTATCTTCTACTAG 59.761 44.000 0.00 0.00 34.52 2.57
558 559 4.571372 ACTTGGCGTATCTTCTACTAGC 57.429 45.455 0.00 0.00 0.00 3.42
573 574 4.772624 TCTACTAGCAAAAGCAAGAGAGGA 59.227 41.667 0.00 0.00 0.00 3.71
584 585 1.618837 CAAGAGAGGACGGAGAACCAA 59.381 52.381 0.00 0.00 35.59 3.67
593 594 2.939103 GACGGAGAACCAAATCATCCTG 59.061 50.000 0.00 0.00 35.59 3.86
595 596 3.244911 ACGGAGAACCAAATCATCCTGTT 60.245 43.478 0.00 0.00 35.59 3.16
605 606 6.268387 ACCAAATCATCCTGTTCATCAAAACT 59.732 34.615 0.00 0.00 0.00 2.66
618 619 6.578163 TCATCAAAACTTGCAATCTGATGA 57.422 33.333 24.41 24.41 44.10 2.92
623 624 8.515695 TCAAAACTTGCAATCTGATGATCTAT 57.484 30.769 0.00 0.00 31.51 1.98
653 654 4.961551 CCAGCATACTAAACGCGTTTTATG 59.038 41.667 38.53 34.89 34.23 1.90
654 655 4.433304 CAGCATACTAAACGCGTTTTATGC 59.567 41.667 41.15 41.15 43.09 3.14
667 668 5.506649 CGCGTTTTATGCCTTAATTACCCAT 60.507 40.000 0.00 0.00 0.00 4.00
670 671 7.657336 CGTTTTATGCCTTAATTACCCATCAT 58.343 34.615 0.00 0.00 0.00 2.45
693 694 7.930865 TCATTGCCATTGCCTTAATTAATTACC 59.069 33.333 7.43 1.04 36.33 2.85
695 696 5.221342 TGCCATTGCCTTAATTAATTACCCG 60.221 40.000 7.43 0.17 36.33 5.28
696 697 5.221362 GCCATTGCCTTAATTAATTACCCGT 60.221 40.000 7.43 0.00 0.00 5.28
697 698 6.212955 CCATTGCCTTAATTAATTACCCGTG 58.787 40.000 7.43 3.37 0.00 4.94
698 699 5.838531 TTGCCTTAATTAATTACCCGTGG 57.161 39.130 7.43 6.69 0.00 4.94
706 707 0.329931 AATTACCCGTGGTGCCATCA 59.670 50.000 5.90 0.00 36.19 3.07
719 747 0.468226 GCCATCAGGGTAACATCGGA 59.532 55.000 0.00 0.00 39.65 4.55
736 764 0.680061 GGACTAATCCTACCCGCTGG 59.320 60.000 0.00 0.00 42.45 4.85
894 956 1.532238 GCCCTAAATCCTCGCCCTT 59.468 57.895 0.00 0.00 0.00 3.95
928 990 3.710722 CAGCTTGGCCTCCTCCGT 61.711 66.667 3.32 0.00 0.00 4.69
930 992 3.706373 GCTTGGCCTCCTCCGTCA 61.706 66.667 3.32 0.00 0.00 4.35
1006 1068 1.335132 GGGGAGTAACGAGATGGCCA 61.335 60.000 8.56 8.56 0.00 5.36
1623 1737 2.284625 ACTCCCCACGATGCCTGA 60.285 61.111 0.00 0.00 0.00 3.86
1661 1775 1.550130 CCTAGGCCGTCTTGGAACCA 61.550 60.000 0.00 0.00 40.19 3.67
1740 1854 9.674068 TCTCTGTATGTCCTTAGCAGTATATAG 57.326 37.037 0.00 0.00 0.00 1.31
1741 1855 8.282455 TCTGTATGTCCTTAGCAGTATATAGC 57.718 38.462 0.00 0.00 0.00 2.97
1742 1856 7.888546 TCTGTATGTCCTTAGCAGTATATAGCA 59.111 37.037 2.77 0.00 0.00 3.49
1743 1857 8.056407 TGTATGTCCTTAGCAGTATATAGCAG 57.944 38.462 2.77 0.00 0.00 4.24
1744 1858 7.670140 TGTATGTCCTTAGCAGTATATAGCAGT 59.330 37.037 2.77 0.00 0.00 4.40
1745 1859 9.175312 GTATGTCCTTAGCAGTATATAGCAGTA 57.825 37.037 2.77 0.00 0.00 2.74
1746 1860 8.830915 ATGTCCTTAGCAGTATATAGCAGTAT 57.169 34.615 2.77 0.00 0.00 2.12
1747 1861 9.922477 ATGTCCTTAGCAGTATATAGCAGTATA 57.078 33.333 2.77 0.00 0.00 1.47
1748 1862 9.922477 TGTCCTTAGCAGTATATAGCAGTATAT 57.078 33.333 2.77 0.00 36.12 0.86
2043 2282 5.873179 ATGAATTTCATTTTGCTTGCTGG 57.127 34.783 6.06 0.00 32.13 4.85
2521 2761 2.042831 GCTGATGGGTGGCACTGAC 61.043 63.158 18.45 8.93 0.00 3.51
2679 2919 7.465353 TGCATGATTGTTTTATCCTCTGAAA 57.535 32.000 0.00 0.00 0.00 2.69
2697 2937 9.780413 CCTCTGAAAGACAATATAAAAGCTTTC 57.220 33.333 13.10 0.00 38.67 2.62
2824 3065 9.545105 CTACTCTTCTGCATCTGAAATATTTCT 57.455 33.333 24.77 6.23 38.02 2.52
2937 3178 8.576442 AGTGGTAATTATTTATTGGCATAGTGC 58.424 33.333 0.00 0.00 44.08 4.40
