Multiple sequence alignment - TraesCS6B01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G257000 chr6B 100.000 2732 0 0 1 2732 461395678 461392947 0.000000e+00 5046
1 TraesCS6B01G257000 chr6B 88.036 769 55 19 996 1731 461961868 461961104 0.000000e+00 876
2 TraesCS6B01G257000 chr6B 85.140 895 80 32 873 1731 461848380 461847503 0.000000e+00 867
3 TraesCS6B01G257000 chr6B 98.201 389 6 1 2 390 688742312 688742699 0.000000e+00 678
4 TraesCS6B01G257000 chr6A 92.824 1700 73 24 464 2126 421463281 421464968 0.000000e+00 2418
5 TraesCS6B01G257000 chr6A 84.950 897 83 28 873 1734 421225949 421226828 0.000000e+00 861
6 TraesCS6B01G257000 chr6A 88.468 607 47 10 2141 2732 421466615 421467213 0.000000e+00 712
7 TraesCS6B01G257000 chr6A 93.008 472 22 5 390 852 421367321 421367790 0.000000e+00 678
8 TraesCS6B01G257000 chr6D 91.492 1763 68 26 992 2732 296993563 296991861 0.000000e+00 2350
9 TraesCS6B01G257000 chr6D 89.169 1191 95 22 560 1731 297407827 297406652 0.000000e+00 1454
10 TraesCS6B01G257000 chr6D 88.691 1123 88 26 629 1731 297490279 297489176 0.000000e+00 1334
11 TraesCS6B01G257000 chr6D 88.036 769 77 9 971 1731 298399349 298398588 0.000000e+00 896
12 TraesCS6B01G257000 chr6D 85.379 896 75 32 873 1734 298207396 298206523 0.000000e+00 878
13 TraesCS6B01G257000 chr6D 95.636 275 10 2 677 950 296993833 296993560 8.980000e-120 440
14 TraesCS6B01G257000 chr6D 93.515 293 18 1 390 681 296994334 296994042 4.180000e-118 435
15 TraesCS6B01G257000 chr6D 90.438 251 16 3 390 635 297514298 297514051 9.440000e-85 324
16 TraesCS6B01G257000 chr6D 93.893 131 8 0 390 520 297429165 297429035 5.970000e-47 198
17 TraesCS6B01G257000 chrUn 98.205 390 6 1 1 390 15730722 15730334 0.000000e+00 680
18 TraesCS6B01G257000 chrUn 98.205 390 6 1 1 390 424592570 424592958 0.000000e+00 680
19 TraesCS6B01G257000 chrUn 98.201 389 6 1 1 389 15433551 15433938 0.000000e+00 678
20 TraesCS6B01G257000 chrUn 98.201 389 6 1 1 389 349001335 349000948 0.000000e+00 678
21 TraesCS6B01G257000 chrUn 98.201 389 6 1 1 389 350319084 350319471 0.000000e+00 678
22 TraesCS6B01G257000 chrUn 98.201 389 6 1 1 389 393677824 393677437 0.000000e+00 678
23 TraesCS6B01G257000 chr3A 97.954 391 7 1 1 390 610445719 610446109 0.000000e+00 676
24 TraesCS6B01G257000 chr1B 98.191 387 5 2 1 387 231334420 231334036 0.000000e+00 675


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G257000 chr6B 461392947 461395678 2731 True 5046 5046 100.000000 1 2732 1 chr6B.!!$R1 2731
1 TraesCS6B01G257000 chr6B 461961104 461961868 764 True 876 876 88.036000 996 1731 1 chr6B.!!$R3 735
2 TraesCS6B01G257000 chr6B 461847503 461848380 877 True 867 867 85.140000 873 1731 1 chr6B.!!$R2 858
3 TraesCS6B01G257000 chr6A 421463281 421467213 3932 False 1565 2418 90.646000 464 2732 2 chr6A.!!$F3 2268
4 TraesCS6B01G257000 chr6A 421225949 421226828 879 False 861 861 84.950000 873 1734 1 chr6A.!!$F1 861
5 TraesCS6B01G257000 chr6D 297406652 297407827 1175 True 1454 1454 89.169000 560 1731 1 chr6D.!!$R1 1171
6 TraesCS6B01G257000 chr6D 297489176 297490279 1103 True 1334 1334 88.691000 629 1731 1 chr6D.!!$R3 1102
7 TraesCS6B01G257000 chr6D 296991861 296994334 2473 True 1075 2350 93.547667 390 2732 3 chr6D.!!$R7 2342
8 TraesCS6B01G257000 chr6D 298398588 298399349 761 True 896 896 88.036000 971 1731 1 chr6D.!!$R6 760
9 TraesCS6B01G257000 chr6D 298206523 298207396 873 True 878 878 85.379000 873 1734 1 chr6D.!!$R5 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.107017 AGGCCGGGTGATCTTTGATG 60.107 55.0 2.18 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2417 0.478072 TCACTGGGGAAAGCACACAT 59.522 50.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.213518 TCATAAAAGTGTTTCATCTCCTATGC 57.786 34.615 0.00 0.00 0.00 3.14
46 47 7.828717 TCATAAAAGTGTTTCATCTCCTATGCA 59.171 33.333 0.00 0.00 0.00 3.96
47 48 6.506500 AAAAGTGTTTCATCTCCTATGCAG 57.493 37.500 0.00 0.00 0.00 4.41
48 49 4.148128 AGTGTTTCATCTCCTATGCAGG 57.852 45.455 0.00 0.00 44.17 4.85
49 50 3.521126 AGTGTTTCATCTCCTATGCAGGT 59.479 43.478 0.00 0.00 43.18 4.00
50 51 4.716784 AGTGTTTCATCTCCTATGCAGGTA 59.283 41.667 0.00 0.00 43.18 3.08
51 52 5.189736 AGTGTTTCATCTCCTATGCAGGTAA 59.810 40.000 0.00 0.00 43.18 2.85
52 53 6.058183 GTGTTTCATCTCCTATGCAGGTAAT 58.942 40.000 0.00 0.00 43.18 1.89
53 54 6.543831 GTGTTTCATCTCCTATGCAGGTAATT 59.456 38.462 0.00 0.00 43.18 1.40
54 55 6.767902 TGTTTCATCTCCTATGCAGGTAATTC 59.232 38.462 0.00 0.00 43.18 2.17
55 56 6.499106 TTCATCTCCTATGCAGGTAATTCA 57.501 37.500 0.00 0.00 43.18 2.57
56 57 6.692849 TCATCTCCTATGCAGGTAATTCAT 57.307 37.500 0.00 0.00 43.18 2.57
57 58 7.797121 TCATCTCCTATGCAGGTAATTCATA 57.203 36.000 0.00 0.00 43.18 2.15
58 59 8.384693 TCATCTCCTATGCAGGTAATTCATAT 57.615 34.615 0.00 0.00 43.18 1.78
59 60 9.492730 TCATCTCCTATGCAGGTAATTCATATA 57.507 33.333 0.00 0.00 43.18 0.86
62 63 8.206867 TCTCCTATGCAGGTAATTCATATATGC 58.793 37.037 7.92 0.00 43.18 3.14
63 64 8.094284 TCCTATGCAGGTAATTCATATATGCT 57.906 34.615 7.92 0.00 43.18 3.79
64 65 8.206867 TCCTATGCAGGTAATTCATATATGCTC 58.793 37.037 7.92 0.00 43.18 4.26
65 66 6.915544 ATGCAGGTAATTCATATATGCTCG 57.084 37.500 7.92 0.00 32.17 5.03
66 67 4.631377 TGCAGGTAATTCATATATGCTCGC 59.369 41.667 7.92 5.82 32.17 5.03
67 68 4.259970 GCAGGTAATTCATATATGCTCGCG 60.260 45.833 7.92 0.00 0.00 5.87
68 69 5.102313 CAGGTAATTCATATATGCTCGCGA 58.898 41.667 9.26 9.26 0.00 5.87
69 70 5.750547 CAGGTAATTCATATATGCTCGCGAT 59.249 40.000 10.36 0.00 0.00 4.58
70 71 5.750547 AGGTAATTCATATATGCTCGCGATG 59.249 40.000 10.36 2.69 0.00 3.84
71 72 5.050769 GGTAATTCATATATGCTCGCGATGG 60.051 44.000 10.36 0.00 0.00 3.51
72 73 1.926561 TCATATATGCTCGCGATGGC 58.073 50.000 10.36 11.92 0.00 4.40
73 74 1.478105 TCATATATGCTCGCGATGGCT 59.522 47.619 19.39 9.05 36.88 4.75
74 75 1.857217 CATATATGCTCGCGATGGCTC 59.143 52.381 19.39 4.14 36.88 4.70
75 76 0.173481 TATATGCTCGCGATGGCTCC 59.827 55.000 19.39 1.81 36.88 4.70
76 77 2.825726 ATATGCTCGCGATGGCTCCG 62.826 60.000 19.39 3.52 36.88 4.63
78 79 4.266070 GCTCGCGATGGCTCCGTA 62.266 66.667 10.36 0.00 36.88 4.02
79 80 2.645567 CTCGCGATGGCTCCGTAT 59.354 61.111 10.36 0.00 36.88 3.06
80 81 1.730902 CTCGCGATGGCTCCGTATG 60.731 63.158 10.36 0.00 36.88 2.39
81 82 2.027605 CGCGATGGCTCCGTATGT 59.972 61.111 0.00 0.00 36.88 2.29
82 83 2.302952 CGCGATGGCTCCGTATGTG 61.303 63.158 0.00 0.00 36.88 3.21
83 84 1.067416 GCGATGGCTCCGTATGTGA 59.933 57.895 0.00 0.00 35.83 3.58
84 85 0.319900 GCGATGGCTCCGTATGTGAT 60.320 55.000 0.00 0.00 35.83 3.06
