Multiple sequence alignment - TraesCS6B01G256200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G256200 chr6B 100.000 2627 0 0 1 2627 460205606 460208232 0.000000e+00 4852.0
1 TraesCS6B01G256200 chr6B 100.000 2234 0 0 3136 5369 460208741 460210974 0.000000e+00 4126.0
2 TraesCS6B01G256200 chr6B 89.712 972 89 8 4322 5284 237633321 237632352 0.000000e+00 1230.0
3 TraesCS6B01G256200 chr6B 82.843 781 103 18 3560 4322 460275819 460276586 0.000000e+00 671.0
4 TraesCS6B01G256200 chr6B 93.197 441 26 4 1 439 1944910 1945348 0.000000e+00 645.0
5 TraesCS6B01G256200 chr6B 74.161 596 125 20 3696 4274 687956449 687957032 2.520000e-53 220.0
6 TraesCS6B01G256200 chr6D 95.479 1858 59 7 444 2280 296827135 296825282 0.000000e+00 2942.0
7 TraesCS6B01G256200 chr6D 97.497 879 12 2 3447 4322 296825275 296824404 0.000000e+00 1493.0
8 TraesCS6B01G256200 chr6D 82.203 826 116 17 3515 4322 296752970 296752158 0.000000e+00 682.0
9 TraesCS6B01G256200 chr6D 92.809 445 29 3 1 443 398169372 398169815 4.530000e-180 641.0
10 TraesCS6B01G256200 chr6D 92.045 440 33 2 1 439 29754184 29754622 7.640000e-173 617.0
11 TraesCS6B01G256200 chr6D 74.658 584 120 19 3707 4274 452907794 452908365 3.230000e-57 233.0
12 TraesCS6B01G256200 chr6A 94.419 1523 44 18 726 2224 423535841 423534336 0.000000e+00 2303.0
13 TraesCS6B01G256200 chr6A 97.062 885 10 3 3447 4322 423534306 423533429 0.000000e+00 1476.0
14 TraesCS6B01G256200 chr6A 81.745 871 122 22 3473 4322 423523162 423522308 0.000000e+00 693.0
15 TraesCS6B01G256200 chr6A 91.832 453 33 3 1 452 607695428 607695877 3.530000e-176 628.0
16 TraesCS6B01G256200 chr6A 93.780 209 13 0 494 702 423536040 423535832 1.120000e-81 315.0
17 TraesCS6B01G256200 chr6A 79.310 203 41 1 3238 3440 370679751 370679550 2.020000e-29 141.0
18 TraesCS6B01G256200 chr4B 90.862 974 69 16 4322 5284 106787752 106786788 0.000000e+00 1288.0
19 TraesCS6B01G256200 chr4B 89.836 974 79 14 4322 5284 106792814 106791850 0.000000e+00 1232.0
20 TraesCS6B01G256200 chr2B 90.476 966 78 10 4322 5277 417056075 417055114 0.000000e+00 1262.0
21 TraesCS6B01G256200 chr2B 90.236 973 81 10 4322 5284 417047556 417046588 0.000000e+00 1258.0
22 TraesCS6B01G256200 chr2B 94.524 347 18 1 2280 2626 764045917 764046262 7.920000e-148 534.0
23 TraesCS6B01G256200 chr2B 92.683 287 20 1 3153 3439 764046725 764047010 3.870000e-111 412.0
24 TraesCS6B01G256200 chr3B 89.609 972 89 9 4322 5284 105469124 105470092 0.000000e+00 1225.0
25 TraesCS6B01G256200 chr3B 86.830 1063 120 17 4322 5369 417437740 417436683 0.000000e+00 1170.0
26 TraesCS6B01G256200 chr3B 92.917 240 16 1 3203 3442 778704119 778703881 1.110000e-91 348.0
27 TraesCS6B01G256200 chr7D 87.417 1057 116 12 4322 5368 163520285 163519236 0.000000e+00 1199.0
28 TraesCS6B01G256200 chr7D 92.938 439 29 2 1 438 595981485 595981048 5.860000e-179 638.0
29 TraesCS6B01G256200 chr7D 91.741 448 35 2 1 447 112244675 112244229 5.910000e-174 621.0
30 TraesCS6B01G256200 chr7D 90.152 264 24 2 2282 2545 528890805 528890544 5.150000e-90 342.0
31 TraesCS6B01G256200 chr7D 93.182 44 3 0 1778 1821 87996757 87996800 1.250000e-06 65.8
32 TraesCS6B01G256200 chr7D 97.222 36 1 0 3890 3925 194224804 194224839 1.610000e-05 62.1
33 TraesCS6B01G256200 chr7B 86.911 1062 119 16 4322 5369 509791379 509790324 0.000000e+00 1173.0
34 TraesCS6B01G256200 chr7B 94.704 321 17 0 2280 2600 355869991 355869671 2.890000e-137 499.0
35 TraesCS6B01G256200 chr7B 93.358 271 17 1 3169 3438 355868622 355868352 3.010000e-107 399.0
36 TraesCS6B01G256200 chr1D 92.955 440 30 1 1 439 492979610 492980049 1.630000e-179 640.0
37 TraesCS6B01G256200 chr1D 92.500 440 32 1 1 439 418221386 418221825 3.530000e-176 628.0
38 TraesCS6B01G256200 chr1D 93.182 44 3 0 1778 1821 17628678 17628721 1.250000e-06 65.8
39 TraesCS6B01G256200 chr5D 92.428 449 31 2 1 446 420994759 420995207 5.860000e-179 638.0
40 TraesCS6B01G256200 chr5D 82.902 193 33 0 3248 3440 125115456 125115648 1.990000e-39 174.0
41 TraesCS6B01G256200 chr5D 73.651 482 111 10 3789 4264 362868753 362868282 7.150000e-39 172.0
42 TraesCS6B01G256200 chr5D 71.860 430 78 34 3894 4296 72902696 72902283 3.450000e-12 84.2
43 TraesCS6B01G256200 chr5D 94.737 38 1 1 1509 1546 447432357 447432321 2.090000e-04 58.4
44 TraesCS6B01G256200 chr5D 96.875 32 0 1 3887 3917 480751633 480751602 1.000000e-02 52.8
45 TraesCS6B01G256200 chr4A 95.181 332 16 0 2284 2615 742278756 742279087 4.760000e-145 525.0
46 TraesCS6B01G256200 chr4A 93.724 239 15 0 3200 3438 742279922 742280160 5.110000e-95 359.0
47 TraesCS6B01G256200 chr5B 92.878 337 23 1 2280 2615 636907895 636908231 6.250000e-134 488.0
48 TraesCS6B01G256200 chr5B 94.142 239 14 0 3200 3438 636908997 636909235 1.100000e-96 364.0
49 TraesCS6B01G256200 chr5B 83.191 351 45 9 2279 2617 477730533 477730881 5.220000e-80 309.0
50 TraesCS6B01G256200 chr5B 73.805 481 112 7 3789 4264 429067902 429067431 1.540000e-40 178.0
51 TraesCS6B01G256200 chr5B 71.618 828 178 47 1073 1879 115413033 115413824 1.990000e-39 174.0
52 TraesCS6B01G256200 chr5B 94.737 38 1 1 1509 1546 545923681 545923645 2.090000e-04 58.4
53 TraesCS6B01G256200 chr5B 96.875 32 0 1 3887 3917 589229511 589229480 1.000000e-02 52.8
54 TraesCS6B01G256200 chr1B 92.355 327 25 0 2282 2608 340369216 340368890 2.930000e-127 466.0
55 TraesCS6B01G256200 chr1B 88.103 311 28 8 3136 3439 340368145 340367837 1.420000e-95 361.0
56 TraesCS6B01G256200 chr1B 80.193 207 39 2 5164 5369 665655584 665655789 2.590000e-33 154.0
57 TraesCS6B01G256200 chr7A 89.058 329 28 3 2282 2610 501656462 501656142 8.380000e-108 401.0
58 TraesCS6B01G256200 chr7A 97.222 36 1 0 3890 3925 203863903 203863938 1.610000e-05 62.1
59 TraesCS6B01G256200 chr1A 84.795 342 34 9 2282 2623 482816562 482816239 1.440000e-85 327.0
60 TraesCS6B01G256200 chr1A 79.085 306 50 12 3139 3442 545906448 545906155 1.180000e-46 198.0
61 TraesCS6B01G256200 chr1A 71.525 295 70 12 1613 1900 19892273 19892560 3.470000e-07 67.6
62 TraesCS6B01G256200 chr5A 88.571 210 24 0 3227 3436 367192514 367192723 6.900000e-64 255.0
63 TraesCS6B01G256200 chr5A 71.773 829 175 46 1073 1879 109957130 109957921 4.270000e-41 180.0