3120 3363 6.314896 AGAAAGCAGATCCTATTTGTTTCTCG 59.685 38.462 0.00 0.00 29.14 4.04
3225 3475 7.254898 GCACCGTGTAGTACTAACATATGACTA 60.255 40.741 10.38 3.44 0.00 2.59
3408 3658 0.520404 CTTCAGCAGCATGTGGTCAC 59.480 55.000 0.00 0.00 39.31 3.67
3580 3834 0.762418 TTCATCACCGACCACCAAGT 59.238 50.000 0.00 0.00 0.00 3.16
3688 3946 6.925610 TTTTGATATGCTAATCACGCTTCT 57.074 33.333 1.60 0.00 35.63 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.716864 GCTCTCGACCGCCTCTAC 59.283 66.667 0.00 0.00 0.00 2.59
3 4 4.779966 TCGCTCTCGACCGCCTCT 62.780 66.667 0.00 0.00 40.21 3.69
4 5 4.244802 CTCGCTCTCGACCGCCTC 62.245 72.222 0.00 0.00 40.21 4.70
23 24 4.468689 CTTCTTCCCCGACCGCCC 62.469 72.222 0.00 0.00 0.00 6.13
24 25 3.372554 CTCTTCTTCCCCGACCGCC 62.373 68.421 0.00 0.00 0.00 6.13
25 26 2.184579 CTCTTCTTCCCCGACCGC 59.815 66.667 0.00 0.00 0.00 5.68
26 27 2.184579 GCTCTTCTTCCCCGACCG 59.815 66.667 0.00 0.00 0.00 4.79
27 28 2.184579 CGCTCTTCTTCCCCGACC 59.815 66.667 0.00 0.00 0.00 4.79
28 29 2.184579 CCGCTCTTCTTCCCCGAC 59.815 66.667 0.00 0.00 0.00 4.79
29 30 3.075005 CCCGCTCTTCTTCCCCGA 61.075 66.667 0.00 0.00 0.00 5.14
30 31 3.075005 TCCCGCTCTTCTTCCCCG 61.075 66.667 0.00 0.00 0.00 5.73
31 32 2.736826 CCTCCCGCTCTTCTTCCCC 61.737 68.421 0.00 0.00 0.00 4.81
32 33 1.681486 CTCCTCCCGCTCTTCTTCCC 61.681 65.000 0.00 0.00 0.00 3.97
33 34 0.684805 TCTCCTCCCGCTCTTCTTCC 60.685 60.000 0.00 0.00 0.00 3.46
34 35 0.744281 CTCTCCTCCCGCTCTTCTTC 59.256 60.000 0.00 0.00 0.00 2.87
35 36 1.326951 GCTCTCCTCCCGCTCTTCTT 61.327 60.000 0.00 0.00 0.00 2.52
36 37 1.756561 GCTCTCCTCCCGCTCTTCT 60.757 63.158 0.00 0.00 0.00 2.85
37 38 2.811799 GCTCTCCTCCCGCTCTTC 59.188 66.667 0.00 0.00 0.00 2.87
38 39 3.144193 CGCTCTCCTCCCGCTCTT 61.144 66.667 0.00 0.00 0.00 2.85
39 40 4.434354 ACGCTCTCCTCCCGCTCT 62.434 66.667 0.00 0.00 0.00 4.09
40 41 4.200283 CACGCTCTCCTCCCGCTC 62.200 72.222 0.00 0.00 0.00 5.03
43 44 4.504916 CTGCACGCTCTCCTCCCG 62.505 72.222 0.00 0.00 0.00 5.14
44 45 4.154347 CCTGCACGCTCTCCTCCC 62.154 72.222 0.00 0.00 0.00 4.30
45 46 3.071206 TCCTGCACGCTCTCCTCC 61.071 66.667 0.00 0.00 0.00 4.30
46 47 2.493973 CTCCTGCACGCTCTCCTC 59.506 66.667 0.00 0.00 0.00 3.71
47 48 3.073735 CCTCCTGCACGCTCTCCT 61.074 66.667 0.00 0.00 0.00 3.69
48 49 4.828925 GCCTCCTGCACGCTCTCC 62.829 72.222 0.00 0.00 40.77 3.71
51 52 4.742201 TTCGCCTCCTGCACGCTC 62.742 66.667 0.00 0.00 41.33 5.03
52 53 4.749310 CTTCGCCTCCTGCACGCT 62.749 66.667 0.00 0.00 41.33 5.07
53 54 4.742201 TCTTCGCCTCCTGCACGC 62.742 66.667 0.00 0.00 41.33 5.34
54 55 2.048222 TTCTTCGCCTCCTGCACG 60.048 61.111 0.00 0.00 41.33 5.34
55 56 0.320771 TTCTTCTTCGCCTCCTGCAC 60.321 55.000 0.00 0.00 41.33 4.57
56 57 0.396435 TTTCTTCTTCGCCTCCTGCA 59.604 50.000 0.00 0.00 41.33 4.41
57 58 1.082690 CTTTCTTCTTCGCCTCCTGC 58.917 55.000 0.00 0.00 0.00 4.85
58 59 1.677217 CCCTTTCTTCTTCGCCTCCTG 60.677 57.143 0.00 0.00 0.00 3.86
59 60 0.615850 CCCTTTCTTCTTCGCCTCCT 59.384 55.000 0.00 0.00 0.00 3.69
60 61 0.393132 CCCCTTTCTTCTTCGCCTCC 60.393 60.000 0.00 0.00 0.00 4.30
61 62 0.393132 CCCCCTTTCTTCTTCGCCTC 60.393 60.000 0.00 0.00 0.00 4.70
62 63 1.685820 CCCCCTTTCTTCTTCGCCT 59.314 57.895 0.00 0.00 0.00 5.52
63 64 4.320910 CCCCCTTTCTTCTTCGCC 57.679 61.111 0.00 0.00 0.00 5.54
93 94 2.186903 CACTTCACCCCGATCCCG 59.813 66.667 0.00 0.00 0.00 5.14