85 86 1.702886 CGATGGCTCCGTATGTGATC 58.297 55.000 0.00 0.00 0.00 2.92
86 87 1.270826 CGATGGCTCCGTATGTGATCT 59.729 52.381 0.00 0.00 0.00 2.75
87 88 2.488153 CGATGGCTCCGTATGTGATCTA 59.512 50.000 0.00 0.00 0.00 1.98
88 89 3.129462 CGATGGCTCCGTATGTGATCTAT 59.871 47.826 0.00 0.00 0.00 1.98
89 90 4.677584 GATGGCTCCGTATGTGATCTATC 58.322 47.826 0.00 0.00 0.00 2.08
90 91 2.826128 TGGCTCCGTATGTGATCTATCC 59.174 50.000 0.00 0.00 0.00 2.59
91 92 3.093057 GGCTCCGTATGTGATCTATCCT 58.907 50.000 0.00 0.00 0.00 3.24
92 93 3.119316 GGCTCCGTATGTGATCTATCCTG 60.119 52.174 0.00 0.00 0.00 3.86
93 94 3.674682 GCTCCGTATGTGATCTATCCTGC 60.675 52.174 0.00 0.00 0.00 4.85
94 95 3.496331 TCCGTATGTGATCTATCCTGCA 58.504 45.455 0.00 0.00 0.00 4.41
95 96 3.507622 TCCGTATGTGATCTATCCTGCAG 59.492 47.826 6.78 6.78 0.00 4.41
96 97 3.507622 CCGTATGTGATCTATCCTGCAGA 59.492 47.826 17.39 1.21 0.00 4.26
97 98 4.380339 CCGTATGTGATCTATCCTGCAGAG 60.380 50.000 17.39 4.72 0.00 3.35
98 99 4.380339 CGTATGTGATCTATCCTGCAGAGG 60.380 50.000 17.39 0.00 41.39 3.69
99 100 1.690893 TGTGATCTATCCTGCAGAGGC 59.309 52.381 17.39 1.83 39.57 4.70
100 101 1.001860 GTGATCTATCCTGCAGAGGCC 59.998 57.143 17.39 0.00 39.57 5.19
101 102 0.246086 GATCTATCCTGCAGAGGCCG 59.754 60.000 17.39 0.00 39.57 6.13
102 103 1.190833 ATCTATCCTGCAGAGGCCGG 61.191 60.000 17.39 0.00 44.99 6.13
123 124 6.406692 CGGAGGATAGAGACCTTTTTATGA 57.593 41.667 0.00 0.00 37.93 2.15
124 125 6.998802 CGGAGGATAGAGACCTTTTTATGAT 58.001 40.000 0.00 0.00 37.93 2.45
125 126 6.870965 CGGAGGATAGAGACCTTTTTATGATG 59.129 42.308 0.00 0.00 37.93 3.07
126 127 7.164803 GGAGGATAGAGACCTTTTTATGATGG 58.835 42.308 0.00 0.00 37.93 3.51
127 128 6.538263 AGGATAGAGACCTTTTTATGATGGC 58.462 40.000 0.00 0.00 33.55 4.40
128 129 6.331307 AGGATAGAGACCTTTTTATGATGGCT 59.669 38.462 0.00 0.00 33.55 4.75
129 130 7.001073 GGATAGAGACCTTTTTATGATGGCTT 58.999 38.462 0.00 0.00 0.00 4.35
130 131 7.174080 GGATAGAGACCTTTTTATGATGGCTTC 59.826 40.741 0.00 0.00 0.00 3.86
131 132 6.072199 AGAGACCTTTTTATGATGGCTTCT 57.928 37.500 1.86 0.00 0.00 2.85
132 133 7.200434 AGAGACCTTTTTATGATGGCTTCTA 57.800 36.000 1.86 0.00 0.00 2.10
133 134 7.051000 AGAGACCTTTTTATGATGGCTTCTAC 58.949 38.462 1.86 0.00 0.00 2.59
134 135 6.122964 AGACCTTTTTATGATGGCTTCTACC 58.877 40.000 1.86 0.00 0.00 3.18
135 136 5.201243 ACCTTTTTATGATGGCTTCTACCC 58.799 41.667 1.86 0.00 0.00 3.69
136 137 4.275936 CCTTTTTATGATGGCTTCTACCCG 59.724 45.833 1.86 0.00 0.00 5.28
137 138 3.485463 TTTATGATGGCTTCTACCCGG 57.515 47.619 0.00 0.00 0.00 5.73
138 139 2.097110 TATGATGGCTTCTACCCGGT 57.903 50.000 0.00 0.00 0.00 5.28
139 140 1.213296 ATGATGGCTTCTACCCGGTT 58.787 50.000 0.00 0.00 0.00 4.44
140 141 0.251916 TGATGGCTTCTACCCGGTTG 59.748 55.000 0.00 0.00 0.00 3.77
141 142 0.463833 GATGGCTTCTACCCGGTTGG 60.464 60.000 0.00 0.00 41.37 3.77
142 143 0.912487 ATGGCTTCTACCCGGTTGGA 60.912 55.000 0.00 0.00 37.49 3.53
143 144 1.221021 GGCTTCTACCCGGTTGGAG 59.779 63.158 0.00 3.04 37.49 3.86
144 145 1.551019 GGCTTCTACCCGGTTGGAGT 61.551 60.000 8.86 0.00 37.49 3.85
145 146 0.391263 GCTTCTACCCGGTTGGAGTG 60.391 60.000 8.86 0.00 37.49 3.51
146 147 0.391263 CTTCTACCCGGTTGGAGTGC 60.391 60.000 0.00 0.00 37.49 4.40
147 148 0.834687 TTCTACCCGGTTGGAGTGCT 60.835 55.000 0.00 0.00 37.49 4.40
148 149 1.218316 CTACCCGGTTGGAGTGCTC 59.782 63.158 0.00 0.00 37.49 4.26
149 150 2.558554 CTACCCGGTTGGAGTGCTCG 62.559 65.000 0.00 0.00 37.49 5.03
150 151 4.760047 CCCGGTTGGAGTGCTCGG 62.760 72.222 0.00 0.00 40.32 4.63
153 154 4.329545 GGTTGGAGTGCTCGGCCA 62.330 66.667 2.24 0.18 0.00 5.36
154 155 2.743928 GTTGGAGTGCTCGGCCAG 60.744 66.667 2.24 0.00 32.47 4.85
155 156 4.020617 TTGGAGTGCTCGGCCAGG 62.021 66.667 2.24 0.00 32.47 4.45
158 159 4.459089 GAGTGCTCGGCCAGGGAC 62.459 72.222 2.24 5.98 0.00 4.46
160 161 4.101448 GTGCTCGGCCAGGGACAT 62.101 66.667 2.24 0.00 0.00 3.06
161 162 3.329889 TGCTCGGCCAGGGACATT 61.330 61.111 2.24 0.00 0.00 2.71
162 163 2.044946 GCTCGGCCAGGGACATTT 60.045 61.111 2.24 0.00 0.00 2.32
163 164 1.678970 GCTCGGCCAGGGACATTTT 60.679 57.895 2.24 0.00 0.00 1.82
164 165 1.250840 GCTCGGCCAGGGACATTTTT 61.251 55.000 2.24 0.00 0.00 1.94
180 181 1.872773 TTTTTACCCCCATGGATGGC 58.127 50.000 15.22 0.00 46.70 4.40
181 182 0.396417 TTTTACCCCCATGGATGGCG 60.396 55.000 15.22 3.79 46.70 5.69
184 185 4.900704 CCCCCATGGATGGCGGTG 62.901 72.222 15.22 0.00 46.70 4.94
185 186 4.127744 CCCCATGGATGGCGGTGT 62.128 66.667 15.22 0.00 46.70 4.16
186 187 2.829914 CCCATGGATGGCGGTGTG 60.830 66.667 15.22 0.00 46.70 3.82
187 188 2.271821 CCATGGATGGCGGTGTGA 59.728 61.111 5.56 0.00 41.75 3.58
188 189 2.114670 CCATGGATGGCGGTGTGAC 61.115 63.158 5.56 0.00 41.75 3.67
189 190 2.114670 CATGGATGGCGGTGTGACC 61.115 63.158 0.00 0.00 34.05 4.02
190 191 2.300967 ATGGATGGCGGTGTGACCT 61.301 57.895 0.00 0.00 35.66 3.85
191 192 1.852157 ATGGATGGCGGTGTGACCTT 61.852 55.000 0.00 0.00 35.66 3.50
192 193 1.745489 GGATGGCGGTGTGACCTTC 60.745 63.158 0.00 0.00 35.66 3.46
193 194 2.047274 ATGGCGGTGTGACCTTCG 60.047 61.111 0.00 0.00 35.66 3.79
194 195 3.605749 ATGGCGGTGTGACCTTCGG 62.606 63.158 0.00 0.00 35.66 4.30
195 196 3.998672 GGCGGTGTGACCTTCGGA 61.999 66.667 0.00 0.00 35.66 4.55
196 197 2.264794 GCGGTGTGACCTTCGGAT 59.735 61.111 0.00 0.00 35.66 4.18
197 198 1.375523 GCGGTGTGACCTTCGGATT 60.376 57.895 0.00 0.00 35.66 3.01
198 199 1.635663 GCGGTGTGACCTTCGGATTG 61.636 60.000 0.00 0.00 35.66 2.67
199 200 1.019278 CGGTGTGACCTTCGGATTGG 61.019 60.000 0.00 0.00 35.66 3.16
200 201 0.323629 GGTGTGACCTTCGGATTGGA 59.676 55.000 4.84 0.00 34.73 3.53
201 202 1.439679 GTGTGACCTTCGGATTGGAC 58.560 55.000 4.84 0.17 0.00 4.02
202 203 0.323629 TGTGACCTTCGGATTGGACC 59.676 55.000 4.84 0.00 0.00 4.46
210 211 3.827634 GGATTGGACCGGCATCAC 58.172 61.111 0.00 0.00 0.00 3.06
211 212 1.823899 GGATTGGACCGGCATCACC 60.824 63.158 0.00 0.00 0.00 4.02
212 213 1.224592 GATTGGACCGGCATCACCT 59.775 57.895 0.00 0.00 35.61 4.00
213 214 0.394352 GATTGGACCGGCATCACCTT 60.394 55.000 0.00 0.00 35.61 3.50
214 215 0.916086 ATTGGACCGGCATCACCTTA 59.084 50.000 0.00 0.00 35.61 2.69
215 216 0.251916 TTGGACCGGCATCACCTTAG 59.748 55.000 0.00 0.00 35.61 2.18
216 217 1.146263 GGACCGGCATCACCTTAGG 59.854 63.158 0.00 0.00 35.61 2.69
217 218 1.523938 GACCGGCATCACCTTAGGC 60.524 63.158 0.00 0.00 35.61 3.93
218 219 2.203209 CCGGCATCACCTTAGGCC 60.203 66.667 0.00 0.00 42.88 5.19
219 220 2.746375 CCGGCATCACCTTAGGCCT 61.746 63.158 11.78 11.78 44.13 5.19
220 221 1.227674 CGGCATCACCTTAGGCCTC 60.228 63.158 9.68 0.00 44.13 4.70