64 TraesCS6B01G256200 chr5A 96.875 32 0 1 3887 3917 599979392 599979361 1.000000e-02 52.8
65 TraesCS6B01G256200 chr3A 89.216 204 22 0 3236 3439 486207377 486207174 6.900000e-64 255.0
66 TraesCS6B01G256200 chr3A 81.548 168 31 0 3274 3441 233904583 233904416 7.250000e-29 139.0
67 TraesCS6B01G256200 chr3A 96.875 32 1 0 3894 3925 18969300 18969269 3.000000e-03 54.7
68 TraesCS6B01G256200 chr4D 88.608 79 5 3 4182 4258 84545771 84545695 5.730000e-15 93.5
69 TraesCS6B01G256200 chrUn 74.667 225 43 10 4044 4258 37382343 37382123 2.660000e-13 87.9
70 TraesCS6B01G256200 chrUn 96.875 32 1 0 3894 3925 37382502 37382471 3.000000e-03 54.7
71 TraesCS6B01G256200 chr3D 100.000 29 0 0 3894 3922 17842894 17842922 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G256200 chr6B 460205606 460210974 5368 False 4489.000000 4852 100.0000 1 5369 2 chr6B.!!$F4 5368
1 TraesCS6B01G256200 chr6B 237632352 237633321 969 True 1230.000000 1230 89.7120 4322 5284 1 chr6B.!!$R1 962
2 TraesCS6B01G256200 chr6B 460275819 460276586 767 False 671.000000 671 82.8430 3560 4322 1 chr6B.!!$F2 762
3 TraesCS6B01G256200 chr6B 687956449 687957032 583 False 220.000000 220 74.1610 3696 4274 1 chr6B.!!$F3 578
4 TraesCS6B01G256200 chr6D 296824404 296827135 2731 True 2217.500000 2942 96.4880 444 4322 2 chr6D.!!$R2 3878
5 TraesCS6B01G256200 chr6D 296752158 296752970 812 True 682.000000 682 82.2030 3515 4322 1 chr6D.!!$R1 807
6 TraesCS6B01G256200 chr6D 452907794 452908365 571 False 233.000000 233 74.6580 3707 4274 1 chr6D.!!$F3 567
7 TraesCS6B01G256200 chr6A 423533429 423536040 2611 True 1364.666667 2303 95.0870 494 4322 3 chr6A.!!$R3 3828
8 TraesCS6B01G256200 chr6A 423522308 423523162 854 True 693.000000 693 81.7450 3473 4322 1 chr6A.!!$R2 849
9 TraesCS6B01G256200 chr4B 106786788 106787752 964 True 1288.000000 1288 90.8620 4322 5284 1 chr4B.!!$R1 962
10 TraesCS6B01G256200 chr4B 106791850 106792814 964 True 1232.000000 1232 89.8360 4322 5284 1 chr4B.!!$R2 962
11 TraesCS6B01G256200 chr2B 417055114 417056075 961 True 1262.000000 1262 90.4760 4322 5277 1 chr2B.!!$R2 955
12 TraesCS6B01G256200 chr2B 417046588 417047556 968 True 1258.000000 1258 90.2360 4322 5284 1 chr2B.!!$R1 962
13 TraesCS6B01G256200 chr2B 764045917 764047010 1093 False 473.000000 534 93.6035 2280 3439 2 chr2B.!!$F1 1159
14 TraesCS6B01G256200 chr3B 105469124 105470092 968 False 1225.000000 1225 89.6090 4322 5284 1 chr3B.!!$F1 962
15 TraesCS6B01G256200 chr3B 417436683 417437740 1057 True 1170.000000 1170 86.8300 4322 5369 1 chr3B.!!$R1 1047
16 TraesCS6B01G256200 chr7D 163519236 163520285 1049 True 1199.000000 1199 87.4170 4322 5368 1 chr7D.!!$R2 1046
17 TraesCS6B01G256200 chr7B 509790324 509791379 1055 True 1173.000000 1173 86.9110 4322 5369 1 chr7B.!!$R1 1047
18 TraesCS6B01G256200 chr7B 355868352 355869991 1639 True 449.000000 499 94.0310 2280 3438 2 chr7B.!!$R2 1158
19 TraesCS6B01G256200 chr4A 742278756 742280160 1404 False 442.000000 525 94.4525 2284 3438 2 chr4A.!!$F1 1154
20 TraesCS6B01G256200 chr5B 636907895 636909235 1340 False 426.000000 488 93.5100 2280 3438 2 chr5B.!!$F3 1158
21 TraesCS6B01G256200 chr1B 340367837 340369216 1379 True 413.500000 466 90.2290 2282 3439 2 chr1B.!!$R1 1157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 440 0.034337 ATGCGGACTACCAAACACGT 59.966 50.0 0.00 0.0 35.59 4.49 F
1026 1045 0.036765 TTACCTTGATCGCCGTGCTT 60.037 50.0 0.00 0.0 0.00 3.91 F
2071 2103 0.037303 CCTGCATCAACACTCCTGGT 59.963 55.0 0.00 0.0 0.00 4.00 F
2218 2254 2.038295 CTCTGCTCTCCCAAGAACAAGT 59.962 50.0 0.00 0.0 27.54 3.16 F
3413 4468 2.875087 TTTTAGTGCGCGGCTAGATA 57.125 45.0 8.83 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1590 0.031585 CTCCTCAAACACCACGTCGA 59.968 55.000 0.00 0.0 0.00 4.20 R
2298 2337 0.953960 CGCGTCCCTAATATTGGGCC 60.954 60.000 12.26 0.0 44.23 5.80 R
3413 4468 0.108424 GCATCTCCAACAGACGCTCT 60.108 55.000 0.00 0.0 37.36 4.09 R
3415 4470 1.978473 AGCATCTCCAACAGACGCT 59.022 52.632 0.00 0.0 46.07 5.07 R
5072 6166 0.108585 TCCAGAAGGTTGGTGCTGAC 59.891 55.000 0.00 0.0 39.35 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.821589 GCGGCCCGAGTTCTGGAG 62.822 72.222 7.68 0.00 0.00 3.86
23 24 4.821589 CGGCCCGAGTTCTGGAGC 62.822 72.222 0.00 0.00 0.00 4.70
24 25 4.475135 GGCCCGAGTTCTGGAGCC 62.475 72.222 0.00 0.00 36.25 4.70
25 26 4.475135 GCCCGAGTTCTGGAGCCC 62.475 72.222 0.00 0.00 0.00 5.19
26 27 4.148825 CCCGAGTTCTGGAGCCCG 62.149 72.222 0.00 0.00 0.00 6.13
27 28 4.148825 CCGAGTTCTGGAGCCCGG 62.149 72.222 0.00 0.00 0.00 5.73
28 29 4.821589 CGAGTTCTGGAGCCCGGC 62.822 72.222 0.00 0.00 0.00 6.13
29 30 4.475135 GAGTTCTGGAGCCCGGCC 62.475 72.222 5.55 0.00 0.00 6.13
51 52 4.172512 AGCGCTCCTGGATGCTGG 62.173 66.667 19.24 3.55 36.09 4.85
54 55 4.166888 GCTCCTGGATGCTGGCGA 62.167 66.667 5.18 0.00 0.00 5.54
55 56 2.827423 CTCCTGGATGCTGGCGAT 59.173 61.111 5.18 0.00 0.00 4.58
56 57 1.597302 CTCCTGGATGCTGGCGATG 60.597 63.158 5.18 0.00 0.00 3.84
57 58 3.285215 CCTGGATGCTGGCGATGC 61.285 66.667 0.00 0.00 0.00 3.91
58 59 3.646976 CTGGATGCTGGCGATGCG 61.647 66.667 0.00 0.00 0.00 4.73
76 77 3.760035 CTGGTCGACCGGGGTCAG 61.760 72.222 32.28 18.04 44.77 3.51
77 78 4.289101 TGGTCGACCGGGGTCAGA 62.289 66.667 28.70 6.50 44.77 3.27
78 79 3.450115 GGTCGACCGGGGTCAGAG 61.450 72.222 20.85 2.16 44.77 3.35
79 80 3.450115 GTCGACCGGGGTCAGAGG 61.450 72.222 17.43 1.81 44.77 3.69
80 81 4.753662 TCGACCGGGGTCAGAGGG 62.754 72.222 17.43 1.46 44.77 4.30
118 119 3.531207 CGGAGCCATCGGAGCAGA 61.531 66.667 0.00 0.00 0.00 4.26
119 120 2.420890 GGAGCCATCGGAGCAGAG 59.579 66.667 0.00 0.00 0.00 3.35
120 121 2.420890 GAGCCATCGGAGCAGAGG 59.579 66.667 0.00 0.00 0.00 3.69
121 122 2.042537 AGCCATCGGAGCAGAGGA 60.043 61.111 0.00 0.00 0.00 3.71
122 123 2.086251 GAGCCATCGGAGCAGAGGAG 62.086 65.000 0.00 0.00 0.00 3.69
123 124 2.130426 GCCATCGGAGCAGAGGAGA 61.130 63.158 0.00 0.00 0.00 3.71
124 125 2.040330 CCATCGGAGCAGAGGAGAG 58.960 63.158 0.00 0.00 0.00 3.20
125 126 1.462731 CCATCGGAGCAGAGGAGAGG 61.463 65.000 0.00 0.00 0.00 3.69
126 127 0.467106 CATCGGAGCAGAGGAGAGGA 60.467 60.000 0.00 0.00 0.00 3.71
