AutoCloner

Multiple sequence alignment - TraesCS6B01G260300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G260300	chr6B	100.000	3670	0	0	1	3670	470807713	470811382	0.000000e+00	6778
1	TraesCS6B01G260300	chr6A	94.535	2031	64	11	1148	3143	440427578	440425560	0.000000e+00	3092
2	TraesCS6B01G260300	chr6A	94.008	1018	58	3	1	1016	211882168	211881152	0.000000e+00	1539
3	TraesCS6B01G260300	chr6A	92.035	113	7	2	1014	1126	440427831	440427721	1.360000e-34	158
4	TraesCS6B01G260300	chr6D	94.401	1929	60	18	1014	2894	306025988	306024060	0.000000e+00	2920
5	TraesCS6B01G260300	chr6D	96.000	175	7	0	2890	3064	306010148	306009974	6.000000e-73	285
6	TraesCS6B01G260300	chr2D	94.794	1018	50	3	1	1016	640651686	640650670	0.000000e+00	1583
7	TraesCS6B01G260300	chr1B	86.373	1020	133	6	1	1016	26101599	26102616	0.000000e+00	1109
8	TraesCS6B01G260300	chr1B	85.967	1019	137	6	1	1016	354740734	354739719	0.000000e+00	1085
9	TraesCS6B01G260300	chr5A	85.967	1019	137	6	2	1016	625757482	625756466	0.000000e+00	1085
10	TraesCS6B01G260300	chr5A	97.736	530	4	1	3141	3670	565255733	565255212	0.000000e+00	905
11	TraesCS6B01G260300	chr5A	86.053	674	91	3	1	672	489660001	489660673	0.000000e+00	721
12	TraesCS6B01G260300	chr5A	84.880	582	81	6	1	578	632125123	632124545	6.830000e-162	580
13	TraesCS6B01G260300	chr5A	86.219	283	23	11	3137	3416	471717891	471718160	3.580000e-75	292
14	TraesCS6B01G260300	chr3B	85.770	1019	141	4	1	1016	471828832	471827815	0.000000e+00	1075
15	TraesCS6B01G260300	chr3B	79.245	265	32	12	3141	3395	497104530	497104279	2.930000e-36	163
16	TraesCS6B01G260300	chr7B	98.113	530	2	1	3141	3670	4016658	4016137	0.000000e+00	917
17	TraesCS6B01G260300	chr7B	97.538	528	5	1	3143	3670	216670856	216671375	0.000000e+00	896
18	TraesCS6B01G260300	chr5D	80.138	1017	189	13	1	1009	412719266	412720277	0.000000e+00	747
19	TraesCS6B01G260300	chr2B	87.415	294	25	7	3380	3670	743846829	743847113	9.830000e-86	327
20	TraesCS6B01G260300	chr2B	89.759	166	9	4	3141	3301	27669284	27669446	4.800000e-49	206
21	TraesCS6B01G260300	chr7D	90.083	242	20	3	3140	3379	240521591	240521352	9.900000e-81	311
22	TraesCS6B01G260300	chr7D	90.058	171	10	5	3138	3302	550570979	550570810	7.980000e-52	215
23	TraesCS6B01G260300	chr5B	85.766	274	24	9	3146	3416	703080632	703080371	3.610000e-70	276
24	TraesCS6B01G260300	chr5B	84.892	278	20	14	3142	3415	93454327	93454068	1.010000e-65	261
25	TraesCS6B01G260300	chr4D	84.932	146	16	3	3271	3416	5664388	5664527	3.820000e-30	143