94 95 1.522569 CTCACTTCACCCCGATCCC 59.477 63.158 0.00 0.00 0.00 3.85
95 96 1.522569 CCTCACTTCACCCCGATCC 59.477 63.158 0.00 0.00 0.00 3.36
96 97 1.153349 GCCTCACTTCACCCCGATC 60.153 63.158 0.00 0.00 0.00 3.69
97 98 2.670148 GGCCTCACTTCACCCCGAT 61.670 63.158 0.00 0.00 0.00 4.18
98 99 3.319198 GGCCTCACTTCACCCCGA 61.319 66.667 0.00 0.00 0.00 5.14
99 100 3.612247 CTGGCCTCACTTCACCCCG 62.612 68.421 3.32 0.00 0.00 5.73
100 101 1.198759 TACTGGCCTCACTTCACCCC 61.199 60.000 3.32 0.00 0.00 4.95
101 102 0.250513 CTACTGGCCTCACTTCACCC 59.749 60.000 3.32 0.00 0.00 4.61
102 103 0.250513 CCTACTGGCCTCACTTCACC 59.749 60.000 3.32 0.00 0.00 4.02
103 104 0.250513 CCCTACTGGCCTCACTTCAC 59.749 60.000 3.32 0.00 0.00 3.18
104 105 2.683916 CCCTACTGGCCTCACTTCA 58.316 57.895 3.32 0.00 0.00 3.02
143 144 4.521062 CTCCCTCGCCAAGCTCCG 62.521 72.222 0.00 0.00 0.00 4.63
144 145 3.077556 TCTCCCTCGCCAAGCTCC 61.078 66.667 0.00 0.00 0.00 4.70
145 146 2.498726 CTCTCCCTCGCCAAGCTC 59.501 66.667 0.00 0.00 0.00 4.09
146 147 3.780173 GCTCTCCCTCGCCAAGCT 61.780 66.667 0.00 0.00 0.00 3.74
154 155 3.591835 CTCTCGGCGCTCTCCCTC 61.592 72.222 7.64 0.00 0.00 4.30
164 165 0.662970 CTCTTATCTGCGCTCTCGGC 60.663 60.000 9.73 0.00 35.95 5.54
165 166 0.039617 CCTCTTATCTGCGCTCTCGG 60.040 60.000 9.73 0.00 35.95 4.63
166 167 0.947960 TCCTCTTATCTGCGCTCTCG 59.052 55.000 9.73 0.00 39.07 4.04
167 168 1.269448 CCTCCTCTTATCTGCGCTCTC 59.731 57.143 9.73 0.00 0.00 3.20
168 169 1.327303 CCTCCTCTTATCTGCGCTCT 58.673 55.000 9.73 0.00 0.00 4.09
169 170 0.319469 GCCTCCTCTTATCTGCGCTC 60.319 60.000 9.73 0.00 0.00 5.03
170 171 1.745264 GCCTCCTCTTATCTGCGCT 59.255 57.895 9.73 0.00 0.00 5.92
171 172 1.301322 GGCCTCCTCTTATCTGCGC 60.301 63.158 0.00 0.00 0.00 6.09
172 173 1.006805 CGGCCTCCTCTTATCTGCG 60.007 63.158 0.00 0.00 0.00 5.18
173 174 0.249657 CACGGCCTCCTCTTATCTGC 60.250 60.000 0.00 0.00 0.00 4.26
174 175 0.390860 CCACGGCCTCCTCTTATCTG 59.609 60.000 0.00 0.00 0.00 2.90
175 176 0.032017 ACCACGGCCTCCTCTTATCT 60.032 55.000 0.00 0.00 0.00 1.98
176 177 0.105039 CACCACGGCCTCCTCTTATC 59.895 60.000 0.00 0.00 0.00 1.75
177 178 1.972660 GCACCACGGCCTCCTCTTAT 61.973 60.000 0.00 0.00 0.00 1.73
178 179 2.656069 GCACCACGGCCTCCTCTTA 61.656 63.158 0.00 0.00 0.00 2.10
179 180 4.021925 GCACCACGGCCTCCTCTT 62.022 66.667 0.00 0.00 0.00 2.85
197 198 4.489771 CTCCCACGCCCATCACCC 62.490 72.222 0.00 0.00 0.00 4.61
198 199 4.489771 CCTCCCACGCCCATCACC 62.490 72.222 0.00 0.00 0.00 4.02
199 200 4.489771 CCCTCCCACGCCCATCAC 62.490 72.222 0.00 0.00 0.00 3.06
208 209 3.775654 CTCGCTCACCCCTCCCAC 61.776 72.222 0.00 0.00 0.00 4.61
211 212 3.003763 AACCTCGCTCACCCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
212 213 2.579738 GAACCTCGCTCACCCCTC 59.420 66.667 0.00 0.00 0.00 4.30
213 214 3.382832 CGAACCTCGCTCACCCCT 61.383 66.667 0.00 0.00 31.14 4.79
235 236 3.730761 GGACAGTGGCAAGCGCTG 61.731 66.667 12.58 6.58 38.60 5.18
236 237 4.254709 TGGACAGTGGCAAGCGCT 62.255 61.111 2.64 2.64 38.60 5.92
237 238 4.030452 GTGGACAGTGGCAAGCGC 62.030 66.667 0.00 0.00 37.44 5.92
238 239 3.716006 CGTGGACAGTGGCAAGCG 61.716 66.667 0.00 0.00 0.00 4.68
239 240 4.030452 GCGTGGACAGTGGCAAGC 62.030 66.667 0.00 0.00 0.00 4.01
240 241 3.716006 CGCGTGGACAGTGGCAAG 61.716 66.667 0.00 0.00 0.00 4.01
241 242 4.539083 ACGCGTGGACAGTGGCAA 62.539 61.111 12.93 0.00 0.00 4.52