221 222 1.690219 CGGCATCACCTTAGGCCTCT 61.690 60.000 9.68 0.00 44.13 3.69
222 223 0.548510 GGCATCACCTTAGGCCTCTT 59.451 55.000 9.68 0.00 43.00 2.85
223 224 1.064389 GGCATCACCTTAGGCCTCTTT 60.064 52.381 9.68 0.00 43.00 2.52
224 225 2.621668 GGCATCACCTTAGGCCTCTTTT 60.622 50.000 9.68 0.00 43.00 2.27
225 226 3.371595 GGCATCACCTTAGGCCTCTTTTA 60.372 47.826 9.68 0.00 43.00 1.52
226 227 4.464947 GCATCACCTTAGGCCTCTTTTAT 58.535 43.478 9.68 0.00 0.00 1.40
227 228 4.517075 GCATCACCTTAGGCCTCTTTTATC 59.483 45.833 9.68 0.00 0.00 1.75
228 229 5.688766 GCATCACCTTAGGCCTCTTTTATCT 60.689 44.000 9.68 0.00 0.00 1.98
229 230 6.360618 CATCACCTTAGGCCTCTTTTATCTT 58.639 40.000 9.68 0.00 0.00 2.40
230 231 6.388619 TCACCTTAGGCCTCTTTTATCTTT 57.611 37.500 9.68 0.00 0.00 2.52
231 232 6.790319 TCACCTTAGGCCTCTTTTATCTTTT 58.210 36.000 9.68 0.00 0.00 2.27
232 233 7.238710 TCACCTTAGGCCTCTTTTATCTTTTT 58.761 34.615 9.68 0.00 0.00 1.94
251 252 3.253955 CGCTACTGCTGGCGTTTT 58.746 55.556 6.16 0.00 45.34 2.43
252 253 1.574428 CGCTACTGCTGGCGTTTTT 59.426 52.632 6.16 0.00 45.34 1.94
272 273 6.429791 TTTTTGCCTTTTTACTTTGGCTTC 57.570 33.333 0.00 0.00 45.11 3.86
273 274 5.351948 TTTGCCTTTTTACTTTGGCTTCT 57.648 34.783 0.00 0.00 45.11 2.85
274 275 6.472686 TTTGCCTTTTTACTTTGGCTTCTA 57.527 33.333 0.00 0.00 45.11 2.10
275 276 5.705609 TGCCTTTTTACTTTGGCTTCTAG 57.294 39.130 0.00 0.00 45.11 2.43
276 277 5.137551 TGCCTTTTTACTTTGGCTTCTAGT 58.862 37.500 0.00 0.00 45.11 2.57
277 278 6.300703 TGCCTTTTTACTTTGGCTTCTAGTA 58.699 36.000 0.00 0.00 45.11 1.82
278 279 6.206048 TGCCTTTTTACTTTGGCTTCTAGTAC 59.794 38.462 0.00 0.00 45.11 2.73
279 280 6.430308 GCCTTTTTACTTTGGCTTCTAGTACT 59.570 38.462 0.00 0.00 41.92 2.73
280 281 7.040617 GCCTTTTTACTTTGGCTTCTAGTACTT 60.041 37.037 0.00 0.00 41.92 2.24
281 282 8.847196 CCTTTTTACTTTGGCTTCTAGTACTTT 58.153 33.333 0.00 0.00 0.00 2.66
282 283 9.665264 CTTTTTACTTTGGCTTCTAGTACTTTG 57.335 33.333 0.00 0.00 0.00 2.77
283 284 8.967664 TTTTACTTTGGCTTCTAGTACTTTGA 57.032 30.769 0.00 0.00 0.00 2.69
284 285 8.967664 TTTACTTTGGCTTCTAGTACTTTGAA 57.032 30.769 0.00 5.80 0.00 2.69
285 286 8.967664 TTACTTTGGCTTCTAGTACTTTGAAA 57.032 30.769 0.00 0.00 0.00 2.69
286 287 7.260558 ACTTTGGCTTCTAGTACTTTGAAAC 57.739 36.000 0.00 2.20 0.00 2.78
287 288 7.054751 ACTTTGGCTTCTAGTACTTTGAAACT 58.945 34.615 0.00 0.00 0.00 2.66
288 289 7.556635 ACTTTGGCTTCTAGTACTTTGAAACTT 59.443 33.333 0.00 0.00 0.00 2.66
289 290 7.875327 TTGGCTTCTAGTACTTTGAAACTTT 57.125 32.000 0.00 0.00 0.00 2.66
290 291 7.259290 TGGCTTCTAGTACTTTGAAACTTTG 57.741 36.000 0.00 0.00 0.00 2.77
291 292 6.262273 TGGCTTCTAGTACTTTGAAACTTTGG 59.738 38.462 0.00 0.00 0.00 3.28
292 293 6.143496 GCTTCTAGTACTTTGAAACTTTGGC 58.857 40.000 0.00 2.10 0.00 4.52
293 294 6.017026 GCTTCTAGTACTTTGAAACTTTGGCT 60.017 38.462 0.00 0.00 0.00 4.75
294 295 6.861065 TCTAGTACTTTGAAACTTTGGCTG 57.139 37.500 0.00 0.00 0.00 4.85
295 296 6.354130 TCTAGTACTTTGAAACTTTGGCTGT 58.646 36.000 0.00 0.00 0.00 4.40
296 297 5.248870 AGTACTTTGAAACTTTGGCTGTG 57.751 39.130 0.00 0.00 0.00 3.66
297 298 4.705023 AGTACTTTGAAACTTTGGCTGTGT 59.295 37.500 0.00 0.00 0.00 3.72
298 299 3.848726 ACTTTGAAACTTTGGCTGTGTG 58.151 40.909 0.00 0.00 0.00 3.82
299 300 2.292103 TTGAAACTTTGGCTGTGTGC 57.708 45.000 0.00 0.00 41.94 4.57
300 301 1.180907 TGAAACTTTGGCTGTGTGCA 58.819 45.000 0.00 0.00 45.15 4.57
301 302 1.755959 TGAAACTTTGGCTGTGTGCAT 59.244 42.857 0.00 0.00 45.15 3.96
302 303 2.223782 TGAAACTTTGGCTGTGTGCATC 60.224 45.455 0.00 0.00 45.15 3.91
303 304 1.696063 AACTTTGGCTGTGTGCATCT 58.304 45.000 0.00 0.00 45.15 2.90
304 305 2.566833 ACTTTGGCTGTGTGCATCTA 57.433 45.000 0.00 0.00 45.15 1.98
305 306 2.430465 ACTTTGGCTGTGTGCATCTAG 58.570 47.619 0.00 0.00 45.15 2.43
306 307 1.131883 CTTTGGCTGTGTGCATCTAGC 59.868 52.381 9.68 9.68 45.15 3.42
307 308 0.325933 TTGGCTGTGTGCATCTAGCT 59.674 50.000 15.51 0.00 45.94 3.32
308 309 1.194218 TGGCTGTGTGCATCTAGCTA 58.806 50.000 15.51 9.22 45.94 3.32
309 310 1.764723 TGGCTGTGTGCATCTAGCTAT 59.235 47.619 15.51 0.00 45.94 2.97
310 311 2.141517 GGCTGTGTGCATCTAGCTATG 58.858 52.381 15.51 0.00 45.94 2.23
318 319 2.383368 CATCTAGCTATGCAGAGGCC 57.617 55.000 10.92 0.00 40.13 5.19
319 320 0.894141 ATCTAGCTATGCAGAGGCCG 59.106 55.000 10.92 0.48 40.13 6.13
320 321 1.181741 TCTAGCTATGCAGAGGCCGG 61.182 60.000 10.92 0.00 40.13 6.13
321 322 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
322 323 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
323 324 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
324 325 2.364973 TATGCAGAGGCCGGGTGA 60.365 61.111 2.18 0.00 40.13 4.02
325 326 1.762522 CTATGCAGAGGCCGGGTGAT 61.763 60.000 2.18 0.00 40.13 3.06
326 327 1.758440 TATGCAGAGGCCGGGTGATC 61.758 60.000 2.18 0.00 40.13 2.92
327 328 3.474570 GCAGAGGCCGGGTGATCT 61.475 66.667 2.18 0.00 0.00 2.75
328 329 3.036429 GCAGAGGCCGGGTGATCTT 62.036 63.158 2.18 0.00 0.00 2.40
329 330 1.604378 CAGAGGCCGGGTGATCTTT 59.396 57.895 2.18 0.00 0.00 2.52
330 331 0.745845 CAGAGGCCGGGTGATCTTTG 60.746 60.000 2.18 0.00 0.00 2.77
331 332 0.909610 AGAGGCCGGGTGATCTTTGA 60.910 55.000 2.18 0.00 0.00 2.69
332 333 0.181350 GAGGCCGGGTGATCTTTGAT 59.819 55.000 2.18 0.00 0.00 2.57
333 334 0.107017 AGGCCGGGTGATCTTTGATG 60.107 55.000 2.18 0.00 0.00 3.07
334 335 1.728490 GGCCGGGTGATCTTTGATGC 61.728 60.000 2.18 0.00 0.00 3.91
335 336 2.016961 CCGGGTGATCTTTGATGCG 58.983 57.895 0.00 0.00 0.00 4.73
336 337 1.439353 CCGGGTGATCTTTGATGCGG 61.439 60.000 0.00 0.00 0.00 5.69
337 338 0.744414 CGGGTGATCTTTGATGCGGT 60.744 55.000 0.00 0.00 0.00 5.68
338 339 1.463674 GGGTGATCTTTGATGCGGTT 58.536 50.000 0.00 0.00 0.00 4.44
339 340 1.133025 GGGTGATCTTTGATGCGGTTG 59.867 52.381 0.00 0.00 0.00 3.77
340 341 1.812571 GGTGATCTTTGATGCGGTTGT 59.187 47.619 0.00 0.00 0.00 3.32
341 342 3.006940 GGTGATCTTTGATGCGGTTGTA 58.993 45.455 0.00 0.00 0.00 2.41
342 343 3.627577 GGTGATCTTTGATGCGGTTGTAT 59.372 43.478 0.00 0.00 0.00 2.29
343 344 4.260784 GGTGATCTTTGATGCGGTTGTATC 60.261 45.833 0.00 0.00 37.68 2.24
344 345 4.332543 GTGATCTTTGATGCGGTTGTATCA 59.667 41.667 0.00 0.00 44.15 2.15
349 350 2.267426 TGATGCGGTTGTATCAACTCG 58.733 47.619 11.48 13.05 43.10 4.18
350 351 2.094442 TGATGCGGTTGTATCAACTCGA 60.094 45.455 19.17 0.00 43.10 4.04
351 352 2.665649 TGCGGTTGTATCAACTCGAT 57.334 45.000 19.17 0.00 38.21 3.59
352 353 3.786516 TGCGGTTGTATCAACTCGATA 57.213 42.857 19.17 9.89 35.39 2.92
353 354 4.316205 TGCGGTTGTATCAACTCGATAT 57.684 40.909 19.17 0.00 38.85 1.63