26	TraesCS6B01G260300	chr1A	86.029	136	12	4	2918	3051	112923606	112923736	4.940000e-29	139
27	TraesCS6B01G260300	chr1D	85.401	137	12	5	2918	3051	109442525	109442656	6.390000e-28	135

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G260300	chr6B	470807713	470811382	3669	False	6778	6778	100.000	1	3670	1	chr6B.!!$F1	3669
1	TraesCS6B01G260300	chr6A	440425560	440427831	2271	True	1625	3092	93.285	1014	3143	2	chr6A.!!$R2	2129
2	TraesCS6B01G260300	chr6A	211881152	211882168	1016	True	1539	1539	94.008	1	1016	1	chr6A.!!$R1	1015
3	TraesCS6B01G260300	chr6D	306024060	306025988	1928	True	2920	2920	94.401	1014	2894	1	chr6D.!!$R2	1880
4	TraesCS6B01G260300	chr2D	640650670	640651686	1016	True	1583	1583	94.794	1	1016	1	chr2D.!!$R1	1015
5	TraesCS6B01G260300	chr1B	26101599	26102616	1017	False	1109	1109	86.373	1	1016	1	chr1B.!!$F1	1015
6	TraesCS6B01G260300	chr1B	354739719	354740734	1015	True	1085	1085	85.967	1	1016	1	chr1B.!!$R1	1015
7	TraesCS6B01G260300	chr5A	625756466	625757482	1016	True	1085	1085	85.967	2	1016	1	chr5A.!!$R2	1014
8	TraesCS6B01G260300	chr5A	565255212	565255733	521	True	905	905	97.736	3141	3670	1	chr5A.!!$R1	529
9	TraesCS6B01G260300	chr5A	489660001	489660673	672	False	721	721	86.053	1	672	1	chr5A.!!$F2	671
10	TraesCS6B01G260300	chr5A	632124545	632125123	578	True	580	580	84.880	1	578	1	chr5A.!!$R3	577
11	TraesCS6B01G260300	chr3B	471827815	471828832	1017	True	1075	1075	85.770	1	1016	1	chr3B.!!$R1	1015
12	TraesCS6B01G260300	chr7B	4016137	4016658	521	True	917	917	98.113	3141	3670	1	chr7B.!!$R1	529
13	TraesCS6B01G260300	chr7B	216670856	216671375	519	False	896	896	97.538	3143	3670	1	chr7B.!!$F1	527
14	TraesCS6B01G260300	chr5D	412719266	412720277	1011	False	747	747	80.138	1	1009	1	chr5D.!!$F1	1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
717	721	0.036765	CAAGAATCCCGGACCAACGA	60.037	55.000	0.73	0.0	35.47	3.85	F
1319	1445	1.074623	CAGGCCATCCTCTCCTCCT	60.075	63.158	5.01	0.0	41.93	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1829	1955	0.597637	CAGCTGGTGAACTCGACGTT	60.598	55.0	5.57	0.71	38.91	3.99	R
2952	3127	0.392193	ATGGAGGCTCTGAGTTTGCG	60.392	55.0	15.23	0.00	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
110	111	5.051641	GCACAGAATTTATTAGGTCGAGTCG	60.052	44.000	6.09	6.09	0.00	4.18
114	115	5.593502	AGAATTTATTAGGTCGAGTCGTCCT	59.406	40.000	29.52	29.52	45.87	3.85
135	136	2.223688	TGGTTTTGTCATCAGTTTGCCG	60.224	45.455	0.00	0.00	0.00	5.69