252 253 1.667177 CCTATGATCTAGCCACGCGTG 60.667 57.143 31.77 31.77 0.00 5.34
253 254 0.598562 CCTATGATCTAGCCACGCGT 59.401 55.000 5.58 5.58 0.00 6.01
254 255 0.109086 CCCTATGATCTAGCCACGCG 60.109 60.000 3.53 3.53 0.00 6.01
255 256 0.247736 CCCCTATGATCTAGCCACGC 59.752 60.000 0.00 0.00 0.00 5.34
256 257 1.924731 TCCCCTATGATCTAGCCACG 58.075 55.000 0.00 0.00 0.00 4.94
257 258 2.503356 CCATCCCCTATGATCTAGCCAC 59.497 54.545 0.00 0.00 37.86 5.01
258 259 2.386811 TCCATCCCCTATGATCTAGCCA 59.613 50.000 0.00 0.00 37.86 4.75
259 260 3.037549 CTCCATCCCCTATGATCTAGCC 58.962 54.545 0.00 0.00 37.86 3.93
260 261 3.960102 CTCTCCATCCCCTATGATCTAGC 59.040 52.174 0.00 0.00 37.86 3.42
261 262 4.016666 ACCTCTCCATCCCCTATGATCTAG 60.017 50.000 0.00 0.00 37.86 2.43
262 263 3.932562 ACCTCTCCATCCCCTATGATCTA 59.067 47.826 0.00 0.00 37.86 1.98
263 264 2.732507 ACCTCTCCATCCCCTATGATCT 59.267 50.000 0.00 0.00 37.86 2.75
264 265 3.103742 GACCTCTCCATCCCCTATGATC 58.896 54.545 0.00 0.00 37.86 2.92
265 266 2.558575 CGACCTCTCCATCCCCTATGAT 60.559 54.545 0.00 0.00 37.86 2.45
266 267 1.203063 CGACCTCTCCATCCCCTATGA 60.203 57.143 0.00 0.00 37.86 2.15
267 268 1.261480 CGACCTCTCCATCCCCTATG 58.739 60.000 0.00 0.00 35.15 2.23
268 269 0.115349 CCGACCTCTCCATCCCCTAT 59.885 60.000 0.00 0.00 0.00 2.57
269 270 1.542175 CCGACCTCTCCATCCCCTA 59.458 63.158 0.00 0.00 0.00 3.53
270 271 2.283809 CCGACCTCTCCATCCCCT 59.716 66.667 0.00 0.00 0.00 4.79
271 272 2.844839 CCCGACCTCTCCATCCCC 60.845 72.222 0.00 0.00 0.00 4.81
272 273 3.551407 GCCCGACCTCTCCATCCC 61.551 72.222 0.00 0.00 0.00 3.85
273 274 2.764128 TGCCCGACCTCTCCATCC 60.764 66.667 0.00 0.00 0.00 3.51
274 275 1.743321 CTCTGCCCGACCTCTCCATC 61.743 65.000 0.00 0.00 0.00 3.51
275 276 1.760086 CTCTGCCCGACCTCTCCAT 60.760 63.158 0.00 0.00 0.00 3.41
276 277 2.363018 CTCTGCCCGACCTCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
277 278 3.151022 CCTCTGCCCGACCTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
278 279 3.151022 CCCTCTGCCCGACCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
279 280 4.787280 CCCCTCTGCCCGACCTCT 62.787 72.222 0.00 0.00 0.00 3.69
318 319 3.787001 CTTCCGCCCTGGGGTCTC 61.787 72.222 16.03 0.00 38.76 3.36
319 320 4.658786 ACTTCCGCCCTGGGGTCT 62.659 66.667 16.03 0.00 38.76 3.85
320 321 4.410400 CACTTCCGCCCTGGGGTC 62.410 72.222 16.03 0.00 38.76 4.46
325 326 4.020617 TCTGCCACTTCCGCCCTG 62.021 66.667 0.00 0.00 0.00 4.45
326 327 4.021925 GTCTGCCACTTCCGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
327 328 3.628646 ATGTCTGCCACTTCCGCCC 62.629 63.158 0.00 0.00 0.00 6.13
328 329 2.045926 ATGTCTGCCACTTCCGCC 60.046 61.111 0.00 0.00 0.00 6.13
329 330 2.401766 CCATGTCTGCCACTTCCGC 61.402 63.158 0.00 0.00 0.00 5.54
330 331 1.003355 ACCATGTCTGCCACTTCCG 60.003 57.895 0.00 0.00 0.00 4.30
331 332 0.962356 CCACCATGTCTGCCACTTCC 60.962 60.000 0.00 0.00 0.00 3.46
332 333 0.962356 CCCACCATGTCTGCCACTTC 60.962 60.000 0.00 0.00 0.00 3.01
333 334 1.075482 CCCACCATGTCTGCCACTT 59.925 57.895 0.00 0.00 0.00 3.16
334 335 1.210204 ATCCCACCATGTCTGCCACT 61.210 55.000 0.00 0.00 0.00 4.00
335 336 0.749454 GATCCCACCATGTCTGCCAC 60.749 60.000 0.00 0.00 0.00 5.01
336 337 1.609239 GATCCCACCATGTCTGCCA 59.391 57.895 0.00 0.00 0.00 4.92
337 338 1.524621 CGATCCCACCATGTCTGCC 60.525 63.158 0.00 0.00 0.00 4.85