127 128 0.178992 ATCGGAGCAGAGGAGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
128 129 1.225983 CGGAGCAGAGGAGAGGAGA 59.774 63.158 0.00 0.00 0.00 3.71
129 130 0.819259 CGGAGCAGAGGAGAGGAGAG 60.819 65.000 0.00 0.00 0.00 3.20
130 131 0.468029 GGAGCAGAGGAGAGGAGAGG 60.468 65.000 0.00 0.00 0.00 3.69
131 132 0.468029 GAGCAGAGGAGAGGAGAGGG 60.468 65.000 0.00 0.00 0.00 4.30
132 133 0.923729 AGCAGAGGAGAGGAGAGGGA 60.924 60.000 0.00 0.00 0.00 4.20
133 134 0.468029 GCAGAGGAGAGGAGAGGGAG 60.468 65.000 0.00 0.00 0.00 4.30
134 135 0.185901 CAGAGGAGAGGAGAGGGAGG 59.814 65.000 0.00 0.00 0.00 4.30
135 136 0.998945 AGAGGAGAGGAGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
136 137 2.018086 AGGAGAGGAGAGGGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
137 138 2.123033 GAGAGGAGAGGGAGGGGC 60.123 72.222 0.00 0.00 0.00 5.80
138 139 4.150454 AGAGGAGAGGGAGGGGCG 62.150 72.222 0.00 0.00 0.00 6.13
142 143 4.779733 GAGAGGGAGGGGCGGTGA 62.780 72.222 0.00 0.00 0.00 4.02
143 144 4.787280 AGAGGGAGGGGCGGTGAG 62.787 72.222 0.00 0.00 0.00 3.51
148 149 4.779733 GAGGGGCGGTGAGGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
149 150 4.787280 AGGGGCGGTGAGGGAGAG 62.787 72.222 0.00 0.00 0.00 3.20
150 151 4.779733 GGGGCGGTGAGGGAGAGA 62.780 72.222 0.00 0.00 0.00 3.10
151 152 3.151022 GGGCGGTGAGGGAGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
152 153 2.043852 GGCGGTGAGGGAGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
153 154 2.124693 GGCGGTGAGGGAGAGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
154 155 2.124693 GCGGTGAGGGAGAGAGAGG 61.125 68.421 0.00 0.00 0.00 3.69
155 156 1.454847 CGGTGAGGGAGAGAGAGGG 60.455 68.421 0.00 0.00 0.00 4.30
156 157 1.927569 CGGTGAGGGAGAGAGAGGGA 61.928 65.000 0.00 0.00 0.00 4.20
157 158 0.106217 GGTGAGGGAGAGAGAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
158 159 0.755327 GTGAGGGAGAGAGAGGGAGC 60.755 65.000 0.00 0.00 0.00 4.70
159 160 1.528309 GAGGGAGAGAGAGGGAGCG 60.528 68.421 0.00 0.00 0.00 5.03
160 161 2.520741 GGGAGAGAGAGGGAGCGG 60.521 72.222 0.00 0.00 0.00 5.52
161 162 2.277404 GGAGAGAGAGGGAGCGGT 59.723 66.667 0.00 0.00 0.00 5.68
162 163 2.124693 GGAGAGAGAGGGAGCGGTG 61.125 68.421 0.00 0.00 0.00 4.94
163 164 2.043450 AGAGAGAGGGAGCGGTGG 60.043 66.667 0.00 0.00 0.00 4.61
164 165 3.151022 GAGAGAGGGAGCGGTGGG 61.151 72.222 0.00 0.00 0.00 4.61
165 166 3.663815 GAGAGAGGGAGCGGTGGGA 62.664 68.421 0.00 0.00 0.00 4.37
166 167 2.683933 GAGAGGGAGCGGTGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
167 168 3.003763 AGAGGGAGCGGTGGGAAC 61.004 66.667 0.00 0.00 0.00 3.62
168 169 3.319198 GAGGGAGCGGTGGGAACA 61.319 66.667 0.00 0.00 38.70 3.18
169 170 3.316573 GAGGGAGCGGTGGGAACAG 62.317 68.421 0.00 0.00 44.46 3.16
170 171 3.637273 GGGAGCGGTGGGAACAGT 61.637 66.667 0.00 0.00 44.46 3.55
171 172 2.358737 GGAGCGGTGGGAACAGTG 60.359 66.667 0.00 0.00 44.46 3.66
172 173 2.426023 GAGCGGTGGGAACAGTGT 59.574 61.111 0.00 0.00 44.46 3.55
173 174 1.961277 GAGCGGTGGGAACAGTGTG 60.961 63.158 0.00 0.00 44.46 3.82
174 175 3.660111 GCGGTGGGAACAGTGTGC 61.660 66.667 0.00 0.00 44.46 4.57
175 176 2.203139 CGGTGGGAACAGTGTGCA 60.203 61.111 3.00 0.00 44.46 4.57
176 177 1.600636 CGGTGGGAACAGTGTGCAT 60.601 57.895 3.00 0.00 44.46 3.96
177 178 1.855213 CGGTGGGAACAGTGTGCATG 61.855 60.000 3.00 0.00 44.46 4.06
178 179 1.526575 GGTGGGAACAGTGTGCATGG 61.527 60.000 3.00 0.00 44.46 3.66
179 180 1.228521 TGGGAACAGTGTGCATGGG 60.229 57.895 3.00 0.00 35.01 4.00
180 181 2.639327 GGGAACAGTGTGCATGGGC 61.639 63.158 3.00 0.00 41.68 5.36
181 182 2.562912 GAACAGTGTGCATGGGCG 59.437 61.111 0.00 0.00 45.35 6.13
182 183 2.981560 GAACAGTGTGCATGGGCGG 61.982 63.158 0.00 0.00 45.35 6.13
183 184 3.790416 AACAGTGTGCATGGGCGGT 62.790 57.895 0.00 0.00 45.35 5.68
184 185 3.740397 CAGTGTGCATGGGCGGTG 61.740 66.667 0.00 0.00 45.35 4.94
185 186 3.952508 AGTGTGCATGGGCGGTGA 61.953 61.111 0.00 0.00 45.35 4.02
186 187 3.737172 GTGTGCATGGGCGGTGAC 61.737 66.667 0.00 0.00 45.35 3.67
187 188 4.262089 TGTGCATGGGCGGTGACA 62.262 61.111 0.00 0.00 45.35 3.58
188 189 3.434319 GTGCATGGGCGGTGACAG 61.434 66.667 0.00 0.00 45.35 3.51
189 190 4.720902 TGCATGGGCGGTGACAGG 62.721 66.667 0.00 0.00 45.35 4.00
190 191 4.408821 GCATGGGCGGTGACAGGA 62.409 66.667 0.00 0.00 0.00 3.86
191 192 2.124983 CATGGGCGGTGACAGGAG 60.125 66.667 0.00 0.00 0.00 3.69
192 193 2.284625 ATGGGCGGTGACAGGAGA 60.285 61.111 0.00 0.00 0.00 3.71
193 194 2.362369 ATGGGCGGTGACAGGAGAG 61.362 63.158 0.00 0.00 0.00 3.20
194 195 2.997897 GGGCGGTGACAGGAGAGT 60.998 66.667 0.00 0.00 0.00 3.24
195 196 2.262915 GGCGGTGACAGGAGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
196 197 2.262915 GCGGTGACAGGAGAGTGG 59.737 66.667 0.00 0.00 0.00 4.00
197 198 2.973899 CGGTGACAGGAGAGTGGG 59.026 66.667 0.00 0.00 0.00 4.61
198 199 2.650116 CGGTGACAGGAGAGTGGGG 61.650 68.421 0.00 0.00 0.00 4.96
199 200 2.294078 GGTGACAGGAGAGTGGGGG 61.294 68.421 0.00 0.00 0.00 5.40
214 215 1.067582 GGGGGCGAGTAATGAGACG 59.932 63.158 0.00 0.00 0.00 4.18
215 216 1.673808 GGGGGCGAGTAATGAGACGT 61.674 60.000 0.00 0.00 0.00 4.34
216 217 0.248949 GGGGCGAGTAATGAGACGTC 60.249 60.000 7.70 7.70 0.00 4.34
217 218 0.591741 GGGCGAGTAATGAGACGTCG 60.592 60.000 10.46 0.00 0.00 5.12
219 220 2.856089 CGAGTAATGAGACGTCGCC 58.144 57.895 16.94 10.19 0.00 5.54
220 221 0.377554 CGAGTAATGAGACGTCGCCT 59.622 55.000 16.94 6.18 0.00 5.52
221 222 1.595003 CGAGTAATGAGACGTCGCCTC 60.595 57.143 16.94 13.71 0.00 4.70
222 223 0.739561 AGTAATGAGACGTCGCCTCC 59.260 55.000 16.94 2.38 0.00 4.30
223 224 0.591741 GTAATGAGACGTCGCCTCCG 60.592 60.000 16.94 0.00 0.00 4.63
224 225 1.028330 TAATGAGACGTCGCCTCCGT 61.028 55.000 16.94 0.00 42.06 4.69
250 251 3.414700 CTGCCCGAGACGTGCAAC 61.415 66.667 0.00 0.00 39.91 4.17
251 252 3.865929 CTGCCCGAGACGTGCAACT 62.866 63.158 0.00 0.00 39.91 3.16
252 253 3.414700 GCCCGAGACGTGCAACTG 61.415 66.667 0.00 0.00 29.43 3.16
253 254 3.414700 CCCGAGACGTGCAACTGC 61.415 66.667 0.00 0.00 42.50 4.40
254 255 3.414700 CCGAGACGTGCAACTGCC 61.415 66.667 0.00 0.00 41.18 4.85
255 256 3.414700 CGAGACGTGCAACTGCCC 61.415 66.667 0.00 0.00 41.18 5.36
