Multiple sequence alignment - TraesCS6B01G257800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G257800 chr6B 100.000 2996 0 0 1 2996 462147520 462150515 0.000000e+00 5533.0
1 TraesCS6B01G257800 chr6B 87.097 62 7 1 2555 2615 684764752 684764691 5.360000e-08 69.4
2 TraesCS6B01G257800 chr6D 95.112 1698 58 17 693 2378 299167969 299169653 0.000000e+00 2652.0
3 TraesCS6B01G257800 chr6D 84.795 684 60 24 1 679 299167185 299167829 0.000000e+00 647.0
4 TraesCS6B01G257800 chr6D 86.513 304 33 4 2688 2987 299169916 299170215 8.010000e-86 327.0
5 TraesCS6B01G257800 chr6D 90.948 232 10 4 2379 2600 299169686 299169916 4.850000e-78 302.0
6 TraesCS6B01G257800 chr6A 93.135 1617 70 18 794 2381 420366224 420364620 0.000000e+00 2333.0
7 TraesCS6B01G257800 chr6A 91.615 322 20 6 1 320 420380798 420380482 3.550000e-119 438.0
8 TraesCS6B01G257800 chr6A 91.304 184 13 2 2687 2870 420102319 420102139 6.410000e-62 248.0
9 TraesCS6B01G257800 chr6A 96.748 123 4 0 311 433 420380330 420380208 3.910000e-49 206.0
10 TraesCS6B01G257800 chr6A 93.130 131 7 2 2380 2510 420364557 420364429 1.100000e-44 191.0
11 TraesCS6B01G257800 chr6A 85.938 128 14 3 573 697 420366410 420366284 1.870000e-27 134.0
12 TraesCS6B01G257800 chr6A 97.500 40 1 0 693 732 420366265 420366226 5.360000e-08 69.4
13 TraesCS6B01G257800 chr4B 94.828 58 3 0 2558 2615 24337572 24337629 1.140000e-14 91.6
14 TraesCS6B01G257800 chr4D 92.982 57 4 0 2558 2614 426902523 426902467 1.910000e-12 84.2
15 TraesCS6B01G257800 chr1B 91.667 60 5 0 2553 2612 32788795 32788736 1.910000e-12 84.2
16 TraesCS6B01G257800 chr3B 91.379 58 5 0 2558 2615 147676910 147676853 2.480000e-11 80.5
17 TraesCS6B01G257800 chr2A 94.231 52 3 0 2558 2609 697250683 697250734 2.480000e-11 80.5
18 TraesCS6B01G257800 chr7B 91.228 57 5 0 2558 2614 699542480 699542536 8.900000e-11 78.7
19 TraesCS6B01G257800 chr2D 91.071 56 4 1 2554 2609 629460642 629460696 1.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G257800 chr6B 462147520 462150515 2995 False 5533.00 5533 100.00000 1 2996 1 chr6B.!!$F1 2995
1 TraesCS6B01G257800 chr6D 299167185 299170215 3030 False 982.00 2652 89.34200 1 2987 4 chr6D.!!$F1 2986
2 TraesCS6B01G257800 chr6A 420364429 420366410 1981 True 681.85 2333 92.42575 573 2510 4 chr6A.!!$R2 1937
3 TraesCS6B01G257800 chr6A 420380208 420380798 590 True 322.00 438 94.18150 1 433 2 chr6A.!!$R3 432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 663 0.030773 GTCGCATCTCGGCATCTGTA 59.969 55.0 0.0 0.0 43.43 2.74 F
569 736 0.401738 CTGCAAAGGGGGAAGAGACA 59.598 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 2245 0.532115 GGGTGGCCTGCATTACAAAG 59.468 55.0 3.32 0.0 0.0 2.77 R
2478 2872 0.723981 GAGAAACTCGCATGACAGCC 59.276 55.0 0.00 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.962182 TCACCCTCAGTCAGATCATATTTTT 58.038 36.000 0.00 0.00 0.00 1.94
67 68 7.718314 TCAGTCAGATCATATTTTTCCTGGATG 59.282 37.037 0.00 0.00 0.00 3.51
80 81 8.434589 TTTTTCCTGGATGATTCTTTGGTTAT 57.565 30.769 0.00 0.00 0.00 1.89
84 85 7.872138 TCCTGGATGATTCTTTGGTTATAACT 58.128 34.615 15.05 0.00 0.00 2.24
85 86 7.993183 TCCTGGATGATTCTTTGGTTATAACTC 59.007 37.037 15.05 6.39 0.00 3.01
120 121 9.693739 TTGAATTTTCCAGCTGTATTATTAGGA 57.306 29.630 13.81 0.00 0.00 2.94
137 138 2.440409 AGGACTGCATCATTGGTTGAC 58.560 47.619 0.00 0.00 37.11 3.18
190 192 1.065854 ACCTGTAGAAGCATCAGCACC 60.066 52.381 0.00 0.00 45.49 5.01
254 256 0.665835 GTTGTGGGCGATGTTTGACA 59.334 50.000 0.00 0.00 0.00 3.58
282 284 4.516698 CCATAATCCATGTCCTCTTTTCCG 59.483 45.833 0.00 0.00 32.21 4.30
283 285 2.717639 ATCCATGTCCTCTTTTCCGG 57.282 50.000 0.00 0.00 0.00 5.14
327 491 3.010584 TCCTGCTAAAAGGAATCCTTGCT 59.989 43.478 16.25 8.61 43.92 3.91
332 496 1.177401 AAAGGAATCCTTGCTTCGCC 58.823 50.000 16.25 0.00 43.92 5.54
428 595 4.752101 CCCAGTTCATGAGGAATATTCGTC 59.248 45.833 24.66 24.66 41.21 4.20
445 612 3.031736 TCGTCCTCTTATTTCCCCAGAG 58.968 50.000 0.00 0.00 34.85 3.35