306	308	1.349067	ACCCTCACACCTAACAGGAC	58.651	55.000	0.00	0.00	37.67	3.85
322	324	3.181445	ACAGGACAGGCAACACATTTCTA	60.181	43.478	0.00	0.00	41.41	2.10
325	327	2.749621	GACAGGCAACACATTTCTAGGG	59.250	50.000	0.00	0.00	41.41	3.53
362	364	0.046397	AGGCCTCCCCAAACCTATCT	59.954	55.000	0.00	0.00	35.39	1.98
425	427	2.664402	AAAATAGGGCCGCATCATCT	57.336	45.000	0.00	0.00	0.00	2.90
463	465	0.983378	AATCTGGCCGCCTTAGGTCT	60.983	55.000	11.61	0.00	36.69	3.85
467	469	1.298667	GGCCGCCTTAGGTCTCAAA	59.701	57.895	0.71	0.00	32.02	2.69
550	552	6.053650	TGAGAATGAATAGCATTGGAGACAG	58.946	40.000	0.00	0.00	46.90	3.51
590	593	1.526917	GCGCATATGCCTGAAGGGT	60.527	57.895	21.77	0.00	37.91	4.34
594	597	2.550855	CGCATATGCCTGAAGGGTATGT	60.551	50.000	21.77	0.00	40.62	2.29
661	664	3.620488	TGGCAGACACAATATTTCTCCC	58.380	45.455	0.00	0.00	0.00	4.30
680	683	0.934436	CGCGCTGACCAAAACCAAAG	60.934	55.000	5.56	0.00	0.00	2.77
708	712	2.766828	AGGGTCTCTAACAAGAATCCCG	59.233	50.000	0.00	0.00	36.54	5.14
709	713	2.158943	GGGTCTCTAACAAGAATCCCGG	60.159	54.545	0.00	0.00	0.00	5.73
717	721	0.036765	CAAGAATCCCGGACCAACGA	60.037	55.000	0.73	0.00	35.47	3.85
771	775	5.249393	AGGAAGACTAATGCCTTCTTCTTGA	59.751	40.000	9.72	0.00	43.24	3.02
787	791	4.727507	TCTTGATGTGAGCCTCTCTAAC	57.272	45.455	0.00	0.00	0.00	2.34
927	932	1.332997	GATCTTGGCTATGCTGTGCAC	59.667	52.381	10.75	10.75	43.04	4.57
1102	1107	6.599244	TGACAAATCCTGAGGACAACATAATC	59.401	38.462	1.77	0.00	32.98	1.75
1107	1112	3.209410	CTGAGGACAACATAATCTGCCC	58.791	50.000	0.00	0.00	0.00	5.36
1109	1114	3.266772	TGAGGACAACATAATCTGCCCTT	59.733	43.478	0.00	0.00	0.00	3.95
1113	1118	4.462483	GGACAACATAATCTGCCCTTCAAA	59.538	41.667	0.00	0.00	0.00	2.69
1115	1120	5.324409	ACAACATAATCTGCCCTTCAAAGA	58.676	37.500	0.00	0.00	0.00	2.52
1116	1121	5.183904	ACAACATAATCTGCCCTTCAAAGAC	59.816	40.000	0.00	0.00	0.00	3.01
1117	1122	3.941483	ACATAATCTGCCCTTCAAAGACG	59.059	43.478	0.00	0.00	0.00	4.18
1119	1124	2.568623	ATCTGCCCTTCAAAGACGTT	57.431	45.000	0.00	0.00	0.00	3.99
1120	1125	1.878953	TCTGCCCTTCAAAGACGTTC	58.121	50.000	0.00	0.00	0.00	3.95
1134	1152	8.483743	TCAAAGACGTTCGATTTTTAACATTC	57.516	30.769	0.00	0.00	0.00	2.67
1167	1293	4.395959	TGTAAACAGAAACGTCCTGTCT	57.604	40.909	19.54	11.58	43.42	3.41
1282	1408	2.032528	CCGGACAGGCTGAGCAAA	59.967	61.111	23.66	0.00	0.00	3.68
1319	1445	1.074623	CAGGCCATCCTCTCCTCCT	60.075	63.158	5.01	0.00	41.93	3.69
1712	1838	3.620929	TCCAGAGCGATTACGACATAC	57.379	47.619	0.00	0.00	42.66	2.39