256 257 3.050275 GAGACGTGCAACTGCCCC 61.050 66.667 0.00 0.00 41.18 5.80
257 258 4.988598 AGACGTGCAACTGCCCCG 62.989 66.667 0.00 8.71 41.18 5.73
295 296 2.507992 CAGGCTCGCGAGGAACTG 60.508 66.667 35.10 21.43 41.55 3.16
296 297 4.443266 AGGCTCGCGAGGAACTGC 62.443 66.667 35.10 21.46 41.55 4.40
299 300 4.116328 CTCGCGAGGAACTGCCGA 62.116 66.667 28.40 0.00 41.55 5.54
300 301 3.417275 CTCGCGAGGAACTGCCGAT 62.417 63.158 28.40 0.00 41.55 4.18
301 302 2.509336 CGCGAGGAACTGCCGATT 60.509 61.111 0.00 0.00 41.55 3.34
302 303 2.517450 CGCGAGGAACTGCCGATTC 61.517 63.158 0.00 0.00 41.55 2.52
303 304 2.517450 GCGAGGAACTGCCGATTCG 61.517 63.158 0.00 0.00 41.55 3.34
304 305 1.138883 CGAGGAACTGCCGATTCGA 59.861 57.895 7.83 0.00 41.55 3.71
305 306 0.249073 CGAGGAACTGCCGATTCGAT 60.249 55.000 7.83 0.00 41.55 3.59
306 307 1.001706 CGAGGAACTGCCGATTCGATA 60.002 52.381 7.83 0.00 41.55 2.92
307 308 2.667137 GAGGAACTGCCGATTCGATAG 58.333 52.381 7.83 7.71 41.55 2.08
308 309 2.032620 AGGAACTGCCGATTCGATAGT 58.967 47.619 7.83 8.35 43.43 2.12
309 310 2.431057 AGGAACTGCCGATTCGATAGTT 59.569 45.455 20.26 20.26 43.43 2.24
310 311 3.118738 AGGAACTGCCGATTCGATAGTTT 60.119 43.478 20.75 9.81 43.43 2.66
311 312 3.245519 GGAACTGCCGATTCGATAGTTTC 59.754 47.826 20.75 17.41 34.80 2.78
312 313 3.802948 ACTGCCGATTCGATAGTTTCT 57.197 42.857 7.83 0.00 37.40 2.52
313 314 3.448686 ACTGCCGATTCGATAGTTTCTG 58.551 45.455 7.83 0.00 37.40 3.02
314 315 3.119101 ACTGCCGATTCGATAGTTTCTGT 60.119 43.478 7.83 0.00 37.40 3.41
315 316 3.444916 TGCCGATTCGATAGTTTCTGTC 58.555 45.455 7.83 0.00 37.40 3.51
316 317 2.468040 GCCGATTCGATAGTTTCTGTCG 59.532 50.000 7.83 9.05 44.32 4.35
317 318 3.043586 CCGATTCGATAGTTTCTGTCGG 58.956 50.000 7.83 0.00 43.42 4.79
318 319 3.043586 CGATTCGATAGTTTCTGTCGGG 58.956 50.000 13.83 1.46 43.42 5.14
319 320 2.288961 TTCGATAGTTTCTGTCGGGC 57.711 50.000 13.83 0.00 43.42 6.13
320 321 0.458669 TCGATAGTTTCTGTCGGGCC 59.541 55.000 13.83 0.00 43.42 5.80
321 322 0.174845 CGATAGTTTCTGTCGGGCCA 59.825 55.000 4.39 0.00 40.47 5.36
322 323 1.802880 CGATAGTTTCTGTCGGGCCAG 60.803 57.143 4.39 0.00 40.47 4.85
323 324 0.541863 ATAGTTTCTGTCGGGCCAGG 59.458 55.000 4.39 0.00 33.14 4.45
324 325 2.180159 TAGTTTCTGTCGGGCCAGGC 62.180 60.000 4.39 1.26 33.14 4.85
325 326 3.249189 TTTCTGTCGGGCCAGGCT 61.249 61.111 12.43 0.00 33.14 4.58
326 327 3.551496 TTTCTGTCGGGCCAGGCTG 62.551 63.158 12.43 8.71 33.14 4.85
339 340 2.987547 GGCTGCAGGCTGCTTTGA 60.988 61.111 36.50 18.21 45.31 2.69
340 341 2.567497 GGCTGCAGGCTGCTTTGAA 61.567 57.895 36.50 17.83 45.31 2.69
341 342 1.080705 GCTGCAGGCTGCTTTGAAG 60.081 57.895 36.50 26.29 45.31 3.02
342 343 1.803366 GCTGCAGGCTGCTTTGAAGT 61.803 55.000 36.50 0.00 45.31 3.01
343 344 0.672342 CTGCAGGCTGCTTTGAAGTT 59.328 50.000 36.50 0.00 45.31 2.66
344 345 0.670162 TGCAGGCTGCTTTGAAGTTC 59.330 50.000 36.50 7.71 45.31 3.01
345 346 0.386478 GCAGGCTGCTTTGAAGTTCG 60.386 55.000 31.37 0.00 40.96 3.95
346 347 0.947244 CAGGCTGCTTTGAAGTTCGT 59.053 50.000 0.00 0.00 0.00 3.85
347 348 0.947244 AGGCTGCTTTGAAGTTCGTG 59.053 50.000 0.00 0.00 0.00 4.35
348 349 0.661483 GGCTGCTTTGAAGTTCGTGC 60.661 55.000 0.00 3.29 0.00 5.34
349 350 0.993746 GCTGCTTTGAAGTTCGTGCG 60.994 55.000 0.00 1.53 0.00 5.34
350 351 0.384725 CTGCTTTGAAGTTCGTGCGG 60.385 55.000 0.00 3.99 0.00 5.69
351 352 1.725973 GCTTTGAAGTTCGTGCGGC 60.726 57.895 0.00 0.00 0.00 6.53
352 353 1.082104 CTTTGAAGTTCGTGCGGCC 60.082 57.895 0.00 0.00 0.00 6.13
353 354 1.507141 CTTTGAAGTTCGTGCGGCCT 61.507 55.000 0.00 0.00 0.00 5.19
354 355 1.503818 TTTGAAGTTCGTGCGGCCTC 61.504 55.000 0.00 0.00 0.00 4.70
355 356 2.357034 GAAGTTCGTGCGGCCTCA 60.357 61.111 0.00 0.00 0.00 3.86
356 357 1.959226 GAAGTTCGTGCGGCCTCAA 60.959 57.895 0.00 0.00 0.00 3.02
357 358 1.503818 GAAGTTCGTGCGGCCTCAAA 61.504 55.000 0.00 0.00 0.00 2.69
358 359 1.782028 AAGTTCGTGCGGCCTCAAAC 61.782 55.000 0.00 0.00 0.00 2.93
359 360 2.975799 TTCGTGCGGCCTCAAACC 60.976 61.111 0.00 0.00 0.00 3.27
365 366 4.481112 CGGCCTCAAACCGCATGC 62.481 66.667 7.91 7.91 44.90 4.06
366 367 3.372730 GGCCTCAAACCGCATGCA 61.373 61.111 19.57 0.00 0.00 3.96
367 368 2.180017 GCCTCAAACCGCATGCAG 59.820 61.111 19.57 9.32 0.00 4.41
368 369 2.180017 CCTCAAACCGCATGCAGC 59.820 61.111 19.57 0.00 40.87 5.25
369 370 2.180017 CTCAAACCGCATGCAGCC 59.820 61.111 19.57 0.00 41.38 4.85
370 371 3.346631 CTCAAACCGCATGCAGCCC 62.347 63.158 19.57 0.00 41.38 5.19
371 372 3.682885 CAAACCGCATGCAGCCCA 61.683 61.111 19.57 0.00 41.38 5.36
372 373 3.376078 AAACCGCATGCAGCCCAG 61.376 61.111 19.57 0.00 41.38 4.45
377 378 4.446413 GCATGCAGCCCAGCCAAC 62.446 66.667 14.21 0.00 37.23 3.77
378 379 3.766691 CATGCAGCCCAGCCAACC 61.767 66.667 0.00 0.00 0.00 3.77
379 380 4.304413 ATGCAGCCCAGCCAACCA 62.304 61.111 0.00 0.00 0.00 3.67
380 381 3.831727 ATGCAGCCCAGCCAACCAA 62.832 57.895 0.00 0.00 0.00 3.67
381 382 3.233231 GCAGCCCAGCCAACCAAA 61.233 61.111 0.00 0.00 0.00 3.28
382 383 2.586293 GCAGCCCAGCCAACCAAAT 61.586 57.895 0.00 0.00 0.00 2.32
383 384 1.257055 GCAGCCCAGCCAACCAAATA 61.257 55.000 0.00 0.00 0.00 1.40
384 385 0.819582 CAGCCCAGCCAACCAAATAG 59.180 55.000 0.00 0.00 0.00 1.73
385 386 0.704076 AGCCCAGCCAACCAAATAGA 59.296 50.000 0.00 0.00 0.00 1.98
386 387 0.817654 GCCCAGCCAACCAAATAGAC 59.182 55.000 0.00 0.00 0.00 2.59
387 388 1.474330 CCCAGCCAACCAAATAGACC 58.526 55.000 0.00 0.00 0.00 3.85
388 389 1.272425 CCCAGCCAACCAAATAGACCA 60.272 52.381 0.00 0.00 0.00 4.02
389 390 2.624029 CCCAGCCAACCAAATAGACCAT 60.624 50.000 0.00 0.00 0.00 3.55
390 391 2.428171 CCAGCCAACCAAATAGACCATG 59.572 50.000 0.00 0.00 0.00 3.66
391 392 2.102578 AGCCAACCAAATAGACCATGC 58.897 47.619 0.00 0.00 0.00 4.06
392 393 1.824230 GCCAACCAAATAGACCATGCA 59.176 47.619 0.00 0.00 0.00 3.96
393 394 2.417243 GCCAACCAAATAGACCATGCAC 60.417 50.000 0.00 0.00 0.00 4.57
394 395 2.824936 CCAACCAAATAGACCATGCACA 59.175 45.455 0.00 0.00 0.00 4.57
395 396 3.448301 CCAACCAAATAGACCATGCACAT 59.552 43.478 0.00 0.00 0.00 3.21
396 397 4.440525 CCAACCAAATAGACCATGCACATC 60.441 45.833 0.00 0.00 0.00 3.06
397 398 4.240881 ACCAAATAGACCATGCACATCT 57.759 40.909 0.00 0.00 0.00 2.90
398 399 4.202441 ACCAAATAGACCATGCACATCTC 58.798 43.478 0.00 0.00 0.00 2.75