354 355 4.689071 TGCGGTTGTATCAACTCGATATT 58.311 39.130 19.17 0.00 38.85 1.28
355 356 5.113383 TGCGGTTGTATCAACTCGATATTT 58.887 37.500 19.17 0.00 38.85 1.40
356 357 5.233476 TGCGGTTGTATCAACTCGATATTTC 59.767 40.000 19.17 7.80 38.85 2.17
357 358 5.233476 GCGGTTGTATCAACTCGATATTTCA 59.767 40.000 19.17 0.00 38.85 2.69
358 359 6.237996 GCGGTTGTATCAACTCGATATTTCAA 60.238 38.462 19.17 0.00 38.85 2.69
359 360 7.518370 GCGGTTGTATCAACTCGATATTTCAAT 60.518 37.037 19.17 0.00 38.85 2.57
360 361 8.335356 CGGTTGTATCAACTCGATATTTCAATT 58.665 33.333 11.48 0.00 38.85 2.32
361 362 9.651718 GGTTGTATCAACTCGATATTTCAATTC 57.348 33.333 11.48 0.00 38.85 2.17
379 380 8.776376 TTCAATTCAATGAAAAGCCCTTTATC 57.224 30.769 0.00 0.00 36.42 1.75
380 381 7.035004 TCAATTCAATGAAAAGCCCTTTATCG 58.965 34.615 0.00 0.00 31.63 2.92
381 382 6.773976 ATTCAATGAAAAGCCCTTTATCGA 57.226 33.333 0.00 0.00 31.63 3.59
382 383 5.818136 TCAATGAAAAGCCCTTTATCGAG 57.182 39.130 0.00 0.00 31.63 4.04
383 384 5.496556 TCAATGAAAAGCCCTTTATCGAGA 58.503 37.500 0.00 0.00 31.63 4.04
384 385 5.943416 TCAATGAAAAGCCCTTTATCGAGAA 59.057 36.000 0.00 0.00 31.63 2.87
385 386 6.432783 TCAATGAAAAGCCCTTTATCGAGAAA 59.567 34.615 4.96 4.96 31.63 2.52
386 387 6.834168 ATGAAAAGCCCTTTATCGAGAAAA 57.166 33.333 6.68 1.35 31.63 2.29
387 388 6.642707 TGAAAAGCCCTTTATCGAGAAAAA 57.357 33.333 6.68 0.00 31.63 1.94
419 420 4.455877 TGCTAACTGCCTAAGAAAGAAAGC 59.544 41.667 0.00 0.00 42.00 3.51
421 422 5.875359 GCTAACTGCCTAAGAAAGAAAGCTA 59.125 40.000 0.00 0.00 35.15 3.32
424 425 5.870706 ACTGCCTAAGAAAGAAAGCTAAGT 58.129 37.500 0.00 0.00 0.00 2.24
507 508 7.500227 TGGCTAGAGAATGATTTTATTCACCAG 59.500 37.037 0.00 0.00 39.08 4.00
523 524 3.387374 TCACCAGTAACCGGAAACAGTTA 59.613 43.478 9.46 0.00 0.00 2.24
537 539 7.061789 CCGGAAACAGTTATGAAAAATTACTGC 59.938 37.037 0.00 0.00 39.77 4.40
618 620 2.110835 ACACGCATGCCTGACACA 59.889 55.556 21.37 0.00 0.00 3.72
687 902 3.261580 CAAGCAACGTACTCCATCATCA 58.738 45.455 0.00 0.00 0.00 3.07
688 904 3.827008 AGCAACGTACTCCATCATCAT 57.173 42.857 0.00 0.00 0.00 2.45
689 905 3.722147 AGCAACGTACTCCATCATCATC 58.278 45.455 0.00 0.00 0.00 2.92
708 924 9.958180 TCATCATCCAATAGAAAAAGAACACTA 57.042 29.630 0.00 0.00 0.00 2.74
951 1223 1.893808 CACACAGCGCCAGAGGTTT 60.894 57.895 2.29 0.00 0.00 3.27
952 1224 0.602638 CACACAGCGCCAGAGGTTTA 60.603 55.000 2.29 0.00 0.00 2.01
953 1225 0.107831 ACACAGCGCCAGAGGTTTAA 59.892 50.000 2.29 0.00 0.00 1.52
954 1226 1.271379 ACACAGCGCCAGAGGTTTAAT 60.271 47.619 2.29 0.00 0.00 1.40
955 1227 1.812571 CACAGCGCCAGAGGTTTAATT 59.187 47.619 2.29 0.00 0.00 1.40
956 1228 2.228822 CACAGCGCCAGAGGTTTAATTT 59.771 45.455 2.29 0.00 0.00 1.82
957 1229 3.438781 CACAGCGCCAGAGGTTTAATTTA 59.561 43.478 2.29 0.00 0.00 1.40
958 1230 4.076394 ACAGCGCCAGAGGTTTAATTTAA 58.924 39.130 2.29 0.00 0.00 1.52
959 1231 4.705023 ACAGCGCCAGAGGTTTAATTTAAT 59.295 37.500 2.29 0.00 0.00 1.40
960 1232 5.185056 ACAGCGCCAGAGGTTTAATTTAATT 59.815 36.000 2.29 0.00 0.00 1.40
961 1233 6.376018 ACAGCGCCAGAGGTTTAATTTAATTA 59.624 34.615 2.29 0.00 0.00 1.40
962 1234 7.094118 ACAGCGCCAGAGGTTTAATTTAATTAA 60.094 33.333 2.29 6.08 33.20 1.40
963 1235 7.920682 CAGCGCCAGAGGTTTAATTTAATTAAT 59.079 33.333 2.29 0.00 34.92 1.40
964 1236 8.135529 AGCGCCAGAGGTTTAATTTAATTAATC 58.864 33.333 2.29 9.65 34.92 1.75
965 1237 7.112984 GCGCCAGAGGTTTAATTTAATTAATCG 59.887 37.037 10.45 6.36 34.92 3.34
966 1238 7.589954 CGCCAGAGGTTTAATTTAATTAATCGG 59.410 37.037 10.45 11.09 34.92 4.18
967 1239 7.381408 GCCAGAGGTTTAATTTAATTAATCGGC 59.619 37.037 10.45 15.24 34.92 5.54
968 1240 7.865889 CCAGAGGTTTAATTTAATTAATCGGCC 59.134 37.037 10.45 10.28 34.92 6.13
969 1241 7.589954 CAGAGGTTTAATTTAATTAATCGGCCG 59.410 37.037 22.12 22.12 34.92 6.13
970 1242 7.499895 AGAGGTTTAATTTAATTAATCGGCCGA 59.500 33.333 33.12 33.12 34.92 5.54
971 1243 7.645402 AGGTTTAATTTAATTAATCGGCCGAG 58.355 34.615 33.87 1.78 34.92 4.63
972 1244 7.499895 AGGTTTAATTTAATTAATCGGCCGAGA 59.500 33.333 33.87 21.04 34.92 4.04
973 1245 8.130469 GGTTTAATTTAATTAATCGGCCGAGAA 58.870 33.333 33.87 27.86 34.92 2.87
974 1246 9.166126 GTTTAATTTAATTAATCGGCCGAGAAG 57.834 33.333 33.87 0.00 34.92 2.85
975 1247 8.665643 TTAATTTAATTAATCGGCCGAGAAGA 57.334 30.769 33.87 18.83 30.25 2.87
976 1248 6.787085 ATTTAATTAATCGGCCGAGAAGAG 57.213 37.500 33.87 0.00 0.00 2.85
977 1249 2.156343 ATTAATCGGCCGAGAAGAGC 57.844 50.000 33.87 0.00 0.00 4.09
978 1250 0.821517 TTAATCGGCCGAGAAGAGCA 59.178 50.000 33.87 7.83 0.00 4.26
979 1251 0.385751 TAATCGGCCGAGAAGAGCAG 59.614 55.000 33.87 0.00 0.00 4.24
980 1252 1.323271 AATCGGCCGAGAAGAGCAGA 61.323 55.000 33.87 6.09 37.60 4.26
981 1253 1.733402 ATCGGCCGAGAAGAGCAGAG 61.733 60.000 33.87 0.00 36.65 3.35
982 1254 2.410687 CGGCCGAGAAGAGCAGAGA 61.411 63.158 24.07 0.00 0.00 3.10
983 1255 1.893786 GGCCGAGAAGAGCAGAGAA 59.106 57.895 0.00 0.00 0.00 2.87
984 1256 0.179113 GGCCGAGAAGAGCAGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
985 1257 0.530288 GCCGAGAAGAGCAGAGAAGT 59.470 55.000 0.00 0.00 0.00 3.01
986 1258 1.735369 GCCGAGAAGAGCAGAGAAGTG 60.735 57.143 0.00 0.00 0.00 3.16
987 1259 1.815613 CCGAGAAGAGCAGAGAAGTGA 59.184 52.381 0.00 0.00 0.00 3.41
988 1260 2.159393 CCGAGAAGAGCAGAGAAGTGAG 60.159 54.545 0.00 0.00 0.00 3.51
989 1261 2.731968 CGAGAAGAGCAGAGAAGTGAGC 60.732 54.545 0.00 0.00 0.00 4.26
990 1262 2.230992 GAGAAGAGCAGAGAAGTGAGCA 59.769 50.000 0.00 0.00 0.00 4.26
991 1263 2.632028 AGAAGAGCAGAGAAGTGAGCAA 59.368 45.455 0.00 0.00 0.00 3.91
992 1264 2.747396 AGAGCAGAGAAGTGAGCAAG 57.253 50.000 0.00 0.00 0.00 4.01
993 1265 1.275856 AGAGCAGAGAAGTGAGCAAGG 59.724 52.381 0.00 0.00 0.00 3.61
994 1266 1.001860 GAGCAGAGAAGTGAGCAAGGT 59.998 52.381 0.00 0.00 0.00 3.50
995 1267 2.232452 GAGCAGAGAAGTGAGCAAGGTA 59.768 50.000 0.00 0.00 0.00 3.08
996 1268 2.233431 AGCAGAGAAGTGAGCAAGGTAG 59.767 50.000 0.00 0.00 0.00 3.18
997 1269 2.615869 CAGAGAAGTGAGCAAGGTAGC 58.384 52.381 0.00 0.00 0.00 3.58
998 1270 2.028658 CAGAGAAGTGAGCAAGGTAGCA 60.029 50.000 0.00 0.00 36.85 3.49
1521 1823 0.593008 CGTCGTCGTTGGAGAACACA 60.593 55.000 0.00 0.00 31.78 3.72
1740 2054 3.449018 TGTCTCAGATTTAGGCAGAGGAC 59.551 47.826 0.00 0.00 0.00 3.85
1772 2086 5.048713 CCTCGGCTAGTTTCTTGTTCATTTT 60.049 40.000 0.00 0.00 0.00 1.82
1773 2087 6.385649 TCGGCTAGTTTCTTGTTCATTTTT 57.614 33.333 0.00 0.00 0.00 1.94
1971 2299 1.947456 GGCGTCCAATTGATACCCTTC 59.053 52.381 7.12 0.00 0.00 3.46
2073 2417 1.975680 GTGGAGGGGTGAAGTTGTAGA 59.024 52.381 0.00 0.00 0.00 2.59
