Multiple sequence alignment - TraesCS6B01G258700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G258700 chr6B 100.000 4563 0 0 1 4563 465844447 465849009 0.000000e+00 8427
1 TraesCS6B01G258700 chr6B 88.679 848 93 3 2713 3557 431799390 431798543 0.000000e+00 1031
2 TraesCS6B01G258700 chr6B 89.421 501 37 5 3813 4302 465875826 465876321 6.490000e-173 617
3 TraesCS6B01G258700 chr6B 85.870 368 41 4 3910 4270 35711302 35710939 9.260000e-102 381
4 TraesCS6B01G258700 chr6B 80.233 430 71 5 1363 1779 431805798 431805370 1.230000e-80 311
5 TraesCS6B01G258700 chr6D 93.052 3627 158 46 188 3759 301051620 301055207 0.000000e+00 5216
6 TraesCS6B01G258700 chr6D 88.325 848 96 3 2713 3557 271086295 271085448 0.000000e+00 1014
7 TraesCS6B01G258700 chr6A 96.291 1294 45 2 2467 3759 416539536 416538245 0.000000e+00 2121
8 TraesCS6B01G258700 chr6A 93.848 1333 68 10 1146 2468 416540820 416539492 0.000000e+00 1995
9 TraesCS6B01G258700 chr6A 87.913 968 69 19 216 1153 416541793 416540844 0.000000e+00 1096
10 TraesCS6B01G258700 chr6A 88.090 848 98 2 2713 3557 384921533 384922380 0.000000e+00 1003
11 TraesCS6B01G258700 chr6A 81.007 437 69 5 1356 1779 384915835 384916270 7.310000e-88 335
12 TraesCS6B01G258700 chr6A 95.722 187 6 2 1 186 531714044 531714229 2.670000e-77 300
13 TraesCS6B01G258700 chr3A 86.815 766 69 14 3818 4561 691320841 691321596 0.000000e+00 826
14 TraesCS6B01G258700 chr3A 89.167 480 33 7 3813 4281 691326593 691327064 8.510000e-162 580
15 TraesCS6B01G258700 chr3A 88.125 480 38 7 3813 4281 408191459 408190988 1.860000e-153 553
16 TraesCS6B01G258700 chr3A 85.455 385 50 6 4159 4540 408196931 408196550 3.310000e-106 396
17 TraesCS6B01G258700 chr1A 86.292 766 73 15 3818 4561 11223530 11222775 0.000000e+00 804
18 TraesCS6B01G258700 chr1A 88.119 505 39 10 3813 4305 11209072 11208577 8.510000e-162 580
19 TraesCS6B01G258700 chr1D 86.454 657 67 13 3817 4459 482987856 482987208 0.000000e+00 701
20 TraesCS6B01G258700 chr1D 88.757 507 40 9 3813 4306 482980723 482980221 5.050000e-169 604
21 TraesCS6B01G258700 chr2A 86.700 594 66 6 3950 4535 25362237 25361649 0.000000e+00 647
22 TraesCS6B01G258700 chr7D 88.934 497 39 7 3818 4302 539212265 539211773 2.350000e-167 599
23 TraesCS6B01G258700 chr5A 76.254 678 143 18 2745 3413 572697723 572697055 1.220000e-90 344
24 TraesCS6B01G258700 chr5A 95.722 187 7 1 4 189 31272406 31272220 2.670000e-77 300
25 TraesCS6B01G258700 chr5D 75.806 682 145 20 2742 3413 453421888 453422559 1.220000e-85 327
26 TraesCS6B01G258700 chr5B 75.419 716 150 22 2711 3413 553945678 553946380 1.580000e-84 324
27 TraesCS6B01G258700 chr4A 97.326 187 3 2 1 186 667707201 667707016 2.650000e-82 316
28 TraesCS6B01G258700 chr7B 96.277 188 5 2 1 186 436766265 436766078 1.590000e-79 307
29 TraesCS6B01G258700 chr7B 96.257 187 6 1 1 186 74205447 74205633 5.740000e-79 305
30 TraesCS6B01G258700 chr7B 95.722 187 6 2 4 189 184247318 184247133 2.670000e-77 300
31 TraesCS6B01G258700 chr7B 96.196 184 6 1 1 184 635941342 635941160 2.670000e-77 300
32 TraesCS6B01G258700 chr7B 95.722 187 4 4 1 186 115370585 115370768 9.600000e-77 298
33 TraesCS6B01G258700 chr3B 96.721 183 6 0 4 186 695554534 695554352 5.740000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G258700 chr6B 465844447 465849009 4562 False 8427.000000 8427 100.000 1 4563 1 chr6B.!!$F1 4562
1 TraesCS6B01G258700 chr6B 431798543 431799390 847 True 1031.000000 1031 88.679 2713 3557 1 chr6B.!!$R2 844
2 TraesCS6B01G258700 chr6D 301051620 301055207 3587 False 5216.000000 5216 93.052 188 3759 1 chr6D.!!$F1 3571
3 TraesCS6B01G258700 chr6D 271085448 271086295 847 True 1014.000000 1014 88.325 2713 3557 1 chr6D.!!$R1 844
4 TraesCS6B01G258700 chr6A 416538245 416541793 3548 True 1737.333333 2121 92.684 216 3759 3 chr6A.!!$R1 3543
5 TraesCS6B01G258700 chr6A 384921533 384922380 847 False 1003.000000 1003 88.090 2713 3557 1 chr6A.!!$F2 844
6 TraesCS6B01G258700 chr3A 691320841 691321596 755 False 826.000000 826 86.815 3818 4561 1 chr3A.!!$F1 743
7 TraesCS6B01G258700 chr1A 11222775 11223530 755 True 804.000000 804 86.292 3818 4561 1 chr1A.!!$R2 743
8 TraesCS6B01G258700 chr1D 482987208 482987856 648 True 701.000000 701 86.454 3817 4459 1 chr1D.!!$R2 642
9 TraesCS6B01G258700 chr1D 482980221 482980723 502 True 604.000000 604 88.757 3813 4306 1 chr1D.!!$R1 493
10 TraesCS6B01G258700 chr2A 25361649 25362237 588 True 647.000000 647 86.700 3950 4535 1 chr2A.!!$R1 585
11 TraesCS6B01G258700 chr5A 572697055 572697723 668 True 344.000000 344 76.254 2745 3413 1 chr5A.!!$R2 668
12 TraesCS6B01G258700 chr5D 453421888 453422559 671 False 327.000000 327 75.806 2742 3413 1 chr5D.!!$F1 671
13 TraesCS6B01G258700 chr5B 553945678 553946380 702 False 324.000000 324 75.419 2711 3413 1 chr5B.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.037590 TTGGCACGCCTTACAGGAAT 59.962 50.0 9.92 0.0 37.67 3.01 F
1595 1666 0.030773 TCATGCTCTCCGTCATACGC 59.969 55.0 0.00 0.0 40.91 4.42 F
1908 1983 0.664767 GGATCGTCGTGCCTATGCTC 60.665 60.0 0.00 0.0 38.71 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 1910 0.438830 CACGGTTACAGAAGCTTCGC 59.561 55.000 20.43 9.55 0.0 4.70 R
2518 2599 2.520904 GCTCGTCGCCAGATTCTGC 61.521 63.158 8.23 3.45 0.0 4.26 R
3766 3855 0.108138 GACAACATCACCCTCCGAGG 60.108 60.000 7.56 7.56 34.3 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.671251 TTTTTGGCACGCCTTACAGG 59.329 50.000 9.92 0.00 38.80 4.00
34 35 0.179015 TTTTGGCACGCCTTACAGGA 60.179 50.000 9.92 0.00 37.67 3.86
35 36 0.179015 TTTGGCACGCCTTACAGGAA 60.179 50.000 9.92 0.00 37.67 3.36
36 37 0.037590 TTGGCACGCCTTACAGGAAT 59.962 50.000 9.92 0.00 37.67 3.01
37 38 0.676466 TGGCACGCCTTACAGGAATG 60.676 55.000 9.92 0.00 37.67 2.67
38 39 0.676782 GGCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