1881	2007	1.841556	GGGAGGTGGTGACCAGTCA	60.842	63.158	3.58	0.00	45.98	3.41
1923	2049	2.125350	CCGTTGCTGGAGGAGAGC	60.125	66.667	0.00	0.00	36.95	4.09
2203	2335	8.522830	TCTTTTACTTTGGCTTATCTTTCATGG	58.477	33.333	0.00	0.00	0.00	3.66
2302	2451	9.104965	CATCAAGATTTGCCAACATTTCATAAT	57.895	29.630	0.00	0.00	0.00	1.28
2365	2514	7.255139	GGTGAAGTTTACAACATGCTAGAGTTT	60.255	37.037	0.00	0.00	0.00	2.66
2386	2535	5.350504	TTTTTCTGAACAATGCTCCCAAA	57.649	34.783	0.00	0.00	0.00	3.28
2468	2617	7.038154	ACTTGAAATAACAGTTAAGCTTGCA	57.962	32.000	9.86	0.00	0.00	4.08
2469	2618	6.918022	ACTTGAAATAACAGTTAAGCTTGCAC	59.082	34.615	9.86	5.84	0.00	4.57
2470	2619	5.448438	TGAAATAACAGTTAAGCTTGCACG	58.552	37.500	9.86	5.29	0.00	5.34
2471	2620	4.419522	AATAACAGTTAAGCTTGCACGG	57.580	40.909	9.86	9.04	0.00	4.94
2472	2621	1.961793	AACAGTTAAGCTTGCACGGA	58.038	45.000	9.86	0.00	0.00	4.69
2473	2622	2.185004	ACAGTTAAGCTTGCACGGAT	57.815	45.000	9.86	0.00	0.00	4.18
2474	2623	2.076863	ACAGTTAAGCTTGCACGGATC	58.923	47.619	9.86	0.00	0.00	3.36
2565	2721	5.046231	ACCTCAAGTTTAGGGAGATCAACTC	60.046	44.000	7.99	0.00	44.24	3.01
2789	2955	1.045350	TCTCTCTGCCCCGAGGATTG	61.045	60.000	0.00	0.00	33.47	2.67
2790	2956	1.306141	TCTCTGCCCCGAGGATTGT	60.306	57.895	0.00	0.00	33.47	2.71
2791	2957	0.032515	TCTCTGCCCCGAGGATTGTA	60.033	55.000	0.00	0.00	33.47	2.41
2793	2959	0.830648	TCTGCCCCGAGGATTGTAAG	59.169	55.000	0.00	0.00	33.47	2.34
2794	2960	0.830648	CTGCCCCGAGGATTGTAAGA	59.169	55.000	0.00	0.00	33.47	2.10
2795	2961	0.830648	TGCCCCGAGGATTGTAAGAG	59.169	55.000	0.00	0.00	33.47	2.85
2796	2962	0.533085	GCCCCGAGGATTGTAAGAGC	60.533	60.000	0.00	0.00	33.47	4.09
2800	2973	2.487934	CCGAGGATTGTAAGAGCATGG	58.512	52.381	0.00	0.00	0.00	3.66
2838	3011	7.517343	AAATGATATTCGCGATGTCATCTAG	57.483	36.000	22.98	4.91	43.35	2.43
2952	3127	1.576356	GAAGGATGTCGAGGTGATGC	58.424	55.000	0.00	0.00	0.00	3.91
2962	3137	0.445436	GAGGTGATGCGCAAACTCAG	59.555	55.000	19.78	0.00	34.59	3.35
2991	3166	7.328404	TCCATATTTACTGCCTCCATAATCA	57.672	36.000	0.00	0.00	0.00	2.57
3034	3209	3.457749	GACATCCCTTTCCTCAATCTCCT	59.542	47.826	0.00	0.00	0.00	3.69
3042	3217	2.485659	TCCTCAATCTCCTTGCCATCT	58.514	47.619	0.00	0.00	34.66	2.90
3102	3277	5.565637	GCGCTCTATATCTTCATGAAGGACA	60.566	44.000	30.33	18.05	38.88	4.02
3662	3840	3.182887	TCCATTAAAACCAGCCCATGT	57.817	42.857	0.00	0.00	0.00	3.21

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