338 339 0.531532 CTCGATCCCACCATGTCTGC 60.532 60.000 0.00 0.00 0.00 4.26
339 340 1.114627 TCTCGATCCCACCATGTCTG 58.885 55.000 0.00 0.00 0.00 3.51
340 341 1.967066 GATCTCGATCCCACCATGTCT 59.033 52.381 0.00 0.00 31.76 3.41
341 342 1.967066 AGATCTCGATCCCACCATGTC 59.033 52.381 3.39 0.00 38.58 3.06
342 343 1.690893 CAGATCTCGATCCCACCATGT 59.309 52.381 0.00 0.00 38.58 3.21
343 344 1.001746 CCAGATCTCGATCCCACCATG 59.998 57.143 0.00 0.00 38.58 3.66
344 345 1.346062 CCAGATCTCGATCCCACCAT 58.654 55.000 0.00 0.00 38.58 3.55
345 346 0.032117 ACCAGATCTCGATCCCACCA 60.032 55.000 0.00 0.00 38.58 4.17
346 347 0.390860 CACCAGATCTCGATCCCACC 59.609 60.000 0.00 0.00 38.58 4.61
347 348 1.339610 CTCACCAGATCTCGATCCCAC 59.660 57.143 0.00 0.00 38.58 4.61
348 349 1.697284 CTCACCAGATCTCGATCCCA 58.303 55.000 0.00 0.00 38.58 4.37
349 350 0.965439 CCTCACCAGATCTCGATCCC 59.035 60.000 0.00 0.00 38.58 3.85
350 351 0.965439 CCCTCACCAGATCTCGATCC 59.035 60.000 0.00 0.00 38.58 3.36
351 352 0.965439 CCCCTCACCAGATCTCGATC 59.035 60.000 0.00 0.00 38.09 3.69
352 353 0.558220 TCCCCTCACCAGATCTCGAT 59.442 55.000 0.00 0.00 0.00 3.59
353 354 0.106469 CTCCCCTCACCAGATCTCGA 60.106 60.000 0.00 0.00 0.00 4.04
354 355 1.743321 GCTCCCCTCACCAGATCTCG 61.743 65.000 0.00 0.00 0.00 4.04
355 356 1.743321 CGCTCCCCTCACCAGATCTC 61.743 65.000 0.00 0.00 0.00 2.75
356 357 1.760086 CGCTCCCCTCACCAGATCT 60.760 63.158 0.00 0.00 0.00 2.75
357 358 2.818132 CGCTCCCCTCACCAGATC 59.182 66.667 0.00 0.00 0.00 2.75
358 359 3.474570 GCGCTCCCCTCACCAGAT 61.475 66.667 0.00 0.00 0.00 2.90
360 361 4.463879 CTGCGCTCCCCTCACCAG 62.464 72.222 9.73 0.00 0.00 4.00
363 364 4.154347 CTCCTGCGCTCCCCTCAC 62.154 72.222 9.73 0.00 0.00 3.51
366 367 4.722535 TTCCTCCTGCGCTCCCCT 62.723 66.667 9.73 0.00 0.00 4.79
367 368 4.168291 CTTCCTCCTGCGCTCCCC 62.168 72.222 9.73 0.00 0.00 4.81
368 369 3.077556 TCTTCCTCCTGCGCTCCC 61.078 66.667 9.73 0.00 0.00 4.30
369 370 2.185608 GTCTTCCTCCTGCGCTCC 59.814 66.667 9.73 0.00 0.00 4.70
370 371 2.202676 CGTCTTCCTCCTGCGCTC 60.203 66.667 9.73 0.00 0.00 5.03
371 372 4.443266 GCGTCTTCCTCCTGCGCT 62.443 66.667 9.73 0.00 44.00 5.92
373 374 2.859273 ATTGGCGTCTTCCTCCTGCG 62.859 60.000 0.00 0.00 0.00 5.18
374 375 1.078143 ATTGGCGTCTTCCTCCTGC 60.078 57.895 0.00 0.00 0.00 4.85
375 376 0.250234 TCATTGGCGTCTTCCTCCTG 59.750 55.000 0.00 0.00 0.00 3.86
376 377 1.207791 ATCATTGGCGTCTTCCTCCT 58.792 50.000 0.00 0.00 0.00 3.69
377 378 2.044123 AATCATTGGCGTCTTCCTCC 57.956 50.000 0.00 0.00 0.00 4.30
378 379 2.356069 GGAAATCATTGGCGTCTTCCTC 59.644 50.000 0.00 0.00 31.53 3.71
379 380 2.025887 AGGAAATCATTGGCGTCTTCCT 60.026 45.455 0.45 0.45 38.24 3.36
380 381 2.369394 AGGAAATCATTGGCGTCTTCC 58.631 47.619 0.00 0.00 33.90 3.46
381 382 3.485877 CGAAGGAAATCATTGGCGTCTTC 60.486 47.826 0.00 0.00 0.00 2.87
382 383 2.420022 CGAAGGAAATCATTGGCGTCTT 59.580 45.455 0.00 0.00 0.00 3.01
383 384 2.009774 CGAAGGAAATCATTGGCGTCT 58.990 47.619 0.00 0.00 0.00 4.18
384 385 1.737793 ACGAAGGAAATCATTGGCGTC 59.262 47.619 0.00 0.00 0.00 5.19
385 386 1.821216 ACGAAGGAAATCATTGGCGT 58.179 45.000 0.00 0.00 0.00 5.68
386 387 2.919666 AACGAAGGAAATCATTGGCG 57.080 45.000 0.00 0.00 0.00 5.69
387 388 4.809673 AGAAAACGAAGGAAATCATTGGC 58.190 39.130 0.00 0.00 0.00 4.52
388 389 6.363357 GTCAAGAAAACGAAGGAAATCATTGG 59.637 38.462 0.00 0.00 0.00 3.16