39 40 0.447801 GCACGCCTTACAGGAATGTG 59.552 55.000 0.00 0.46 37.67 3.21
40 41 1.943968 GCACGCCTTACAGGAATGTGA 60.944 52.381 12.03 0.00 37.67 3.58
41 42 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
42 43 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
43 44 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
44 45 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
45 46 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
46 47 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
47 48 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
48 49 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
49 50 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
50 51 7.229306 GCCTTACAGGAATGTGATTTCATGATA 59.771 37.037 0.00 0.00 39.18 2.15
51 52 9.123902 CCTTACAGGAATGTGATTTCATGATAA 57.876 33.333 0.00 0.00 39.18 1.75
62 63 8.937884 TGTGATTTCATGATAAATTTTTGCAGG 58.062 29.630 0.00 0.00 0.00 4.85
63 64 7.906527 GTGATTTCATGATAAATTTTTGCAGGC 59.093 33.333 0.00 0.00 0.00 4.85
64 65 7.606839 TGATTTCATGATAAATTTTTGCAGGCA 59.393 29.630 0.00 0.00 0.00 4.75
65 66 6.724694 TTCATGATAAATTTTTGCAGGCAC 57.275 33.333 0.00 0.00 0.00 5.01
66 67 6.040209 TCATGATAAATTTTTGCAGGCACT 57.960 33.333 0.00 0.00 43.88 4.40
67 68 6.465948 TCATGATAAATTTTTGCAGGCACTT 58.534 32.000 0.00 0.00 34.60 3.16
68 69 7.609960 TCATGATAAATTTTTGCAGGCACTTA 58.390 30.769 0.00 0.00 34.60 2.24
69 70 7.760794 TCATGATAAATTTTTGCAGGCACTTAG 59.239 33.333 0.00 0.00 34.60 2.18
70 71 7.225784 TGATAAATTTTTGCAGGCACTTAGA 57.774 32.000 0.00 0.00 34.60 2.10
71 72 7.665690 TGATAAATTTTTGCAGGCACTTAGAA 58.334 30.769 0.00 0.00 34.60 2.10
72 73 7.598493 TGATAAATTTTTGCAGGCACTTAGAAC 59.402 33.333 0.00 0.00 34.60 3.01
73 74 5.535753 AATTTTTGCAGGCACTTAGAACT 57.464 34.783 0.00 0.00 34.60 3.01
74 75 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
75 76 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
76 77 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
77 78 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
78 79 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
79 80 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
80 81 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
81 82 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
82 83 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
83 84 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
84 85 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
85 86 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
86 87 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
87 88 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
88 89 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
89 90 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
90 91 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
150 151 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
151 152 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
152 153 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
153 154 2.418628 CGATTTTACTGTTCATGCGGGT 59.581 45.455 0.00 0.00 0.00 5.28
154 155 3.727673 CGATTTTACTGTTCATGCGGGTG 60.728 47.826 0.00 0.00 0.00 4.61
155 156 0.878416 TTTACTGTTCATGCGGGTGC 59.122 50.000 0.00 0.00 43.20 5.01
165 166 3.647824 GCGGGTGCATATGAGCTC 58.352 61.111 6.82 6.82 42.15 4.09
166 167 2.313172 GCGGGTGCATATGAGCTCG 61.313 63.158 9.64 10.64 42.15 5.03
167 168 1.665916 CGGGTGCATATGAGCTCGG 60.666 63.158 9.64 0.00 34.99 4.63
168 169 1.302033 GGGTGCATATGAGCTCGGG 60.302 63.158 9.64 0.00 34.99 5.14
169 170 1.447643 GGTGCATATGAGCTCGGGT 59.552 57.895 9.64 0.00 34.99 5.28
170 171 0.882042 GGTGCATATGAGCTCGGGTG 60.882 60.000 9.64 8.35 34.99 4.61
171 172 1.227645 TGCATATGAGCTCGGGTGC 60.228 57.895 22.57 22.57 34.99 5.01
172 173 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
173 174 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
174 175 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
175 176 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
176 177 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
177 178 0.254178 ATGAGCTCGGGTGCAGAATT 59.746 50.000 9.64 0.00 34.99 2.17
178 179 0.674581 TGAGCTCGGGTGCAGAATTG 60.675 55.000 9.64 0.00 34.99 2.32
179 180 0.391661 GAGCTCGGGTGCAGAATTGA 60.392 55.000 0.00 0.00 34.99 2.57
180 181 0.674895 AGCTCGGGTGCAGAATTGAC 60.675 55.000 0.00 0.00 34.99 3.18
181 182 0.674895 GCTCGGGTGCAGAATTGACT 60.675 55.000 0.00 0.00 0.00 3.41
182 183 1.813513 CTCGGGTGCAGAATTGACTT 58.186 50.000 0.00 0.00 0.00 3.01
183 184 2.154462 CTCGGGTGCAGAATTGACTTT 58.846 47.619 0.00 0.00 0.00 2.66
184 185 2.554032 CTCGGGTGCAGAATTGACTTTT 59.446 45.455 0.00 0.00 0.00 2.27
185 186 2.552315 TCGGGTGCAGAATTGACTTTTC 59.448 45.455 0.00 0.00 0.00 2.29
186 187 2.293122 CGGGTGCAGAATTGACTTTTCA 59.707 45.455 0.00 0.00 0.00 2.69
209 210 9.436957 TTCAGATAATCAGTCTTTTAGGTTCAC 57.563 33.333 0.00 0.00 0.00 3.18
211 212 9.219603 CAGATAATCAGTCTTTTAGGTTCACAA 57.780 33.333 0.00 0.00 0.00 3.33
227 228 3.286353 TCACAAATGAACAGAGCACCAA 58.714 40.909 0.00 0.00 0.00 3.67
249 250 4.900635 TTCTTGAGTTGTTCTGCTTTCC 57.099 40.909 0.00 0.00 0.00 3.13
258 259 3.482436 TGTTCTGCTTTCCGTGGTTTAT 58.518 40.909 0.00 0.00 0.00 1.40
277 278 6.302615 GTTTATTGCGCATCATAGTGATCTC 58.697 40.000 12.75 0.00 34.28 2.75
396 397 5.828328 CCCATGATGATGATATCCAATCCAG 59.172 44.000 0.00 0.00 0.00 3.86
406 407 6.724351 TGATATCCAATCCAGTATCATTGGG 58.276 40.000 10.14 0.00 46.39 4.12
407 408 6.504989 TGATATCCAATCCAGTATCATTGGGA 59.495 38.462 10.14 0.00 46.39 4.37
408 409 5.668135 ATCCAATCCAGTATCATTGGGAA 57.332 39.130 10.14 0.00 46.39 3.97
409 410 5.668135 TCCAATCCAGTATCATTGGGAAT 57.332 39.130 10.14 0.00 46.39 3.01
410 411 5.387788 TCCAATCCAGTATCATTGGGAATG 58.612 41.667 10.14 0.00 46.39 2.67
411 412 4.525487 CCAATCCAGTATCATTGGGAATGG 59.475 45.833 0.00 0.00 43.77 3.16