2078 2422 2.979678 AGGGGTGAAGTTGTAGATGTGT 59.020 45.455 0.00 0.00 0.00 3.72
2079 2423 3.074412 GGGGTGAAGTTGTAGATGTGTG 58.926 50.000 0.00 0.00 0.00 3.82
2120 2464 1.040339 ACCAGAGTCTCGGAGATGCC 61.040 60.000 11.46 3.83 33.89 4.40
2126 2470 0.532573 GTCTCGGAGATGCCTTGTCA 59.467 55.000 11.46 0.00 33.89 3.58
2127 2471 0.820226 TCTCGGAGATGCCTTGTCAG 59.180 55.000 2.97 0.00 33.89 3.51
2185 4161 1.951602 GTTTCGGTAAGCTGGTGGTTT 59.048 47.619 0.00 0.00 35.36 3.27
2186 4162 1.600023 TTCGGTAAGCTGGTGGTTTG 58.400 50.000 0.00 0.00 35.36 2.93
2187 4163 0.759959 TCGGTAAGCTGGTGGTTTGA 59.240 50.000 0.00 0.00 35.36 2.69
2188 4164 1.141254 TCGGTAAGCTGGTGGTTTGAA 59.859 47.619 0.00 0.00 35.36 2.69
2189 4165 1.535462 CGGTAAGCTGGTGGTTTGAAG 59.465 52.381 0.00 0.00 35.36 3.02
2190 4166 2.583143 GGTAAGCTGGTGGTTTGAAGT 58.417 47.619 0.00 0.00 35.36 3.01
2195 4177 4.123497 AGCTGGTGGTTTGAAGTTTTTC 57.877 40.909 0.00 0.00 0.00 2.29
2230 4212 2.230750 AGTAGGGAACAACGAGTAGTGC 59.769 50.000 0.00 0.00 0.00 4.40
2232 4214 0.034337 GGGAACAACGAGTAGTGCCA 59.966 55.000 0.00 0.00 0.00 4.92
2324 4306 5.221106 CGATCGGGTGGACTTATTGTAACTA 60.221 44.000 7.38 0.00 0.00 2.24
2328 4310 5.522460 CGGGTGGACTTATTGTAACTATGTG 59.478 44.000 0.00 0.00 0.00 3.21
2331 4313 7.065443 GGGTGGACTTATTGTAACTATGTGTTC 59.935 40.741 0.00 0.00 39.89 3.18
2333 4315 8.656849 GTGGACTTATTGTAACTATGTGTTCAG 58.343 37.037 0.00 0.00 39.89 3.02
2449 4434 4.702131 GTGAAATCCTGATTGGTGCTAACT 59.298 41.667 0.00 0.00 37.07 2.24
2464 4449 3.860536 TGCTAACTCGCAAAAACAAAACC 59.139 39.130 0.00 0.00 36.89 3.27
2488 4478 0.035152 ATTGACGCCATGGCAGAAGA 60.035 50.000 34.93 17.18 42.06 2.87
2498 4488 2.154854 TGGCAGAAGAACTCGAGTTG 57.845 50.000 34.23 21.15 38.56 3.16
2521 4511 9.399403 GTTGTCTTTCCTCAAGATAAATGAAAC 57.601 33.333 0.00 0.00 42.44 2.78
2547 4542 6.807230 CGATAGTAATGTATGTAGCCTCCAAC 59.193 42.308 0.00 0.00 0.00 3.77
2690 4686 5.277876 GCTGTCCTTCATCAATAGATTGCAG 60.278 44.000 0.00 0.00 37.68 4.41
2700 4696 9.734984 TCATCAATAGATTGCAGATACATGATT 57.265 29.630 0.00 0.00 37.68 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.844244 GCATAGGAGATGAAACACTTTTATGAT 58.156 33.333 0.00 0.00 0.00 2.45
20 21 7.828717 TGCATAGGAGATGAAACACTTTTATGA 59.171 33.333 0.00 0.00 0.00 2.15
21 22 7.988737 TGCATAGGAGATGAAACACTTTTATG 58.011 34.615 0.00 0.00 0.00 1.90
23 24 7.615582 CTGCATAGGAGATGAAACACTTTTA 57.384 36.000 0.00 0.00 0.00 1.52
24 25 6.506500 CTGCATAGGAGATGAAACACTTTT 57.493 37.500 0.00 0.00 0.00 2.27
40 41 7.307042 GCGAGCATATATGAATTACCTGCATAG 60.307 40.741 17.10 0.00 0.00 2.23
41 42 6.479990 GCGAGCATATATGAATTACCTGCATA 59.520 38.462 17.10 0.00 0.00 3.14
42 43 5.295292 GCGAGCATATATGAATTACCTGCAT 59.705 40.000 17.10 0.00 0.00 3.96
43 44 4.631377 GCGAGCATATATGAATTACCTGCA 59.369 41.667 17.10 0.00 0.00 4.41
44 45 4.259970 CGCGAGCATATATGAATTACCTGC 60.260 45.833 17.10 6.90 0.00 4.85
45 46 5.102313 TCGCGAGCATATATGAATTACCTG 58.898 41.667 17.10 0.00 0.00 4.00
46 47 5.324784 TCGCGAGCATATATGAATTACCT 57.675 39.130 17.10 2.55 0.00 3.08
47 48 5.050769 CCATCGCGAGCATATATGAATTACC 60.051 44.000 16.66 0.00 0.00 2.85
48 49 5.557136 GCCATCGCGAGCATATATGAATTAC 60.557 44.000 16.66 0.00 0.00 1.89
49 50 4.507756 GCCATCGCGAGCATATATGAATTA 59.492 41.667 16.66 0.00 0.00 1.40
50 51 3.310774 GCCATCGCGAGCATATATGAATT 59.689 43.478 16.66 0.87 0.00 2.17
51 52 2.868583 GCCATCGCGAGCATATATGAAT 59.131 45.455 16.66 3.76 0.00 2.57
52 53 2.094026 AGCCATCGCGAGCATATATGAA 60.094 45.455 20.64 0.00 41.18 2.57
53 54 1.478105 AGCCATCGCGAGCATATATGA 59.522 47.619 20.64 0.00 41.18 2.15
54 55 1.857217 GAGCCATCGCGAGCATATATG 59.143 52.381 20.64 8.45 41.18 1.78
55 56 1.202463 GGAGCCATCGCGAGCATATAT 60.202 52.381 20.64 1.26 41.18 0.86
56 57 0.173481 GGAGCCATCGCGAGCATATA 59.827 55.000 20.64 0.00 41.18 0.86
57 58 1.079543 GGAGCCATCGCGAGCATAT 60.080 57.895 20.64 3.37 41.18 1.78
58 59 2.340078 GGAGCCATCGCGAGCATA 59.660 61.111 20.64 0.00 41.18 3.14
59 60 4.957684 CGGAGCCATCGCGAGCAT 62.958 66.667 20.64 7.41 41.18 3.79
61 62 3.559657 ATACGGAGCCATCGCGAGC 62.560 63.158 16.66 14.09 41.18 5.03
62 63 1.730902 CATACGGAGCCATCGCGAG 60.731 63.158 16.66 2.31 41.18 5.03
63 64 2.335011 CATACGGAGCCATCGCGA 59.665 61.111 13.09 13.09 41.18 5.87
64 65 2.027605 ACATACGGAGCCATCGCG 59.972 61.111 0.00 0.00 41.18 5.87
65 66 0.319900 ATCACATACGGAGCCATCGC 60.320 55.000 0.00 0.00 0.00 4.58
66 67 1.270826 AGATCACATACGGAGCCATCG 59.729 52.381 0.00 0.00 0.00 3.84
67 68 4.440802 GGATAGATCACATACGGAGCCATC 60.441 50.000 0.00 0.00 0.00 3.51
68 69 3.449018 GGATAGATCACATACGGAGCCAT 59.551 47.826 0.00 0.00 0.00 4.40
69 70 2.826128 GGATAGATCACATACGGAGCCA 59.174 50.000 0.00 0.00 0.00 4.75
70 71 3.093057 AGGATAGATCACATACGGAGCC 58.907 50.000 0.00 0.00 0.00 4.70
71 72 3.674682 GCAGGATAGATCACATACGGAGC 60.675 52.174 0.00 0.00 0.00 4.70
72 73 3.507622 TGCAGGATAGATCACATACGGAG 59.492 47.826 0.00 0.00 0.00 4.63
73 74 3.496331 TGCAGGATAGATCACATACGGA 58.504 45.455 0.00 0.00 0.00 4.69
74 75 3.507622 TCTGCAGGATAGATCACATACGG 59.492 47.826 15.13 0.00 0.00 4.02
75 76 4.380339 CCTCTGCAGGATAGATCACATACG 60.380 50.000 15.13 0.00 43.65 3.06
76 77 4.620332 GCCTCTGCAGGATAGATCACATAC 60.620 50.000 15.13 0.00 43.65 2.39
77 78 3.513119 GCCTCTGCAGGATAGATCACATA 59.487 47.826 15.13 0.00 43.65 2.29
78 79 2.302445 GCCTCTGCAGGATAGATCACAT 59.698 50.000 15.13 0.00 43.65 3.21
79 80 1.690893 GCCTCTGCAGGATAGATCACA 59.309 52.381 15.13 0.00 43.65 3.58
80 81 1.001860 GGCCTCTGCAGGATAGATCAC 59.998 57.143 15.13 0.00 43.65 3.06
81 82 1.346062 GGCCTCTGCAGGATAGATCA 58.654 55.000 15.13 0.00 43.65 2.92
82 83 0.246086 CGGCCTCTGCAGGATAGATC 59.754 60.000 15.13 0.00 43.65 2.75
83 84 2.360138 CGGCCTCTGCAGGATAGAT 58.640 57.895 15.13 0.00 43.65 1.98
84 85 3.862142 CGGCCTCTGCAGGATAGA 58.138 61.111 15.13 0.00 43.65 1.98
90 91 1.814772 CTATCCTCCGGCCTCTGCAG 61.815 65.000 7.63 7.63 40.13 4.41
91 92 1.834378 CTATCCTCCGGCCTCTGCA 60.834 63.158 0.00 0.00 40.13 4.41
92 93 1.531739 CTCTATCCTCCGGCCTCTGC 61.532 65.000 0.00 0.00 0.00 4.26
93 94 0.111446 TCTCTATCCTCCGGCCTCTG 59.889 60.000 0.00 0.00 0.00 3.35
94 95 0.111639 GTCTCTATCCTCCGGCCTCT 59.888 60.000 0.00 0.00 0.00 3.69
95 96 0.896479 GGTCTCTATCCTCCGGCCTC 60.896 65.000 0.00 0.00 0.00 4.70
96 97 1.154221 GGTCTCTATCCTCCGGCCT 59.846 63.158 0.00 0.00 0.00 5.19
97 98 0.470268 AAGGTCTCTATCCTCCGGCC 60.470 60.000 0.00 0.00 33.76 6.13
98 99 1.415200 AAAGGTCTCTATCCTCCGGC 58.585 55.000 0.00 0.00 33.76 6.13
99 100 5.304614 TCATAAAAAGGTCTCTATCCTCCGG 59.695 44.000 0.00 0.00 33.76 5.14