389 390 6.363357 GGTCAAGAAAACGAAGGAAATCATTG 59.637 38.462 0.00 0.00 0.00 2.82
390 391 6.265422 AGGTCAAGAAAACGAAGGAAATCATT 59.735 34.615 0.00 0.00 0.00 2.57
391 392 5.770162 AGGTCAAGAAAACGAAGGAAATCAT 59.230 36.000 0.00 0.00 0.00 2.45
392 393 5.130350 AGGTCAAGAAAACGAAGGAAATCA 58.870 37.500 0.00 0.00 0.00 2.57
393 394 5.238650 TGAGGTCAAGAAAACGAAGGAAATC 59.761 40.000 0.00 0.00 0.00 2.17
394 395 5.130350 TGAGGTCAAGAAAACGAAGGAAAT 58.870 37.500 0.00 0.00 0.00 2.17
395 396 4.519213 TGAGGTCAAGAAAACGAAGGAAA 58.481 39.130 0.00 0.00 0.00 3.13
396 397 4.145365 TGAGGTCAAGAAAACGAAGGAA 57.855 40.909 0.00 0.00 0.00 3.36
397 398 3.830744 TGAGGTCAAGAAAACGAAGGA 57.169 42.857 0.00 0.00 0.00 3.36
398 399 4.893424 TTTGAGGTCAAGAAAACGAAGG 57.107 40.909 0.00 0.00 37.15 3.46
418 419 4.273235 CGCTTTGCAAAAATCCTCCTTTTT 59.727 37.500 13.84 0.00 38.51 1.94
419 420 3.809279 CGCTTTGCAAAAATCCTCCTTTT 59.191 39.130 13.84 0.00 0.00 2.27
420 421 3.392882 CGCTTTGCAAAAATCCTCCTTT 58.607 40.909 13.84 0.00 0.00 3.11
421 422 2.289010 CCGCTTTGCAAAAATCCTCCTT 60.289 45.455 13.84 0.00 0.00 3.36
422 423 1.273327 CCGCTTTGCAAAAATCCTCCT 59.727 47.619 13.84 0.00 0.00 3.69
423 424 1.272212 TCCGCTTTGCAAAAATCCTCC 59.728 47.619 13.84 0.00 0.00 4.30
424 425 2.723124 TCCGCTTTGCAAAAATCCTC 57.277 45.000 13.84 0.00 0.00 3.71
425 426 2.365293 AGTTCCGCTTTGCAAAAATCCT 59.635 40.909 13.84 2.04 0.00 3.24
426 427 2.754472 AGTTCCGCTTTGCAAAAATCC 58.246 42.857 13.84 1.45 0.00 3.01
427 428 3.360758 CGTAGTTCCGCTTTGCAAAAATC 59.639 43.478 13.84 4.67 0.00 2.17
428 429 3.003897 TCGTAGTTCCGCTTTGCAAAAAT 59.996 39.130 13.84 0.00 0.00 1.82
429 430 2.355132 TCGTAGTTCCGCTTTGCAAAAA 59.645 40.909 13.84 1.40 0.00 1.94
430 431 1.941294 TCGTAGTTCCGCTTTGCAAAA 59.059 42.857 13.84 0.00 0.00 2.44
431 432 1.529438 CTCGTAGTTCCGCTTTGCAAA 59.471 47.619 12.14 12.14 0.00 3.68
432 433 1.144969 CTCGTAGTTCCGCTTTGCAA 58.855 50.000 0.00 0.00 0.00 4.08
433 434 0.315886 TCTCGTAGTTCCGCTTTGCA 59.684 50.000 0.00 0.00 0.00 4.08
434 435 1.390463 CTTCTCGTAGTTCCGCTTTGC 59.610 52.381 0.00 0.00 0.00 3.68
435 436 2.408704 CACTTCTCGTAGTTCCGCTTTG 59.591 50.000 0.00 0.00 0.00 2.77
436 437 2.673833 CACTTCTCGTAGTTCCGCTTT 58.326 47.619 0.00 0.00 0.00 3.51
437 438 1.669211 GCACTTCTCGTAGTTCCGCTT 60.669 52.381 0.00 0.00 0.00 4.68
438 439 0.109226 GCACTTCTCGTAGTTCCGCT 60.109 55.000 0.00 0.00 0.00 5.52
439 440 0.388134 TGCACTTCTCGTAGTTCCGC 60.388 55.000 0.00 0.00 0.00 5.54
440 441 2.186076 GATGCACTTCTCGTAGTTCCG 58.814 52.381 0.00 0.00 0.00 4.30
441 442 2.186076 CGATGCACTTCTCGTAGTTCC 58.814 52.381 0.00 0.00 0.00 3.62
442 443 1.584308 GCGATGCACTTCTCGTAGTTC 59.416 52.381 9.02 0.00 37.23 3.01
443 444 1.202582 AGCGATGCACTTCTCGTAGTT 59.797 47.619 9.02 0.00 37.23 2.24
444 445 0.811915 AGCGATGCACTTCTCGTAGT 59.188 50.000 9.02 0.00 37.23 2.73
445 446 1.195347 CAGCGATGCACTTCTCGTAG 58.805 55.000 9.02 0.00 37.23 3.51
446 447 0.802222 GCAGCGATGCACTTCTCGTA 60.802 55.000 22.72 0.00 37.23 3.43
447 448 2.097038 GCAGCGATGCACTTCTCGT 61.097 57.895 22.72 0.00 37.23 4.18
448 449 2.096442 TGCAGCGATGCACTTCTCG 61.096 57.895 26.68 3.09 40.23 4.04
449 450 3.880591 TGCAGCGATGCACTTCTC 58.119 55.556 26.68 0.00 40.23 2.87
461 462 3.997064 ATCTGTCGCTCGGTGCAGC 62.997 63.158 5.64 5.64 43.06 5.25