429 430 0.890996 GGGAAGCATCATTAGGGCCG 60.891 60.000 0.00 0.00 0.00 6.13
435 436 1.525995 ATCATTAGGGCCGGTTGCG 60.526 57.895 1.90 0.00 42.61 4.85
451 452 4.858692 CGGTTGCGATTCATCAAAGAAATT 59.141 37.500 0.00 0.00 0.00 1.82
481 482 9.914834 ATCATACTATATTCTGTCCTAGACTCC 57.085 37.037 0.00 0.00 34.43 3.85
482 483 9.118367 TCATACTATATTCTGTCCTAGACTCCT 57.882 37.037 0.00 0.00 34.43 3.69
486 487 8.380099 ACTATATTCTGTCCTAGACTCCTAGTG 58.620 40.741 0.00 0.00 40.57 2.74
507 508 3.007635 GGAGGTAAAATGTCCACCTTCG 58.992 50.000 0.00 0.00 42.78 3.79
512 513 5.046159 AGGTAAAATGTCCACCTTCGTATCA 60.046 40.000 0.00 0.00 39.73 2.15
517 518 2.230508 TGTCCACCTTCGTATCAGTCAC 59.769 50.000 0.00 0.00 0.00 3.67
527 539 6.748198 CCTTCGTATCAGTCACTAAAACTCTC 59.252 42.308 0.00 0.00 0.00 3.20
537 549 4.094212 CACTAAAACTCTCTACGCGGTAC 58.906 47.826 12.47 0.00 0.00 3.34
635 655 2.376695 ATGAATGGCCAGGGATTCAG 57.623 50.000 20.88 0.00 40.88 3.02
637 657 0.468771 GAATGGCCAGGGATTCAGGG 60.469 60.000 13.05 0.00 0.00 4.45
654 674 3.054361 TCAGGGATTCTAGGTTTTGAGCC 60.054 47.826 0.00 0.00 0.00 4.70
664 684 6.721318 TCTAGGTTTTGAGCCTAAACATCAT 58.279 36.000 11.80 1.98 38.05 2.45
665 685 7.175104 TCTAGGTTTTGAGCCTAAACATCATT 58.825 34.615 11.80 0.00 38.05 2.57
668 688 6.071728 AGGTTTTGAGCCTAAACATCATTGAG 60.072 38.462 11.80 0.00 37.25 3.02
673 693 5.649395 TGAGCCTAAACATCATTGAGAAAGG 59.351 40.000 0.00 0.00 0.00 3.11
679 699 8.526147 CCTAAACATCATTGAGAAAGGAAACAT 58.474 33.333 0.00 0.00 0.00 2.71
699 719 2.401583 TAAAGGAGCGTCACATGCAT 57.598 45.000 0.00 0.00 31.07 3.96
707 727 3.009026 AGCGTCACATGCATGTTGATAA 58.991 40.909 29.48 10.15 39.39 1.75
721 741 6.722301 CATGTTGATAACCTGATCACATGTC 58.278 40.000 0.00 0.00 38.64 3.06
722 742 4.869861 TGTTGATAACCTGATCACATGTCG 59.130 41.667 0.00 0.00 35.56 4.35
740 760 1.227853 GTCGGTGTTTGCCTGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
745 765 1.818674 GGTGTTTGCCTGTCCTAATGG 59.181 52.381 0.00 0.00 0.00 3.16
746 766 1.818674 GTGTTTGCCTGTCCTAATGGG 59.181 52.381 0.00 0.00 0.00 4.00
781 802 1.561643 TTTCCTCTGGTCGATCTGCT 58.438 50.000 0.00 0.00 0.00 4.24
784 805 2.735151 TCCTCTGGTCGATCTGCTTTA 58.265 47.619 0.00 0.00 0.00 1.85
786 807 3.131223 TCCTCTGGTCGATCTGCTTTAAG 59.869 47.826 0.00 0.00 0.00 1.85
787 808 3.118956 CCTCTGGTCGATCTGCTTTAAGT 60.119 47.826 0.00 0.00 0.00 2.24
788 809 4.098044 CCTCTGGTCGATCTGCTTTAAGTA 59.902 45.833 0.00 0.00 0.00 2.24
789 810 4.995124 TCTGGTCGATCTGCTTTAAGTAC 58.005 43.478 0.00 0.00 0.00 2.73
790 811 4.461431 TCTGGTCGATCTGCTTTAAGTACA 59.539 41.667 0.00 0.00 0.00 2.90
802 827 7.439955 TCTGCTTTAAGTACAAAATCACGAGAA 59.560 33.333 0.00 0.00 0.00 2.87
850 875 1.926561 TCGATTGATTCTCGTGGCTG 58.073 50.000 0.00 0.00 37.40 4.85
856 881 1.078848 ATTCTCGTGGCTGAGCACC 60.079 57.895 6.82 0.00 35.90 5.01
955 987 7.073457 TGCTTATAAGTTATCTACCCATGCA 57.927 36.000 13.91 0.00 0.00 3.96
957 989 7.607607 TGCTTATAAGTTATCTACCCATGCATG 59.392 37.037 20.19 20.19 0.00 4.06
975 1007 7.538334 CCATGCATGTATACGTGATAATTTTGG 59.462 37.037 25.93 15.93 34.90 3.28
1039 1071 1.122019 AAACGTCAGGTGAGCCTCCT 61.122 55.000 0.00 0.00 44.97 3.69
1057 1089 3.223435 TCCTCTCGACCAATATCACCTC 58.777 50.000 0.00 0.00 0.00 3.85
1269 1340 1.371183 CTGGAGAGCCCGTCAACAA 59.629 57.895 0.00 0.00 37.93 2.83
1289 1360 0.662619 CGAGCAAGAACCACAGCAAA 59.337 50.000 0.00 0.00 0.00 3.68
1502 1573 1.682257 GTGCCTGCTCTCCCTCTTT 59.318 57.895 0.00 0.00 0.00 2.52
1595 1666 0.030773 TCATGCTCTCCGTCATACGC 59.969 55.000 0.00 0.00 40.91 4.42
1685 1756 2.351276 CGGGTGTTTGGGAGAGGG 59.649 66.667 0.00 0.00 0.00 4.30
1767 1838 4.393155 TCATCACCGCGCTGCCTT 62.393 61.111 5.56 0.00 0.00 4.35
1838 1910 4.753610 TCTCAAGAACTGAAATGCTCTGTG 59.246 41.667 0.00 0.00 36.43 3.66
1840 1912 1.802960 AGAACTGAAATGCTCTGTGCG 59.197 47.619 0.00 0.00 46.63 5.34
1843 1915 1.802960 ACTGAAATGCTCTGTGCGAAG 59.197 47.619 0.00 0.00 46.63 3.79
1865 1937 3.556775 GCTTCTGTAACCGTGTGTGTTTA 59.443 43.478 0.00 0.00 0.00 2.01
1868 1940 5.204409 TCTGTAACCGTGTGTGTTTATCT 57.796 39.130 0.00 0.00 0.00 1.98
1871 1946 5.117584 TGTAACCGTGTGTGTTTATCTGTT 58.882 37.500 0.00 0.00 0.00 3.16
1908 1983 0.664767 GGATCGTCGTGCCTATGCTC 60.665 60.000 0.00 0.00 38.71 4.26
2169 2244 2.825836 GCGTGCAATCTGGAGGGG 60.826 66.667 0.00 0.00 0.00 4.79
2184 2259 3.717294 GGGCCCATGTGTCGGACT 61.717 66.667 19.95 0.00 0.00 3.85
2202 2277 3.686726 GGACTGAGTTCTTCGATTGCAAT 59.313 43.478 12.83 12.83 0.00 3.56
2205 2280 5.482908 ACTGAGTTCTTCGATTGCAATACT 58.517 37.500 12.97 10.94 0.00 2.12
2208 2283 5.120674 TGAGTTCTTCGATTGCAATACTGTG 59.879 40.000 12.97 2.48 0.00 3.66
2247 2322 1.281899 GGTACGAGCTGAGCAACATC 58.718 55.000 7.39 0.00 0.00 3.06
2417 2492 4.365899 CATGCATGCATGTTAACTCTGT 57.634 40.909 40.30 13.68 46.20 3.41
2420 2495 3.189080 TGCATGCATGTTAACTCTGTGTC 59.811 43.478 26.79 6.83 0.00 3.67
2422 2497 4.715896 CATGCATGTTAACTCTGTGTCAC 58.284 43.478 18.91 0.00 0.00 3.67
2423 2498 4.071961 TGCATGTTAACTCTGTGTCACT 57.928 40.909 7.22 0.00 0.00 3.41
2425 2500 5.606505 TGCATGTTAACTCTGTGTCACTTA 58.393 37.500 7.22 0.00 0.00 2.24
2426 2501 5.465390 TGCATGTTAACTCTGTGTCACTTAC 59.535 40.000 7.22 0.00 0.00 2.34
2427 2502 5.465390 GCATGTTAACTCTGTGTCACTTACA 59.535 40.000 7.22 0.00 35.06 2.41
2429 2504 7.330946 GCATGTTAACTCTGTGTCACTTACATA 59.669 37.037 7.22 0.00 41.10 2.29
2430 2505 9.371136 CATGTTAACTCTGTGTCACTTACATAT 57.629 33.333 7.22 0.00 41.10 1.78
2432 2507 9.203421 TGTTAACTCTGTGTCACTTACATATTG 57.797 33.333 7.22 0.00 41.10 1.90
2433 2508 8.656849 GTTAACTCTGTGTCACTTACATATTGG 58.343 37.037 4.27 0.00 41.10 3.16
2434 2509 6.605471 ACTCTGTGTCACTTACATATTGGA 57.395 37.500 4.27 0.00 41.10 3.53
2435 2510 6.398918 ACTCTGTGTCACTTACATATTGGAC 58.601 40.000 4.27 0.00 41.10 4.02
2436 2511 6.014584 ACTCTGTGTCACTTACATATTGGACA 60.015 38.462 4.27 0.00 41.10 4.02