100 101 6.406692 TCATAAAAAGGTCTCTATCCTCCG 57.593 41.667 0.00 0.00 33.76 4.63
101 102 7.164803 CCATCATAAAAAGGTCTCTATCCTCC 58.835 42.308 0.00 0.00 33.76 4.30
102 103 6.652900 GCCATCATAAAAAGGTCTCTATCCTC 59.347 42.308 0.00 0.00 33.76 3.71
103 104 6.331307 AGCCATCATAAAAAGGTCTCTATCCT 59.669 38.462 0.00 0.00 36.81 3.24
104 105 6.538263 AGCCATCATAAAAAGGTCTCTATCC 58.462 40.000 0.00 0.00 0.00 2.59
105 106 7.936301 AGAAGCCATCATAAAAAGGTCTCTATC 59.064 37.037 0.00 0.00 0.00 2.08
106 107 7.810260 AGAAGCCATCATAAAAAGGTCTCTAT 58.190 34.615 0.00 0.00 0.00 1.98
107 108 7.200434 AGAAGCCATCATAAAAAGGTCTCTA 57.800 36.000 0.00 0.00 0.00 2.43
108 109 6.072199 AGAAGCCATCATAAAAAGGTCTCT 57.928 37.500 0.00 0.00 0.00 3.10
109 110 6.261158 GGTAGAAGCCATCATAAAAAGGTCTC 59.739 42.308 0.00 0.00 0.00 3.36
110 111 6.122964 GGTAGAAGCCATCATAAAAAGGTCT 58.877 40.000 0.00 0.00 0.00 3.85
111 112 5.299531 GGGTAGAAGCCATCATAAAAAGGTC 59.700 44.000 0.00 0.00 35.40 3.85
112 113 5.201243 GGGTAGAAGCCATCATAAAAAGGT 58.799 41.667 0.00 0.00 35.40 3.50
113 114 4.275936 CGGGTAGAAGCCATCATAAAAAGG 59.724 45.833 0.00 0.00 34.89 3.11
114 115 4.275936 CCGGGTAGAAGCCATCATAAAAAG 59.724 45.833 0.00 0.00 34.89 2.27
115 116 4.204012 CCGGGTAGAAGCCATCATAAAAA 58.796 43.478 0.00 0.00 34.89 1.94
116 117 3.201266 ACCGGGTAGAAGCCATCATAAAA 59.799 43.478 6.32 0.00 34.89 1.52
117 118 2.775384 ACCGGGTAGAAGCCATCATAAA 59.225 45.455 6.32 0.00 34.89 1.40
118 119 2.404559 ACCGGGTAGAAGCCATCATAA 58.595 47.619 6.32 0.00 34.89 1.90
119 120 2.097110 ACCGGGTAGAAGCCATCATA 57.903 50.000 6.32 0.00 34.89 2.15
120 121 1.134098 CAACCGGGTAGAAGCCATCAT 60.134 52.381 6.32 0.00 34.89 2.45
121 122 0.251916 CAACCGGGTAGAAGCCATCA 59.748 55.000 6.32 0.00 34.89 3.07
122 123 0.463833 CCAACCGGGTAGAAGCCATC 60.464 60.000 6.32 0.00 34.89 3.51
123 124 0.912487 TCCAACCGGGTAGAAGCCAT 60.912 55.000 6.32 0.00 34.89 4.40
124 125 1.536907 TCCAACCGGGTAGAAGCCA 60.537 57.895 6.32 0.00 34.89 4.75
125 126 1.221021 CTCCAACCGGGTAGAAGCC 59.779 63.158 6.32 0.00 38.11 4.35
126 127 0.391263 CACTCCAACCGGGTAGAAGC 60.391 60.000 6.32 0.00 38.11 3.86
127 128 0.391263 GCACTCCAACCGGGTAGAAG 60.391 60.000 6.32 0.00 38.11 2.85
128 129 0.834687 AGCACTCCAACCGGGTAGAA 60.835 55.000 6.32 0.00 38.11 2.10
129 130 1.229082 AGCACTCCAACCGGGTAGA 60.229 57.895 6.32 0.00 38.11 2.59
130 131 1.218316 GAGCACTCCAACCGGGTAG 59.782 63.158 6.32 0.00 38.11 3.18
131 132 2.642254 CGAGCACTCCAACCGGGTA 61.642 63.158 6.32 0.00 38.11 3.69
132 133 4.003788 CGAGCACTCCAACCGGGT 62.004 66.667 6.32 0.00 38.11 5.28
133 134 4.760047 CCGAGCACTCCAACCGGG 62.760 72.222 6.32 0.00 36.81 5.73
136 137 4.329545 TGGCCGAGCACTCCAACC 62.330 66.667 0.00 0.00 0.00 3.77
137 138 2.743928 CTGGCCGAGCACTCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
138 139 4.020617 CCTGGCCGAGCACTCCAA 62.021 66.667 0.00 0.00 0.00 3.53
141 142 4.459089 GTCCCTGGCCGAGCACTC 62.459 72.222 0.00 0.00 0.00 3.51
143 144 3.628646 AATGTCCCTGGCCGAGCAC 62.629 63.158 0.00 0.00 0.00 4.40
144 145 2.424842 AAAATGTCCCTGGCCGAGCA 62.425 55.000 0.00 0.00 0.00 4.26
145 146 1.250840 AAAAATGTCCCTGGCCGAGC 61.251 55.000 0.00 0.00 0.00 5.03
146 147 2.961424 AAAAATGTCCCTGGCCGAG 58.039 52.632 0.00 0.00 0.00 4.63
171 172 2.114670 GGTCACACCGCCATCCATG 61.115 63.158 0.00 0.00 0.00 3.66
172 173 1.852157 AAGGTCACACCGCCATCCAT 61.852 55.000 0.00 0.00 44.90 3.41
173 174 2.463589 GAAGGTCACACCGCCATCCA 62.464 60.000 0.00 0.00 44.90 3.41
174 175 1.745489 GAAGGTCACACCGCCATCC 60.745 63.158 0.00 0.00 44.90 3.51
175 176 2.100631 CGAAGGTCACACCGCCATC 61.101 63.158 0.00 0.00 44.90 3.51
176 177 2.047274 CGAAGGTCACACCGCCAT 60.047 61.111 0.00 0.00 44.90 4.40
193 194 1.823899 GGTGATGCCGGTCCAATCC 60.824 63.158 1.90 0.00 0.00 3.01
194 195 0.394352 AAGGTGATGCCGGTCCAATC 60.394 55.000 1.90 2.43 43.70 2.67
195 196 0.916086 TAAGGTGATGCCGGTCCAAT 59.084 50.000 1.90 0.00 43.70 3.16
196 197 0.251916 CTAAGGTGATGCCGGTCCAA 59.748 55.000 1.90 0.00 43.70 3.53
197 198 1.622607 CCTAAGGTGATGCCGGTCCA 61.623 60.000 1.90 0.00 43.70 4.02
198 199 1.146263 CCTAAGGTGATGCCGGTCC 59.854 63.158 1.90 0.00 43.70 4.46
199 200 1.523938 GCCTAAGGTGATGCCGGTC 60.524 63.158 1.90 0.00 43.70 4.79
200 201 2.590092 GCCTAAGGTGATGCCGGT 59.410 61.111 1.90 0.00 43.70 5.28
201 202 2.203209 GGCCTAAGGTGATGCCGG 60.203 66.667 0.00 0.00 43.70 6.13
203 204 0.548510 AAGAGGCCTAAGGTGATGCC 59.451 55.000 4.42 0.00 44.35 4.40
204 205 2.426842 AAAGAGGCCTAAGGTGATGC 57.573 50.000 4.42 0.00 0.00 3.91
205 206 5.934781 AGATAAAAGAGGCCTAAGGTGATG 58.065 41.667 4.42 0.00 0.00 3.07
206 207 6.582929 AAGATAAAAGAGGCCTAAGGTGAT 57.417 37.500 4.42 0.00 0.00 3.06
207 208 6.388619 AAAGATAAAAGAGGCCTAAGGTGA 57.611 37.500 4.42 0.00 0.00 4.02
208 209 7.468141 AAAAAGATAAAAGAGGCCTAAGGTG 57.532 36.000 4.42 0.00 0.00 4.00
255 256 7.981102 AGTACTAGAAGCCAAAGTAAAAAGG 57.019 36.000 0.00 0.00 0.00 3.11
256 257 9.665264 CAAAGTACTAGAAGCCAAAGTAAAAAG 57.335 33.333 0.00 0.00 0.00 2.27
257 258 9.398538 TCAAAGTACTAGAAGCCAAAGTAAAAA 57.601 29.630 0.00 0.00 0.00 1.94
258 259 8.967664 TCAAAGTACTAGAAGCCAAAGTAAAA 57.032 30.769 0.00 0.00 0.00 1.52
259 260 8.967664 TTCAAAGTACTAGAAGCCAAAGTAAA 57.032 30.769 0.00 0.00 0.00 2.01
260 261 8.833493 GTTTCAAAGTACTAGAAGCCAAAGTAA 58.167 33.333 11.42 0.00 0.00 2.24
261 262 8.208903 AGTTTCAAAGTACTAGAAGCCAAAGTA 58.791 33.333 16.14 0.00 0.00 2.24
262 263 7.054751 AGTTTCAAAGTACTAGAAGCCAAAGT 58.945 34.615 16.14 2.86 0.00 2.66
263 264 7.497925 AGTTTCAAAGTACTAGAAGCCAAAG 57.502 36.000 16.14 0.00 0.00 2.77
264 265 7.875327 AAGTTTCAAAGTACTAGAAGCCAAA 57.125 32.000 16.14 0.47 0.00 3.28
265 266 7.201785 CCAAAGTTTCAAAGTACTAGAAGCCAA 60.202 37.037 16.14 0.75 0.00 4.52
266 267 6.262273 CCAAAGTTTCAAAGTACTAGAAGCCA 59.738 38.462 16.14 1.02 0.00 4.75
267 268 6.669278 CCAAAGTTTCAAAGTACTAGAAGCC 58.331 40.000 16.14 9.67 0.00 4.35
268 269 6.017026 AGCCAAAGTTTCAAAGTACTAGAAGC 60.017 38.462 13.50 13.50 0.00 3.86
269 270 7.012421 ACAGCCAAAGTTTCAAAGTACTAGAAG 59.988 37.037 0.00 0.00 0.00 2.85
270 271 6.826741 ACAGCCAAAGTTTCAAAGTACTAGAA 59.173 34.615 0.00 0.82 0.00 2.10
271 272 6.260050 CACAGCCAAAGTTTCAAAGTACTAGA 59.740 38.462 0.00 0.00 0.00 2.43
272 273 6.038271 ACACAGCCAAAGTTTCAAAGTACTAG 59.962 38.462 0.00 0.00 0.00 2.57
273 274 5.883673 ACACAGCCAAAGTTTCAAAGTACTA 59.116 36.000 0.00 0.00 0.00 1.82
274 275 4.705023 ACACAGCCAAAGTTTCAAAGTACT 59.295 37.500 0.00 0.00 0.00 2.73
275 276 4.798387 CACACAGCCAAAGTTTCAAAGTAC 59.202 41.667 0.00 0.00 0.00 2.73
276 277 4.676723 GCACACAGCCAAAGTTTCAAAGTA 60.677 41.667 0.00 0.00 37.23 2.24