447 614 3.068873 CGTCCTCTTATTTCCCCAGAGAG 59.931 52.174 0.00 0.00 36.88 3.20
452 619 0.346932 TATTTCCCCAGAGAGCCCCT 59.653 55.000 0.00 0.00 0.00 4.79
454 621 3.984186 TTCCCCAGAGAGCCCCTCG 62.984 68.421 0.00 0.00 46.49 4.63
461 628 0.335361 AGAGAGCCCCTCGGTAGAAA 59.665 55.000 0.00 0.00 46.49 2.52
465 632 1.221021 GCCCCTCGGTAGAAACTGG 59.779 63.158 0.00 0.00 32.40 4.00
476 643 7.385778 TCGGTAGAAACTGGAAATAAAATGG 57.614 36.000 0.00 0.00 32.40 3.16
478 645 6.152154 CGGTAGAAACTGGAAATAAAATGGGT 59.848 38.462 0.00 0.00 0.00 4.51
479 646 7.544622 GGTAGAAACTGGAAATAAAATGGGTC 58.455 38.462 0.00 0.00 0.00 4.46
485 652 4.277476 TGGAAATAAAATGGGTCGCATCT 58.723 39.130 2.42 0.00 0.00 2.90
486 653 4.338118 TGGAAATAAAATGGGTCGCATCTC 59.662 41.667 2.42 0.00 0.00 2.75
488 655 1.948104 TAAAATGGGTCGCATCTCGG 58.052 50.000 2.42 0.00 39.05 4.63
489 656 1.376609 AAAATGGGTCGCATCTCGGC 61.377 55.000 2.42 0.00 43.18 5.54
490 657 2.535485 AAATGGGTCGCATCTCGGCA 62.535 55.000 2.42 0.00 46.31 5.69
492 659 2.663188 GGGTCGCATCTCGGCATC 60.663 66.667 0.00 0.00 46.31 3.91
494 661 1.953138 GGTCGCATCTCGGCATCTG 60.953 63.158 0.00 0.00 46.31 2.90
495 662 1.227089 GTCGCATCTCGGCATCTGT 60.227 57.895 0.00 0.00 43.43 3.41
496 663 0.030773 GTCGCATCTCGGCATCTGTA 59.969 55.000 0.00 0.00 43.43 2.74
497 664 0.961753 TCGCATCTCGGCATCTGTAT 59.038 50.000 0.00 0.00 39.05 2.29
498 665 2.095212 GTCGCATCTCGGCATCTGTATA 60.095 50.000 0.00 0.00 43.43 1.47
499 666 2.095212 TCGCATCTCGGCATCTGTATAC 60.095 50.000 0.00 0.00 39.05 1.47
510 677 6.046593 CGGCATCTGTATACTTTTGTCCTTA 58.953 40.000 4.17 0.00 0.00 2.69
516 683 9.819267 ATCTGTATACTTTTGTCCTTAGCTTAC 57.181 33.333 4.17 0.00 0.00 2.34
517 684 8.255905 TCTGTATACTTTTGTCCTTAGCTTACC 58.744 37.037 4.17 0.00 0.00 2.85
518 685 7.037438 TGTATACTTTTGTCCTTAGCTTACCG 58.963 38.462 4.17 0.00 0.00 4.02
519 686 3.671716 ACTTTTGTCCTTAGCTTACCGG 58.328 45.455 0.00 0.00 0.00 5.28
521 688 3.323751 TTTGTCCTTAGCTTACCGGTC 57.676 47.619 12.40 0.00 0.00 4.79
522 689 1.927487 TGTCCTTAGCTTACCGGTCA 58.073 50.000 12.40 0.00 0.00 4.02
524 691 2.835764 TGTCCTTAGCTTACCGGTCAAT 59.164 45.455 12.40 0.00 0.00 2.57
525 692 4.025360 TGTCCTTAGCTTACCGGTCAATA 58.975 43.478 12.40 0.00 0.00 1.90
526 693 4.467082 TGTCCTTAGCTTACCGGTCAATAA 59.533 41.667 12.40 5.83 0.00 1.40
527 694 4.807834 GTCCTTAGCTTACCGGTCAATAAC 59.192 45.833 12.40 0.00 0.00 1.89
529 696 5.188359 TCCTTAGCTTACCGGTCAATAACTT 59.812 40.000 12.40 0.00 0.00 2.66
532 699 5.622770 AGCTTACCGGTCAATAACTTTTG 57.377 39.130 12.40 0.00 0.00 2.44
533 700 4.457949 AGCTTACCGGTCAATAACTTTTGG 59.542 41.667 12.40 0.00 0.00 3.28
534 701 4.456566 GCTTACCGGTCAATAACTTTTGGA 59.543 41.667 12.40 0.00 0.00 3.53
535 702 5.048573 GCTTACCGGTCAATAACTTTTGGAA 60.049 40.000 12.40 0.00 0.00 3.53
536 703 4.841443 ACCGGTCAATAACTTTTGGAAC 57.159 40.909 0.00 0.00 0.00 3.62
537 704 4.208746 ACCGGTCAATAACTTTTGGAACA 58.791 39.130 0.00 0.00 0.00 3.18
538 705 4.830600 ACCGGTCAATAACTTTTGGAACAT 59.169 37.500 0.00 0.00 39.30 2.71
539 706 5.303333 ACCGGTCAATAACTTTTGGAACATT 59.697 36.000 0.00 0.00 39.30 2.71
540 707 6.490721 ACCGGTCAATAACTTTTGGAACATTA 59.509 34.615 0.00 0.00 39.30 1.90
542 709 8.679100 CCGGTCAATAACTTTTGGAACATTATA 58.321 33.333 0.00 0.00 39.30 0.98
543 710 9.498307 CGGTCAATAACTTTTGGAACATTATAC 57.502 33.333 0.00 0.00 39.30 1.47
548 715 9.869757 AATAACTTTTGGAACATTATACCTTGC 57.130 29.630 0.00 0.00 39.30 4.01
549 716 7.539034 AACTTTTGGAACATTATACCTTGCT 57.461 32.000 0.00 0.00 39.30 3.91
550 717 7.158099 ACTTTTGGAACATTATACCTTGCTC 57.842 36.000 0.00 0.00 39.30 4.26
551 718 6.948309 ACTTTTGGAACATTATACCTTGCTCT 59.052 34.615 0.00 0.00 39.30 4.09
552 719 6.757897 TTTGGAACATTATACCTTGCTCTG 57.242 37.500 0.00 0.00 39.30 3.35
553 720 4.199310 TGGAACATTATACCTTGCTCTGC 58.801 43.478 0.00 0.00 0.00 4.26
555 722 4.640201 GGAACATTATACCTTGCTCTGCAA 59.360 41.667 4.87 4.87 46.80 4.08