2438 2513 5.796350 GTGTCACTTACATATTGGACACC 57.204 43.478 10.68 0.00 45.62 4.16
2441 2516 6.430000 GTGTCACTTACATATTGGACACCTTT 59.570 38.462 10.68 0.00 45.62 3.11
2442 2517 6.653320 TGTCACTTACATATTGGACACCTTTC 59.347 38.462 0.00 0.00 31.43 2.62
2443 2518 5.872617 TCACTTACATATTGGACACCTTTCG 59.127 40.000 0.00 0.00 0.00 3.46
2444 2519 5.872617 CACTTACATATTGGACACCTTTCGA 59.127 40.000 0.00 0.00 0.00 3.71
2445 2520 6.370442 CACTTACATATTGGACACCTTTCGAA 59.630 38.462 0.00 0.00 0.00 3.71
2447 2522 8.262227 ACTTACATATTGGACACCTTTCGAATA 58.738 33.333 0.00 0.00 32.67 1.75
2448 2523 9.104965 CTTACATATTGGACACCTTTCGAATAA 57.895 33.333 0.00 0.00 32.12 1.40
2449 2524 7.316544 ACATATTGGACACCTTTCGAATAAC 57.683 36.000 0.00 0.00 32.12 1.89
2450 2525 7.110155 ACATATTGGACACCTTTCGAATAACT 58.890 34.615 0.00 0.00 32.12 2.24
2452 2527 9.104965 CATATTGGACACCTTTCGAATAACTAA 57.895 33.333 0.00 0.00 32.12 2.24
2453 2528 9.847224 ATATTGGACACCTTTCGAATAACTAAT 57.153 29.630 0.00 1.31 32.12 1.73
2518 2599 4.871933 AAAATGTTTCAGTTGCCTAGGG 57.128 40.909 11.72 0.00 0.00 3.53
2653 2736 4.450053 CTTCCTTCCACTCCATCAATCTC 58.550 47.826 0.00 0.00 0.00 2.75
2656 2739 0.103026 TCCACTCCATCAATCTCGCG 59.897 55.000 0.00 0.00 0.00 5.87
2657 2740 0.103026 CCACTCCATCAATCTCGCGA 59.897 55.000 9.26 9.26 0.00 5.87
2719 2802 9.944376 TTTCTAGTATATTTGTCTTTGCAGTCT 57.056 29.630 0.00 0.00 0.00 3.24
3354 3437 1.966451 GGCACAGGTTCCGGTTCTG 60.966 63.158 15.88 15.88 34.91 3.02
3602 3691 5.745312 TCTTGAGGAGATAGCTGAAAACA 57.255 39.130 0.00 0.00 0.00 2.83
3608 3697 7.170965 TGAGGAGATAGCTGAAAACATTTTCT 58.829 34.615 16.01 1.73 45.14 2.52
3634 3723 2.401351 GGTCGATTGTATAGGAACCGC 58.599 52.381 0.00 0.00 0.00 5.68
3662 3751 2.612221 GGAAACGGACGGACAGATCTTT 60.612 50.000 0.00 0.00 0.00 2.52
3686 3775 4.100498 TCTTCTACCTCCAAACGTTGACTT 59.900 41.667 0.00 0.00 0.00 3.01
3742 3831 1.403647 CGCACGAATCTGGTGTCCTTA 60.404 52.381 0.00 0.00 37.70 2.69
3747 3836 2.666508 CGAATCTGGTGTCCTTAACGTG 59.333 50.000 0.00 0.00 0.00 4.49
3749 3838 4.616604 CGAATCTGGTGTCCTTAACGTGTA 60.617 45.833 0.00 0.00 0.00 2.90
3750 3839 5.416271 AATCTGGTGTCCTTAACGTGTAT 57.584 39.130 0.00 0.00 0.00 2.29
3754 3843 2.419159 GGTGTCCTTAACGTGTATCCCC 60.419 54.545 0.00 0.00 0.00 4.81
3755 3844 1.832998 TGTCCTTAACGTGTATCCCCC 59.167 52.381 0.00 0.00 0.00 5.40
3756 3845 2.113807 GTCCTTAACGTGTATCCCCCT 58.886 52.381 0.00 0.00 0.00 4.79
3757 3846 2.502947 GTCCTTAACGTGTATCCCCCTT 59.497 50.000 0.00 0.00 0.00 3.95
3758 3847 2.502538 TCCTTAACGTGTATCCCCCTTG 59.497 50.000 0.00 0.00 0.00 3.61
3759 3848 2.285977 CTTAACGTGTATCCCCCTTGC 58.714 52.381 0.00 0.00 0.00 4.01
3760 3849 1.277579 TAACGTGTATCCCCCTTGCA 58.722 50.000 0.00 0.00 0.00 4.08
3761 3850 0.035439 AACGTGTATCCCCCTTGCAG 60.035 55.000 0.00 0.00 0.00 4.41
3762 3851 1.819632 CGTGTATCCCCCTTGCAGC 60.820 63.158 0.00 0.00 0.00 5.25
3763 3852 1.819632 GTGTATCCCCCTTGCAGCG 60.820 63.158 0.00 0.00 0.00 5.18
3764 3853 2.902343 GTATCCCCCTTGCAGCGC 60.902 66.667 0.00 0.00 0.00 5.92
3765 3854 3.089874 TATCCCCCTTGCAGCGCT 61.090 61.111 2.64 2.64 0.00 5.92
3766 3855 3.106986 TATCCCCCTTGCAGCGCTC 62.107 63.158 7.13 2.98 0.00 5.03
3772 3861 4.441695 CTTGCAGCGCTCCTCGGA 62.442 66.667 7.13 0.00 38.94 4.55
3773 3862 4.441695 TTGCAGCGCTCCTCGGAG 62.442 66.667 7.13 8.62 44.56 4.63
3779 3868 2.835431 CGCTCCTCGGAGGGTGAT 60.835 66.667 23.39 0.00 46.08 3.06
3780 3869 2.818132 GCTCCTCGGAGGGTGATG 59.182 66.667 23.39 10.07 42.19 3.07
3781 3870 2.060980 GCTCCTCGGAGGGTGATGT 61.061 63.158 23.39 0.00 42.19 3.06
3782 3871 1.617947 GCTCCTCGGAGGGTGATGTT 61.618 60.000 23.39 0.00 42.19 2.71
3783 3872 0.176680 CTCCTCGGAGGGTGATGTTG 59.823 60.000 23.39 0.00 38.51 3.33
3784 3873 0.544357 TCCTCGGAGGGTGATGTTGT 60.544 55.000 23.39 0.00 35.59 3.32
3785 3874 0.108138 CCTCGGAGGGTGATGTTGTC 60.108 60.000 16.59 0.00 0.00 3.18
3786 3875 0.898320 CTCGGAGGGTGATGTTGTCT 59.102 55.000 0.00 0.00 0.00 3.41
3787 3876 0.895530 TCGGAGGGTGATGTTGTCTC 59.104 55.000 0.00 0.00 0.00 3.36
3788 3877 0.898320 CGGAGGGTGATGTTGTCTCT 59.102 55.000 0.00 0.00 0.00 3.10
3789 3878 1.134965 CGGAGGGTGATGTTGTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
3790 3879 1.902508 GGAGGGTGATGTTGTCTCTCA 59.097 52.381 0.00 0.00 0.00 3.27
3791 3880 2.503356 GGAGGGTGATGTTGTCTCTCAT 59.497 50.000 0.00 0.00 0.00 2.90
3792 3881 3.054802 GGAGGGTGATGTTGTCTCTCATT 60.055 47.826 0.00 0.00 0.00 2.57
3793 3882 4.566488 GGAGGGTGATGTTGTCTCTCATTT 60.566 45.833 0.00 0.00 0.00 2.32
3794 3883 4.583871 AGGGTGATGTTGTCTCTCATTTC 58.416 43.478 0.00 0.00 0.00 2.17
3795 3884 3.691609 GGGTGATGTTGTCTCTCATTTCC 59.308 47.826 0.00 0.00 0.00 3.13
3796 3885 3.691609 GGTGATGTTGTCTCTCATTTCCC 59.308 47.826 0.00 0.00 0.00 3.97
3797 3886 4.566488 GGTGATGTTGTCTCTCATTTCCCT 60.566 45.833 0.00 0.00 0.00 4.20
3798 3887 5.006386 GTGATGTTGTCTCTCATTTCCCTT 58.994 41.667 0.00 0.00 0.00 3.95
3799 3888 5.005740 TGATGTTGTCTCTCATTTCCCTTG 58.994 41.667 0.00 0.00 0.00 3.61
3800 3889 4.437682 TGTTGTCTCTCATTTCCCTTGT 57.562 40.909 0.00 0.00 0.00 3.16
3801 3890 4.792068 TGTTGTCTCTCATTTCCCTTGTT 58.208 39.130 0.00 0.00 0.00 2.83
3802 3891 5.200483 TGTTGTCTCTCATTTCCCTTGTTT 58.800 37.500 0.00 0.00 0.00 2.83
3803 3892 5.299279 TGTTGTCTCTCATTTCCCTTGTTTC 59.701 40.000 0.00 0.00 0.00 2.78
3804 3893 5.310409 TGTCTCTCATTTCCCTTGTTTCT 57.690 39.130 0.00 0.00 0.00 2.52
3805 3894 5.694995 TGTCTCTCATTTCCCTTGTTTCTT 58.305 37.500 0.00 0.00 0.00 2.52
3806 3895 6.129179 TGTCTCTCATTTCCCTTGTTTCTTT 58.871 36.000 0.00 0.00 0.00 2.52
3807 3896 6.607198 TGTCTCTCATTTCCCTTGTTTCTTTT 59.393 34.615 0.00 0.00 0.00 2.27
3808 3897 6.920210 GTCTCTCATTTCCCTTGTTTCTTTTG 59.080 38.462 0.00 0.00 0.00 2.44
3809 3898 5.600696 TCTCATTTCCCTTGTTTCTTTTGC 58.399 37.500 0.00 0.00 0.00 3.68
