Multiple sequence alignment - TraesCS6B01G258800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G258800 chr6B 100.000 4463 0 0 1 4463 466694618 466699080 0.000000e+00 8242
1 TraesCS6B01G258800 chr6D 93.740 3690 116 42 721 4344 301267770 301271410 0.000000e+00 5428
2 TraesCS6B01G258800 chr6D 94.590 647 31 4 1 645 302034662 302034018 0.000000e+00 998
3 TraesCS6B01G258800 chr6A 93.226 3292 124 37 781 3997 415908072 415904805 0.000000e+00 4752
4 TraesCS6B01G258800 chr6A 93.484 353 10 8 4000 4344 415904548 415904201 3.080000e-141 512
5 TraesCS6B01G258800 chr6A 92.617 149 6 1 652 795 415908249 415908101 4.520000e-50 209
6 TraesCS6B01G258800 chr4B 95.216 648 29 2 1 647 668229434 668230080 0.000000e+00 1024
7 TraesCS6B01G258800 chr4B 95.216 648 30 1 1 647 668526507 668527154 0.000000e+00 1024
8 TraesCS6B01G258800 chr4B 95.062 648 30 2 1 647 669485570 669486216 0.000000e+00 1018
9 TraesCS6B01G258800 chr4B 94.907 648 32 1 1 647 669589197 669589844 0.000000e+00 1013
10 TraesCS6B01G258800 chr4B 94.907 648 30 3 1 647 668624342 668624987 0.000000e+00 1011
11 TraesCS6B01G258800 chr4B 94.599 648 33 2 1 647 668465383 668466029 0.000000e+00 1002
12 TraesCS6B01G258800 chr4B 94.453 649 34 2 1 647 668907289 668907937 0.000000e+00 998
13 TraesCS6B01G258800 chr5A 94.444 648 33 3 1 647 707878396 707879041 0.000000e+00 994
14 TraesCS6B01G258800 chr2A 79.490 1058 167 35 1197 2230 623564709 623563678 0.000000e+00 706
15 TraesCS6B01G258800 chr2B 79.467 1013 174 25 1228 2226 563924023 563923031 0.000000e+00 688
16 TraesCS6B01G258800 chr2D 79.171 1037 165 37 1219 2230 480778603 480777593 0.000000e+00 671
17 TraesCS6B01G258800 chr1D 77.246 668 118 26 1204 1845 217143010 217143669 1.180000e-95 361
18 TraesCS6B01G258800 chr1A 77.246 668 118 26 1204 1845 278141914 278142573 1.180000e-95 361
19 TraesCS6B01G258800 chr1B 76.889 675 117 31 1204 1845 310927094 310927762 3.300000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G258800 chr6B 466694618 466699080 4462 False 8242.000000 8242 100.000 1 4463 1 chr6B.!!$F1 4462
1 TraesCS6B01G258800 chr6D 301267770 301271410 3640 False 5428.000000 5428 93.740 721 4344 1 chr6D.!!$F1 3623
2 TraesCS6B01G258800 chr6D 302034018 302034662 644 True 998.000000 998 94.590 1 645 1 chr6D.!!$R1 644
3 TraesCS6B01G258800 chr6A 415904201 415908249 4048 True 1824.333333 4752 93.109 652 4344 3 chr6A.!!$R1 3692
4 TraesCS6B01G258800 chr4B 668229434 668230080 646 False 1024.000000 1024 95.216 1 647 1 chr4B.!!$F1 646
5 TraesCS6B01G258800 chr4B 668526507 668527154 647 False 1024.000000 1024 95.216 1 647 1 chr4B.!!$F3 646
6 TraesCS6B01G258800 chr4B 669485570 669486216 646 False 1018.000000 1018 95.062 1 647 1 chr4B.!!$F6 646
7 TraesCS6B01G258800 chr4B 669589197 669589844 647 False 1013.000000 1013 94.907 1 647 1 chr4B.!!$F7 646
8 TraesCS6B01G258800 chr4B 668624342 668624987 645 False 1011.000000 1011 94.907 1 647 1 chr4B.!!$F4 646
9 TraesCS6B01G258800 chr4B 668465383 668466029 646 False 1002.000000 1002 94.599 1 647 1 chr4B.!!$F2 646
10 TraesCS6B01G258800 chr4B 668907289 668907937 648 False 998.000000 998 94.453 1 647 1 chr4B.!!$F5 646
11 TraesCS6B01G258800 chr5A 707878396 707879041 645 False 994.000000 994 94.444 1 647 1 chr5A.!!$F1 646
12 TraesCS6B01G258800 chr2A 623563678 623564709 1031 True 706.000000 706 79.490 1197 2230 1 chr2A.!!$R1 1033
13 TraesCS6B01G258800 chr2B 563923031 563924023 992 True 688.000000 688 79.467 1228 2226 1 chr2B.!!$R1 998
14 TraesCS6B01G258800 chr2D 480777593 480778603 1010 True 671.000000 671 79.171 1219 2230 1 chr2D.!!$R1 1011
15 TraesCS6B01G258800 chr1D 217143010 217143669 659 False 361.000000 361 77.246 1204 1845 1 chr1D.!!$F1 641
16 TraesCS6B01G258800 chr1A 278141914 278142573 659 False 361.000000 361 77.246 1204 1845 1 chr1A.!!$F1 641