556 723 8.662584 TTGGAACATTATACCTTGCTCTGCAAA 61.663 37.037 6.44 0.00 43.64 3.68
562 729 3.260297 TTGCTCTGCAAAGGGGGA 58.740 55.556 2.24 0.00 45.96 4.81
563 730 1.541169 TTGCTCTGCAAAGGGGGAA 59.459 52.632 2.24 0.00 45.96 3.97
564 731 0.540365 TTGCTCTGCAAAGGGGGAAG 60.540 55.000 2.24 0.00 45.96 3.46
565 732 1.380302 GCTCTGCAAAGGGGGAAGA 59.620 57.895 0.00 0.00 0.00 2.87
566 733 0.679321 GCTCTGCAAAGGGGGAAGAG 60.679 60.000 0.00 0.00 37.92 2.85
567 734 0.987294 CTCTGCAAAGGGGGAAGAGA 59.013 55.000 0.00 0.00 37.20 3.10
568 735 0.693049 TCTGCAAAGGGGGAAGAGAC 59.307 55.000 0.00 0.00 0.00 3.36
569 736 0.401738 CTGCAAAGGGGGAAGAGACA 59.598 55.000 0.00 0.00 0.00 3.41
679 848 9.762381 TCCTAGGTTGATGTTGGTAAAAATTAT 57.238 29.630 9.08 0.00 0.00 1.28
728 1024 4.202131 TGCTTTCACTGATTCATTGTTGCA 60.202 37.500 12.80 12.80 0.00 4.08
742 1038 8.467963 TTCATTGTTGCATATATTCTCCACAT 57.532 30.769 0.00 0.00 0.00 3.21
758 1054 7.928307 TCTCCACATCTAATTCTCCTTTTTG 57.072 36.000 0.00 0.00 0.00 2.44
759 1055 6.886459 TCTCCACATCTAATTCTCCTTTTTGG 59.114 38.462 0.00 0.00 37.10 3.28
793 1089 9.612066 TTGTTTTGAGGAAAAGATTTATTTGCT 57.388 25.926 0.00 0.00 40.54 3.91
797 1093 6.158598 TGAGGAAAAGATTTATTTGCTGCAC 58.841 36.000 0.00 0.00 38.37 4.57
812 1108 2.229062 GCTGCACCCTAAAAGAAACTCC 59.771 50.000 0.00 0.00 0.00 3.85
962 1260 2.590092 CACCCCCTCCGTCCAATC 59.410 66.667 0.00 0.00 0.00 2.67
1119 1417 2.049802 TTCGCCGTCAAGTCCGTC 60.050 61.111 0.00 0.00 0.00 4.79
1305 1603 2.439701 CTCGACTGGGTCCGCCTA 60.440 66.667 0.00 0.00 34.45 3.93
1626 1924 1.521457 CGCAGGCGTGGTGATGTAT 60.521 57.895 8.72 0.00 34.35 2.29
1838 2136 4.151582 GCACGCGCTAACCCCCTA 62.152 66.667 5.73 0.00 34.30 3.53
1842 2140 1.300697 CGCGCTAACCCCCTACATC 60.301 63.158 5.56 0.00 0.00 3.06
1843 2141 1.745320 CGCGCTAACCCCCTACATCT 61.745 60.000 5.56 0.00 0.00 2.90
1850 2167 3.451402 AACCCCCTACATCTTTTGTCC 57.549 47.619 0.00 0.00 39.87 4.02
1870 2187 3.056891 TCCTTGAACCGGAAAAATCATGC 60.057 43.478 9.46 0.00 0.00 4.06
1873 2190 1.548269 GAACCGGAAAAATCATGCCCA 59.452 47.619 9.46 0.00 0.00 5.36
1874 2191 1.638529 ACCGGAAAAATCATGCCCAA 58.361 45.000 9.46 0.00 0.00 4.12
1914 2232 9.434420 CTGAGATTAGATCCAGGAATTAACATC 57.566 37.037 0.00 0.00 0.00 3.06
1915 2233 8.378565 TGAGATTAGATCCAGGAATTAACATCC 58.621 37.037 0.00 1.60 37.22 3.51
1916 2234 8.280258 AGATTAGATCCAGGAATTAACATCCA 57.720 34.615 10.82 0.00 39.55 3.41
1918 2236 5.316158 AGATCCAGGAATTAACATCCAGG 57.684 43.478 12.15 12.15 43.18 4.45
1922 2240 6.091076 TCCAGGAATTAACATCCAGGAATT 57.909 37.500 16.55 0.00 46.22 2.17
1923 2241 7.219601 TCCAGGAATTAACATCCAGGAATTA 57.780 36.000 16.55 0.00 46.22 1.40
1924 2242 7.647827 TCCAGGAATTAACATCCAGGAATTAA 58.352 34.615 16.55 10.37 46.22 1.40
1925 2243 7.559897 TCCAGGAATTAACATCCAGGAATTAAC 59.440 37.037 16.55 1.92 46.22 2.01
1926 2244 7.561356 CCAGGAATTAACATCCAGGAATTAACT 59.439 37.037 12.78 1.96 44.24 2.24
1927 2245 8.624776 CAGGAATTAACATCCAGGAATTAACTC 58.375 37.037 10.23 9.34 39.55 3.01
2016 2334 3.148279 GCCACCGGATCCGAGACT 61.148 66.667 35.42 11.54 42.83 3.24
2022 2340 2.771639 CGGATCCGAGACTCGCCAA 61.772 63.158 30.62 7.27 42.83 4.52
2053 2371 1.668419 GCAGATTTAGACCATGCCGT 58.332 50.000 0.00 0.00 0.00 5.68
2246 2569 2.427095 GACCTGTGTTTGTCCAGCTTTT 59.573 45.455 0.00 0.00 0.00 2.27
2292 2615 3.849563 TGTCATGATGGATGATGCAGA 57.150 42.857 0.00 0.00 43.20 4.26
2298 2621 2.105993 TGATGGATGATGCAGAAGGAGG 59.894 50.000 0.00 0.00 0.00 4.30
2478 2872 3.059597 AGTTGCAACGAAATCTTCAGTCG 60.060 43.478 23.21 0.00 40.56 4.18
2489 2883 1.690283 CTTCAGTCGGCTGTCATGCG 61.690 60.000 18.04 0.00 43.05 4.73
2571 2973 5.897824 CCTAGTTATGTACTCCCTCCTTTCA 59.102 44.000 0.00 0.00 38.33 2.69
2622 3026 9.726232 TTAATATGAACTACGTACATGTGACTC 57.274 33.333 9.11 0.00 0.00 3.36
2623 3027 5.899120 ATGAACTACGTACATGTGACTCT 57.101 39.130 9.11 0.00 0.00 3.24
2624 3028 6.997239 ATGAACTACGTACATGTGACTCTA 57.003 37.500 9.11 0.00 0.00 2.43