3810 3899 4.367450 TCATTTCCCTTGTTTCTTTTGCG 58.633 39.130 0.00 0.00 0.00 4.85
3811 3900 4.098654 TCATTTCCCTTGTTTCTTTTGCGA 59.901 37.500 0.00 0.00 0.00 5.10
3874 3968 3.767309 TTACCATTAAAGTGGGCCCAT 57.233 42.857 31.45 15.75 43.77 4.00
3888 3982 3.458857 TGGGCCCATTAGTTAATTACGGA 59.541 43.478 24.45 0.00 0.00 4.69
3907 4001 6.110543 ACGGAATTAACACTAATTAACGGC 57.889 37.500 13.78 0.00 39.66 5.68
3933 4027 1.612950 ACAATTTGCGCCTGTGATTGA 59.387 42.857 18.57 0.00 33.24 2.57
3934 4028 2.231964 ACAATTTGCGCCTGTGATTGAT 59.768 40.909 18.57 6.50 33.24 2.57
3937 4031 0.322366 TTGCGCCTGTGATTGATGGA 60.322 50.000 4.18 0.00 0.00 3.41
4016 4110 3.997021 GCATCCCTGTACCTATTTGATCG 59.003 47.826 0.00 0.00 0.00 3.69
4017 4111 4.503296 GCATCCCTGTACCTATTTGATCGT 60.503 45.833 0.00 0.00 0.00 3.73
4018 4112 5.611374 CATCCCTGTACCTATTTGATCGTT 58.389 41.667 0.00 0.00 0.00 3.85
4019 4113 5.272283 TCCCTGTACCTATTTGATCGTTC 57.728 43.478 0.00 0.00 0.00 3.95
4022 4116 4.503007 CCTGTACCTATTTGATCGTTCGTG 59.497 45.833 0.00 0.00 0.00 4.35
4029 4123 3.490800 TTTGATCGTTCGTGGTATCGA 57.509 42.857 0.00 0.00 38.08 3.59
4039 4133 6.149973 TCGTTCGTGGTATCGATTAGGATAAT 59.850 38.462 1.71 0.00 39.57 1.28
4046 4140 6.666113 TGGTATCGATTAGGATAATAGTGCCA 59.334 38.462 1.71 0.00 31.09 4.92
4049 4143 7.667575 ATCGATTAGGATAATAGTGCCATCT 57.332 36.000 0.00 0.00 0.00 2.90
4059 4153 8.230486 GGATAATAGTGCCATCTGAAATTTACG 58.770 37.037 0.00 0.00 0.00 3.18
4146 4246 2.026822 ACCTGCTATGCTGCTACAGTTT 60.027 45.455 0.00 0.00 33.43 2.66
4164 4264 5.221461 ACAGTTTGTCATCGGACTCTACTTT 60.221 40.000 0.00 0.00 44.61 2.66
4178 4278 3.427573 TCTACTTTCTCCACCGTGATGA 58.572 45.455 0.00 0.00 0.00 2.92
4191 4291 1.067846 CGTGATGACCTCTCCAAACGA 60.068 52.381 0.00 0.00 32.77 3.85
4239 4339 9.299963 CACTAATTTCCGCATCAAATCAAATAA 57.700 29.630 0.00 0.00 0.00 1.40
4281 4381 5.640783 TCAGATCCGATTAGCAATTGCATAG 59.359 40.000 30.89 16.60 45.16 2.23
4282 4382 4.394300 AGATCCGATTAGCAATTGCATAGC 59.606 41.667 30.89 19.25 45.16 2.97
4285 4385 4.002982 CCGATTAGCAATTGCATAGCCTA 58.997 43.478 30.89 11.62 45.16 3.93
4312 4413 9.461312 AGCAATTAGTCTAACATTTGGTATCAA 57.539 29.630 7.15 0.00 0.00 2.57
4333 4435 1.202533 AGCCGGTTGGATCTAATCACG 60.203 52.381 1.90 4.99 37.49 4.35
4370 4473 9.506018 TGAGAAAAATTGACAGTAGATCAATCA 57.494 29.630 0.00 0.00 44.24 2.57
4387 4490 4.627035 TCAATCAGTGTCATAGAACTTGCG 59.373 41.667 0.00 0.00 0.00 4.85
4414 4517 2.658373 TCACGTAATTAAGCCTCGCA 57.342 45.000 0.00 0.00 0.00 5.10
4459 4562 4.821589 CGCCGTCCTCCTCAAGGC 62.822 72.222 0.00 0.00 45.78 4.35
4466 4569 0.397114 TCCTCCTCAAGGCGATGCTA 60.397 55.000 0.00 0.00 45.78 3.49
4491 4594 1.517361 CTGAGCACATCCGGCTGTA 59.483 57.895 11.23 0.00 42.78 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.937884 CCTGCAAAAATTTATCATGAAATCACA 58.062 29.630 0.00 0.00 0.00 3.58
37 38 7.906527 GCCTGCAAAAATTTATCATGAAATCAC 59.093 33.333 0.00 0.00 0.00 3.06
38 39 7.606839 TGCCTGCAAAAATTTATCATGAAATCA 59.393 29.630 0.00 0.00 0.00 2.57
39 40 7.906527 GTGCCTGCAAAAATTTATCATGAAATC 59.093 33.333 0.00 0.00 0.00 2.17
40 41 7.608761 AGTGCCTGCAAAAATTTATCATGAAAT 59.391 29.630 0.00 0.00 0.00 2.17
41 42 6.935771 AGTGCCTGCAAAAATTTATCATGAAA 59.064 30.769 0.00 0.00 0.00 2.69
42 43 6.465948 AGTGCCTGCAAAAATTTATCATGAA 58.534 32.000 0.00 0.00 0.00 2.57
43 44 6.040209 AGTGCCTGCAAAAATTTATCATGA 57.960 33.333 0.00 0.00 0.00 3.07
44 45 6.730960 AAGTGCCTGCAAAAATTTATCATG 57.269 33.333 0.00 0.00 0.00 3.07
45 46 7.839907 TCTAAGTGCCTGCAAAAATTTATCAT 58.160 30.769 0.00 0.00 0.00 2.45
46 47 7.225784 TCTAAGTGCCTGCAAAAATTTATCA 57.774 32.000 0.00 0.00 0.00 2.15
47 48 7.814587 AGTTCTAAGTGCCTGCAAAAATTTATC 59.185 33.333 0.00 0.00 0.00 1.75
48 49 7.670364 AGTTCTAAGTGCCTGCAAAAATTTAT 58.330 30.769 0.00 0.00 0.00 1.40
49 50 7.049799 AGTTCTAAGTGCCTGCAAAAATTTA 57.950 32.000 0.00 0.00 0.00 1.40
50 51 5.917462 AGTTCTAAGTGCCTGCAAAAATTT 58.083 33.333 0.00 0.00 0.00 1.82
51 52 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
52 53 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
53 54 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
54 55 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
55 56 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
56 57 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
57 58 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
58 59 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
59 60 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
60 61 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
61 62 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
62 63 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
63 64 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
64 65 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
127 128 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
128 129 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
129 130 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
130 131 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
131 132 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
132 133 2.418628 ACCCGCATGAACAGTAAAATCG 59.581 45.455 0.00 0.00 0.00 3.34
133 134 3.758300 CACCCGCATGAACAGTAAAATC 58.242 45.455 0.00 0.00 0.00 2.17
134 135 2.094752 GCACCCGCATGAACAGTAAAAT 60.095 45.455 0.00 0.00 38.36 1.82
135 136 1.268352 GCACCCGCATGAACAGTAAAA 59.732 47.619 0.00 0.00 38.36 1.52
136 137 0.878416 GCACCCGCATGAACAGTAAA 59.122 50.000 0.00 0.00 38.36 2.01
137 138 0.250510 TGCACCCGCATGAACAGTAA 60.251 50.000 0.00 0.00 45.36 2.24
138 139 1.373059 TGCACCCGCATGAACAGTA 59.627 52.632 0.00 0.00 45.36 2.74
139 140 2.112928 TGCACCCGCATGAACAGT 59.887 55.556 0.00 0.00 45.36 3.55
148 149 2.313172 CGAGCTCATATGCACCCGC 61.313 63.158 15.40 0.00 39.24 6.13
149 150 1.665916 CCGAGCTCATATGCACCCG 60.666 63.158 15.40 0.00 34.99 5.28