17 TraesCS6B01G258800 chr1B 310927094 310927762 668 False 346.000000 346 76.889 1204 1845 1 chr1B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 913 0.034337 TTGCCCGTGTCAGTAGTTCC 59.966 55.000 0.00 0.00 0.0 3.62 F
1887 1991 1.003233 GGATCCTTGTCTTTGACCGGT 59.997 52.381 6.92 6.92 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2514 2651 0.593128 GGTGTGATGATAATGGCGCC 59.407 55.0 22.73 22.73 0.0 6.53 R
3466 3614 1.027357 CAAAGGTTGTCTGCTGCTGT 58.973 50.0 0.00 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 1.314534 TGCATGTGATCCAAAGGCCG 61.315 55.000 0.00 0.00 0.00 6.13
238 239 6.617782 AGATGATAGAGGACATATGGTTGG 57.382 41.667 7.80 0.00 0.00 3.77
244 245 2.435805 GAGGACATATGGTTGGAGCTGA 59.564 50.000 7.80 0.00 0.00 4.26
283 284 7.710907 TGATTCCTGTTATGATGTACTAACTGC 59.289 37.037 0.00 0.00 0.00 4.40
363 364 6.279227 GACTGATTGTCAACTCGGATAATG 57.721 41.667 9.48 0.00 44.73 1.90
366 367 5.729510 TGATTGTCAACTCGGATAATGTGA 58.270 37.500 0.00 0.00 30.06 3.58
490 492 2.108075 TGAATTTTGCCCCAGAGAGTCA 59.892 45.455 0.00 0.00 0.00 3.41
493 495 1.981256 TTTGCCCCAGAGAGTCAAAC 58.019 50.000 0.00 0.00 0.00 2.93
497 499 0.679505 CCCCAGAGAGTCAAACGTGA 59.320 55.000 0.00 0.00 0.00 4.35
516 518 4.329801 CGTGATTGCACATGAACTAGCTAA 59.670 41.667 0.00 0.00 45.41 3.09
599 601 7.130775 TCCCCTACTACTTAAAGATGTAAGCT 58.869 38.462 0.00 0.00 34.92 3.74
648 650 8.697846 AGTAAAGTTGTAAAAACAAAAGAGGC 57.302 30.769 0.00 0.00 0.00 4.70
649 651 8.528643 AGTAAAGTTGTAAAAACAAAAGAGGCT 58.471 29.630 0.00 0.00 0.00 4.58
650 652 7.827819 AAAGTTGTAAAAACAAAAGAGGCTC 57.172 32.000 6.34 6.34 0.00 4.70
658 660 1.023513 CAAAAGAGGCTCTCCGGCAG 61.024 60.000 19.03 1.39 41.46 4.85
680 682 1.346395 TCAACCGAATGCAGGTACACT 59.654 47.619 0.00 0.00 41.95 3.55
682 684 2.930040 CAACCGAATGCAGGTACACTAG 59.070 50.000 0.00 0.00 41.95 2.57
779 787 0.250338 ACTTGGGCGAAAGTGACTCC 60.250 55.000 3.67 0.00 38.95 3.85
800 851 3.490896 CCAGATACCAAATGTCACGATCG 59.509 47.826 14.88 14.88 0.00 3.69
851 913 0.034337 TTGCCCGTGTCAGTAGTTCC 59.966 55.000 0.00 0.00 0.00 3.62
1016 1078 3.381590 TCACTGATGAATGGGACTCGTAG 59.618 47.826 0.00 0.00 0.00 3.51
1537 1641 3.628280 GAGAAGCCGGCGTCGTTCT 62.628 63.158 32.01 27.97 35.40 3.01
1539 1643 3.909258 GAAGCCGGCGTCGTTCTCA 62.909 63.158 26.37 0.00 33.95 3.27
1602 1706 4.436998 GTGCCGAGGTACTGCGCT 62.437 66.667 9.73 0.00 41.55 5.92
1887 1991 1.003233 GGATCCTTGTCTTTGACCGGT 59.997 52.381 6.92 6.92 0.00 5.28
2434 2571 1.082117 CGCGCAAGAAGTCCCGTATT 61.082 55.000 8.75 0.00 43.02 1.89
2677 2814 0.759346 GACTCATGTATCCGGGGCTT 59.241 55.000 0.00 0.00 0.00 4.35
2680 2817 1.961277 CATGTATCCGGGGCTTCGC 60.961 63.158 0.00 0.00 0.00 4.70
2705 2842 1.284657 CGATCATGTCAGTCCTGCAC 58.715 55.000 0.00 0.00 0.00 4.57
2707 2844 0.986527 ATCATGTCAGTCCTGCACCA 59.013 50.000 0.00 0.00 0.00 4.17
2713 2850 1.746615 CAGTCCTGCACCAATCCCG 60.747 63.158 0.00 0.00 0.00 5.14
2724 2867 2.420022 CACCAATCCCGTCAAGAATCAC 59.580 50.000 0.00 0.00 0.00 3.06
2836 2979 2.058595 GGGGCTAGTGCTCTTCGGA 61.059 63.158 0.00 0.00 40.19 4.55
2839 2982 0.246635 GGCTAGTGCTCTTCGGACAA 59.753 55.000 0.00 0.00 39.59 3.18
2842 2985 2.338500 CTAGTGCTCTTCGGACAAACC 58.662 52.381 0.00 0.00 36.26 3.27
2853 2996 2.824936 TCGGACAAACCATACTAACGGA 59.175 45.455 0.00 0.00 38.90 4.69
2995 3141 1.040646 TTCAGAACAGTGGCTCGACT 58.959 50.000 0.00 0.00 0.00 4.18
3178 3324 0.317160 TGTCCGAGACGTTCTGCATT 59.683 50.000 0.00 0.00 34.95 3.56
3190 3336 2.046023 TGCATTGAGGGTGCGGAG 60.046 61.111 0.00 0.00 45.37 4.63
3265 3411 0.605589 ACGAGCCTTTCAGGTGAGAG 59.394 55.000 0.00 0.00 37.80 3.20
3267 3413 0.739112 GAGCCTTTCAGGTGAGAGCG 60.739 60.000 0.00 0.00 37.80 5.03
3293 3440 3.678548 CCCTCTCGTGTTAAACTTGCTAC 59.321 47.826 0.00 0.00 0.00 3.58
3294 3441 4.304110 CCTCTCGTGTTAAACTTGCTACA 58.696 43.478 0.00 0.00 0.00 2.74
3296 3443 5.107453 CCTCTCGTGTTAAACTTGCTACAAG 60.107 44.000 5.80 5.80 0.00 3.16