399 400 3.249320 CCAAATAGACCATGCACATCTCG 59.751 47.826 0.00 0.00 0.00 4.04
400 401 2.160822 ATAGACCATGCACATCTCGC 57.839 50.000 0.00 0.00 0.00 5.03
401 402 0.249031 TAGACCATGCACATCTCGCG 60.249 55.000 0.00 0.00 0.00 5.87
402 403 3.160557 GACCATGCACATCTCGCGC 62.161 63.158 0.00 0.00 0.00 6.86
403 404 4.289379 CCATGCACATCTCGCGCG 62.289 66.667 26.76 26.76 0.00 6.86
404 405 4.289379 CATGCACATCTCGCGCGG 62.289 66.667 31.69 20.60 0.00 6.46
423 424 3.518003 CCTGGTTAGGCTGCATGC 58.482 61.111 11.82 11.82 37.25 4.06
424 425 2.475466 CCTGGTTAGGCTGCATGCG 61.475 63.158 14.09 9.16 44.05 4.73
425 426 2.438254 TGGTTAGGCTGCATGCGG 60.438 61.111 22.66 22.66 44.05 5.69
426 427 2.124736 GGTTAGGCTGCATGCGGA 60.125 61.111 30.67 6.49 44.05 5.54
427 428 2.472909 GGTTAGGCTGCATGCGGAC 61.473 63.158 30.67 28.32 44.05 4.79
428 429 1.450312 GTTAGGCTGCATGCGGACT 60.450 57.895 36.23 36.23 44.17 3.85
429 430 0.179084 GTTAGGCTGCATGCGGACTA 60.179 55.000 33.96 33.96 41.66 2.59
430 431 0.179084 TTAGGCTGCATGCGGACTAC 60.179 55.000 36.71 19.47 42.19 2.73
431 432 2.028125 TAGGCTGCATGCGGACTACC 62.028 60.000 33.96 22.60 41.66 3.18
432 433 2.125147 GCTGCATGCGGACTACCA 60.125 61.111 30.67 0.00 35.59 3.25
433 434 1.745115 GCTGCATGCGGACTACCAA 60.745 57.895 30.67 0.00 35.59 3.67
434 435 1.305219 GCTGCATGCGGACTACCAAA 61.305 55.000 30.67 0.00 35.59 3.28
435 436 0.447801 CTGCATGCGGACTACCAAAC 59.552 55.000 22.55 0.00 35.59 2.93
436 437 0.250510 TGCATGCGGACTACCAAACA 60.251 50.000 14.09 0.00 35.59 2.83
437 438 0.168128 GCATGCGGACTACCAAACAC 59.832 55.000 0.00 0.00 35.59 3.32
438 439 0.442310 CATGCGGACTACCAAACACG 59.558 55.000 0.00 0.00 35.59 4.49
439 440 0.034337 ATGCGGACTACCAAACACGT 59.966 50.000 0.00 0.00 35.59 4.49
440 441 0.598158 TGCGGACTACCAAACACGTC 60.598 55.000 0.00 0.00 35.59 4.34
441 442 1.287041 GCGGACTACCAAACACGTCC 61.287 60.000 0.00 0.00 41.89 4.79
442 443 0.316204 CGGACTACCAAACACGTCCT 59.684 55.000 0.00 0.00 42.86 3.85
443 444 1.541147 CGGACTACCAAACACGTCCTA 59.459 52.381 0.00 0.00 42.86 2.94
444 445 2.030007 CGGACTACCAAACACGTCCTAA 60.030 50.000 0.00 0.00 42.86 2.69
445 446 3.582780 GGACTACCAAACACGTCCTAAG 58.417 50.000 0.00 0.00 42.02 2.18
446 447 3.006217 GGACTACCAAACACGTCCTAAGT 59.994 47.826 0.00 0.00 42.02 2.24
477 478 5.187687 CCTTTCCGGTAAAATAGTAAGGCA 58.812 41.667 0.00 0.00 0.00 4.75
489 490 0.317479 GTAAGGCAGACCGTGTGAGT 59.683 55.000 0.00 0.00 42.76 3.41
563 564 1.322538 AAATCATGAACGGCTGGCCC 61.323 55.000 0.00 0.00 0.00 5.80
657 665 1.296001 CGCGTCTCTGTCGAGTACG 60.296 63.158 0.00 0.00 40.49 3.67
690 698 4.401925 AGCTTCAACAAAGTAGGCATTCT 58.598 39.130 0.00 0.00 37.31 2.40
709 717 4.537135 TCTCATGTACACTCCTTTGTCC 57.463 45.455 0.00 0.00 0.00 4.02
759 767 2.230994 GAGTCCTGCCGCATCAGTCA 62.231 60.000 0.00 0.00 32.32 3.41
809 823 0.395312 TTGGACGGTTGGAGAGAACC 59.605 55.000 0.00 0.00 41.89 3.62
818 832 3.769844 GGTTGGAGAGAACCTGTAGATCA 59.230 47.826 0.00 0.00 42.03 2.92
819 833 4.223032 GGTTGGAGAGAACCTGTAGATCAA 59.777 45.833 0.00 0.00 42.03 2.57
822 836 3.769844 GGAGAGAACCTGTAGATCAACCA 59.230 47.826 0.00 0.00 0.00 3.67
903 917 6.306837 CAGAATCGTCGCTAGATATTTCCTTC 59.693 42.308 0.00 0.00 0.00 3.46
1026 1045 0.036765 TTACCTTGATCGCCGTGCTT 60.037 50.000 0.00 0.00 0.00 3.91
1236 1261 4.131088 GTCGAGGTCCTGGGCGTC 62.131 72.222 10.84 10.84 0.00 5.19
1423 1448 2.045242 TCGCCTACGTGAGCTCCT 60.045 61.111 12.15 0.00 41.18 3.69
1424 1449 2.054140 CTCGCCTACGTGAGCTCCTC 62.054 65.000 12.15 3.53 39.65 3.71
1428 1453 1.030488 CCTACGTGAGCTCCTCGGAA 61.030 60.000 24.62 15.08 36.21 4.30
1429 1454 0.809385 CTACGTGAGCTCCTCGGAAA 59.191 55.000 24.62 13.27 36.21 3.13
1565 1590 1.991230 CCAGGGGGATCAACTCGTT 59.009 57.895 0.00 0.00 35.59 3.85
1946 1972 8.012957 TCCTATCCTACTTGAGATGAACTTTC 57.987 38.462 0.00 0.00 0.00 2.62
1958 1984 1.278238 GAACTTTCGTCCGCATCGAT 58.722 50.000 0.00 0.00 37.18 3.59
1981 2007 4.736793 TCGGTCGACGCTATAAGAAATTTC 59.263 41.667 10.33 10.33 43.86 2.17
2068 2100 1.279271 GGTACCTGCATCAACACTCCT 59.721 52.381 4.06 0.00 0.00 3.69
2071 2103 0.037303 CCTGCATCAACACTCCTGGT 59.963 55.000 0.00 0.00 0.00 4.00
2218 2254 2.038295 CTCTGCTCTCCCAAGAACAAGT 59.962 50.000 0.00 0.00 27.54 3.16
2228 2264 7.612677 TCTCCCAAGAACAAGTAGTATTTCTC 58.387 38.462 0.00 0.00 0.00 2.87
2229 2265 6.395629 TCCCAAGAACAAGTAGTATTTCTCG 58.604 40.000 0.00 0.00 0.00 4.04
2230 2266 5.581085 CCCAAGAACAAGTAGTATTTCTCGG 59.419 44.000 0.00 0.00 0.00 4.63
2231 2267 6.395629 CCAAGAACAAGTAGTATTTCTCGGA 58.604 40.000 0.00 0.00 25.12 4.55
2232 2268 6.872020 CCAAGAACAAGTAGTATTTCTCGGAA 59.128 38.462 0.00 0.00 25.12 4.30
2311 2351 3.138283 TCCAACAGAGGCCCAATATTAGG 59.862 47.826 0.00 0.00 0.00 2.69
2399 2439 5.006649 TGCATAATAGAGCACGCTGTAAAAG 59.993 40.000 0.00 0.00 35.51 2.27
3371 4426 3.416382 GTCCGGCGCGCTAAAACA 61.416 61.111 32.29 6.32 0.00 2.83
3413 4468 2.875087 TTTTAGTGCGCGGCTAGATA 57.125 45.000 8.83 0.00 0.00 1.98
3415 4470 1.601166 TTAGTGCGCGGCTAGATAGA 58.399 50.000 8.83 0.00 0.00 1.98
3439 4494 3.129462 CGTCTGTTGGAGATGCTCTAAGA 59.871 47.826 0.00 0.00 31.92 2.10
3440 4495 4.380973 CGTCTGTTGGAGATGCTCTAAGAA 60.381 45.833 0.00 0.00 31.92 2.52
3441 4496 5.669477 GTCTGTTGGAGATGCTCTAAGAAT 58.331 41.667 0.00 0.00 31.92 2.40
3442 4497 5.752955 GTCTGTTGGAGATGCTCTAAGAATC 59.247 44.000 0.00 0.00 31.92 2.52
3443 4498 5.660417 TCTGTTGGAGATGCTCTAAGAATCT 59.340 40.000 0.00 0.00 43.33 2.40
3444 4499 6.155910 TCTGTTGGAGATGCTCTAAGAATCTT 59.844 38.462 0.00 0.00 40.71 2.40
3445 4500 7.343057 TCTGTTGGAGATGCTCTAAGAATCTTA 59.657 37.037 2.44 2.44 40.71 2.10
3750 4805 1.376037 CCTCAAGGACAGCCGAACC 60.376 63.158 0.00 0.00 39.96 3.62
3886 4947 2.286425 AGGTGGAGGTCCCCATGG 60.286 66.667 4.14 4.14 38.66 3.66
3887 4948 4.129148 GGTGGAGGTCCCCATGGC 62.129 72.222 6.09 0.00 38.66 4.40
3888 4949 4.129148 GTGGAGGTCCCCATGGCC 62.129 72.222 6.09 1.87 38.66 5.36
3891 4952 3.105928 GAGGTCCCCATGGCCCAT 61.106 66.667 6.09 0.00 0.00 4.00
3892 4953 3.432335 AGGTCCCCATGGCCCATG 61.432 66.667 17.16 17.16 41.10 3.66
4119 5198 3.470888 CGACTTCGGGGCCTCCAT 61.471 66.667 0.84 0.00 35.37 3.41