462 463 2.163390 CATCTGTCGCTCGGTGCAG 61.163 63.158 2.75 0.00 43.06 4.41
463 464 2.125952 CATCTGTCGCTCGGTGCA 60.126 61.111 2.75 0.00 43.06 4.57
464 465 3.558411 GCATCTGTCGCTCGGTGC 61.558 66.667 0.00 0.00 38.57 5.01
465 466 2.125952 TGCATCTGTCGCTCGGTG 60.126 61.111 0.00 0.00 0.00 4.94
466 467 2.125912 GTGCATCTGTCGCTCGGT 60.126 61.111 0.00 0.00 0.00 4.69
467 468 2.887568 GGTGCATCTGTCGCTCGG 60.888 66.667 0.00 0.00 0.00 4.63
468 469 2.887568 GGGTGCATCTGTCGCTCG 60.888 66.667 0.00 0.00 0.00 5.03
469 470 1.812922 CTGGGTGCATCTGTCGCTC 60.813 63.158 0.00 0.00 0.00 5.03
470 471 2.267006 CTGGGTGCATCTGTCGCT 59.733 61.111 0.00 0.00 0.00 4.93
471 472 3.503363 GCTGGGTGCATCTGTCGC 61.503 66.667 0.00 0.00 42.31 5.19
472 473 3.190849 CGCTGGGTGCATCTGTCG 61.191 66.667 0.00 0.00 43.06 4.35
473 474 3.503363 GCGCTGGGTGCATCTGTC 61.503 66.667 0.00 0.00 43.06 3.51
474 475 4.334118 TGCGCTGGGTGCATCTGT 62.334 61.111 9.73 0.00 44.36 3.41
480 481 3.264897 CGTAGATGCGCTGGGTGC 61.265 66.667 9.73 0.00 39.75 5.01
481 482 2.586079 CCGTAGATGCGCTGGGTG 60.586 66.667 9.73 0.00 0.00 4.61
482 483 3.075005 ACCGTAGATGCGCTGGGT 61.075 61.111 9.73 3.82 32.02 4.51
483 484 2.586079 CACCGTAGATGCGCTGGG 60.586 66.667 9.73 3.14 0.00 4.45
484 485 3.264897 GCACCGTAGATGCGCTGG 61.265 66.667 9.73 3.34 0.00 4.85
485 486 3.620428 CGCACCGTAGATGCGCTG 61.620 66.667 9.73 0.00 44.91 5.18
489 490 2.202743 TCTGCGCACCGTAGATGC 60.203 61.111 5.66 0.00 42.90 3.91
490 491 2.233654 GCTCTGCGCACCGTAGATG 61.234 63.158 5.66 0.00 46.06 2.90
491 492 2.105128 GCTCTGCGCACCGTAGAT 59.895 61.111 5.66 0.00 46.06 1.98
520 521 4.473520 TAGCAAGCCAGCTCGCCC 62.474 66.667 0.00 0.00 45.26 6.13
521 522 3.198489 GTAGCAAGCCAGCTCGCC 61.198 66.667 0.00 0.00 45.26 5.54
522 523 1.743252 AAGTAGCAAGCCAGCTCGC 60.743 57.895 3.49 0.00 45.26 5.03
523 524 1.364626 CCAAGTAGCAAGCCAGCTCG 61.365 60.000 3.49 0.00 45.26 5.03
524 525 1.652167 GCCAAGTAGCAAGCCAGCTC 61.652 60.000 3.49 0.00 45.26 4.09
526 527 2.880648 GCCAAGTAGCAAGCCAGC 59.119 61.111 0.00 0.00 0.00 4.85
527 528 0.391130 TACGCCAAGTAGCAAGCCAG 60.391 55.000 0.00 0.00 0.00 4.85
528 529 0.251916 ATACGCCAAGTAGCAAGCCA 59.748 50.000 0.00 0.00 38.94 4.75
529 530 0.938008 GATACGCCAAGTAGCAAGCC 59.062 55.000 0.00 0.00 41.13 4.35
530 531 1.941325 AGATACGCCAAGTAGCAAGC 58.059 50.000 0.00 0.00 43.73 4.01
531 532 3.786635 AGAAGATACGCCAAGTAGCAAG 58.213 45.455 0.00 0.00 43.73 4.01
532 533 3.887621 AGAAGATACGCCAAGTAGCAA 57.112 42.857 0.00 0.00 43.73 3.91
533 534 3.952323 AGTAGAAGATACGCCAAGTAGCA 59.048 43.478 0.00 0.00 43.73 3.49
534 535 4.571372 AGTAGAAGATACGCCAAGTAGC 57.429 45.455 0.00 0.00 41.75 3.58
535 536 5.238868 TGCTAGTAGAAGATACGCCAAGTAG 59.761 44.000 0.00 0.00 38.94 2.57
536 537 5.128205 TGCTAGTAGAAGATACGCCAAGTA 58.872 41.667 0.00 0.00 40.03 2.24
537 538 3.952323 TGCTAGTAGAAGATACGCCAAGT 59.048 43.478 0.00 0.00 0.00 3.16
538 539 4.569761 TGCTAGTAGAAGATACGCCAAG 57.430 45.455 0.00 0.00 0.00 3.61
539 540 4.994907 TTGCTAGTAGAAGATACGCCAA 57.005 40.909 0.00 0.00 0.00 4.52
540 541 4.994907 TTTGCTAGTAGAAGATACGCCA 57.005 40.909 0.00 0.00 0.00 5.69
541 542 4.209495 GCTTTTGCTAGTAGAAGATACGCC 59.791 45.833 14.16 0.00 43.35 5.68
542 543 5.317859 GCTTTTGCTAGTAGAAGATACGC 57.682 43.478 14.16 0.00 43.35 4.42
543 544 6.752351 TCTTGCTTTTGCTAGTAGAAGATACG 59.248 38.462 14.16 1.97 45.93 3.06