2625 3029 6.806388 TGAACTACGTACATGTGACTCTAA 57.194 37.500 9.11 0.00 0.00 2.10
2626 3030 7.205737 TGAACTACGTACATGTGACTCTAAA 57.794 36.000 9.11 0.00 0.00 1.85
2627 3031 7.080099 TGAACTACGTACATGTGACTCTAAAC 58.920 38.462 9.11 0.00 0.00 2.01
2628 3032 6.814506 ACTACGTACATGTGACTCTAAACT 57.185 37.500 9.11 0.00 0.00 2.66
2629 3033 7.912056 ACTACGTACATGTGACTCTAAACTA 57.088 36.000 9.11 0.00 0.00 2.24
2630 3034 7.746929 ACTACGTACATGTGACTCTAAACTAC 58.253 38.462 9.11 0.00 0.00 2.73
2631 3035 5.625251 ACGTACATGTGACTCTAAACTACG 58.375 41.667 9.11 8.18 0.00 3.51
2632 3036 5.180117 ACGTACATGTGACTCTAAACTACGT 59.820 40.000 9.11 8.86 34.42 3.57
2633 3037 5.731723 CGTACATGTGACTCTAAACTACGTC 59.268 44.000 9.11 0.00 0.00 4.34
2634 3038 5.961396 ACATGTGACTCTAAACTACGTCT 57.039 39.130 0.00 0.00 0.00 4.18
2635 3039 7.201470 CGTACATGTGACTCTAAACTACGTCTA 60.201 40.741 9.11 0.00 0.00 2.59
2636 3040 7.627298 ACATGTGACTCTAAACTACGTCTAT 57.373 36.000 0.00 0.00 0.00 1.98
2637 3041 8.728337 ACATGTGACTCTAAACTACGTCTATA 57.272 34.615 0.00 0.00 0.00 1.31
2638 3042 9.339850 ACATGTGACTCTAAACTACGTCTATAT 57.660 33.333 0.00 0.00 0.00 0.86
2641 3045 9.822185 TGTGACTCTAAACTACGTCTATATACA 57.178 33.333 0.00 0.00 0.00 2.29
2684 3088 8.904099 ATTTATATTTAGGAACGAAGGGAGTG 57.096 34.615 0.00 0.00 0.00 3.51
2685 3089 2.467566 TTTAGGAACGAAGGGAGTGC 57.532 50.000 0.00 0.00 0.00 4.40
2686 3090 1.640917 TTAGGAACGAAGGGAGTGCT 58.359 50.000 0.00 0.00 0.00 4.40
2687 3091 2.519771 TAGGAACGAAGGGAGTGCTA 57.480 50.000 0.00 0.00 0.00 3.49
2691 3095 1.470098 GAACGAAGGGAGTGCTACGTA 59.530 52.381 0.00 0.00 33.76 3.57
2700 3104 3.819337 GGGAGTGCTACGTATGAGTATGA 59.181 47.826 0.00 0.00 0.00 2.15
2701 3105 4.320348 GGGAGTGCTACGTATGAGTATGAC 60.320 50.000 0.00 0.00 0.00 3.06
2724 3128 2.670148 GGCTCGGGGAGGACACATT 61.670 63.158 0.00 0.00 0.00 2.71
2737 3145 5.780793 GGAGGACACATTATGTAGGTAGGAT 59.219 44.000 0.00 0.00 43.56 3.24
2745 3153 8.811017 CACATTATGTAGGTAGGATCAGAGAAT 58.189 37.037 0.00 0.00 0.00 2.40
2765 3173 9.872684 AGAGAATGACCATGGAAATTGTATAAT 57.127 29.630 21.47 0.00 0.00 1.28
2804 3212 4.074970 TCAAACTCTTTGGATCAAGCTCC 58.925 43.478 0.00 0.00 40.98 4.70
2816 3224 5.189180 GGATCAAGCTCCAGTGTCTATTTT 58.811 41.667 0.00 0.00 35.24 1.82
2822 3230 3.691609 GCTCCAGTGTCTATTTTCCAAGG 59.308 47.826 0.00 0.00 0.00 3.61
2824 3232 5.165961 TCCAGTGTCTATTTTCCAAGGAG 57.834 43.478 0.00 0.00 0.00 3.69
2829 3237 5.649831 AGTGTCTATTTTCCAAGGAGCAATC 59.350 40.000 0.00 0.00 0.00 2.67
2864 3272 2.230025 GAGTACAGCTGCAACTCTCTCA 59.770 50.000 29.37 0.00 37.30 3.27
2871 3279 3.450096 AGCTGCAACTCTCTCATGTATCA 59.550 43.478 1.02 0.00 0.00 2.15
2886 3294 3.162666 TGTATCAAGACCAGACCTTCGT 58.837 45.455 0.00 0.00 0.00 3.85
2891 3299 2.600769 ACCAGACCTTCGTCGGCT 60.601 61.111 0.00 0.00 44.28 5.52
2894 3302 2.359602 AGACCTTCGTCGGCTCGA 60.360 61.111 0.00 0.00 44.28 4.04
2914 3322 3.334691 GACGAAAATGACCTGACATCCA 58.665 45.455 0.00 0.00 0.00 3.41
2916 3324 4.141287 ACGAAAATGACCTGACATCCAAA 58.859 39.130 0.00 0.00 0.00 3.28
2919 3327 5.410355 AAAATGACCTGACATCCAAATGG 57.590 39.130 0.00 0.00 37.19 3.16
2920 3328 1.838112 TGACCTGACATCCAAATGGC 58.162 50.000 0.00 0.00 41.74 4.40
2922 3330 0.038166 ACCTGACATCCAAATGGCGT 59.962 50.000 0.00 0.00 44.62 5.68
2923 3331 1.176527 CCTGACATCCAAATGGCGTT 58.823 50.000 0.00 0.00 44.62 4.84
2924 3332 1.545582 CCTGACATCCAAATGGCGTTT 59.454 47.619 0.00 0.00 44.62 3.60
2925 3333 2.029110 CCTGACATCCAAATGGCGTTTT 60.029 45.455 0.99 0.00 44.62 2.43
2926 3334 3.554752 CCTGACATCCAAATGGCGTTTTT 60.555 43.478 0.99 0.00 44.62 1.94
2929 3337 2.632512 ACATCCAAATGGCGTTTTTCCT 59.367 40.909 0.99 0.00 37.19 3.36
2930 3338 3.253230 CATCCAAATGGCGTTTTTCCTC 58.747 45.455 0.99 0.00 34.44 3.71
2931 3339 1.616374 TCCAAATGGCGTTTTTCCTCC 59.384 47.619 0.99 0.00 34.44 4.30
2939 3347 1.036707 CGTTTTTCCTCCCCTTTGCA 58.963 50.000 0.00 0.00 0.00 4.08
2943 3351 0.555769 TTTCCTCCCCTTTGCACTGT 59.444 50.000 0.00 0.00 0.00 3.55