277 278 3.848726 CACACAGCCAAAGTTTCAAAGT 58.151 40.909 0.00 0.00 0.00 2.66
278 279 2.604462 GCACACAGCCAAAGTTTCAAAG 59.396 45.455 0.00 0.00 37.23 2.77
279 280 2.028658 TGCACACAGCCAAAGTTTCAAA 60.029 40.909 0.00 0.00 44.83 2.69
280 281 1.547820 TGCACACAGCCAAAGTTTCAA 59.452 42.857 0.00 0.00 44.83 2.69
281 282 1.180907 TGCACACAGCCAAAGTTTCA 58.819 45.000 0.00 0.00 44.83 2.69
282 283 2.035066 AGATGCACACAGCCAAAGTTTC 59.965 45.455 0.00 0.00 44.83 2.78
283 284 2.034124 AGATGCACACAGCCAAAGTTT 58.966 42.857 0.00 0.00 44.83 2.66
284 285 1.696063 AGATGCACACAGCCAAAGTT 58.304 45.000 0.00 0.00 44.83 2.66
285 286 2.430465 CTAGATGCACACAGCCAAAGT 58.570 47.619 0.00 0.00 44.83 2.66
286 287 1.131883 GCTAGATGCACACAGCCAAAG 59.868 52.381 0.00 0.00 44.83 2.77
287 288 1.167851 GCTAGATGCACACAGCCAAA 58.832 50.000 0.00 0.00 44.83 3.28
288 289 0.325933 AGCTAGATGCACACAGCCAA 59.674 50.000 10.69 0.00 45.94 4.52
289 290 1.194218 TAGCTAGATGCACACAGCCA 58.806 50.000 10.69 0.00 45.94 4.75
290 291 2.141517 CATAGCTAGATGCACACAGCC 58.858 52.381 10.69 0.00 45.94 4.85
299 300 1.403914 CGGCCTCTGCATAGCTAGATG 60.404 57.143 0.00 0.00 40.13 2.90
300 301 0.894141 CGGCCTCTGCATAGCTAGAT 59.106 55.000 0.00 0.00 40.13 1.98
301 302 1.181741 CCGGCCTCTGCATAGCTAGA 61.182 60.000 0.00 0.00 40.13 2.43
302 303 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
303 304 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
304 305 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
305 306 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
306 307 1.762522 ATCACCCGGCCTCTGCATAG 61.763 60.000 0.00 0.00 40.13 2.23
307 308 1.758440 GATCACCCGGCCTCTGCATA 61.758 60.000 0.00 0.00 40.13 3.14
308 309 3.092511 ATCACCCGGCCTCTGCAT 61.093 61.111 0.00 0.00 40.13 3.96
309 310 3.785859 GATCACCCGGCCTCTGCA 61.786 66.667 0.00 0.00 40.13 4.41
310 311 2.543067 AAAGATCACCCGGCCTCTGC 62.543 60.000 0.00 0.00 0.00 4.26
311 312 0.745845 CAAAGATCACCCGGCCTCTG 60.746 60.000 0.00 0.00 0.00 3.35
312 313 0.909610 TCAAAGATCACCCGGCCTCT 60.910 55.000 0.00 0.00 0.00 3.69
313 314 0.181350 ATCAAAGATCACCCGGCCTC 59.819 55.000 0.00 0.00 0.00 4.70
314 315 0.107017 CATCAAAGATCACCCGGCCT 60.107 55.000 0.00 0.00 0.00 5.19
315 316 1.728490 GCATCAAAGATCACCCGGCC 61.728 60.000 0.00 0.00 0.00 6.13
316 317 1.729881 GCATCAAAGATCACCCGGC 59.270 57.895 0.00 0.00 0.00 6.13
317 318 1.439353 CCGCATCAAAGATCACCCGG 61.439 60.000 0.00 0.00 0.00 5.73
318 319 0.744414 ACCGCATCAAAGATCACCCG 60.744 55.000 0.00 0.00 0.00 5.28
319 320 1.133025 CAACCGCATCAAAGATCACCC 59.867 52.381 0.00 0.00 0.00 4.61
320 321 1.812571 ACAACCGCATCAAAGATCACC 59.187 47.619 0.00 0.00 0.00 4.02
321 322 4.332543 TGATACAACCGCATCAAAGATCAC 59.667 41.667 0.00 0.00 0.00 3.06
322 323 4.512484 TGATACAACCGCATCAAAGATCA 58.488 39.130 0.00 0.00 0.00 2.92
323 324 5.065218 AGTTGATACAACCGCATCAAAGATC 59.935 40.000 10.38 0.00 41.50 2.75
324 325 4.943705 AGTTGATACAACCGCATCAAAGAT 59.056 37.500 10.38 0.00 41.50 2.40
325 326 4.323417 AGTTGATACAACCGCATCAAAGA 58.677 39.130 10.38 0.00 41.50 2.52
326 327 4.651994 GAGTTGATACAACCGCATCAAAG 58.348 43.478 10.38 0.00 41.50 2.77
327 328 3.124466 CGAGTTGATACAACCGCATCAAA 59.876 43.478 10.38 0.00 41.50 2.69
328 329 2.670905 CGAGTTGATACAACCGCATCAA 59.329 45.455 10.38 0.00 38.50 2.57
329 330 2.094442 TCGAGTTGATACAACCGCATCA 60.094 45.455 10.38 0.00 0.00 3.07
330 331 2.536365 TCGAGTTGATACAACCGCATC 58.464 47.619 10.38 2.36 0.00 3.91
331 332 2.665649 TCGAGTTGATACAACCGCAT 57.334 45.000 10.38 0.00 0.00 4.73
332 333 2.665649 ATCGAGTTGATACAACCGCA 57.334 45.000 10.38 5.91 34.83 5.69
333 334 5.233476 TGAAATATCGAGTTGATACAACCGC 59.767 40.000 10.38 3.77 42.24 5.68
334 335 6.822073 TGAAATATCGAGTTGATACAACCG 57.178 37.500 10.38 12.67 42.24 4.44
335 336 9.651718 GAATTGAAATATCGAGTTGATACAACC 57.348 33.333 10.38 3.04 42.24 3.77
345 346 9.294030 GCTTTTCATTGAATTGAAATATCGAGT 57.706 29.630 0.00 0.00 43.20 4.18
346 347 8.749499 GGCTTTTCATTGAATTGAAATATCGAG 58.251 33.333 0.00 0.00 43.20 4.04
347 348 7.706179 GGGCTTTTCATTGAATTGAAATATCGA 59.294 33.333 0.00 0.00 43.20 3.59
348 349 7.707893 AGGGCTTTTCATTGAATTGAAATATCG 59.292 33.333 0.00 0.00 43.20 2.92
349 350 8.953368 AGGGCTTTTCATTGAATTGAAATATC 57.047 30.769 0.00 0.00 43.20 1.63
350 351 9.743581 AAAGGGCTTTTCATTGAATTGAAATAT 57.256 25.926 0.00 0.00 43.20 1.28
352 353 9.743581 ATAAAGGGCTTTTCATTGAATTGAAAT 57.256 25.926 0.00 0.00 43.20 2.17
353 354 9.218440 GATAAAGGGCTTTTCATTGAATTGAAA 57.782 29.630 0.00 0.00 42.33 2.69
354 355 7.545265 CGATAAAGGGCTTTTCATTGAATTGAA 59.455 33.333 0.00 0.00 34.23 2.69
355 356 7.035004 CGATAAAGGGCTTTTCATTGAATTGA 58.965 34.615 0.00 0.00 34.23 2.57
356 357 7.035004 TCGATAAAGGGCTTTTCATTGAATTG 58.965 34.615 0.00 0.00 34.23 2.32
357 358 7.122650 TCTCGATAAAGGGCTTTTCATTGAATT 59.877 33.333 0.00 0.00 34.23 2.17
358 359 6.603201 TCTCGATAAAGGGCTTTTCATTGAAT 59.397 34.615 0.00 0.00 34.23 2.57
359 360 5.943416 TCTCGATAAAGGGCTTTTCATTGAA 59.057 36.000 0.00 0.00 34.23 2.69
360 361 5.496556 TCTCGATAAAGGGCTTTTCATTGA 58.503 37.500 0.00 0.73 34.23 2.57
361 362 5.818136 TCTCGATAAAGGGCTTTTCATTG 57.182 39.130 0.00 0.00 34.23 2.82
362 363 6.834168 TTTCTCGATAAAGGGCTTTTCATT 57.166 33.333 0.00 0.00 34.23 2.57
363 364 6.834168 TTTTCTCGATAAAGGGCTTTTCAT 57.166 33.333 0.00 0.00 34.23 2.57
364 365 6.642707 TTTTTCTCGATAAAGGGCTTTTCA 57.357 33.333 0.00 0.00 34.23 2.69
400 401 6.299922 ACTTAGCTTTCTTTCTTAGGCAGTT 58.700 36.000 0.00 0.00 0.00 3.16
403 404 6.062095 ACAACTTAGCTTTCTTTCTTAGGCA 58.938 36.000 0.00 0.00 0.00 4.75
421 422 7.665559 TGGATAGACAGCTTCATTTAACAACTT 59.334 33.333 0.00 0.00 0.00 2.66
424 425 7.882791 TCTTGGATAGACAGCTTCATTTAACAA 59.117 33.333 0.00 0.00 0.00 2.83
445 446 8.251721 AGCATACTACTGTAGTTTAGTTCTTGG 58.748 37.037 24.09 5.11 40.14 3.61
507 508 8.806177 AATTTTTCATAACTGTTTCCGGTTAC 57.194 30.769 0.00 1.03 43.42 2.50
523 524 8.199449 CCATGGTTATCTGCAGTAATTTTTCAT 58.801 33.333 14.67 6.22 0.00 2.57
537 539 4.220382 TGCTTTTGGTTCCATGGTTATCTG 59.780 41.667 12.58 0.00 0.00 2.90
635 637 2.303549 ATTGCCCGGCTTCTCTCTCG 62.304 60.000 11.61 0.00 0.00 4.04
687 902 8.793592 GTGGTTAGTGTTCTTTTTCTATTGGAT 58.206 33.333 0.00 0.00 0.00 3.41
688 904 7.996644 AGTGGTTAGTGTTCTTTTTCTATTGGA 59.003 33.333 0.00 0.00 0.00 3.53
689 905 8.166422 AGTGGTTAGTGTTCTTTTTCTATTGG 57.834 34.615 0.00 0.00 0.00 3.16
708 924 3.275999 GTGGCGTTATATCCAAGTGGTT 58.724 45.455 0.00 0.00 33.57 3.67
813 1034 2.027561 AGGGTTGCGCTATTTGTACTCA 60.028 45.455 9.73 0.00 0.00 3.41