3300 3447 7.492020 TCTCGTGTTAAACTTGCTACAAGTAAA 59.508 33.333 12.98 8.33 0.00 2.01
3301 3448 8.145316 TCGTGTTAAACTTGCTACAAGTAAAT 57.855 30.769 12.98 6.11 0.00 1.40
3302 3449 9.258826 TCGTGTTAAACTTGCTACAAGTAAATA 57.741 29.630 12.98 7.00 0.00 1.40
3303 3450 9.309796 CGTGTTAAACTTGCTACAAGTAAATAC 57.690 33.333 12.98 15.32 0.00 1.89
3343 3490 3.758554 CAGAAATTCAGAATGGACCGGTT 59.241 43.478 9.42 0.00 36.16 4.44
3453 3601 2.639286 GCTGGGAGCAACAACACG 59.361 61.111 0.00 0.00 41.89 4.49
3455 3603 2.904866 TGGGAGCAACAACACGGC 60.905 61.111 0.00 0.00 0.00 5.68
3464 3612 0.246635 AACAACACGGCGAGCTAGAT 59.753 50.000 16.62 0.00 0.00 1.98
3466 3614 1.475280 ACAACACGGCGAGCTAGATAA 59.525 47.619 16.62 0.00 0.00 1.75
3475 3623 2.392821 CGAGCTAGATAACAGCAGCAG 58.607 52.381 0.00 0.00 41.66 4.24
3476 3624 2.033927 CGAGCTAGATAACAGCAGCAGA 59.966 50.000 0.00 0.00 41.66 4.26
3482 3630 2.304180 AGATAACAGCAGCAGACAACCT 59.696 45.455 0.00 0.00 0.00 3.50
3508 3656 2.493713 GAGCATCGTTCGTCCATACT 57.506 50.000 0.00 0.00 0.00 2.12
3509 3657 2.810650 GAGCATCGTTCGTCCATACTT 58.189 47.619 0.00 0.00 0.00 2.24
3510 3658 3.961182 GAGCATCGTTCGTCCATACTTA 58.039 45.455 0.00 0.00 0.00 2.24
3515 3663 5.919141 GCATCGTTCGTCCATACTTAGTATT 59.081 40.000 1.59 0.00 0.00 1.89
3517 3665 6.682423 TCGTTCGTCCATACTTAGTATTCA 57.318 37.500 1.59 0.00 0.00 2.57
3569 3745 5.782893 TTCAATTGATTTCGGAACCAGTT 57.217 34.783 9.40 0.00 0.00 3.16
3570 3746 6.885952 TTCAATTGATTTCGGAACCAGTTA 57.114 33.333 9.40 0.00 0.00 2.24
3571 3747 6.249035 TCAATTGATTTCGGAACCAGTTAC 57.751 37.500 3.38 0.00 0.00 2.50
3572 3748 5.182380 TCAATTGATTTCGGAACCAGTTACC 59.818 40.000 3.38 0.00 0.00 2.85
3573 3749 3.773418 TGATTTCGGAACCAGTTACCA 57.227 42.857 0.00 0.00 0.00 3.25
3574 3750 3.670625 TGATTTCGGAACCAGTTACCAG 58.329 45.455 0.00 0.00 0.00 4.00
3575 3751 3.071892 TGATTTCGGAACCAGTTACCAGT 59.928 43.478 0.00 0.00 0.00 4.00
3576 3752 4.283978 TGATTTCGGAACCAGTTACCAGTA 59.716 41.667 0.00 0.00 0.00 2.74
3577 3753 4.895668 TTTCGGAACCAGTTACCAGTAT 57.104 40.909 0.00 0.00 0.00 2.12
3578 3754 3.880047 TCGGAACCAGTTACCAGTATG 57.120 47.619 0.00 0.00 0.00 2.39
3600 3776 5.994250 TGGCATAGTAGCTTTCTTTCATCT 58.006 37.500 0.00 0.00 34.17 2.90
3601 3777 7.124573 TGGCATAGTAGCTTTCTTTCATCTA 57.875 36.000 0.00 0.00 34.17 1.98
3628 3812 0.396435 TCGTGTCCAATGAGGCAGTT 59.604 50.000 0.00 0.00 37.29 3.16
3670 3857 5.604231 TCCATGTACTAGCATCCTTCTTGAT 59.396 40.000 0.00 0.00 0.00 2.57
3705 3895 2.280628 GAGCAGTACTTGAATTCCCGG 58.719 52.381 2.27 0.00 0.00 5.73
3706 3896 1.906574 AGCAGTACTTGAATTCCCGGA 59.093 47.619 0.73 0.00 0.00 5.14
4296 4754 3.793465 GCTTTCCGCTGATATTTTGGCTC 60.793 47.826 0.00 0.00 35.14 4.70
4302 4760 4.107622 CGCTGATATTTTGGCTCCTTTTG 58.892 43.478 0.00 0.00 0.00 2.44
4303 4761 4.436332 GCTGATATTTTGGCTCCTTTTGG 58.564 43.478 0.00 0.00 42.21 3.28
4305 4763 5.654497 CTGATATTTTGGCTCCTTTTGGAC 58.346 41.667 0.00 0.00 45.19 4.02
4321 4779 2.915659 ACGGACACCTTGCTCGGA 60.916 61.111 0.00 0.00 0.00 4.55
4335 4793 2.081425 CTCGGATGCCTCGCTAGCTT 62.081 60.000 13.93 0.00 0.00 3.74
4336 4794 1.953138 CGGATGCCTCGCTAGCTTG 60.953 63.158 13.93 5.01 0.00 4.01
4337 4795 2.250237 GGATGCCTCGCTAGCTTGC 61.250 63.158 13.93 10.33 0.00 4.01
4338 4796 1.227497 GATGCCTCGCTAGCTTGCT 60.227 57.895 17.91 0.00 0.00 3.91
4341 4799 2.107953 CCTCGCTAGCTTGCTCCC 59.892 66.667 17.91 0.00 0.00 4.30
4342 4800 2.430610 CCTCGCTAGCTTGCTCCCT 61.431 63.158 17.91 0.00 0.00 4.20
4343 4801 1.067250 CTCGCTAGCTTGCTCCCTC 59.933 63.158 17.91 0.00 0.00 4.30
4344 4802 1.380515 TCGCTAGCTTGCTCCCTCT 60.381 57.895 17.91 0.00 0.00 3.69
4345 4803 1.067250 CGCTAGCTTGCTCCCTCTC 59.933 63.158 17.91 0.00 0.00 3.20
4346 4804 1.391157 CGCTAGCTTGCTCCCTCTCT 61.391 60.000 17.91 0.00 0.00 3.10
4347 4805 0.829990 GCTAGCTTGCTCCCTCTCTT 59.170 55.000 13.17 0.00 0.00 2.85