2966 3374 0.316204 TTCTTCCGTTCCACGACTCC 59.684 55.000 0.00 0.00 46.05 3.85
2967 3375 1.443872 CTTCCGTTCCACGACTCCG 60.444 63.158 0.00 0.00 46.05 4.63
2972 3380 2.920912 TTCCACGACTCCGCCCTT 60.921 61.111 0.00 0.00 39.95 3.95
2975 3383 2.657237 CACGACTCCGCCCTTTCT 59.343 61.111 0.00 0.00 39.95 2.52
2987 3395 1.608283 GCCCTTTCTCTGCAAGTACGT 60.608 52.381 0.00 0.00 33.76 3.57
2988 3396 2.353406 GCCCTTTCTCTGCAAGTACGTA 60.353 50.000 0.00 0.00 33.76 3.57
2989 3397 3.251571 CCCTTTCTCTGCAAGTACGTAC 58.748 50.000 18.10 18.10 33.76 3.67
2990 3398 3.305813 CCCTTTCTCTGCAAGTACGTACA 60.306 47.826 26.55 5.98 33.76 2.90
2991 3399 3.921021 CCTTTCTCTGCAAGTACGTACAG 59.079 47.826 26.55 18.88 33.76 2.74
2992 3400 4.547532 CTTTCTCTGCAAGTACGTACAGT 58.452 43.478 26.55 11.93 33.76 3.55
2993 3401 5.335426 CCTTTCTCTGCAAGTACGTACAGTA 60.335 44.000 26.55 16.52 33.76 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.254492 GTGAAAAAGAGCACTAGGTAGGG 58.746 47.826 0.00 0.00 32.44 3.53
17 18 4.254492 GGTGAAAAAGAGCACTAGGTAGG 58.746 47.826 0.00 0.00 35.43 3.18
18 19 4.020128 AGGGTGAAAAAGAGCACTAGGTAG 60.020 45.833 0.00 0.00 35.43 3.18
19 20 3.908103 AGGGTGAAAAAGAGCACTAGGTA 59.092 43.478 0.00 0.00 35.43 3.08
20 21 2.711547 AGGGTGAAAAAGAGCACTAGGT 59.288 45.455 0.00 0.00 35.43 3.08
59 60 7.872138 AGTTATAACCAAAGAATCATCCAGGA 58.128 34.615 12.05 0.00 0.00 3.86
67 68 7.755373 GCAACCAAGAGTTATAACCAAAGAATC 59.245 37.037 12.05 1.71 36.18 2.52
80 81 6.097554 TGGAAAATTCAAGCAACCAAGAGTTA 59.902 34.615 0.00 0.00 36.18 2.24
84 85 4.947645 CTGGAAAATTCAAGCAACCAAGA 58.052 39.130 0.00 0.00 0.00 3.02
120 121 1.167851 CCGTCAACCAATGATGCAGT 58.832 50.000 0.00 0.00 42.68 4.40
239 241 2.627945 GATACTGTCAAACATCGCCCA 58.372 47.619 0.00 0.00 0.00 5.36
254 256 7.639062 AAAGAGGACATGGATTATGGATACT 57.361 36.000 0.00 0.00 41.25 2.12
296 299 7.761704 GGATTCCTTTTAGCAGGATTTTCTTTC 59.238 37.037 0.00 0.00 42.89 2.62
297 300 7.455953 AGGATTCCTTTTAGCAGGATTTTCTTT 59.544 33.333 0.00 0.00 42.89 2.52
327 491 0.693622 TAGACATTGGTTGGGGCGAA 59.306 50.000 0.00 0.00 0.00 4.70
332 496 2.332063 AGCGATAGACATTGGTTGGG 57.668 50.000 0.00 0.00 39.76 4.12
428 595 2.105649 GGCTCTCTGGGGAAATAAGAGG 59.894 54.545 0.00 0.00 38.38 3.69
439 606 3.375443 TACCGAGGGGCTCTCTGGG 62.375 68.421 23.05 16.05 40.30 4.45
445 612 0.175989 CAGTTTCTACCGAGGGGCTC 59.824 60.000 0.00 0.00 36.48 4.70
447 614 1.221021 CCAGTTTCTACCGAGGGGC 59.779 63.158 0.00 0.00 36.48 5.80
452 619 6.376018 CCCATTTTATTTCCAGTTTCTACCGA 59.624 38.462 0.00 0.00 0.00 4.69
454 621 7.476540 ACCCATTTTATTTCCAGTTTCTACC 57.523 36.000 0.00 0.00 0.00 3.18
461 628 3.426615 TGCGACCCATTTTATTTCCAGT 58.573 40.909 0.00 0.00 0.00 4.00
465 632 4.527564 CGAGATGCGACCCATTTTATTTC 58.472 43.478 0.00 0.00 44.57 2.17
476 643 1.953138 CAGATGCCGAGATGCGACC 60.953 63.158 0.00 0.00 44.57 4.79
478 645 0.961753 ATACAGATGCCGAGATGCGA 59.038 50.000 0.00 0.00 44.57 5.10
479 646 2.095008 AGTATACAGATGCCGAGATGCG 60.095 50.000 5.50 0.00 40.47 4.73
485 652 4.161565 AGGACAAAAGTATACAGATGCCGA 59.838 41.667 5.50 0.00 0.00 5.54
486 653 4.442706 AGGACAAAAGTATACAGATGCCG 58.557 43.478 5.50 0.00 0.00 5.69
488 655 6.763610 AGCTAAGGACAAAAGTATACAGATGC 59.236 38.462 5.50 0.00 0.00 3.91
489 656 8.723942 AAGCTAAGGACAAAAGTATACAGATG 57.276 34.615 5.50 3.20 0.00 2.90
490 657 9.819267 GTAAGCTAAGGACAAAAGTATACAGAT 57.181 33.333 5.50 0.00 0.00 2.90
492 659 7.222224 CGGTAAGCTAAGGACAAAAGTATACAG 59.778 40.741 5.50 0.00 0.00 2.74
494 661 6.478016 CCGGTAAGCTAAGGACAAAAGTATAC 59.522 42.308 0.00 0.00 0.00 1.47
495 662 6.155049 ACCGGTAAGCTAAGGACAAAAGTATA 59.845 38.462 4.49 0.00 0.00 1.47
496 663 5.046087 ACCGGTAAGCTAAGGACAAAAGTAT 60.046 40.000 4.49 0.00 0.00 2.12
497 664 4.284234 ACCGGTAAGCTAAGGACAAAAGTA 59.716 41.667 4.49 0.00 0.00 2.24
498 665 3.072038 ACCGGTAAGCTAAGGACAAAAGT 59.928 43.478 4.49 0.00 0.00 2.66
499 666 3.671716 ACCGGTAAGCTAAGGACAAAAG 58.328 45.455 4.49 0.00 0.00 2.27