110	111	4.610945	CAAACTGATGACAAAACCAGGAC	58.389	43.478	0.00	0.00	0.00	3.85
114	115	2.223688	CGGCAAACTGATGACAAAACCA	60.224	45.455	0.00	0.00	0.00	3.67
135	136	2.305927	TGGAAGACTCAAGGGATGGAAC	59.694	50.000	0.00	0.00	0.00	3.62
306	308	2.094675	CCCCTAGAAATGTGTTGCCTG	58.905	52.381	0.00	0.00	0.00	4.85
322	324	1.912043	CTGGACTCAAGATCAACCCCT	59.088	52.381	0.00	0.00	0.00	4.79
325	327	2.679349	GCCTCTGGACTCAAGATCAACC	60.679	54.545	0.00	0.00	0.00	3.77
362	364	1.822371	TGTGCGGTCAGAGCAATACTA	59.178	47.619	0.00	0.00	46.97	1.82
425	427	5.523552	CAGATTTCGGACAAGTATGTATGCA	59.476	40.000	0.00	0.00	40.74	3.96
463	465	2.483013	CGCGGGGTTCTATCTCATTTGA	60.483	50.000	0.00	0.00	0.00	2.69
467	469	1.120530	AACGCGGGGTTCTATCTCAT	58.879	50.000	12.47	0.00	31.79	2.90
590	593	1.214217	TAAATGGCACCCCCGACATA	58.786	50.000	0.00	0.00	35.87	2.29
594	597	0.112606	TTGTTAAATGGCACCCCCGA	59.887	50.000	0.00	0.00	35.87	5.14
661	664	0.934436	CTTTGGTTTTGGTCAGCGCG	60.934	55.000	0.00	0.00	0.00	6.86
680	683	1.267121	TGTTAGAGACCCTGTCTGCC	58.733	55.000	0.69	0.00	43.53	4.85
708	712	1.265905	AGCGTTTGATTTCGTTGGTCC	59.734	47.619	0.00	0.00	0.00	4.46
709	713	2.681152	AGCGTTTGATTTCGTTGGTC	57.319	45.000	0.00	0.00	0.00	4.02
717	721	4.569966	TGACATTGCAAAAGCGTTTGATTT	59.430	33.333	26.21	7.14	45.99	2.17
771	775	2.447443	TGTCGTTAGAGAGGCTCACAT	58.553	47.619	18.26	4.30	32.06	3.21
787	791	1.795872	TCCTTTACGTGCACAATGTCG	59.204	47.619	18.64	3.88	0.00	4.35
840	844	0.968393	GTCTCTCCTTCCCAGAGCGT	60.968	60.000	0.00	0.00	37.84	5.07
906	911	0.585357	GCACAGCATAGCCAAGATCG	59.415	55.000	0.00	0.00	0.00	3.69
927	932	3.368531	GGACTATAGGCCGATTAGCTTGG	60.369	52.174	9.45	0.00	0.00	3.61
1102	1107	0.512952	CGAACGTCTTTGAAGGGCAG	59.487	55.000	0.00	0.00	0.00	4.85
1107	1112	7.886191	TGTTAAAAATCGAACGTCTTTGAAG	57.114	32.000	0.00	0.00	0.00	3.02
1109	1114	7.588488	GGAATGTTAAAAATCGAACGTCTTTGA	59.412	33.333	0.00	0.00	0.00	2.69
1113	1118	5.106436	GGGGAATGTTAAAAATCGAACGTCT	60.106	40.000	0.00	0.00	0.00	4.18
1115	1120	4.763279	AGGGGAATGTTAAAAATCGAACGT	59.237	37.500	0.00	0.00	0.00	3.99
1116	1121	5.092781	CAGGGGAATGTTAAAAATCGAACG	58.907	41.667	0.00	0.00	0.00	3.95
1117	1122	6.090783	GTCAGGGGAATGTTAAAAATCGAAC	58.909	40.000	0.00	0.00	0.00	3.95
1119	1124	5.317808	TGTCAGGGGAATGTTAAAAATCGA	58.682	37.500	0.00	0.00	0.00	3.59
1120	1125	5.637006	TGTCAGGGGAATGTTAAAAATCG	57.363	39.130	0.00	0.00	0.00	3.34
1134	1152	3.815809	TCTGTTTACAACTTGTCAGGGG	58.184	45.455	0.00	0.00	0.00	4.79