4358 5437 1.228215 TCACCGTGTACCCTCGACA 60.228 57.895 0.00 0.00 0.00 4.35
4397 5476 0.036448 TCTCACGTCGAAGGAGACCT 59.964 55.000 12.82 0.00 37.85 3.85
4665 5752 3.676172 GTGTTATTCAATCGGTCGTCACA 59.324 43.478 0.00 0.00 0.00 3.58
4794 5881 1.617947 GGATGTCCGGCTCAAGACCT 61.618 60.000 0.00 0.00 31.76 3.85
4867 5954 3.210232 AGAATCCTCATACGACCTCGA 57.790 47.619 0.78 0.00 43.02 4.04
4917 6007 1.914634 GTCTCGACGAGATGCACAAT 58.085 50.000 28.81 0.00 40.98 2.71
4921 6011 3.123453 TCTCGACGAGATGCACAATTTTG 59.877 43.478 23.27 0.00 33.35 2.44
4957 6047 8.324306 ACTTTTTGATCTGAGGTCATATTGAGA 58.676 33.333 0.00 0.00 0.00 3.27
5072 6166 2.029666 GACCCAGATCATCCGGCG 59.970 66.667 0.00 0.00 0.00 6.46
5154 6251 1.679139 GATGATCCGGCCAACATTGA 58.321 50.000 2.24 0.00 0.00 2.57
5219 6317 9.664332 CTTGGATAGGGACAATCTTTATATCAG 57.336 37.037 0.00 0.00 0.00 2.90
5232 6330 8.888579 ATCTTTATATCAGAATCGTCCGTTTT 57.111 30.769 0.00 0.00 0.00 2.43
5305 6403 3.217242 GGCGTGATCAGCCGAATAT 57.783 52.632 16.94 0.00 45.58 1.28
5315 6413 5.294306 TGATCAGCCGAATATTGTTCTGAAC 59.706 40.000 13.49 13.49 34.72 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.821589 CTCCAGAACTCGGGCCGC 62.822 72.222 23.83 7.19 0.00 6.53
6 7 4.821589 GCTCCAGAACTCGGGCCG 62.822 72.222 22.51 22.51 0.00 6.13
9 10 4.148825 CGGGCTCCAGAACTCGGG 62.149 72.222 0.00 0.00 0.00 5.14
11 12 4.821589 GCCGGGCTCCAGAACTCG 62.822 72.222 12.87 0.00 0.00 4.18
32 33 4.172512 AGCATCCAGGAGCGCTGG 62.173 66.667 18.48 12.12 43.06 4.85
33 34 2.895865 CAGCATCCAGGAGCGCTG 60.896 66.667 23.04 23.04 45.17 5.18
34 35 4.172512 CCAGCATCCAGGAGCGCT 62.173 66.667 11.27 11.27 35.48 5.92
37 38 3.472943 ATCGCCAGCATCCAGGAGC 62.473 63.158 0.00 0.00 0.00 4.70
38 39 1.597302 CATCGCCAGCATCCAGGAG 60.597 63.158 0.00 0.00 0.00 3.69
39 40 2.507452 CATCGCCAGCATCCAGGA 59.493 61.111 0.00 0.00 0.00 3.86
40 41 3.285215 GCATCGCCAGCATCCAGG 61.285 66.667 0.00 0.00 0.00 4.45
41 42 3.646976 CGCATCGCCAGCATCCAG 61.647 66.667 0.00 0.00 0.00 3.86
101 102 3.496875 CTCTGCTCCGATGGCTCCG 62.497 68.421 0.00 0.00 0.00 4.63
102 103 2.420890 CTCTGCTCCGATGGCTCC 59.579 66.667 0.00 0.00 0.00 4.70
103 104 2.086251 CTCCTCTGCTCCGATGGCTC 62.086 65.000 0.00 0.00 0.00 4.70
104 105 2.042537 TCCTCTGCTCCGATGGCT 60.043 61.111 0.00 0.00 0.00 4.75
105 106 2.086251 CTCTCCTCTGCTCCGATGGC 62.086 65.000 0.00 0.00 0.00 4.40
106 107 1.462731 CCTCTCCTCTGCTCCGATGG 61.463 65.000 0.00 0.00 0.00 3.51
107 108 0.467106 TCCTCTCCTCTGCTCCGATG 60.467 60.000 0.00 0.00 0.00 3.84
108 109 0.178992 CTCCTCTCCTCTGCTCCGAT 60.179 60.000 0.00 0.00 0.00 4.18
109 110 1.225983 CTCCTCTCCTCTGCTCCGA 59.774 63.158 0.00 0.00 0.00 4.55
110 111 0.819259 CTCTCCTCTCCTCTGCTCCG 60.819 65.000 0.00 0.00 0.00 4.63
111 112 0.468029 CCTCTCCTCTCCTCTGCTCC 60.468 65.000 0.00 0.00 0.00 4.70
112 113 0.468029 CCCTCTCCTCTCCTCTGCTC 60.468 65.000 0.00 0.00 0.00 4.26
113 114 0.923729 TCCCTCTCCTCTCCTCTGCT 60.924 60.000 0.00 0.00 0.00 4.24
114 115 0.468029 CTCCCTCTCCTCTCCTCTGC 60.468 65.000 0.00 0.00 0.00 4.26
115 116 0.185901 CCTCCCTCTCCTCTCCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
116 117 0.998945 CCCTCCCTCTCCTCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
117 118 1.541672 CCCTCCCTCTCCTCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
118 119 2.018086 CCCCTCCCTCTCCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
119 120 2.612251 CCCCTCCCTCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
120 121 2.123033 GCCCCTCCCTCTCCTCTC 60.123 72.222 0.00 0.00 0.00 3.20
121 122 4.150454 CGCCCCTCCCTCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
125 126 4.779733 TCACCGCCCCTCCCTCTC 62.780 72.222 0.00 0.00 0.00 3.20
126 127 4.787280 CTCACCGCCCCTCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
131 132 4.779733 TCTCCCTCACCGCCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
132 133 4.787280 CTCTCCCTCACCGCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
133 134 4.779733 TCTCTCCCTCACCGCCCC 62.780 72.222 0.00 0.00 0.00 5.80
134 135 3.151022 CTCTCTCCCTCACCGCCC 61.151 72.222 0.00 0.00 0.00 6.13
135 136 2.043852 TCTCTCTCCCTCACCGCC 60.044 66.667 0.00 0.00 0.00 6.13
136 137 2.124693 CCTCTCTCTCCCTCACCGC 61.125 68.421 0.00 0.00 0.00 5.68
137 138 1.454847 CCCTCTCTCTCCCTCACCG 60.455 68.421 0.00 0.00 0.00 4.94
138 139 0.106217 CTCCCTCTCTCTCCCTCACC 60.106 65.000 0.00 0.00 0.00 4.02
139 140 0.755327 GCTCCCTCTCTCTCCCTCAC 60.755 65.000 0.00 0.00 0.00 3.51
140 141 1.618030 GCTCCCTCTCTCTCCCTCA 59.382 63.158 0.00 0.00 0.00 3.86
141 142 1.528309 CGCTCCCTCTCTCTCCCTC 60.528 68.421 0.00 0.00 0.00 4.30
142 143 2.600731 CGCTCCCTCTCTCTCCCT 59.399 66.667 0.00 0.00 0.00 4.20
143 144 2.520741 CCGCTCCCTCTCTCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
144 145 2.124693 CACCGCTCCCTCTCTCTCC 61.125 68.421 0.00 0.00 0.00 3.71
145 146 2.124693 CCACCGCTCCCTCTCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
146 147 2.043450 CCACCGCTCCCTCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
147 148 3.151022 CCCACCGCTCCCTCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
148 149 3.239627 TTCCCACCGCTCCCTCTCT 62.240 63.158 0.00 0.00 0.00 3.10
149 150 2.683933 TTCCCACCGCTCCCTCTC 60.684 66.667 0.00 0.00 0.00 3.20
150 151 3.003763 GTTCCCACCGCTCCCTCT 61.004 66.667 0.00 0.00 0.00 3.69
151 152 3.316573 CTGTTCCCACCGCTCCCTC 62.317 68.421 0.00 0.00 0.00 4.30
152 153 3.322466 CTGTTCCCACCGCTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
153 154 3.637273 ACTGTTCCCACCGCTCCC 61.637 66.667 0.00 0.00 0.00 4.30
154 155 2.358737 CACTGTTCCCACCGCTCC 60.359 66.667 0.00 0.00 0.00 4.70
155 156 1.961277 CACACTGTTCCCACCGCTC 60.961 63.158 0.00 0.00 0.00 5.03
156 157 2.111043 CACACTGTTCCCACCGCT 59.889 61.111 0.00 0.00 0.00 5.52
157 158 3.660111 GCACACTGTTCCCACCGC 61.660 66.667 0.00 0.00 0.00 5.68
158 159 1.600636 ATGCACACTGTTCCCACCG 60.601 57.895 0.00 0.00 0.00 4.94
159 160 1.526575 CCATGCACACTGTTCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
160 161 1.526575 CCCATGCACACTGTTCCCAC 61.527 60.000 0.00 0.00 0.00 4.61
161 162 1.228521 CCCATGCACACTGTTCCCA 60.229 57.895 0.00 0.00 0.00 4.37
162 163 2.639327 GCCCATGCACACTGTTCCC 61.639 63.158 0.00 0.00 37.47 3.97