510 677 4.457949 CCAAAAGTTATTGACCGGTAAGCT 59.542 41.667 7.34 0.00 31.84 3.74
516 683 4.839668 TGTTCCAAAAGTTATTGACCGG 57.160 40.909 0.00 0.00 31.84 5.28
517 684 9.498307 GTATAATGTTCCAAAAGTTATTGACCG 57.502 33.333 0.00 0.00 31.84 4.79
518 685 9.797556 GGTATAATGTTCCAAAAGTTATTGACC 57.202 33.333 0.00 0.00 31.84 4.02
522 689 9.869757 GCAAGGTATAATGTTCCAAAAGTTATT 57.130 29.630 0.00 0.00 0.00 1.40
524 691 8.644374 AGCAAGGTATAATGTTCCAAAAGTTA 57.356 30.769 0.00 0.00 0.00 2.24
525 692 7.451566 AGAGCAAGGTATAATGTTCCAAAAGTT 59.548 33.333 0.00 0.00 0.00 2.66
526 693 6.948309 AGAGCAAGGTATAATGTTCCAAAAGT 59.052 34.615 0.00 0.00 0.00 2.66
527 694 7.253422 CAGAGCAAGGTATAATGTTCCAAAAG 58.747 38.462 0.00 0.00 0.00 2.27
529 696 5.125417 GCAGAGCAAGGTATAATGTTCCAAA 59.875 40.000 0.00 0.00 0.00 3.28
532 699 4.199310 TGCAGAGCAAGGTATAATGTTCC 58.801 43.478 0.00 0.00 34.76 3.62
533 700 5.818136 TTGCAGAGCAAGGTATAATGTTC 57.182 39.130 0.00 0.00 43.99 3.18
546 713 1.075482 CTTCCCCCTTTGCAGAGCA 59.925 57.895 0.00 0.00 36.47 4.26
547 714 0.679321 CTCTTCCCCCTTTGCAGAGC 60.679 60.000 0.00 0.00 0.00 4.09
548 715 0.987294 TCTCTTCCCCCTTTGCAGAG 59.013 55.000 0.00 0.00 33.56 3.35
549 716 0.693049 GTCTCTTCCCCCTTTGCAGA 59.307 55.000 0.00 0.00 0.00 4.26
550 717 0.401738 TGTCTCTTCCCCCTTTGCAG 59.598 55.000 0.00 0.00 0.00 4.41
551 718 1.004745 GATGTCTCTTCCCCCTTTGCA 59.995 52.381 0.00 0.00 0.00 4.08
552 719 1.683319 GGATGTCTCTTCCCCCTTTGC 60.683 57.143 0.00 0.00 0.00 3.68
553 720 1.918957 AGGATGTCTCTTCCCCCTTTG 59.081 52.381 0.00 0.00 33.45 2.77
555 722 2.319438 ACTAGGATGTCTCTTCCCCCTT 59.681 50.000 0.00 0.00 33.45 3.95
556 723 1.940957 ACTAGGATGTCTCTTCCCCCT 59.059 52.381 0.00 0.00 33.45 4.79
557 724 2.480642 ACTAGGATGTCTCTTCCCCC 57.519 55.000 0.00 0.00 33.45 5.40
558 725 4.548669 AGTTACTAGGATGTCTCTTCCCC 58.451 47.826 0.00 0.00 33.45 4.81
559 726 5.202004 TGAGTTACTAGGATGTCTCTTCCC 58.798 45.833 0.00 0.00 33.45 3.97
560 727 6.777213 TTGAGTTACTAGGATGTCTCTTCC 57.223 41.667 0.00 0.00 0.00 3.46
561 728 9.660180 AAAATTGAGTTACTAGGATGTCTCTTC 57.340 33.333 0.00 0.00 0.00 2.87
562 729 9.660180 GAAAATTGAGTTACTAGGATGTCTCTT 57.340 33.333 0.00 0.00 0.00 2.85
563 730 9.041354 AGAAAATTGAGTTACTAGGATGTCTCT 57.959 33.333 0.00 0.00 0.00 3.10
564 731 9.660180 AAGAAAATTGAGTTACTAGGATGTCTC 57.340 33.333 0.00 0.00 0.00 3.36
646 813 5.770162 ACCAACATCAACCTAGGAAAGAAAG 59.230 40.000 17.98 9.36 0.00 2.62
649 816 4.993705 ACCAACATCAACCTAGGAAAGA 57.006 40.909 17.98 10.33 0.00 2.52
734 1030 6.886459 CCAAAAAGGAGAATTAGATGTGGAGA 59.114 38.462 0.00 0.00 41.22 3.71
742 1038 6.561294 ACATTCCCCAAAAAGGAGAATTAGA 58.439 36.000 0.00 0.00 41.22 2.10
753 1049 5.649831 CCTCAAAACAAACATTCCCCAAAAA 59.350 36.000 0.00 0.00 0.00 1.94
758 1054 4.681074 TTCCTCAAAACAAACATTCCCC 57.319 40.909 0.00 0.00 0.00 4.81
759 1055 6.345298 TCTTTTCCTCAAAACAAACATTCCC 58.655 36.000 0.00 0.00 0.00 3.97
790 1086 2.884639 GAGTTTCTTTTAGGGTGCAGCA 59.115 45.455 19.06 0.00 0.00 4.41
791 1087 2.229062 GGAGTTTCTTTTAGGGTGCAGC 59.771 50.000 7.55 7.55 0.00 5.25
792 1088 3.503748 CAGGAGTTTCTTTTAGGGTGCAG 59.496 47.826 0.00 0.00 0.00 4.41
793 1089 3.117663 ACAGGAGTTTCTTTTAGGGTGCA 60.118 43.478 0.00 0.00 0.00 4.57
858 1156 0.677731 CGCATTTGCTCCTCTTCCCA 60.678 55.000 0.51 0.00 39.32 4.37
928 1226 2.616001 GGGTGGCCTATTTAACGACACA 60.616 50.000 3.32 0.00 0.00 3.72
966 1264 1.729284 TCCTGCGATTTTCGGGTTAC 58.271 50.000 0.00 0.00 40.84 2.50
977 1275 4.074970 AGTTCAGTGATTTTTCCTGCGAT 58.925 39.130 0.00 0.00 0.00 4.58
980 1278 6.150140 ACTCATAGTTCAGTGATTTTTCCTGC 59.850 38.462 0.00 0.00 0.00 4.85
1716 2014 4.821589 CCGGAGAACAGCCTCGGC 62.822 72.222 0.00 0.00 42.33 5.54
1758 2056 1.233285 GGCACATCATCCGCCTCATC 61.233 60.000 0.00 0.00 42.78 2.92
1832 2130 3.010138 TCAAGGACAAAAGATGTAGGGGG 59.990 47.826 0.00 0.00 44.12 5.40
1836 2134 4.154195 CCGGTTCAAGGACAAAAGATGTAG 59.846 45.833 0.00 0.00 44.12 2.74
1837 2135 4.069304 CCGGTTCAAGGACAAAAGATGTA 58.931 43.478 0.00 0.00 44.12 2.29