544 545 7.976734 TCTCTTGCTTTTGCTAGTAGAAGATAC 59.023 37.037 14.16 0.00 45.93 2.24
545 546 8.067751 TCTCTTGCTTTTGCTAGTAGAAGATA 57.932 34.615 14.16 0.91 45.93 1.98
546 547 6.940739 TCTCTTGCTTTTGCTAGTAGAAGAT 58.059 36.000 14.16 0.00 45.93 2.40
547 548 6.346477 TCTCTTGCTTTTGCTAGTAGAAGA 57.654 37.500 14.16 0.00 45.93 2.87
548 549 5.580297 CCTCTCTTGCTTTTGCTAGTAGAAG 59.420 44.000 6.73 6.73 45.93 2.85
549 550 5.246203 TCCTCTCTTGCTTTTGCTAGTAGAA 59.754 40.000 0.00 0.00 45.93 2.10
550 551 4.772624 TCCTCTCTTGCTTTTGCTAGTAGA 59.227 41.667 0.00 0.00 45.93 2.59
551 552 4.867608 GTCCTCTCTTGCTTTTGCTAGTAG 59.132 45.833 0.00 0.00 45.93 2.57
552 553 4.618460 CGTCCTCTCTTGCTTTTGCTAGTA 60.618 45.833 0.00 0.00 45.93 1.82
553 554 3.669536 GTCCTCTCTTGCTTTTGCTAGT 58.330 45.455 0.00 0.00 45.93 2.57
554 555 2.670414 CGTCCTCTCTTGCTTTTGCTAG 59.330 50.000 0.00 0.00 46.89 3.42
558 559 2.072298 CTCCGTCCTCTCTTGCTTTTG 58.928 52.381 0.00 0.00 0.00 2.44
573 574 2.305927 ACAGGATGATTTGGTTCTCCGT 59.694 45.455 0.00 0.00 39.69 4.69
584 585 6.161381 GCAAGTTTTGATGAACAGGATGATT 58.839 36.000 0.00 0.00 39.69 2.57
593 594 6.864685 TCATCAGATTGCAAGTTTTGATGAAC 59.135 34.615 27.58 0.00 44.47 3.18
595 596 6.578163 TCATCAGATTGCAAGTTTTGATGA 57.422 33.333 26.80 26.80 44.94 2.92
605 606 7.365384 GGAGGGATATAGATCATCAGATTGCAA 60.365 40.741 0.00 0.00 33.72 4.08
618 619 7.068839 CGTTTAGTATGCTGGAGGGATATAGAT 59.931 40.741 0.00 0.00 31.17 1.98
623 624 3.006537 GCGTTTAGTATGCTGGAGGGATA 59.993 47.826 0.00 0.00 35.80 2.59
653 654 3.640967 TGGCAATGATGGGTAATTAAGGC 59.359 43.478 0.00 0.00 0.00 4.35
654 655 6.225318 CAATGGCAATGATGGGTAATTAAGG 58.775 40.000 0.00 0.00 0.00 2.69
667 668 7.930865 GGTAATTAATTAAGGCAATGGCAATGA 59.069 33.333 10.05 0.00 43.71 2.57
670 671 6.587273 GGGTAATTAATTAAGGCAATGGCAA 58.413 36.000 10.05 0.00 43.71 4.52
693 694 2.191786 TTACCCTGATGGCACCACGG 62.192 60.000 0.00 0.00 37.83 4.94
695 696 0.037590 TGTTACCCTGATGGCACCAC 59.962 55.000 0.00 0.00 37.83 4.16
696 697 0.998928 ATGTTACCCTGATGGCACCA 59.001 50.000 0.00 0.00 37.83 4.17
697 698 1.680338 GATGTTACCCTGATGGCACC 58.320 55.000 0.00 0.00 37.83 5.01
698 699 1.299541 CGATGTTACCCTGATGGCAC 58.700 55.000 0.00 0.00 37.83 5.01
719 747 0.398664 AGCCAGCGGGTAGGATTAGT 60.399 55.000 4.36 0.00 36.17 2.24
736 764 2.190161 AGCGGTTTTTGTTTTTCGAGC 58.810 42.857 0.00 0.00 0.00 5.03
1006 1068 3.239253 AAGGAAGCACGACCCGGT 61.239 61.111 0.00 0.00 0.00 5.28
1943 2182 1.216064 TCGGTAGCTGGTACTCCCTA 58.784 55.000 15.74 0.00 0.00 3.53
2043 2282 5.534654 AGGACAGATCAGTCTACTGCTATTC 59.465 44.000 16.73 0.00 43.46 1.75
2324 2564 4.260139 TGCATGAATTTCAGCACAACAT 57.740 36.364 15.15 0.00 29.93 2.71
2521 2761 2.644992 GCAAAGGCGTTGGGACTG 59.355 61.111 14.83 0.00 37.73 3.51
2824 3065 6.640518 AGTCTTCCTTTCAGCGTGATAATTA 58.359 36.000 0.00 0.00 0.00 1.40
3090 3333 6.418101 ACAAATAGGATCTGCTTTCTTGCTA 58.582 36.000 0.00 0.00 0.00 3.49
3271 3521 3.263425 AGTCCAACTGATTGTCCGGTATT 59.737 43.478 0.00 0.00 33.60 1.89
3302 3552 6.092259 CAGCCTAAAACTACTTGGTCACATAC 59.908 42.308 0.00 0.00 0.00 2.39
3408 3658 2.732619 GGTAGCCGGTGAGGGGAAG 61.733 68.421 1.90 0.00 41.48 3.46
3468 3721 1.004745 CCCTCTCCAAAGCTGCCTTTA 59.995 52.381 0.00 0.00 39.20 1.85
3580 3834 4.135747 TGATCGCAGTGGATGTAAATCA 57.864 40.909 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.