163 164 2.964978 GCCCATGCACACTGTTCC 59.035 61.111 0.00 0.00 37.47 3.62
164 165 2.562912 CGCCCATGCACACTGTTC 59.437 61.111 0.00 0.00 37.32 3.18
165 166 2.985282 CCGCCCATGCACACTGTT 60.985 61.111 0.00 0.00 37.32 3.16
166 167 4.269523 ACCGCCCATGCACACTGT 62.270 61.111 0.00 0.00 37.32 3.55
167 168 3.740397 CACCGCCCATGCACACTG 61.740 66.667 0.00 0.00 37.32 3.66
168 169 3.952508 TCACCGCCCATGCACACT 61.953 61.111 0.00 0.00 37.32 3.55
169 170 3.737172 GTCACCGCCCATGCACAC 61.737 66.667 0.00 0.00 37.32 3.82
170 171 4.262089 TGTCACCGCCCATGCACA 62.262 61.111 0.00 0.00 37.32 4.57
171 172 3.434319 CTGTCACCGCCCATGCAC 61.434 66.667 0.00 0.00 37.32 4.57
172 173 4.720902 CCTGTCACCGCCCATGCA 62.721 66.667 0.00 0.00 37.32 3.96
173 174 4.408821 TCCTGTCACCGCCCATGC 62.409 66.667 0.00 0.00 0.00 4.06
174 175 2.124983 CTCCTGTCACCGCCCATG 60.125 66.667 0.00 0.00 0.00 3.66
175 176 2.284625 TCTCCTGTCACCGCCCAT 60.285 61.111 0.00 0.00 0.00 4.00
176 177 2.997315 CTCTCCTGTCACCGCCCA 60.997 66.667 0.00 0.00 0.00 5.36
177 178 2.997897 ACTCTCCTGTCACCGCCC 60.998 66.667 0.00 0.00 0.00 6.13
178 179 2.262915 CACTCTCCTGTCACCGCC 59.737 66.667 0.00 0.00 0.00 6.13
179 180 2.262915 CCACTCTCCTGTCACCGC 59.737 66.667 0.00 0.00 0.00 5.68
180 181 2.650116 CCCCACTCTCCTGTCACCG 61.650 68.421 0.00 0.00 0.00 4.94
181 182 2.294078 CCCCCACTCTCCTGTCACC 61.294 68.421 0.00 0.00 0.00 4.02
182 183 3.393360 CCCCCACTCTCCTGTCAC 58.607 66.667 0.00 0.00 0.00 3.67
196 197 1.067582 CGTCTCATTACTCGCCCCC 59.932 63.158 0.00 0.00 0.00 5.40
197 198 0.248949 GACGTCTCATTACTCGCCCC 60.249 60.000 8.70 0.00 0.00 5.80
198 199 0.591741 CGACGTCTCATTACTCGCCC 60.592 60.000 14.70 0.00 0.00 6.13
199 200 1.201098 GCGACGTCTCATTACTCGCC 61.201 60.000 14.70 0.00 38.71 5.54
200 201 1.201098 GGCGACGTCTCATTACTCGC 61.201 60.000 14.70 8.96 41.26 5.03
201 202 0.377554 AGGCGACGTCTCATTACTCG 59.622 55.000 14.70 0.00 0.00 4.18
202 203 1.268640 GGAGGCGACGTCTCATTACTC 60.269 57.143 28.89 8.47 35.78 2.59
203 204 0.739561 GGAGGCGACGTCTCATTACT 59.260 55.000 28.89 0.00 35.78 2.24
204 205 0.591741 CGGAGGCGACGTCTCATTAC 60.592 60.000 28.89 11.99 35.78 1.89
205 206 1.028330 ACGGAGGCGACGTCTCATTA 61.028 55.000 28.89 0.00 41.25 1.90
206 207 2.341101 ACGGAGGCGACGTCTCATT 61.341 57.895 28.89 13.44 41.25 2.57
207 208 2.750637 ACGGAGGCGACGTCTCAT 60.751 61.111 28.89 14.95 41.25 2.90
236 237 3.414700 GCAGTTGCACGTCTCGGG 61.415 66.667 0.00 0.00 41.59 5.14
237 238 3.414700 GGCAGTTGCACGTCTCGG 61.415 66.667 6.43 0.00 44.36 4.63
238 239 3.414700 GGGCAGTTGCACGTCTCG 61.415 66.667 6.43 0.00 44.36 4.04
277 278 3.764466 AGTTCCTCGCGAGCCTGG 61.764 66.667 30.49 18.08 0.00 4.45
278 279 2.507992 CAGTTCCTCGCGAGCCTG 60.508 66.667 30.49 26.80 0.00 4.85
279 280 4.443266 GCAGTTCCTCGCGAGCCT 62.443 66.667 30.49 20.83 0.00 4.58
282 283 2.890847 AATCGGCAGTTCCTCGCGAG 62.891 60.000 29.06 29.06 0.00 5.03
283 284 2.884087 GAATCGGCAGTTCCTCGCGA 62.884 60.000 9.26 9.26 0.00 5.87
284 285 2.509336 AATCGGCAGTTCCTCGCG 60.509 61.111 0.00 0.00 0.00 5.87
285 286 2.517450 CGAATCGGCAGTTCCTCGC 61.517 63.158 0.00 0.00 0.00 5.03
286 287 0.249073 ATCGAATCGGCAGTTCCTCG 60.249 55.000 1.76 0.00 32.99 4.63
287 288 2.034812 ACTATCGAATCGGCAGTTCCTC 59.965 50.000 1.76 0.00 0.00 3.71
288 289 2.032620 ACTATCGAATCGGCAGTTCCT 58.967 47.619 1.76 0.00 0.00 3.36
289 290 2.510768 ACTATCGAATCGGCAGTTCC 57.489 50.000 1.76 0.00 0.00 3.62
290 291 4.026475 CAGAAACTATCGAATCGGCAGTTC 60.026 45.833 18.03 13.17 33.06 3.01
291 292 3.865745 CAGAAACTATCGAATCGGCAGTT 59.134 43.478 14.02 14.02 34.62 3.16
292 293 3.119101 ACAGAAACTATCGAATCGGCAGT 60.119 43.478 1.76 3.51 0.00 4.40
293 294 3.448686 ACAGAAACTATCGAATCGGCAG 58.551 45.455 1.76 2.83 0.00 4.85
294 295 3.444916 GACAGAAACTATCGAATCGGCA 58.555 45.455 1.76 0.00 0.00 5.69
295 296 2.468040 CGACAGAAACTATCGAATCGGC 59.532 50.000 1.76 0.00 38.10 5.54
296 297 3.043586 CCGACAGAAACTATCGAATCGG 58.956 50.000 1.76 0.00 41.75 4.18
297 298 3.043586 CCCGACAGAAACTATCGAATCG 58.956 50.000 0.00 0.00 38.10 3.34
298 299 2.795470 GCCCGACAGAAACTATCGAATC 59.205 50.000 1.01 0.00 38.10 2.52
299 300 2.483188 GGCCCGACAGAAACTATCGAAT 60.483 50.000 1.01 0.00 38.10 3.34
300 301 1.134907 GGCCCGACAGAAACTATCGAA 60.135 52.381 1.01 0.00 38.10 3.71
301 302 0.458669 GGCCCGACAGAAACTATCGA 59.541 55.000 1.01 0.00 38.10 3.59
302 303 0.174845 TGGCCCGACAGAAACTATCG 59.825 55.000 0.00 0.00 35.62 2.92
303 304 1.473434 CCTGGCCCGACAGAAACTATC 60.473 57.143 0.00 0.00 40.97 2.08
304 305 0.541863 CCTGGCCCGACAGAAACTAT 59.458 55.000 0.00 0.00 40.97 2.12
305 306 1.980052 CCTGGCCCGACAGAAACTA 59.020 57.895 0.00 0.00 40.97 2.24
306 307 2.750350 CCTGGCCCGACAGAAACT 59.250 61.111 0.00 0.00 40.97 2.66
307 308 3.056328 GCCTGGCCCGACAGAAAC 61.056 66.667 7.66 0.00 40.97 2.78
308 309 3.249189 AGCCTGGCCCGACAGAAA 61.249 61.111 16.57 0.00 40.97 2.52
309 310 4.020617 CAGCCTGGCCCGACAGAA 62.021 66.667 16.57 0.00 40.97 3.02
326 327 0.386478 CGAACTTCAAAGCAGCCTGC 60.386 55.000 9.13 9.13 45.46 4.85
327 328 0.947244 ACGAACTTCAAAGCAGCCTG 59.053 50.000 0.00 0.00 0.00 4.85
328 329 0.947244 CACGAACTTCAAAGCAGCCT 59.053 50.000 0.00 0.00 0.00 4.58
329 330 0.661483 GCACGAACTTCAAAGCAGCC 60.661 55.000 0.00 0.00 0.00 4.85
330 331 0.993746 CGCACGAACTTCAAAGCAGC 60.994 55.000 0.00 0.00 0.00 5.25
331 332 0.384725 CCGCACGAACTTCAAAGCAG 60.385 55.000 0.00 0.00 0.00 4.24
332 333 1.646540 CCGCACGAACTTCAAAGCA 59.353 52.632 0.00 0.00 0.00 3.91
333 334 1.725973 GCCGCACGAACTTCAAAGC 60.726 57.895 0.00 0.00 0.00 3.51
334 335 1.082104 GGCCGCACGAACTTCAAAG 60.082 57.895 0.00 0.00 0.00 2.77
335 336 1.503818 GAGGCCGCACGAACTTCAAA 61.504 55.000 0.00 0.00 0.00 2.69
336 337 1.959226 GAGGCCGCACGAACTTCAA 60.959 57.895 0.00 0.00 0.00 2.69
337 338 2.357034 GAGGCCGCACGAACTTCA 60.357 61.111 0.00 0.00 0.00 3.02
338 339 1.503818 TTTGAGGCCGCACGAACTTC 61.504 55.000 9.41 0.00 0.00 3.01
339 340 1.525077 TTTGAGGCCGCACGAACTT 60.525 52.632 9.41 0.00 0.00 2.66
340 341 2.110213 TTTGAGGCCGCACGAACT 59.890 55.556 9.41 0.00 0.00 3.01
341 342 2.251371 GTTTGAGGCCGCACGAAC 59.749 61.111 9.41 8.61 0.00 3.95
342 343 2.975799 GGTTTGAGGCCGCACGAA 60.976 61.111 9.41 0.00 0.00 3.85