4348 4806 2.035632 GCTAGCTTGCTCCCTCTCTTA 58.964 52.381 13.17 0.00 0.00 2.10
4349 4807 2.223947 GCTAGCTTGCTCCCTCTCTTAC 60.224 54.545 13.17 0.00 0.00 2.34
4350 4808 0.820871 AGCTTGCTCCCTCTCTTACG 59.179 55.000 0.00 0.00 0.00 3.18
4351 4809 0.818296 GCTTGCTCCCTCTCTTACGA 59.182 55.000 0.00 0.00 0.00 3.43
4352 4810 1.410882 GCTTGCTCCCTCTCTTACGAT 59.589 52.381 0.00 0.00 0.00 3.73
4353 4811 2.801342 GCTTGCTCCCTCTCTTACGATG 60.801 54.545 0.00 0.00 0.00 3.84
4354 4812 0.747255 TGCTCCCTCTCTTACGATGC 59.253 55.000 0.00 0.00 0.00 3.91
4355 4813 0.032815 GCTCCCTCTCTTACGATGCC 59.967 60.000 0.00 0.00 0.00 4.40
4356 4814 0.312416 CTCCCTCTCTTACGATGCCG 59.688 60.000 0.00 0.00 42.50 5.69
4370 4828 4.868581 CGATGCCGTTTTTCTTTCTTTC 57.131 40.909 0.00 0.00 0.00 2.62
4371 4829 3.668656 CGATGCCGTTTTTCTTTCTTTCC 59.331 43.478 0.00 0.00 0.00 3.13
4372 4830 4.556699 CGATGCCGTTTTTCTTTCTTTCCT 60.557 41.667 0.00 0.00 0.00 3.36
4373 4831 4.729227 TGCCGTTTTTCTTTCTTTCCTT 57.271 36.364 0.00 0.00 0.00 3.36
4374 4832 5.079689 TGCCGTTTTTCTTTCTTTCCTTT 57.920 34.783 0.00 0.00 0.00 3.11
4375 4833 5.483811 TGCCGTTTTTCTTTCTTTCCTTTT 58.516 33.333 0.00 0.00 0.00 2.27
4376 4834 5.350091 TGCCGTTTTTCTTTCTTTCCTTTTG 59.650 36.000 0.00 0.00 0.00 2.44
4377 4835 5.220586 GCCGTTTTTCTTTCTTTCCTTTTGG 60.221 40.000 0.00 0.00 42.21 3.28
4378 4836 5.220586 CCGTTTTTCTTTCTTTCCTTTTGGC 60.221 40.000 0.00 0.00 40.12 4.52
4379 4837 5.350091 CGTTTTTCTTTCTTTCCTTTTGGCA 59.650 36.000 0.00 0.00 40.12 4.92
4380 4838 6.128418 CGTTTTTCTTTCTTTCCTTTTGGCAA 60.128 34.615 0.00 0.00 40.12 4.52
4381 4839 7.572168 CGTTTTTCTTTCTTTCCTTTTGGCAAA 60.572 33.333 8.93 8.93 40.12 3.68
4382 4840 7.936496 TTTTCTTTCTTTCCTTTTGGCAAAT 57.064 28.000 14.29 0.00 40.12 2.32
4383 4841 7.552458 TTTCTTTCTTTCCTTTTGGCAAATC 57.448 32.000 14.29 0.00 40.12 2.17
4384 4842 6.484364 TCTTTCTTTCCTTTTGGCAAATCT 57.516 33.333 14.29 0.00 40.12 2.40
4385 4843 6.888105 TCTTTCTTTCCTTTTGGCAAATCTT 58.112 32.000 14.29 0.00 40.12 2.40
4386 4844 6.762661 TCTTTCTTTCCTTTTGGCAAATCTTG 59.237 34.615 14.29 4.86 40.12 3.02
4398 4856 3.763097 CAAATCTTGCTATGCGGTTGA 57.237 42.857 0.00 0.00 0.00 3.18
4399 4857 4.095410 CAAATCTTGCTATGCGGTTGAA 57.905 40.909 0.00 0.00 0.00 2.69
4400 4858 4.484236 CAAATCTTGCTATGCGGTTGAAA 58.516 39.130 0.00 0.00 0.00 2.69
4401 4859 4.782019 AATCTTGCTATGCGGTTGAAAA 57.218 36.364 0.00 0.00 0.00 2.29
4402 4860 4.782019 ATCTTGCTATGCGGTTGAAAAA 57.218 36.364 0.00 0.00 0.00 1.94
4403 4861 4.782019 TCTTGCTATGCGGTTGAAAAAT 57.218 36.364 0.00 0.00 0.00 1.82
4404 4862 4.732784 TCTTGCTATGCGGTTGAAAAATC 58.267 39.130 0.00 0.00 0.00 2.17
4405 4863 3.129852 TGCTATGCGGTTGAAAAATCG 57.870 42.857 0.00 0.00 0.00 3.34
4406 4864 2.744741 TGCTATGCGGTTGAAAAATCGA 59.255 40.909 0.00 0.00 0.00 3.59
4407 4865 3.189495 TGCTATGCGGTTGAAAAATCGAA 59.811 39.130 0.00 0.00 0.00 3.71
4408 4866 3.786048 GCTATGCGGTTGAAAAATCGAAG 59.214 43.478 0.00 0.00 0.00 3.79
4409 4867 4.436852 GCTATGCGGTTGAAAAATCGAAGA 60.437 41.667 0.00 0.00 45.75 2.87
4410 4868 3.536158 TGCGGTTGAAAAATCGAAGAG 57.464 42.857 0.00 0.00 43.63 2.85
4411 4869 2.875933 TGCGGTTGAAAAATCGAAGAGT 59.124 40.909 0.00 0.00 43.63 3.24
4425 4883 7.793907 AATCGAAGAGTTAGTAAAGTTCGTC 57.206 36.000 16.22 8.32 43.63 4.20
4426 4884 5.693814 TCGAAGAGTTAGTAAAGTTCGTCC 58.306 41.667 16.22 0.00 0.00 4.79
4427 4885 5.239306 TCGAAGAGTTAGTAAAGTTCGTCCA 59.761 40.000 16.22 2.53 0.00 4.02
4428 4886 6.072286 TCGAAGAGTTAGTAAAGTTCGTCCAT 60.072 38.462 16.22 0.00 0.00 3.41
4429 4887 6.033619 CGAAGAGTTAGTAAAGTTCGTCCATG 59.966 42.308 11.61 0.00 0.00 3.66
4430 4888 6.585695 AGAGTTAGTAAAGTTCGTCCATGA 57.414 37.500 0.00 0.00 0.00 3.07
4431 4889 6.388278 AGAGTTAGTAAAGTTCGTCCATGAC 58.612 40.000 0.00 0.00 0.00 3.06
4432 4890 6.208994 AGAGTTAGTAAAGTTCGTCCATGACT 59.791 38.462 0.00 0.00 0.00 3.41