1842 2140 4.379339 TTTTCCGGTTCAAGGACAAAAG 57.621 40.909 0.00 0.00 37.53 2.27
1843 2141 4.803098 TTTTTCCGGTTCAAGGACAAAA 57.197 36.364 0.00 0.00 35.32 2.44
1850 2167 3.253230 GGCATGATTTTTCCGGTTCAAG 58.747 45.455 0.00 0.00 0.00 3.02
1870 2187 1.068333 CAGATGAAAACTGCGGTTGGG 60.068 52.381 12.68 0.00 35.63 4.12
1873 2190 3.126001 TCTCAGATGAAAACTGCGGTT 57.874 42.857 4.68 4.68 36.57 4.44
1874 2191 2.839486 TCTCAGATGAAAACTGCGGT 57.161 45.000 0.00 0.00 36.57 5.68
1914 2232 7.156876 TGCATTACAAAGAGTTAATTCCTGG 57.843 36.000 0.00 0.00 0.00 4.45
1915 2233 7.253422 CCTGCATTACAAAGAGTTAATTCCTG 58.747 38.462 0.00 0.00 0.00 3.86
1916 2234 6.127619 GCCTGCATTACAAAGAGTTAATTCCT 60.128 38.462 0.00 0.00 0.00 3.36
1918 2236 6.036470 GGCCTGCATTACAAAGAGTTAATTC 58.964 40.000 0.00 0.00 0.00 2.17
1919 2237 5.480073 TGGCCTGCATTACAAAGAGTTAATT 59.520 36.000 3.32 0.00 0.00 1.40
1922 2240 3.756434 GTGGCCTGCATTACAAAGAGTTA 59.244 43.478 3.32 0.00 0.00 2.24
1923 2241 2.558359 GTGGCCTGCATTACAAAGAGTT 59.442 45.455 3.32 0.00 0.00 3.01
1924 2242 2.162681 GTGGCCTGCATTACAAAGAGT 58.837 47.619 3.32 0.00 0.00 3.24
1925 2243 1.474077 GGTGGCCTGCATTACAAAGAG 59.526 52.381 3.32 0.00 0.00 2.85
1926 2244 1.544724 GGTGGCCTGCATTACAAAGA 58.455 50.000 3.32 0.00 0.00 2.52
1927 2245 0.532115 GGGTGGCCTGCATTACAAAG 59.468 55.000 3.32 0.00 0.00 2.77
2016 2334 1.153568 CCTCGATCTGCTTTGGCGA 60.154 57.895 0.00 0.00 42.25 5.54
2022 2340 2.706339 AAATCTGCCTCGATCTGCTT 57.294 45.000 0.00 0.00 0.00 3.91
2246 2569 2.161410 GCATCGCACACAACAAAGGATA 59.839 45.455 0.00 0.00 0.00 2.59
2292 2615 8.648693 ACGCTAGAATATATACAAAACCTCCTT 58.351 33.333 0.00 0.00 0.00 3.36
2298 2621 7.101993 ACGCACGCTAGAATATATACAAAAC 57.898 36.000 0.00 0.00 0.00 2.43
2369 2698 1.599542 CGAAAGGCACATAAGCTAGGC 59.400 52.381 0.00 0.00 34.17 3.93
2478 2872 0.723981 GAGAAACTCGCATGACAGCC 59.276 55.000 0.00 0.00 0.00 4.85
2549 2950 9.496710 TTTATGAAAGGAGGGAGTACATAACTA 57.503 33.333 0.00 0.00 39.07 2.24
2550 2951 7.989947 TTATGAAAGGAGGGAGTACATAACT 57.010 36.000 0.00 0.00 42.80 2.24
2600 3004 6.997239 AGAGTCACATGTACGTAGTTCATA 57.003 37.500 0.00 0.00 46.53 2.15
2602 3006 6.806388 TTAGAGTCACATGTACGTAGTTCA 57.194 37.500 0.00 0.00 37.78 3.18
2603 3007 7.303998 AGTTTAGAGTCACATGTACGTAGTTC 58.696 38.462 0.00 0.00 37.78 3.01
2604 3008 7.211966 AGTTTAGAGTCACATGTACGTAGTT 57.788 36.000 0.00 0.00 37.78 2.24
2606 3010 6.898716 CGTAGTTTAGAGTCACATGTACGTAG 59.101 42.308 0.00 0.00 0.00 3.51
2607 3011 6.368791 ACGTAGTTTAGAGTCACATGTACGTA 59.631 38.462 11.93 0.00 37.78 3.57
2608 3012 5.180117 ACGTAGTTTAGAGTCACATGTACGT 59.820 40.000 8.70 8.70 37.78 3.57
2609 3013 5.625251 ACGTAGTTTAGAGTCACATGTACG 58.375 41.667 0.00 2.73 37.78 3.67
2658 3062 9.991906 CACTCCCTTCGTTCCTAAATATAAATA 57.008 33.333 0.00 0.00 0.00 1.40
2659 3063 7.444487 GCACTCCCTTCGTTCCTAAATATAAAT 59.556 37.037 0.00 0.00 0.00 1.40
2660 3064 6.764560 GCACTCCCTTCGTTCCTAAATATAAA 59.235 38.462 0.00 0.00 0.00 1.40
2661 3065 6.099269 AGCACTCCCTTCGTTCCTAAATATAA 59.901 38.462 0.00 0.00 0.00 0.98
2662 3066 5.601313 AGCACTCCCTTCGTTCCTAAATATA 59.399 40.000 0.00 0.00 0.00 0.86
2663 3067 4.409247 AGCACTCCCTTCGTTCCTAAATAT 59.591 41.667 0.00 0.00 0.00 1.28
2664 3068 3.773119 AGCACTCCCTTCGTTCCTAAATA 59.227 43.478 0.00 0.00 0.00 1.40
2665 3069 2.572104 AGCACTCCCTTCGTTCCTAAAT 59.428 45.455 0.00 0.00 0.00 1.40
2666 3070 1.975680 AGCACTCCCTTCGTTCCTAAA 59.024 47.619 0.00 0.00 0.00 1.85
2667 3071 1.640917 AGCACTCCCTTCGTTCCTAA 58.359 50.000 0.00 0.00 0.00 2.69
2668 3072 2.097825 GTAGCACTCCCTTCGTTCCTA 58.902 52.381 0.00 0.00 0.00 2.94
2669 3073 0.896226 GTAGCACTCCCTTCGTTCCT 59.104 55.000 0.00 0.00 0.00 3.36
2670 3074 0.458025 CGTAGCACTCCCTTCGTTCC 60.458 60.000 0.00 0.00 0.00 3.62
2671 3075 0.243095 ACGTAGCACTCCCTTCGTTC 59.757 55.000 0.00 0.00 35.74 3.95
2672 3076 1.538047 TACGTAGCACTCCCTTCGTT 58.462 50.000 0.00 0.00 39.16 3.85