150 151 1.302033 CCCGAGCTCATATGCACCC 60.302 63.158 15.40 0.00 34.99 4.61
151 152 0.882042 CACCCGAGCTCATATGCACC 60.882 60.000 15.40 0.00 34.99 5.01
152 153 1.502163 GCACCCGAGCTCATATGCAC 61.502 60.000 21.82 0.40 33.27 4.57
153 154 1.227645 GCACCCGAGCTCATATGCA 60.228 57.895 21.82 0.00 33.27 3.96
154 155 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
155 156 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
156 157 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
157 158 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
158 159 0.254178 AATTCTGCACCCGAGCTCAT 59.746 50.000 15.40 0.00 34.99 2.90
159 160 0.674581 CAATTCTGCACCCGAGCTCA 60.675 55.000 15.40 0.00 34.99 4.26
160 161 0.391661 TCAATTCTGCACCCGAGCTC 60.392 55.000 2.73 2.73 34.99 4.09
161 162 0.674895 GTCAATTCTGCACCCGAGCT 60.675 55.000 0.00 0.00 34.99 4.09
162 163 0.674895 AGTCAATTCTGCACCCGAGC 60.675 55.000 0.00 0.00 0.00 5.03
163 164 1.813513 AAGTCAATTCTGCACCCGAG 58.186 50.000 0.00 0.00 0.00 4.63
164 165 2.270352 AAAGTCAATTCTGCACCCGA 57.730 45.000 0.00 0.00 0.00 5.14
165 166 2.293122 TGAAAAGTCAATTCTGCACCCG 59.707 45.455 0.00 0.00 0.00 5.28
166 167 3.569701 TCTGAAAAGTCAATTCTGCACCC 59.430 43.478 0.00 0.00 31.88 4.61
167 168 4.836125 TCTGAAAAGTCAATTCTGCACC 57.164 40.909 0.00 0.00 31.88 5.01
168 169 8.239314 TGATTATCTGAAAAGTCAATTCTGCAC 58.761 33.333 0.00 0.00 31.88 4.57
169 170 8.339344 TGATTATCTGAAAAGTCAATTCTGCA 57.661 30.769 0.00 0.00 31.88 4.41
170 171 8.457261 ACTGATTATCTGAAAAGTCAATTCTGC 58.543 33.333 6.11 0.00 31.88 4.26
171 172 9.985318 GACTGATTATCTGAAAAGTCAATTCTG 57.015 33.333 6.11 0.00 35.29 3.02
172 173 9.956640 AGACTGATTATCTGAAAAGTCAATTCT 57.043 29.630 6.11 4.13 37.18 2.40
183 184 9.436957 GTGAACCTAAAAGACTGATTATCTGAA 57.563 33.333 6.11 0.00 0.00 3.02
184 185 8.593679 TGTGAACCTAAAAGACTGATTATCTGA 58.406 33.333 6.11 0.00 0.00 3.27
185 186 8.777865 TGTGAACCTAAAAGACTGATTATCTG 57.222 34.615 0.00 0.00 0.00 2.90
186 187 9.793259 TTTGTGAACCTAAAAGACTGATTATCT 57.207 29.630 0.00 0.00 0.00 1.98
201 202 4.515191 GTGCTCTGTTCATTTGTGAACCTA 59.485 41.667 16.12 5.91 45.41 3.08
209 210 5.130292 AGAATTGGTGCTCTGTTCATTTG 57.870 39.130 0.00 0.00 0.00 2.32
211 212 5.130292 CAAGAATTGGTGCTCTGTTCATT 57.870 39.130 0.00 0.00 43.94 2.57
227 228 4.023707 CGGAAAGCAGAACAACTCAAGAAT 60.024 41.667 0.00 0.00 0.00 2.40
249 250 2.473530 ATGATGCGCAATAAACCACG 57.526 45.000 17.11 0.00 0.00 4.94
258 259 2.034558 TCGAGATCACTATGATGCGCAA 59.965 45.455 17.11 0.00 37.20 4.85
277 278 8.169268 GGAGTTTCAACATGAAATAACTACTCG 58.831 37.037 8.59 0.00 46.55 4.18
332 333 6.475402 GGACACAACGAAATGACAAGATTTTT 59.525 34.615 0.00 0.00 0.00 1.94
396 397 3.565307 TGCTTCCCATTCCCAATGATAC 58.435 45.455 0.00 0.00 41.46 2.24
405 406 3.160269 CCCTAATGATGCTTCCCATTCC 58.840 50.000 0.00 0.00 35.02 3.01
406 407 2.560105 GCCCTAATGATGCTTCCCATTC 59.440 50.000 0.00 0.00 35.02 2.67
407 408 2.601905 GCCCTAATGATGCTTCCCATT 58.398 47.619 0.00 0.00 36.93 3.16
408 409 1.203100 GGCCCTAATGATGCTTCCCAT 60.203 52.381 0.00 0.00 36.70 4.00
409 410 0.185901 GGCCCTAATGATGCTTCCCA 59.814 55.000 0.00 0.00 0.00 4.37
410 411 0.890996 CGGCCCTAATGATGCTTCCC 60.891 60.000 0.00 0.00 0.00 3.97
411 412 0.890996 CCGGCCCTAATGATGCTTCC 60.891 60.000 0.00 0.00 0.00 3.46
429 430 7.701924 TGATAATTTCTTTGATGAATCGCAACC 59.298 33.333 0.00 0.00 0.00 3.77
486 487 3.007635 CGAAGGTGGACATTTTACCTCC 58.992 50.000 0.00 0.00 43.75 4.30
507 508 6.687958 GCGTAGAGAGTTTTAGTGACTGATAC 59.312 42.308 0.00 0.00 0.00 2.24
512 513 3.119919 CCGCGTAGAGAGTTTTAGTGACT 60.120 47.826 4.92 0.00 0.00 3.41
517 518 3.062639 TCGTACCGCGTAGAGAGTTTTAG 59.937 47.826 4.92 0.00 42.13 1.85
527 539 3.279528 GAACAATTTCGTACCGCGTAG 57.720 47.619 4.92 0.00 42.13 3.51
546 558 2.180769 CGCAGATGGACCGTTCGA 59.819 61.111 0.00 0.00 0.00 3.71
593 605 5.885230 TCAGCTTTAATGATTGTGTCTGG 57.115 39.130 0.00 0.00 0.00 3.86
595 607 7.692460 TCATTCAGCTTTAATGATTGTGTCT 57.308 32.000 14.49 0.00 38.19 3.41
635 655 3.653835 AGGCTCAAAACCTAGAATCCC 57.346 47.619 0.00 0.00 35.10 3.85
637 657 7.336931 TGATGTTTAGGCTCAAAACCTAGAATC 59.663 37.037 9.72 6.76 40.80 2.52
654 674 9.918630 AATGTTTCCTTTCTCAATGATGTTTAG 57.081 29.630 0.00 0.00 0.00 1.85
664 684 6.293955 CGCTCCTTTAATGTTTCCTTTCTCAA 60.294 38.462 0.00 0.00 0.00 3.02
665 685 5.181245 CGCTCCTTTAATGTTTCCTTTCTCA 59.819 40.000 0.00 0.00 0.00 3.27
668 688 5.048991 TGACGCTCCTTTAATGTTTCCTTTC 60.049 40.000 0.00 0.00 0.00 2.62
673 693 4.742438 TGTGACGCTCCTTTAATGTTTC 57.258 40.909 0.00 0.00 0.00 2.78
679 699 2.177394 TGCATGTGACGCTCCTTTAA 57.823 45.000 0.00 0.00 0.00 1.52
699 719 4.869861 CGACATGTGATCAGGTTATCAACA 59.130 41.667 1.15 0.00 38.73 3.33
707 727 0.173481 CCGACGACATGTGATCAGGT 59.827 55.000 1.15 0.00 41.38 4.00
721 741 2.604174 GGACAGGCAAACACCGACG 61.604 63.158 0.00 0.00 33.69 5.12
722 742 0.034337 TAGGACAGGCAAACACCGAC 59.966 55.000 0.00 0.00 33.69 4.79
740 760 9.061435 GGAAAAATTTGTTGACATTTCCCATTA 57.939 29.630 12.67 0.00 39.76 1.90
745 765 7.041848 CCAGAGGAAAAATTTGTTGACATTTCC 60.042 37.037 14.66 14.66 43.80 3.13
746 766 7.495606 ACCAGAGGAAAAATTTGTTGACATTTC 59.504 33.333 0.00 0.00 0.00 2.17
760 781 2.303022 AGCAGATCGACCAGAGGAAAAA 59.697 45.455 0.00 0.00 0.00 1.94
781 802 6.993902 AGGGTTCTCGTGATTTTGTACTTAAA 59.006 34.615 0.00 0.00 0.00 1.52
784 805 4.755123 CAGGGTTCTCGTGATTTTGTACTT 59.245 41.667 0.00 0.00 33.39 2.24
786 807 4.062991 ACAGGGTTCTCGTGATTTTGTAC 58.937 43.478 0.00 0.00 35.42 2.90
787 808 4.345859 ACAGGGTTCTCGTGATTTTGTA 57.654 40.909 0.00 0.00 35.42 2.41
788 809 3.208747 ACAGGGTTCTCGTGATTTTGT 57.791 42.857 0.00 0.00 35.42 2.83
789 810 5.682943 TTTACAGGGTTCTCGTGATTTTG 57.317 39.130 0.00 0.00 35.42 2.44
790 811 6.894339 ATTTTACAGGGTTCTCGTGATTTT 57.106 33.333 0.00 0.00 35.42 1.82
802 827 5.418840 CCATCTGCAACTAATTTTACAGGGT 59.581 40.000 0.00 0.00 0.00 4.34