4433 4891 6.157211 AGTTAGTAAAGTTCGTCCATGACTG 58.843 40.000 0.00 0.00 0.00 3.51
4434 4892 3.326747 AGTAAAGTTCGTCCATGACTGC 58.673 45.455 0.00 0.00 0.00 4.40
4435 4893 1.523758 AAAGTTCGTCCATGACTGCC 58.476 50.000 0.00 0.00 0.00 4.85
4436 4894 0.396435 AAGTTCGTCCATGACTGCCA 59.604 50.000 0.00 0.00 0.00 4.92
4437 4895 0.036952 AGTTCGTCCATGACTGCCAG 60.037 55.000 0.00 0.00 0.00 4.85
4438 4896 1.021390 GTTCGTCCATGACTGCCAGG 61.021 60.000 0.00 0.00 0.00 4.45
4439 4897 1.191489 TTCGTCCATGACTGCCAGGA 61.191 55.000 0.00 0.00 0.00 3.86
4440 4898 1.153489 CGTCCATGACTGCCAGGAG 60.153 63.158 0.00 0.00 0.00 3.69
4441 4899 1.892819 CGTCCATGACTGCCAGGAGT 61.893 60.000 0.00 0.00 0.00 3.85
4442 4900 0.107945 GTCCATGACTGCCAGGAGTC 60.108 60.000 11.94 11.94 42.46 3.36
4443 4901 1.153489 CCATGACTGCCAGGAGTCG 60.153 63.158 13.65 1.80 44.68 4.18
4444 4902 1.812922 CATGACTGCCAGGAGTCGC 60.813 63.158 13.65 0.00 44.68 5.19
4445 4903 2.285773 ATGACTGCCAGGAGTCGCA 61.286 57.895 13.65 0.00 44.68 5.10
4446 4904 1.620739 ATGACTGCCAGGAGTCGCAT 61.621 55.000 13.65 1.91 44.68 4.73
4447 4905 1.520342 GACTGCCAGGAGTCGCATC 60.520 63.158 3.44 0.00 33.39 3.91
4448 4906 2.584418 CTGCCAGGAGTCGCATCG 60.584 66.667 0.00 0.00 33.78 3.84
4449 4907 4.819761 TGCCAGGAGTCGCATCGC 62.820 66.667 0.00 0.00 0.00 4.58
4450 4908 4.819761 GCCAGGAGTCGCATCGCA 62.820 66.667 0.00 0.00 0.00 5.10
4451 4909 2.107750 CCAGGAGTCGCATCGCAT 59.892 61.111 0.00 0.00 0.00 4.73
4452 4910 1.953138 CCAGGAGTCGCATCGCATC 60.953 63.158 0.00 0.00 0.00 3.91
4453 4911 2.026734 AGGAGTCGCATCGCATCG 59.973 61.111 0.00 0.00 0.00 3.84
4454 4912 3.696426 GGAGTCGCATCGCATCGC 61.696 66.667 0.00 0.00 0.00 4.58
4455 4913 2.656651 GAGTCGCATCGCATCGCT 60.657 61.111 0.00 0.00 0.00 4.93
4456 4914 2.202797 AGTCGCATCGCATCGCTT 60.203 55.556 0.00 0.00 0.00 4.68
4457 4915 1.756375 GAGTCGCATCGCATCGCTTT 61.756 55.000 0.00 0.00 0.00 3.51
4458 4916 0.527600 AGTCGCATCGCATCGCTTTA 60.528 50.000 0.00 0.00 0.00 1.85
4459 4917 0.111530 GTCGCATCGCATCGCTTTAG 60.112 55.000 0.00 0.00 0.00 1.85
4460 4918 0.527600 TCGCATCGCATCGCTTTAGT 60.528 50.000 0.00 0.00 0.00 2.24
4461 4919 0.301687 CGCATCGCATCGCTTTAGTT 59.698 50.000 0.00 0.00 0.00 2.24
4462 4920 1.734885 GCATCGCATCGCTTTAGTTG 58.265 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.322828 GGCCTTTGGATCACATGCAATAT 59.677 43.478 0.00 0.00 40.34 1.28
105 106 1.810755 CCAACCTTCCCTCTTTAACGC 59.189 52.381 0.00 0.00 0.00 4.84
206 207 3.442273 GTCCTCTATCATCTCGGATGACC 59.558 52.174 15.81 0.00 0.00 4.02
238 239 4.494350 TCAATGAGCTTGTTTTCAGCTC 57.506 40.909 13.86 13.86 43.95 4.09
244 245 5.796424 ACAGGAATCAATGAGCTTGTTTT 57.204 34.783 0.00 0.00 36.20 2.43
283 284 1.891150 ACTTCAAAGCCATTGCCTCAG 59.109 47.619 0.00 0.00 38.98 3.35
490 492 3.988379 AGTTCATGTGCAATCACGTTT 57.012 38.095 0.00 0.00 46.01 3.60
493 495 2.674852 AGCTAGTTCATGTGCAATCACG 59.325 45.455 0.00 0.00 46.01 4.35
497 499 6.459298 GCAATCTTAGCTAGTTCATGTGCAAT 60.459 38.462 0.00 0.00 0.00 3.56
516 518 4.319177 ACAAAGCGAACTTCTAGCAATCT 58.681 39.130 0.00 0.00 34.05 2.40
599 601 9.690913 ACTTCCTCTTTATTCATTCATGATCAA 57.309 29.630 0.00 0.00 36.56 2.57
634 636 2.623416 CCGGAGAGCCTCTTTTGTTTTT 59.377 45.455 0.00 0.00 0.00 1.94
639 641 1.003355 TGCCGGAGAGCCTCTTTTG 60.003 57.895 5.05 0.00 0.00 2.44
648 650 1.738099 CGGTTGAACTGCCGGAGAG 60.738 63.158 5.05 1.60 43.85 3.20
649 651 2.342279 CGGTTGAACTGCCGGAGA 59.658 61.111 5.05 0.00 43.85 3.71
658 660 2.095919 GTGTACCTGCATTCGGTTGAAC 60.096 50.000 0.90 0.00 36.81 3.18
680 682 5.471797 TGAAATTCGATGCAAAACACCTCTA 59.528 36.000 0.00 0.00 0.00 2.43
682 684 4.545610 TGAAATTCGATGCAAAACACCTC 58.454 39.130 0.00 0.00 0.00 3.85
779 787 4.112634 ACGATCGTGACATTTGGTATCTG 58.887 43.478 22.06 0.00 0.00 2.90
851 913 1.603293 CACTGCACAGTACTCGTACG 58.397 55.000 9.53 9.53 40.20 3.67