951 1223 7.095355 GCTCTTCTCGGCCGATTAATTAAATTA 60.095 37.037 31.19 0.27 0.00 1.40
952 1224 6.293462 GCTCTTCTCGGCCGATTAATTAAATT 60.293 38.462 31.19 0.00 0.00 1.82
953 1225 5.179555 GCTCTTCTCGGCCGATTAATTAAAT 59.820 40.000 31.19 0.00 0.00 1.40
954 1226 4.510340 GCTCTTCTCGGCCGATTAATTAAA 59.490 41.667 31.19 12.80 0.00 1.52
955 1227 4.056050 GCTCTTCTCGGCCGATTAATTAA 58.944 43.478 31.19 14.50 0.00 1.40
956 1228 3.069016 TGCTCTTCTCGGCCGATTAATTA 59.931 43.478 31.19 15.03 0.00 1.40
957 1229 2.158957 TGCTCTTCTCGGCCGATTAATT 60.159 45.455 31.19 0.00 0.00 1.40
958 1230 1.412710 TGCTCTTCTCGGCCGATTAAT 59.587 47.619 31.19 0.00 0.00 1.40
959 1231 0.821517 TGCTCTTCTCGGCCGATTAA 59.178 50.000 31.19 23.69 0.00 1.40
960 1232 0.385751 CTGCTCTTCTCGGCCGATTA 59.614 55.000 31.19 17.72 0.00 1.75
961 1233 1.142748 CTGCTCTTCTCGGCCGATT 59.857 57.895 31.19 0.00 0.00 3.34
962 1234 1.733402 CTCTGCTCTTCTCGGCCGAT 61.733 60.000 31.19 0.00 0.00 4.18
963 1235 2.361230 TCTGCTCTTCTCGGCCGA 60.361 61.111 29.03 29.03 0.00 5.54
964 1236 1.938657 TTCTCTGCTCTTCTCGGCCG 61.939 60.000 22.12 22.12 0.00 6.13
965 1237 0.179113 CTTCTCTGCTCTTCTCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
966 1238 0.530288 ACTTCTCTGCTCTTCTCGGC 59.470 55.000 0.00 0.00 0.00 5.54
967 1239 1.815613 TCACTTCTCTGCTCTTCTCGG 59.184 52.381 0.00 0.00 0.00 4.63
968 1240 2.731968 GCTCACTTCTCTGCTCTTCTCG 60.732 54.545 0.00 0.00 0.00 4.04
969 1241 2.230992 TGCTCACTTCTCTGCTCTTCTC 59.769 50.000 0.00 0.00 0.00 2.87
970 1242 2.246469 TGCTCACTTCTCTGCTCTTCT 58.754 47.619 0.00 0.00 0.00 2.85
971 1243 2.739885 TGCTCACTTCTCTGCTCTTC 57.260 50.000 0.00 0.00 0.00 2.87
972 1244 2.289569 CCTTGCTCACTTCTCTGCTCTT 60.290 50.000 0.00 0.00 0.00 2.85
973 1245 1.275856 CCTTGCTCACTTCTCTGCTCT 59.724 52.381 0.00 0.00 0.00 4.09
974 1246 1.001860 ACCTTGCTCACTTCTCTGCTC 59.998 52.381 0.00 0.00 0.00 4.26
975 1247 1.055040 ACCTTGCTCACTTCTCTGCT 58.945 50.000 0.00 0.00 0.00 4.24
976 1248 2.615869 CTACCTTGCTCACTTCTCTGC 58.384 52.381 0.00 0.00 0.00 4.26
977 1249 2.028658 TGCTACCTTGCTCACTTCTCTG 60.029 50.000 0.00 0.00 0.00 3.35
978 1250 2.251818 TGCTACCTTGCTCACTTCTCT 58.748 47.619 0.00 0.00 0.00 3.10
979 1251 2.751166 TGCTACCTTGCTCACTTCTC 57.249 50.000 0.00 0.00 0.00 2.87
980 1252 3.492102 TTTGCTACCTTGCTCACTTCT 57.508 42.857 0.00 0.00 0.00 2.85
981 1253 3.119708 CCATTTGCTACCTTGCTCACTTC 60.120 47.826 0.00 0.00 0.00 3.01
982 1254 2.821969 CCATTTGCTACCTTGCTCACTT 59.178 45.455 0.00 0.00 0.00 3.16
983 1255 2.440409 CCATTTGCTACCTTGCTCACT 58.560 47.619 0.00 0.00 0.00 3.41
984 1256 1.474077 CCCATTTGCTACCTTGCTCAC 59.526 52.381 0.00 0.00 0.00 3.51
985 1257 1.616725 CCCCATTTGCTACCTTGCTCA 60.617 52.381 0.00 0.00 0.00 4.26
986 1258 1.106285 CCCCATTTGCTACCTTGCTC 58.894 55.000 0.00 0.00 0.00 4.26
987 1259 0.704076 TCCCCATTTGCTACCTTGCT 59.296 50.000 0.00 0.00 0.00 3.91
988 1260 1.106285 CTCCCCATTTGCTACCTTGC 58.894 55.000 0.00 0.00 0.00 4.01
989 1261 1.005924 ACCTCCCCATTTGCTACCTTG 59.994 52.381 0.00 0.00 0.00 3.61
990 1262 1.285078 GACCTCCCCATTTGCTACCTT 59.715 52.381 0.00 0.00 0.00 3.50
991 1263 0.919710 GACCTCCCCATTTGCTACCT 59.080 55.000 0.00 0.00 0.00 3.08
992 1264 0.919710 AGACCTCCCCATTTGCTACC 59.080 55.000 0.00 0.00 0.00 3.18
993 1265 1.134068 GGAGACCTCCCCATTTGCTAC 60.134 57.143 4.72 0.00 43.94 3.58
994 1266 1.213296 GGAGACCTCCCCATTTGCTA 58.787 55.000 4.72 0.00 43.94 3.49
995 1267 2.002625 GGAGACCTCCCCATTTGCT 58.997 57.895 4.72 0.00 43.94 3.91
996 1268 4.666105 GGAGACCTCCCCATTTGC 57.334 61.111 4.72 0.00 43.94 3.68
1047 1319 2.060980 GTCCTCCTCTGCCGTCCAT 61.061 63.158 0.00 0.00 0.00 3.41
1056 1328 0.326048 CCAGGGTCATGTCCTCCTCT 60.326 60.000 8.93 0.00 31.06 3.69
1503 1805 1.129326 CTGTGTTCTCCAACGACGAC 58.871 55.000 0.00 0.00 34.95 4.34
1521 1823 2.428890 CTCCTCCGATGTAAAGCTGTCT 59.571 50.000 0.00 0.00 0.00 3.41
1740 2054 1.739338 AACTAGCCGAGGAGCCGATG 61.739 60.000 0.00 0.00 0.00 3.84
1841 2168 2.550830 TGTTCCCTTCACAAGCTCTC 57.449 50.000 0.00 0.00 0.00 3.20
1921 2249 6.801539 TGTAGGCATACAACAAAGAAGAAG 57.198 37.500 9.11 0.00 38.97 2.85
1922 2250 6.995686 TCTTGTAGGCATACAACAAAGAAGAA 59.004 34.615 19.31 0.00 44.94 2.52
1923 2251 6.530120 TCTTGTAGGCATACAACAAAGAAGA 58.470 36.000 19.31 10.76 44.94 2.87
2044 2386 2.032071 CCCCTCCACGGTGACAAC 59.968 66.667 10.28 0.00 0.00 3.32
2073 2417 0.478072 TCACTGGGGAAAGCACACAT 59.522 50.000 0.00 0.00 0.00 3.21
2078 2422 2.429930 CGGTCACTGGGGAAAGCA 59.570 61.111 0.00 0.00 0.00 3.91
2079 2423 2.359975 CCGGTCACTGGGGAAAGC 60.360 66.667 0.00 0.00 0.00 3.51
2126 2470 1.674980 GACGACCGGACTGTCTCCT 60.675 63.158 9.46 0.00 36.80 3.69
2127 2471 2.698763 GGACGACCGGACTGTCTCC 61.699 68.421 9.46 1.85 35.33 3.71
2185 4161 5.873179 AGTGACTTTGACGAAAAACTTCA 57.127 34.783 0.00 0.00 0.00 3.02
2186 4162 7.461918 ACTTAGTGACTTTGACGAAAAACTTC 58.538 34.615 0.00 0.00 0.00 3.01
2187 4163 7.373778 ACTTAGTGACTTTGACGAAAAACTT 57.626 32.000 0.00 0.00 0.00 2.66
2188 4164 6.980051 ACTTAGTGACTTTGACGAAAAACT 57.020 33.333 0.00 0.00 0.00 2.66
2189 4165 7.342942 CCTACTTAGTGACTTTGACGAAAAAC 58.657 38.462 0.00 0.00 0.00 2.43
2190 4166 6.480981 CCCTACTTAGTGACTTTGACGAAAAA 59.519 38.462 0.00 0.00 0.00 1.94
2195 4177 4.778534 TCCCTACTTAGTGACTTTGACG 57.221 45.455 0.00 0.00 0.00 4.35
2230 4212 3.309410 GCCACAAACACAAACTCAAATGG 59.691 43.478 0.00 0.00 0.00 3.16
2232 4214 4.470334 AGCCACAAACACAAACTCAAAT 57.530 36.364 0.00 0.00 0.00 2.32
2275 4257 4.329462 TGGAACATTTTGCACCCTAAAC 57.671 40.909 0.00 0.00 0.00 2.01
2389 4374 9.786105 ACCAAAAGTAAAGATTTTGCATTTTTG 57.214 25.926 5.79 8.62 43.24 2.44
2449 4434 5.639506 TCAATCAAAGGTTTTGTTTTTGCGA 59.360 32.000 1.92 0.00 33.10 5.10
2464 4449 0.527113 TGCCATGGCGTCAATCAAAG 59.473 50.000 30.87 0.00 45.51 2.77
2488 4478 4.099573 TCTTGAGGAAAGACAACTCGAGTT 59.900 41.667 24.93 24.93 40.09 3.01
2521 4511 5.417894 TGGAGGCTACATACATTACTATCGG 59.582 44.000 0.00 0.00 0.00 4.18
2535 4525 4.901197 TGTATCTTTGTTGGAGGCTACA 57.099 40.909 0.00 0.00 0.00 2.74
2536 4526 6.759497 ATTTGTATCTTTGTTGGAGGCTAC 57.241 37.500 0.00 0.00 0.00 3.58
2700 4696 9.143155 TGTAGGTGATGATTAGCTTGTAGAATA 57.857 33.333 0.00 0.00 0.00 1.75
2701 4697 8.023021 TGTAGGTGATGATTAGCTTGTAGAAT 57.977 34.615 0.00 0.00 0.00 2.40
2702 4698 7.418337 TGTAGGTGATGATTAGCTTGTAGAA 57.582 36.000 0.00 0.00 0.00 2.10
2703 4699 7.522236 CGATGTAGGTGATGATTAGCTTGTAGA 60.522 40.741 0.00 0.00 0.00 2.59
2704 4700 6.584184 CGATGTAGGTGATGATTAGCTTGTAG 59.416 42.308 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.