1183	1309	4.091509	CGAGGTTTGTTTGTATCTTCCGAG	59.908	45.833	0.00	0.00	0.00	4.63
1319	1445	3.650950	GACCTGCCTGGCTCCCAA	61.651	66.667	21.03	0.00	40.22	4.12
1465	1591	2.487428	CACTCCTCGAGCTCCACG	59.513	66.667	6.99	0.00	32.04	4.94
1829	1955	0.597637	CAGCTGGTGAACTCGACGTT	60.598	55.000	5.57	0.71	38.91	3.99
1923	2049	3.806257	GCACGTTGCTTCATATCCG	57.194	52.632	0.00	0.00	40.96	4.18
1963	2089	2.015587	AGACGTAGAGAAGTAAGGGCG	58.984	52.381	0.00	0.00	0.00	6.13
2203	2335	1.287730	CTCGCCTTGTGTCTGCACTC	61.288	60.000	0.00	0.00	45.44	3.51
2302	2451	3.367395	CGTCCAAGAGCAATGTAGTCAGA	60.367	47.826	0.00	0.00	0.00	3.27
2365	2514	4.405358	AGTTTGGGAGCATTGTTCAGAAAA	59.595	37.500	2.83	0.00	0.00	2.29
2386	2535	2.564947	CTGCAGAGTAAGTTCCTCCAGT	59.435	50.000	8.42	0.00	0.00	4.00
2427	2576	1.954035	AGTTGGGAGTAAGGGGAGAC	58.046	55.000	0.00	0.00	0.00	3.36
2565	2721	5.945784	TGTTGAAAATCACCCTCCTTATGAG	59.054	40.000	0.00	0.00	41.07	2.90
2578	2734	5.774184	TCAATGATCCACCTGTTGAAAATCA	59.226	36.000	0.00	0.00	0.00	2.57
2582	2738	3.507233	GCTCAATGATCCACCTGTTGAAA	59.493	43.478	0.00	0.00	0.00	2.69
2748	2914	5.469421	AGAAAGCAGATGATAGCAATGCTAC	59.531	40.000	18.02	17.04	45.10	3.58
2751	2917	4.515944	AGAGAAAGCAGATGATAGCAATGC	59.484	41.667	12.23	12.23	39.65	3.56
2789	2955	8.833231	TTGAGTATTATTAGCCATGCTCTTAC	57.167	34.615	0.00	0.00	40.44	2.34
2790	2956	9.845740	TTTTGAGTATTATTAGCCATGCTCTTA	57.154	29.630	0.00	0.00	40.44	2.10
2791	2957	8.752005	TTTTGAGTATTATTAGCCATGCTCTT	57.248	30.769	0.00	0.00	40.44	2.85
2793	2959	8.786898	TCATTTTGAGTATTATTAGCCATGCTC	58.213	33.333	0.00	0.00	40.44	4.26
2794	2960	8.696043	TCATTTTGAGTATTATTAGCCATGCT	57.304	30.769	0.00	0.00	43.41	3.79
2930	3105	1.938585	TCACCTCGACATCCTTCCTT	58.061	50.000	0.00	0.00	0.00	3.36
2952	3127	0.392193	ATGGAGGCTCTGAGTTTGCG	60.392	55.000	15.23	0.00	0.00	4.85
2962	3137	3.558109	GGAGGCAGTAAATATGGAGGCTC	60.558	52.174	5.78	5.78	44.81	4.70
2991	3166	1.762957	CCATTGACGAGTAGGTCCCAT	59.237	52.381	0.00	0.00	36.07	4.00
3025	3200	3.457012	TCATGAGATGGCAAGGAGATTGA	59.543	43.478	0.00	0.00	41.83	2.57
3034	3209	4.038271	AGGAAACTTCATGAGATGGCAA	57.962	40.909	0.00	0.00	37.44	4.52
3123	3298	5.887480	AGAGATATAGTGGATAGTGGGGT	57.113	43.478	0.00	0.00	0.00	4.95
3504	3682	2.202878	GTAGATGCGAAGGCGGCA	60.203	61.111	13.08	0.00	45.71	5.69
3553	3731	4.415332	TCGAGGCAACGGCGAGTC	62.415	66.667	16.62	7.33	41.93	3.36
3554	3732	4.719369	GTCGAGGCAACGGCGAGT	62.719	66.667	16.62	0.00	46.02	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.