1016 1078 1.719780 CTCTCACAACGAACGGCTTAC 59.280 52.381 0.00 0.00 0.00 2.34
1502 1600 2.584418 CCTGCTCGTCATCAGCCG 60.584 66.667 0.00 0.00 35.89 5.52
1537 1641 1.000163 GGACTGCGTCAGAGTCTTTGA 60.000 52.381 12.77 0.00 39.91 2.69
1539 1643 0.039074 CGGACTGCGTCAGAGTCTTT 60.039 55.000 12.77 0.00 39.91 2.52
1602 1706 2.721167 CCGCGGGAAGATGGTCTCA 61.721 63.158 20.10 0.00 0.00 3.27
1719 1823 3.503363 GTGGTGAGCAGATGCCGC 61.503 66.667 0.14 0.11 43.38 6.53
1953 2075 3.371063 GCCTCGACCACGTCCTCA 61.371 66.667 0.00 0.00 40.69 3.86
2222 2344 4.752879 CGGGGGTGTAGTGCCGTG 62.753 72.222 0.00 0.00 0.00 4.94
2514 2651 0.593128 GGTGTGATGATAATGGCGCC 59.407 55.000 22.73 22.73 0.00 6.53
2517 2654 2.545526 CTGTCGGTGTGATGATAATGGC 59.454 50.000 0.00 0.00 0.00 4.40
2677 2814 1.519234 GACATGATCGTGGCAGCGA 60.519 57.895 16.28 13.02 45.32 4.93
2705 2842 2.017049 GGTGATTCTTGACGGGATTGG 58.983 52.381 0.00 0.00 0.00 3.16
2707 2844 2.305927 AGTGGTGATTCTTGACGGGATT 59.694 45.455 0.00 0.00 0.00 3.01
2713 2850 3.070018 CAGGTCAGTGGTGATTCTTGAC 58.930 50.000 0.00 0.00 34.36 3.18
2724 2867 1.219124 CCGATGGTCAGGTCAGTGG 59.781 63.158 0.00 0.00 0.00 4.00
2836 2979 3.596214 CTGCTCCGTTAGTATGGTTTGT 58.404 45.455 0.00 0.00 0.00 2.83
2839 2982 1.553248 TGCTGCTCCGTTAGTATGGTT 59.447 47.619 0.00 0.00 0.00 3.67
2842 2985 2.871182 TCTGCTGCTCCGTTAGTATG 57.129 50.000 0.00 0.00 0.00 2.39
2853 2996 2.125229 CACGGCTCATCTGCTGCT 60.125 61.111 0.00 0.00 42.69 4.24
2877 3020 4.383861 CTGAGCTCACGCCTGCCA 62.384 66.667 13.74 0.00 36.60 4.92
2903 3049 4.070552 GAGCGAGCTGTTCCCGGT 62.071 66.667 0.84 0.00 36.70 5.28
2915 3061 1.300620 CGGTGTTCCAGTTGAGCGA 60.301 57.895 0.00 0.00 0.00 4.93
2995 3141 1.067060 CTCTCCGGCGATGTGTTATCA 59.933 52.381 9.30 0.00 0.00 2.15
3024 3170 1.737793 CGTGGCTATTGTCTCCAAACC 59.262 52.381 0.00 0.00 33.44 3.27
3058 3204 2.573340 CATTGCCCGGGCTTCAAC 59.427 61.111 43.34 17.00 42.51 3.18
3178 3324 3.385384 CTCAGCTCCGCACCCTCA 61.385 66.667 0.00 0.00 0.00 3.86
3265 3411 2.288961 TTAACACGAGAGGGATTCGC 57.711 50.000 0.00 0.00 41.57 4.70
3267 3413 4.142881 GCAAGTTTAACACGAGAGGGATTC 60.143 45.833 0.00 0.00 38.45 2.52
3330 3477 5.134661 TCAAGTTAAAAACCGGTCCATTCT 58.865 37.500 8.04 0.00 0.00 2.40
3343 3490 3.690139 TGGTGCGTCAGTTCAAGTTAAAA 59.310 39.130 0.00 0.00 0.00 1.52
3424 3572 1.472376 GCTCCCAGCATCTGTCAGTAC 60.472 57.143 0.00 0.00 41.89 2.73
3427 3575 4.536316 GCTCCCAGCATCTGTCAG 57.464 61.111 0.00 0.00 41.89 3.51
3453 3601 1.777101 CTGCTGTTATCTAGCTCGCC 58.223 55.000 0.00 0.00 41.66 5.54
3455 3603 2.033927 TCTGCTGCTGTTATCTAGCTCG 59.966 50.000 0.00 0.00 41.66 5.03
3464 3612 2.618241 CAAAGGTTGTCTGCTGCTGTTA 59.382 45.455 0.00 0.00 0.00 2.41
3466 3614 1.027357 CAAAGGTTGTCTGCTGCTGT 58.973 50.000 0.00 0.00 0.00 4.40
3475 3623 1.244019 ATGCTCGCCCAAAGGTTGTC 61.244 55.000 0.00 0.00 34.57 3.18
3476 3624 1.228552 ATGCTCGCCCAAAGGTTGT 60.229 52.632 0.00 0.00 34.57 3.32
3482 3630 2.387445 CGAACGATGCTCGCCCAAA 61.387 57.895 5.63 0.00 45.12 3.28
3507 3655 6.856135 TCATTGAGCTGCATGAATACTAAG 57.144 37.500 1.02 0.00 0.00 2.18
3508 3656 6.856135 CTCATTGAGCTGCATGAATACTAA 57.144 37.500 1.02 0.00 0.00 2.24
3535 3683 9.065871 CCGAAATCAATTGAAAGAACAAGATAC 57.934 33.333 13.09 0.00 33.22 2.24
3569 3745 5.839063 AGAAAGCTACTATGCCATACTGGTA 59.161 40.000 0.00 0.00 40.46 3.25
3570 3746 4.656112 AGAAAGCTACTATGCCATACTGGT 59.344 41.667 0.00 0.00 40.46 4.00
3571 3747 5.220710 AGAAAGCTACTATGCCATACTGG 57.779 43.478 0.00 0.00 41.55 4.00
3572 3748 6.763135 TGAAAGAAAGCTACTATGCCATACTG 59.237 38.462 0.00 0.00 0.00 2.74
3573 3749 6.889198 TGAAAGAAAGCTACTATGCCATACT 58.111 36.000 0.00 0.00 0.00 2.12
3574 3750 7.659390 AGATGAAAGAAAGCTACTATGCCATAC 59.341 37.037 0.00 0.00 0.00 2.39
3575 3751 7.739825 AGATGAAAGAAAGCTACTATGCCATA 58.260 34.615 0.00 0.00 0.00 2.74
3576 3752 6.599445 AGATGAAAGAAAGCTACTATGCCAT 58.401 36.000 0.00 0.00 0.00 4.40