850 875 2.665185 AAAGTGACGGCGGTGCTC 60.665 61.111 13.24 0.00 0.00 4.26
856 881 1.574428 CAAAGGGAAAGTGACGGCG 59.426 57.895 4.80 4.80 0.00 6.46
914 946 8.752005 TTATAAGCAAGAAGAGTATTGGCATT 57.248 30.769 0.00 0.00 0.00 3.56
929 961 7.661437 TGCATGGGTAGATAACTTATAAGCAAG 59.339 37.037 12.54 0.00 0.00 4.01
930 962 7.513856 TGCATGGGTAGATAACTTATAAGCAA 58.486 34.615 12.54 1.19 0.00 3.91
931 963 7.073457 TGCATGGGTAGATAACTTATAAGCA 57.927 36.000 12.54 1.18 0.00 3.91
955 987 6.206634 CCTGGCCAAAATTATCACGTATACAT 59.793 38.462 7.01 0.00 0.00 2.29
957 989 5.761234 TCCTGGCCAAAATTATCACGTATAC 59.239 40.000 7.01 0.00 0.00 1.47
975 1007 1.470494 GCTCTTTTAACAGCTCCTGGC 59.530 52.381 0.00 0.00 42.19 4.85
1039 1071 1.337071 GCGAGGTGATATTGGTCGAGA 59.663 52.381 0.00 0.00 32.32 4.04
1057 1089 5.339990 CCAACAATTTTACCCTGATAAGCG 58.660 41.667 0.00 0.00 0.00 4.68
1229 1300 2.094854 GGAGATTGCTTTCAACTGCTGG 60.095 50.000 0.00 0.00 34.60 4.85
1262 1333 1.668751 TGGTTCTTGCTCGTTGTTGAC 59.331 47.619 0.00 0.00 0.00 3.18
1269 1340 0.463654 TTGCTGTGGTTCTTGCTCGT 60.464 50.000 0.00 0.00 0.00 4.18
1289 1360 0.904865 TCCTTGGATCGTGAGGCAGT 60.905 55.000 3.46 0.00 0.00 4.40
1356 1427 2.667418 CAGCACCCTGTCCCTCAG 59.333 66.667 0.00 0.00 43.27 3.35
1496 1567 1.738099 CAGCGGGTCGACAAAGAGG 60.738 63.158 18.91 0.30 0.00 3.69
1502 1573 2.915659 AGGAACAGCGGGTCGACA 60.916 61.111 18.91 0.00 0.00 4.35
1595 1666 2.356313 AACACGTCCAGCAGCGAG 60.356 61.111 0.00 0.00 0.00 5.03
1619 1690 4.100084 CGGAGGCAGATGTGGGCA 62.100 66.667 0.00 0.00 0.00 5.36
1685 1756 1.452833 GGGCTGGATCACAAGCTCC 60.453 63.158 12.36 9.05 0.00 4.70
1767 1838 4.986054 ATGTCCAAGTTACCTGTGGTAA 57.014 40.909 5.20 5.20 44.72 2.85
1838 1910 0.438830 CACGGTTACAGAAGCTTCGC 59.561 55.000 20.43 9.55 0.00 4.70
1840 1912 2.221055 CACACACGGTTACAGAAGCTTC 59.779 50.000 19.11 19.11 0.00 3.86
1843 1915 1.578583 ACACACACGGTTACAGAAGC 58.421 50.000 0.00 0.00 0.00 3.86
1854 1926 4.034626 TGTGGAAACAGATAAACACACACG 59.965 41.667 0.00 0.00 44.46 4.49
1855 1927 5.065988 ACTGTGGAAACAGATAAACACACAC 59.934 40.000 12.57 0.00 44.46 3.82
1891 1966 0.459899 TTGAGCATAGGCACGACGAT 59.540 50.000 0.00 0.00 44.61 3.73
1947 2022 4.125703 GGTACTGGAAGATGATGCTGAAG 58.874 47.826 0.00 0.00 37.43 3.02
2169 2244 1.448540 CTCAGTCCGACACATGGGC 60.449 63.158 0.00 0.00 0.00 5.36
2184 2259 5.120674 CACAGTATTGCAATCGAAGAACTCA 59.879 40.000 16.86 0.00 43.58 3.41
2202 2277 1.047801 TCCTGTTGCTGCTCACAGTA 58.952 50.000 22.60 11.07 46.30 2.74
2205 2280 1.227943 GGTCCTGTTGCTGCTCACA 60.228 57.895 0.00 3.13 0.00 3.58
2208 2283 0.035630 AGATGGTCCTGTTGCTGCTC 60.036 55.000 0.00 0.00 0.00 4.26
2408 2483 8.590204 TCCAATATGTAAGTGACACAGAGTTAA 58.410 33.333 8.59 0.00 42.17 2.01
2411 2486 6.014584 TGTCCAATATGTAAGTGACACAGAGT 60.015 38.462 8.59 0.00 42.17 3.24
2412 2487 6.398095 TGTCCAATATGTAAGTGACACAGAG 58.602 40.000 8.59 0.00 42.17 3.35
2417 2492 5.755409 AGGTGTCCAATATGTAAGTGACA 57.245 39.130 0.00 0.00 43.97 3.58
2420 2495 5.872617 TCGAAAGGTGTCCAATATGTAAGTG 59.127 40.000 0.00 0.00 0.00 3.16
2422 2497 6.978343 TTCGAAAGGTGTCCAATATGTAAG 57.022 37.500 0.00 0.00 0.00 2.34
2423 2498 8.885722 GTTATTCGAAAGGTGTCCAATATGTAA 58.114 33.333 0.00 0.00 0.00 2.41
2425 2500 7.110155 AGTTATTCGAAAGGTGTCCAATATGT 58.890 34.615 0.00 0.00 0.00 2.29
2426 2501 7.553881 AGTTATTCGAAAGGTGTCCAATATG 57.446 36.000 0.00 0.00 0.00 1.78
2427 2502 9.847224 ATTAGTTATTCGAAAGGTGTCCAATAT 57.153 29.630 0.00 0.00 0.00 1.28
2429 2504 9.675464 TTATTAGTTATTCGAAAGGTGTCCAAT 57.325 29.630 0.00 0.00 0.00 3.16
2430 2505 9.504708 TTTATTAGTTATTCGAAAGGTGTCCAA 57.495 29.630 0.00 0.00 0.00 3.53
2452 2527 8.474831 GGCCAATAAGTAACTGGAACATTTTAT 58.525 33.333 0.00 0.00 38.20 1.40
2453 2528 7.451877 TGGCCAATAAGTAACTGGAACATTTTA 59.548 33.333 0.61 0.00 38.20 1.52
2461 2536 4.584638 ACATGGCCAATAAGTAACTGGA 57.415 40.909 10.96 0.00 31.38 3.86
2462 2537 5.418840 AGAAACATGGCCAATAAGTAACTGG 59.581 40.000 10.96 0.00 0.00 4.00
2470 2545 9.688091 TGTATTAGTTAGAAACATGGCCAATAA 57.312 29.630 10.96 0.00 0.00 1.40
2518 2599 2.520904 GCTCGTCGCCAGATTCTGC 61.521 63.158 8.23 3.45 0.00 4.26
2653 2736 3.427516 TCTCGTTTATTGTTTGTCGCG 57.572 42.857 0.00 0.00 0.00 5.87
2656 2739 8.545420 TCTACAACTTCTCGTTTATTGTTTGTC 58.455 33.333 0.00 0.00 35.26 3.18
2657 2740 8.428186 TCTACAACTTCTCGTTTATTGTTTGT 57.572 30.769 0.00 0.00 35.26 2.83
2703 2786 6.240894 TGGAGATAAGACTGCAAAGACAAAT 58.759 36.000 0.00 0.00 35.47 2.32
2719 2802 3.244215 GGATCATGGTCGCTTGGAGATAA 60.244 47.826 0.00 0.00 0.00 1.75
3602 3691 6.737254 ATACAATCGACCGAAACAGAAAAT 57.263 33.333 0.00 0.00 0.00 1.82
3608 3697 4.987408 TCCTATACAATCGACCGAAACA 57.013 40.909 0.00 0.00 0.00 2.83
3614 3703 2.035576 AGCGGTTCCTATACAATCGACC 59.964 50.000 0.00 0.00 28.16 4.79
3634 3723 1.108776 TCCGTCCGTTTCCTATCCAG 58.891 55.000 0.00 0.00 0.00 3.86
3662 3751 4.100498 AGTCAACGTTTGGAGGTAGAAGAA 59.900 41.667 0.00 0.00 0.00 2.52
3686 3775 2.223782 GCAGTTTGCAACAGGATTGACA 60.224 45.455 0.00 0.00 44.26 3.58
3722 3811 0.670546 AAGGACACCAGATTCGTGCG 60.671 55.000 0.00 0.00 34.45 5.34
3724 3813 2.666508 CGTTAAGGACACCAGATTCGTG 59.333 50.000 0.00 0.00 37.26 4.35
3727 3816 3.660865 ACACGTTAAGGACACCAGATTC 58.339 45.455 1.43 0.00 0.00 2.52
3730 3819 3.194116 GGATACACGTTAAGGACACCAGA 59.806 47.826 1.43 0.00 0.00 3.86
3755 3844 4.441695 TCCGAGGAGCGCTGCAAG 62.442 66.667 31.08 22.17 39.11 4.01
3756 3845 4.441695 CTCCGAGGAGCGCTGCAA 62.442 66.667 31.08 11.97 39.11 4.08
3762 3851 2.835431 ATCACCCTCCGAGGAGCG 60.835 66.667 16.69 7.90 37.67 5.03
3763 3852 1.617947 AACATCACCCTCCGAGGAGC 61.618 60.000 16.69 0.00 37.67 4.70
3764 3853 0.176680 CAACATCACCCTCCGAGGAG 59.823 60.000 16.69 12.06 37.67 3.69
3765 3854 0.544357 ACAACATCACCCTCCGAGGA 60.544 55.000 16.69 0.00 37.67 3.71
3766 3855 0.108138 GACAACATCACCCTCCGAGG 60.108 60.000 7.56 7.56 34.30 4.63