2673 3077 1.404391 CATACGTAGCACTCCCTTCGT 59.596 52.381 0.08 0.00 40.91 3.85
2674 3078 1.674441 TCATACGTAGCACTCCCTTCG 59.326 52.381 0.08 0.00 0.00 3.79
2675 3079 2.688958 ACTCATACGTAGCACTCCCTTC 59.311 50.000 0.08 0.00 0.00 3.46
2676 3080 2.736347 ACTCATACGTAGCACTCCCTT 58.264 47.619 0.08 0.00 0.00 3.95
2677 3081 2.438800 ACTCATACGTAGCACTCCCT 57.561 50.000 0.08 0.00 0.00 4.20
2678 3082 3.819337 TCATACTCATACGTAGCACTCCC 59.181 47.826 0.08 0.00 0.00 4.30
2679 3083 4.275196 TGTCATACTCATACGTAGCACTCC 59.725 45.833 0.08 0.00 0.00 3.85
2680 3084 5.206299 GTGTCATACTCATACGTAGCACTC 58.794 45.833 0.08 0.00 0.00 3.51
2681 3085 4.638865 TGTGTCATACTCATACGTAGCACT 59.361 41.667 0.08 0.00 0.00 4.40
2682 3086 4.916870 TGTGTCATACTCATACGTAGCAC 58.083 43.478 0.08 0.04 0.00 4.40
2683 3087 5.507315 CCATGTGTCATACTCATACGTAGCA 60.507 44.000 0.08 0.00 31.83 3.49
2684 3088 4.917998 CCATGTGTCATACTCATACGTAGC 59.082 45.833 0.08 0.00 31.83 3.58
2685 3089 4.917998 GCCATGTGTCATACTCATACGTAG 59.082 45.833 0.08 0.00 31.83 3.51
2686 3090 4.583073 AGCCATGTGTCATACTCATACGTA 59.417 41.667 0.00 0.00 31.83 3.57
2687 3091 3.384789 AGCCATGTGTCATACTCATACGT 59.615 43.478 0.00 0.00 31.83 3.57
2691 3095 2.224137 CCGAGCCATGTGTCATACTCAT 60.224 50.000 0.00 0.00 33.10 2.90
2700 3104 3.402681 CCTCCCCGAGCCATGTGT 61.403 66.667 0.00 0.00 0.00 3.72
2701 3105 3.083349 TCCTCCCCGAGCCATGTG 61.083 66.667 0.00 0.00 0.00 3.21
2724 3128 6.948886 GGTCATTCTCTGATCCTACCTACATA 59.051 42.308 0.00 0.00 35.97 2.29
2737 3145 5.573219 ACAATTTCCATGGTCATTCTCTGA 58.427 37.500 12.58 0.00 0.00 3.27
2745 3153 5.240623 GCGGATTATACAATTTCCATGGTCA 59.759 40.000 12.58 0.00 0.00 4.02
2804 3212 4.326826 TGCTCCTTGGAAAATAGACACTG 58.673 43.478 0.00 0.00 0.00 3.66
2816 3224 3.507162 TTGAGTTGATTGCTCCTTGGA 57.493 42.857 0.00 0.00 32.31 3.53
2822 3230 4.074970 TCCTCCTTTTGAGTTGATTGCTC 58.925 43.478 0.00 0.00 39.65 4.26
2824 3232 3.823304 ACTCCTCCTTTTGAGTTGATTGC 59.177 43.478 0.00 0.00 38.67 3.56
2829 3237 3.748568 GCTGTACTCCTCCTTTTGAGTTG 59.251 47.826 0.00 0.00 41.80 3.16
2843 3251 2.230025 TGAGAGAGTTGCAGCTGTACTC 59.770 50.000 28.87 28.87 38.82 2.59
2850 3258 3.790091 TGATACATGAGAGAGTTGCAGC 58.210 45.455 0.00 0.00 0.00 5.25
2864 3272 3.769844 ACGAAGGTCTGGTCTTGATACAT 59.230 43.478 0.00 0.00 0.00 2.29
2871 3279 1.965219 CCGACGAAGGTCTGGTCTT 59.035 57.895 0.00 0.00 41.16 3.01
2886 3294 0.734942 GGTCATTTTCGTCGAGCCGA 60.735 55.000 0.00 0.00 34.52 5.54
2891 3299 2.804697 TGTCAGGTCATTTTCGTCGA 57.195 45.000 0.00 0.00 0.00 4.20
2894 3302 3.417069 TGGATGTCAGGTCATTTTCGT 57.583 42.857 0.00 0.00 0.00 3.85
2914 3322 0.973632 GGGGAGGAAAAACGCCATTT 59.026 50.000 0.00 0.00 38.66 2.32
2916 3324 0.114364 AAGGGGAGGAAAAACGCCAT 59.886 50.000 0.00 0.00 40.76 4.40
2919 3327 0.319555 GCAAAGGGGAGGAAAAACGC 60.320 55.000 0.00 0.00 0.00 4.84
2920 3328 1.036707 TGCAAAGGGGAGGAAAAACG 58.963 50.000 0.00 0.00 0.00 3.60
2922 3330 2.038659 CAGTGCAAAGGGGAGGAAAAA 58.961 47.619 0.00 0.00 0.00 1.94
2923 3331 1.063266 ACAGTGCAAAGGGGAGGAAAA 60.063 47.619 0.00 0.00 0.00 2.29
2924 3332 0.555769 ACAGTGCAAAGGGGAGGAAA 59.444 50.000 0.00 0.00 0.00 3.13
2925 3333 0.110486 GACAGTGCAAAGGGGAGGAA 59.890 55.000 0.00 0.00 0.00 3.36
2926 3334 0.768221 AGACAGTGCAAAGGGGAGGA 60.768 55.000 0.00 0.00 0.00 3.71
2929 3337 2.091885 AGAAAAGACAGTGCAAAGGGGA 60.092 45.455 0.00 0.00 0.00 4.81
2930 3338 2.310538 AGAAAAGACAGTGCAAAGGGG 58.689 47.619 0.00 0.00 0.00 4.79
2931 3339 3.243535 GGAAGAAAAGACAGTGCAAAGGG 60.244 47.826 0.00 0.00 0.00 3.95
2939 3347 3.203716 GTGGAACGGAAGAAAAGACAGT 58.796 45.455 0.00 0.00 0.00 3.55
2966 3374 1.079503 GTACTTGCAGAGAAAGGGCG 58.920 55.000 3.37 0.00 0.00 6.13
2967 3375 1.079503 CGTACTTGCAGAGAAAGGGC 58.920 55.000 3.37 0.00 0.00 5.19
2972 3380 4.377738 CGTACTGTACGTACTTGCAGAGAA 60.378 45.833 27.27 6.24 45.05 2.87
2975 3383 3.460362 CGTACTGTACGTACTTGCAGA 57.540 47.619 27.27 4.24 45.05 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.