3577 3753 5.994250 AGATGAAAGAAAGCTACTATGCCA 58.006 37.500 0.00 0.00 0.00 4.92
3578 3754 7.170658 CACTAGATGAAAGAAAGCTACTATGCC 59.829 40.741 0.00 0.00 0.00 4.40
3579 3755 7.307101 GCACTAGATGAAAGAAAGCTACTATGC 60.307 40.741 0.00 0.00 0.00 3.14
3580 3756 7.925483 AGCACTAGATGAAAGAAAGCTACTATG 59.075 37.037 0.00 0.00 0.00 2.23
3581 3757 8.017418 AGCACTAGATGAAAGAAAGCTACTAT 57.983 34.615 0.00 0.00 0.00 2.12
3582 3758 7.340743 AGAGCACTAGATGAAAGAAAGCTACTA 59.659 37.037 0.00 0.00 0.00 1.82
3583 3759 6.154363 AGAGCACTAGATGAAAGAAAGCTACT 59.846 38.462 0.00 0.00 0.00 2.57
3584 3760 6.337356 AGAGCACTAGATGAAAGAAAGCTAC 58.663 40.000 0.00 0.00 0.00 3.58
3600 3776 2.560981 TCATTGGACACGAAGAGCACTA 59.439 45.455 0.00 0.00 0.00 2.74
3601 3777 1.344438 TCATTGGACACGAAGAGCACT 59.656 47.619 0.00 0.00 0.00 4.40
3628 3812 3.427573 TGGATTACACGAGGAGAACTGA 58.572 45.455 0.00 0.00 0.00 3.41
3670 3857 4.694760 ACTGCTCCACATGCATCTAATA 57.305 40.909 0.00 0.00 39.86 0.98
3705 3895 4.946784 CAGGGTTTGCATTGTAGTACTC 57.053 45.455 0.00 0.00 0.00 2.59
4296 4754 0.951558 CAAGGTGTCCGTCCAAAAGG 59.048 55.000 0.00 0.00 0.00 3.11
4302 4760 2.432628 CGAGCAAGGTGTCCGTCC 60.433 66.667 0.00 0.00 0.00 4.79
4303 4761 2.227089 ATCCGAGCAAGGTGTCCGTC 62.227 60.000 0.00 0.00 0.00 4.79
4304 4762 2.283529 ATCCGAGCAAGGTGTCCGT 61.284 57.895 0.00 0.00 0.00 4.69
4305 4763 1.811266 CATCCGAGCAAGGTGTCCG 60.811 63.158 0.00 0.00 0.00 4.79
4321 4779 1.227497 GAGCAAGCTAGCGAGGCAT 60.227 57.895 23.61 12.75 40.15 4.40
4349 4807 3.668656 GGAAAGAAAGAAAAACGGCATCG 59.331 43.478 0.00 0.00 43.02 3.84
4350 4808 4.871513 AGGAAAGAAAGAAAAACGGCATC 58.128 39.130 0.00 0.00 0.00 3.91
4351 4809 4.937201 AGGAAAGAAAGAAAAACGGCAT 57.063 36.364 0.00 0.00 0.00 4.40
4352 4810 4.729227 AAGGAAAGAAAGAAAAACGGCA 57.271 36.364 0.00 0.00 0.00 5.69
4353 4811 5.220586 CCAAAAGGAAAGAAAGAAAAACGGC 60.221 40.000 0.00 0.00 0.00 5.68
4354 4812 5.220586 GCCAAAAGGAAAGAAAGAAAAACGG 60.221 40.000 0.00 0.00 0.00 4.44
4355 4813 5.350091 TGCCAAAAGGAAAGAAAGAAAAACG 59.650 36.000 0.00 0.00 0.00 3.60
4356 4814 6.735678 TGCCAAAAGGAAAGAAAGAAAAAC 57.264 33.333 0.00 0.00 0.00 2.43
4357 4815 7.751768 TTTGCCAAAAGGAAAGAAAGAAAAA 57.248 28.000 0.00 0.00 31.38 1.94
4358 4816 7.828717 AGATTTGCCAAAAGGAAAGAAAGAAAA 59.171 29.630 0.00 0.00 39.36 2.29
4359 4817 7.337938 AGATTTGCCAAAAGGAAAGAAAGAAA 58.662 30.769 0.00 0.00 39.36 2.52
4360 4818 6.888105 AGATTTGCCAAAAGGAAAGAAAGAA 58.112 32.000 0.00 0.00 39.36 2.52
4361 4819 6.484364 AGATTTGCCAAAAGGAAAGAAAGA 57.516 33.333 0.00 0.00 39.36 2.52
4362 4820 6.951643 CAAGATTTGCCAAAAGGAAAGAAAG 58.048 36.000 0.00 0.00 39.36 2.62
4363 4821 6.923928 CAAGATTTGCCAAAAGGAAAGAAA 57.076 33.333 0.00 0.00 39.36 2.52
4378 4836 3.763097 TCAACCGCATAGCAAGATTTG 57.237 42.857 0.00 0.00 0.00 2.32
4379 4837 4.782019 TTTCAACCGCATAGCAAGATTT 57.218 36.364 0.00 0.00 0.00 2.17
4380 4838 4.782019 TTTTCAACCGCATAGCAAGATT 57.218 36.364 0.00 0.00 0.00 2.40
4381 4839 4.782019 TTTTTCAACCGCATAGCAAGAT 57.218 36.364 0.00 0.00 0.00 2.40
4382 4840 4.671508 CGATTTTTCAACCGCATAGCAAGA 60.672 41.667 0.00 0.00 0.00 3.02
4383 4841 3.543494 CGATTTTTCAACCGCATAGCAAG 59.457 43.478 0.00 0.00 0.00 4.01
4384 4842 3.189495 TCGATTTTTCAACCGCATAGCAA 59.811 39.130 0.00 0.00 0.00 3.91
4385 4843 2.744741 TCGATTTTTCAACCGCATAGCA 59.255 40.909 0.00 0.00 0.00 3.49
4386 4844 3.398954 TCGATTTTTCAACCGCATAGC 57.601 42.857 0.00 0.00 0.00 2.97
4387 4845 5.163854 ACTCTTCGATTTTTCAACCGCATAG 60.164 40.000 0.00 0.00 0.00 2.23
4388 4846 4.693566 ACTCTTCGATTTTTCAACCGCATA 59.306 37.500 0.00 0.00 0.00 3.14
4389 4847 3.502211 ACTCTTCGATTTTTCAACCGCAT 59.498 39.130 0.00 0.00 0.00 4.73
4390 4848 2.875933 ACTCTTCGATTTTTCAACCGCA 59.124 40.909 0.00 0.00 0.00 5.69
4391 4849 3.537793 ACTCTTCGATTTTTCAACCGC 57.462 42.857 0.00 0.00 0.00 5.68