3767 3856 0.898320 AGACAACATCACCCTCCGAG 59.102 55.000 0.00 0.00 0.00 4.63
3768 3857 0.895530 GAGACAACATCACCCTCCGA 59.104 55.000 0.00 0.00 0.00 4.55
3769 3858 0.898320 AGAGACAACATCACCCTCCG 59.102 55.000 0.00 0.00 0.00 4.63
3770 3859 1.902508 TGAGAGACAACATCACCCTCC 59.097 52.381 0.00 0.00 0.00 4.30
3771 3860 3.902881 ATGAGAGACAACATCACCCTC 57.097 47.619 0.00 0.00 0.00 4.30
3772 3861 4.566488 GGAAATGAGAGACAACATCACCCT 60.566 45.833 0.00 0.00 0.00 4.34
3773 3862 3.691609 GGAAATGAGAGACAACATCACCC 59.308 47.826 0.00 0.00 0.00 4.61
3774 3863 3.691609 GGGAAATGAGAGACAACATCACC 59.308 47.826 0.00 0.00 0.00 4.02
3775 3864 4.583871 AGGGAAATGAGAGACAACATCAC 58.416 43.478 0.00 0.00 0.00 3.06
3776 3865 4.916041 AGGGAAATGAGAGACAACATCA 57.084 40.909 0.00 0.00 0.00 3.07
3777 3866 5.006386 ACAAGGGAAATGAGAGACAACATC 58.994 41.667 0.00 0.00 0.00 3.06
3778 3867 4.990526 ACAAGGGAAATGAGAGACAACAT 58.009 39.130 0.00 0.00 0.00 2.71
3779 3868 4.437682 ACAAGGGAAATGAGAGACAACA 57.562 40.909 0.00 0.00 0.00 3.33
3780 3869 5.532779 AGAAACAAGGGAAATGAGAGACAAC 59.467 40.000 0.00 0.00 0.00 3.32
3781 3870 5.694995 AGAAACAAGGGAAATGAGAGACAA 58.305 37.500 0.00 0.00 0.00 3.18
3782 3871 5.310409 AGAAACAAGGGAAATGAGAGACA 57.690 39.130 0.00 0.00 0.00 3.41
3783 3872 6.641169 AAAGAAACAAGGGAAATGAGAGAC 57.359 37.500 0.00 0.00 0.00 3.36
3784 3873 6.461509 GCAAAAGAAACAAGGGAAATGAGAGA 60.462 38.462 0.00 0.00 0.00 3.10
3785 3874 5.693555 GCAAAAGAAACAAGGGAAATGAGAG 59.306 40.000 0.00 0.00 0.00 3.20
3786 3875 5.600696 GCAAAAGAAACAAGGGAAATGAGA 58.399 37.500 0.00 0.00 0.00 3.27
3787 3876 4.445385 CGCAAAAGAAACAAGGGAAATGAG 59.555 41.667 0.00 0.00 0.00 2.90
3788 3877 4.098654 TCGCAAAAGAAACAAGGGAAATGA 59.901 37.500 0.00 0.00 0.00 2.57
3789 3878 4.367450 TCGCAAAAGAAACAAGGGAAATG 58.633 39.130 0.00 0.00 0.00 2.32
3790 3879 4.340950 TCTCGCAAAAGAAACAAGGGAAAT 59.659 37.500 0.00 0.00 0.00 2.17
3791 3880 3.697045 TCTCGCAAAAGAAACAAGGGAAA 59.303 39.130 0.00 0.00 0.00 3.13
3792 3881 3.283751 TCTCGCAAAAGAAACAAGGGAA 58.716 40.909 0.00 0.00 0.00 3.97
3793 3882 2.878406 CTCTCGCAAAAGAAACAAGGGA 59.122 45.455 0.00 0.00 0.00 4.20
3794 3883 2.878406 TCTCTCGCAAAAGAAACAAGGG 59.122 45.455 0.00 0.00 0.00 3.95
3795 3884 3.561725 ACTCTCTCGCAAAAGAAACAAGG 59.438 43.478 0.00 0.00 0.00 3.61
3796 3885 4.034510 ACACTCTCTCGCAAAAGAAACAAG 59.965 41.667 0.00 0.00 0.00 3.16
3797 3886 3.938963 ACACTCTCTCGCAAAAGAAACAA 59.061 39.130 0.00 0.00 0.00 2.83
3798 3887 3.531538 ACACTCTCTCGCAAAAGAAACA 58.468 40.909 0.00 0.00 0.00 2.83
3799 3888 4.537936 AACACTCTCTCGCAAAAGAAAC 57.462 40.909 0.00 0.00 0.00 2.78
3800 3889 5.597806 TCTAACACTCTCTCGCAAAAGAAA 58.402 37.500 0.00 0.00 0.00 2.52
3801 3890 5.196341 TCTAACACTCTCTCGCAAAAGAA 57.804 39.130 0.00 0.00 0.00 2.52
3802 3891 4.848562 TCTAACACTCTCTCGCAAAAGA 57.151 40.909 0.00 0.00 0.00 2.52
3803 3892 5.907197 TTTCTAACACTCTCTCGCAAAAG 57.093 39.130 0.00 0.00 0.00 2.27
3804 3893 6.861065 ATTTTCTAACACTCTCTCGCAAAA 57.139 33.333 0.00 0.00 0.00 2.44
3805 3894 6.861065 AATTTTCTAACACTCTCTCGCAAA 57.139 33.333 0.00 0.00 0.00 3.68
3806 3895 7.656137 ACTTAATTTTCTAACACTCTCTCGCAA 59.344 33.333 0.00 0.00 0.00 4.85
3807 3896 7.116376 CACTTAATTTTCTAACACTCTCTCGCA 59.884 37.037 0.00 0.00 0.00 5.10
3808 3897 7.328737 TCACTTAATTTTCTAACACTCTCTCGC 59.671 37.037 0.00 0.00 0.00 5.03
3809 3898 8.744008 TCACTTAATTTTCTAACACTCTCTCG 57.256 34.615 0.00 0.00 0.00 4.04
3907 4001 3.986572 TCACAGGCGCAAATTGTTAATTG 59.013 39.130 10.83 0.00 0.00 2.32
3913 4007 1.612950 TCAATCACAGGCGCAAATTGT 59.387 42.857 10.83 4.89 0.00 2.71
3937 4031 9.232882 TGGGACCTAACCATAATCTTAATTAGT 57.767 33.333 0.00 0.00 31.83 2.24
4003 4097 4.724074 ACCACGAACGATCAAATAGGTA 57.276 40.909 0.14 0.00 0.00 3.08
4016 4110 8.457261 ACTATTATCCTAATCGATACCACGAAC 58.543 37.037 0.00 0.00 45.16 3.95
4017 4111 8.456471 CACTATTATCCTAATCGATACCACGAA 58.544 37.037 0.00 0.00 45.16 3.85
4018 4112 7.414873 GCACTATTATCCTAATCGATACCACGA 60.415 40.741 0.00 0.00 46.04 4.35
4019 4113 6.691818 GCACTATTATCCTAATCGATACCACG 59.308 42.308 0.00 0.00 0.00 4.94
4022 4116 7.108841 TGGCACTATTATCCTAATCGATACC 57.891 40.000 0.00 0.00 0.00 2.73
4039 4133 3.625764 GGCGTAAATTTCAGATGGCACTA 59.374 43.478 0.00 0.00 0.00 2.74
4046 4140 5.913137 TGGATTTGGCGTAAATTTCAGAT 57.087 34.783 0.00 0.00 39.06 2.90
4049 4143 5.641209 CCAATTGGATTTGGCGTAAATTTCA 59.359 36.000 20.50 0.00 39.76 2.69
4059 4153 1.405933 GCACTCCCAATTGGATTTGGC 60.406 52.381 26.60 17.27 44.07 4.52
4094 4188 1.301677 GGAGCAAAGTCAGGCCTTCG 61.302 60.000 0.00 0.00 0.00 3.79
4133 4233 2.068519 CGATGACAAACTGTAGCAGCA 58.931 47.619 0.00 0.00 34.37 4.41
4146 4246 3.695060 GGAGAAAGTAGAGTCCGATGACA 59.305 47.826 0.00 0.00 44.33 3.58
4164 4264 0.039764 AGAGGTCATCACGGTGGAGA 59.960 55.000 8.50 3.89 0.00 3.71
4178 4278 5.012354 TGTTTATACCTTCGTTTGGAGAGGT 59.988 40.000 0.00 0.00 0.00 3.85
4191 4291 6.269307 AGTGGACAGTAGTGTGTTTATACCTT 59.731 38.462 8.23 0.00 36.88 3.50
4239 4339 7.816513 CGGATCTGATCTAATACACATGAACAT 59.183 37.037 16.61 0.00 0.00 2.71
4258 4358 4.761235 ATGCAATTGCTAATCGGATCTG 57.239 40.909 29.37 0.00 42.66 2.90
4281 4381 7.148069 ACCAAATGTTAGACTAATTGCTTAGGC 60.148 37.037 0.00 0.00 42.49 3.93
4282 4382 8.281212 ACCAAATGTTAGACTAATTGCTTAGG 57.719 34.615 0.00 0.00 38.97 2.69
4285 4385 9.461312 TGATACCAAATGTTAGACTAATTGCTT 57.539 29.630 0.00 0.00 0.00 3.91
4294 4395 5.448632 CCGGCTTTGATACCAAATGTTAGAC 60.449 44.000 0.00 0.00 41.03 2.59
4312 4413 2.741878 CGTGATTAGATCCAACCGGCTT 60.742 50.000 0.00 0.00 0.00 4.35
4450 4553 1.823295 GGTAGCATCGCCTTGAGGA 59.177 57.895 0.06 0.00 37.39 3.71
4466 4569 1.517832 GGATGTGCTCAGCTACGGT 59.482 57.895 0.00 0.00 0.00 4.83
4474 4577 1.218047 GTACAGCCGGATGTGCTCA 59.782 57.895 34.54 12.72 36.81 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.