4392 4850 6.224420 ACTAACTCTTCGATTTTTCAACCG 57.776 37.500 0.00 0.00 0.00 4.44
4393 4851 9.595357 CTTTACTAACTCTTCGATTTTTCAACC 57.405 33.333 0.00 0.00 0.00 3.77
4397 4855 9.513554 CGAACTTTACTAACTCTTCGATTTTTC 57.486 33.333 0.00 0.00 33.91 2.29
4398 4856 9.038803 ACGAACTTTACTAACTCTTCGATTTTT 57.961 29.630 4.74 0.00 35.59 1.94
4399 4857 8.585189 ACGAACTTTACTAACTCTTCGATTTT 57.415 30.769 4.74 0.00 35.59 1.82
4400 4858 7.328005 GGACGAACTTTACTAACTCTTCGATTT 59.672 37.037 4.74 0.00 35.59 2.17
4401 4859 6.805760 GGACGAACTTTACTAACTCTTCGATT 59.194 38.462 4.74 0.00 35.59 3.34
4402 4860 6.072286 TGGACGAACTTTACTAACTCTTCGAT 60.072 38.462 4.74 0.00 35.59 3.59
4403 4861 5.239306 TGGACGAACTTTACTAACTCTTCGA 59.761 40.000 4.74 0.00 35.59 3.71
4404 4862 5.455392 TGGACGAACTTTACTAACTCTTCG 58.545 41.667 0.00 0.00 37.21 3.79
4405 4863 7.062022 GTCATGGACGAACTTTACTAACTCTTC 59.938 40.741 0.00 0.00 0.00 2.87
4406 4864 6.867293 GTCATGGACGAACTTTACTAACTCTT 59.133 38.462 0.00 0.00 0.00 2.85
4407 4865 6.208994 AGTCATGGACGAACTTTACTAACTCT 59.791 38.462 0.00 0.00 37.67 3.24
4408 4866 6.308282 CAGTCATGGACGAACTTTACTAACTC 59.692 42.308 0.00 0.00 37.67 3.01
4409 4867 6.157211 CAGTCATGGACGAACTTTACTAACT 58.843 40.000 0.00 0.00 37.67 2.24
4410 4868 5.163982 GCAGTCATGGACGAACTTTACTAAC 60.164 44.000 0.00 0.00 37.67 2.34
4411 4869 4.927425 GCAGTCATGGACGAACTTTACTAA 59.073 41.667 0.00 0.00 37.67 2.24
4412 4870 4.491676 GCAGTCATGGACGAACTTTACTA 58.508 43.478 0.00 0.00 37.67 1.82
4413 4871 3.326747 GCAGTCATGGACGAACTTTACT 58.673 45.455 0.00 0.00 37.67 2.24
4414 4872 2.415512 GGCAGTCATGGACGAACTTTAC 59.584 50.000 0.00 0.00 37.67 2.01
4415 4873 2.037902 TGGCAGTCATGGACGAACTTTA 59.962 45.455 0.00 0.00 37.67 1.85
4416 4874 1.202758 TGGCAGTCATGGACGAACTTT 60.203 47.619 0.00 0.00 37.67 2.66
4417 4875 0.396435 TGGCAGTCATGGACGAACTT 59.604 50.000 0.00 0.00 37.67 2.66
4418 4876 0.036952 CTGGCAGTCATGGACGAACT 60.037 55.000 6.28 0.00 37.67 3.01
4419 4877 1.021390 CCTGGCAGTCATGGACGAAC 61.021 60.000 14.43 0.00 37.67 3.95
4420 4878 1.191489 TCCTGGCAGTCATGGACGAA 61.191 55.000 14.43 0.00 37.67 3.85
4421 4879 1.607801 CTCCTGGCAGTCATGGACGA 61.608 60.000 14.43 0.00 37.67 4.20
4422 4880 1.153489 CTCCTGGCAGTCATGGACG 60.153 63.158 14.43 0.00 37.67 4.79
4423 4881 0.107945 GACTCCTGGCAGTCATGGAC 60.108 60.000 14.43 0.00 42.25 4.02
4424 4882 1.607801 CGACTCCTGGCAGTCATGGA 61.608 60.000 14.43 2.78 42.75 3.41
4425 4883 1.153489 CGACTCCTGGCAGTCATGG 60.153 63.158 14.43 0.00 42.75 3.66
4426 4884 1.812922 GCGACTCCTGGCAGTCATG 60.813 63.158 14.43 2.94 42.75 3.07
4427 4885 1.620739 ATGCGACTCCTGGCAGTCAT 61.621 55.000 14.43 4.12 42.75 3.06
4428 4886 2.230994 GATGCGACTCCTGGCAGTCA 62.231 60.000 14.43 0.00 42.75 3.41
4429 4887 1.520342 GATGCGACTCCTGGCAGTC 60.520 63.158 14.43 13.17 43.27 3.51
4430 4888 2.581354 GATGCGACTCCTGGCAGT 59.419 61.111 14.43 0.00 43.27 4.40
4431 4889 2.584418 CGATGCGACTCCTGGCAG 60.584 66.667 7.75 7.75 43.27 4.85
4432 4890 4.819761 GCGATGCGACTCCTGGCA 62.820 66.667 0.00 0.00 44.29 4.92
4433 4891 4.819761 TGCGATGCGACTCCTGGC 62.820 66.667 0.00 0.00 0.00 4.85
4434 4892 1.953138 GATGCGATGCGACTCCTGG 60.953 63.158 0.00 0.00 0.00 4.45
4435 4893 2.298629 CGATGCGATGCGACTCCTG 61.299 63.158 0.00 0.00 0.00 3.86
4436 4894 2.026734 CGATGCGATGCGACTCCT 59.973 61.111 0.00 0.00 0.00 3.69
4437 4895 3.696426 GCGATGCGATGCGACTCC 61.696 66.667 0.00 0.00 0.00 3.85
4438 4896 1.756375 AAAGCGATGCGATGCGACTC 61.756 55.000 0.00 0.00 35.87 3.36
4439 4897 0.527600 TAAAGCGATGCGATGCGACT 60.528 50.000 0.00 0.00 35.87 4.18
4440 4898 0.111530 CTAAAGCGATGCGATGCGAC 60.112 55.000 0.00 0.00 35.87 5.19
4441 4899 0.527600 ACTAAAGCGATGCGATGCGA 60.528 50.000 0.00 0.00 35.87 5.10
4442 4900 0.301687 AACTAAAGCGATGCGATGCG 59.698 50.000 0.00 0.00 35.87 4.73
4443 4901 1.734885 CAACTAAAGCGATGCGATGC 58.265 50.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.