349 350 3.346631 CTGCATGCGGTTTGAGGCC 62.347 63.158 18.84 0.00 0.00 5.19
350 351 2.180017 CTGCATGCGGTTTGAGGC 59.820 61.111 18.84 0.00 0.00 4.70
351 352 2.180017 GCTGCATGCGGTTTGAGG 59.820 61.111 26.79 4.24 0.00 3.86
352 353 2.180017 GGCTGCATGCGGTTTGAG 59.820 61.111 26.79 11.97 44.05 3.02
353 354 3.372730 GGGCTGCATGCGGTTTGA 61.373 61.111 26.79 0.20 44.05 2.69
354 355 3.636313 CTGGGCTGCATGCGGTTTG 62.636 63.158 26.79 11.60 44.05 2.93
355 356 3.376078 CTGGGCTGCATGCGGTTT 61.376 61.111 26.79 0.00 44.05 3.27
360 361 4.446413 GTTGGCTGGGCTGCATGC 62.446 66.667 11.82 11.82 41.94 4.06
361 362 3.766691 GGTTGGCTGGGCTGCATG 61.767 66.667 0.50 0.00 34.04 4.06
362 363 3.831727 TTGGTTGGCTGGGCTGCAT 62.832 57.895 0.50 0.00 34.04 3.96
363 364 3.909802 TATTTGGTTGGCTGGGCTGCA 62.910 52.381 0.50 0.00 34.04 4.41
364 365 1.257055 TATTTGGTTGGCTGGGCTGC 61.257 55.000 0.00 0.00 0.00 5.25
365 366 0.819582 CTATTTGGTTGGCTGGGCTG 59.180 55.000 0.00 0.00 0.00 4.85
366 367 0.704076 TCTATTTGGTTGGCTGGGCT 59.296 50.000 0.00 0.00 0.00 5.19
367 368 0.817654 GTCTATTTGGTTGGCTGGGC 59.182 55.000 0.00 0.00 0.00 5.36
368 369 1.272425 TGGTCTATTTGGTTGGCTGGG 60.272 52.381 0.00 0.00 0.00 4.45
369 370 2.214376 TGGTCTATTTGGTTGGCTGG 57.786 50.000 0.00 0.00 0.00 4.85
370 371 2.159198 GCATGGTCTATTTGGTTGGCTG 60.159 50.000 0.00 0.00 0.00 4.85
371 372 2.102578 GCATGGTCTATTTGGTTGGCT 58.897 47.619 0.00 0.00 0.00 4.75
372 373 1.824230 TGCATGGTCTATTTGGTTGGC 59.176 47.619 0.00 0.00 0.00 4.52
373 374 2.824936 TGTGCATGGTCTATTTGGTTGG 59.175 45.455 0.00 0.00 0.00 3.77
374 375 4.400251 AGATGTGCATGGTCTATTTGGTTG 59.600 41.667 0.00 0.00 0.00 3.77
375 376 4.603131 AGATGTGCATGGTCTATTTGGTT 58.397 39.130 0.00 0.00 0.00 3.67
376 377 4.202441 GAGATGTGCATGGTCTATTTGGT 58.798 43.478 0.00 0.00 0.00 3.67
377 378 3.249320 CGAGATGTGCATGGTCTATTTGG 59.751 47.826 0.00 0.00 0.00 3.28
378 379 3.303593 GCGAGATGTGCATGGTCTATTTG 60.304 47.826 0.00 0.00 0.00 2.32
379 380 2.874701 GCGAGATGTGCATGGTCTATTT 59.125 45.455 0.00 0.00 0.00 1.40
380 381 2.487934 GCGAGATGTGCATGGTCTATT 58.512 47.619 0.00 0.00 0.00 1.73
381 382 1.603931 CGCGAGATGTGCATGGTCTAT 60.604 52.381 0.00 0.00 0.00 1.98
382 383 0.249031 CGCGAGATGTGCATGGTCTA 60.249 55.000 0.00 0.00 0.00 2.59
383 384 1.520120 CGCGAGATGTGCATGGTCT 60.520 57.895 0.00 0.00 0.00 3.85
384 385 3.009140 CGCGAGATGTGCATGGTC 58.991 61.111 0.00 0.00 0.00 4.02
406 407 2.475466 CGCATGCAGCCTAACCAGG 61.475 63.158 19.57 0.00 45.77 4.45
407 408 2.475466 CCGCATGCAGCCTAACCAG 61.475 63.158 19.57 0.00 41.38 4.00
408 409 2.438254 CCGCATGCAGCCTAACCA 60.438 61.111 19.57 0.00 41.38 3.67
409 410 2.124736 TCCGCATGCAGCCTAACC 60.125 61.111 19.57 0.00 41.38 2.85
410 411 0.179084 TAGTCCGCATGCAGCCTAAC 60.179 55.000 19.57 5.81 41.38 2.34
411 412 0.179084 GTAGTCCGCATGCAGCCTAA 60.179 55.000 19.57 0.00 41.38 2.69
412 413 1.441729 GTAGTCCGCATGCAGCCTA 59.558 57.895 19.57 10.52 41.38 3.93
413 414 2.187946 GTAGTCCGCATGCAGCCT 59.812 61.111 19.57 11.54 41.38 4.58
414 415 2.897350 GGTAGTCCGCATGCAGCC 60.897 66.667 19.57 3.82 41.38 4.85
415 416 1.305219 TTTGGTAGTCCGCATGCAGC 61.305 55.000 19.57 7.88 40.87 5.25
416 417 0.447801 GTTTGGTAGTCCGCATGCAG 59.552 55.000 19.57 6.53 36.30 4.41
417 418 0.250510 TGTTTGGTAGTCCGCATGCA 60.251 50.000 19.57 0.00 36.30 3.96
418 419 0.168128 GTGTTTGGTAGTCCGCATGC 59.832 55.000 7.91 7.91 36.30 4.06
419 420 0.442310 CGTGTTTGGTAGTCCGCATG 59.558 55.000 0.00 0.00 36.30 4.06
420 421 0.034337 ACGTGTTTGGTAGTCCGCAT 59.966 50.000 0.00 0.00 36.30 4.73
421 422 0.598158 GACGTGTTTGGTAGTCCGCA 60.598 55.000 0.00 0.00 36.30 5.69
422 423 1.287041 GGACGTGTTTGGTAGTCCGC 61.287 60.000 0.00 0.00 42.88 5.54
423 424 2.818350 GGACGTGTTTGGTAGTCCG 58.182 57.895 0.00 0.00 42.88 4.79
425 426 3.985925 CACTTAGGACGTGTTTGGTAGTC 59.014 47.826 0.00 0.00 0.00 2.59
426 427 3.801293 GCACTTAGGACGTGTTTGGTAGT 60.801 47.826 0.00 0.00 34.91 2.73
427 428 2.735134 GCACTTAGGACGTGTTTGGTAG 59.265 50.000 0.00 0.00 34.91 3.18
428 429 2.102757 TGCACTTAGGACGTGTTTGGTA 59.897 45.455 0.00 0.00 34.91 3.25
429 430 1.134340 TGCACTTAGGACGTGTTTGGT 60.134 47.619 0.00 0.00 34.91 3.67
430 431 1.263217 GTGCACTTAGGACGTGTTTGG 59.737 52.381 10.32 0.00 34.91 3.28
431 432 1.263217 GGTGCACTTAGGACGTGTTTG 59.737 52.381 17.98 0.00 39.86 2.93
432 433 1.589803 GGTGCACTTAGGACGTGTTT 58.410 50.000 17.98 0.00 39.86 2.83
433 434 0.250166 GGGTGCACTTAGGACGTGTT 60.250 55.000 17.98 0.00 39.86 3.32
434 435 1.370064 GGGTGCACTTAGGACGTGT 59.630 57.895 17.98 0.00 39.86 4.49
435 436 1.736645 CGGGTGCACTTAGGACGTG 60.737 63.158 17.98 0.00 39.86 4.49
436 437 2.654877 CGGGTGCACTTAGGACGT 59.345 61.111 17.98 0.00 39.86 4.34
437 438 2.813908 GCGGGTGCACTTAGGACG 60.814 66.667 17.98 12.47 39.86 4.79
438 439 2.436115 GGCGGGTGCACTTAGGAC 60.436 66.667 17.98 1.80 45.35 3.85
439 440 1.774894 AAAGGCGGGTGCACTTAGGA 61.775 55.000 17.98 0.00 45.35 2.94
440 441 1.303317 AAAGGCGGGTGCACTTAGG 60.303 57.895 17.98 4.77 45.35 2.69
441 442 1.305930 GGAAAGGCGGGTGCACTTAG 61.306 60.000 17.98 9.44 45.35 2.18
442 443 1.302993 GGAAAGGCGGGTGCACTTA 60.303 57.895 17.98 0.00 45.35 2.24
443 444 2.597510 GGAAAGGCGGGTGCACTT 60.598 61.111 17.98 0.97 45.35 3.16
461 462 4.569564 CACGGTCTGCCTTACTATTTTACC 59.430 45.833 0.00 0.00 0.00 2.85
477 478 3.748083 TGTTAGTCTACTCACACGGTCT 58.252 45.455 0.00 0.00 0.00 3.85
489 490 4.628333 GCCGCATACTTTGTTGTTAGTCTA 59.372 41.667 0.00 0.00 0.00 2.59
563 564 3.549794 GGGAGGAAATGATGGAAGACAG 58.450 50.000 0.00 0.00 0.00 3.51
657 665 3.612247 TTGAAGCTCCTGCCGCTCC 62.612 63.158 0.00 0.00 40.80 4.70
690 698 2.631062 ACGGACAAAGGAGTGTACATGA 59.369 45.455 0.00 0.00 31.13 3.07
709 717 5.696724 AGTGTCCATACTTTCTTTCTTGACG 59.303 40.000 0.00 0.00 0.00 4.35
759 767 8.214721 AGTTCGAAAAAGAAGAGACTGAAAAT 57.785 30.769 0.00 0.00 0.00 1.82
809 823 9.388506 ACTTTGATTAGATTGGTTGATCTACAG 57.611 33.333 9.51 0.00 38.12 2.74
818 832 4.156008 GCGACCACTTTGATTAGATTGGTT 59.844 41.667 0.00 0.00 37.48 3.67
819 833 3.689649 GCGACCACTTTGATTAGATTGGT 59.310 43.478 0.00 0.00 40.10 3.67
822 836 4.142600 GCAAGCGACCACTTTGATTAGATT 60.143 41.667 0.00 0.00 0.00 2.40
872 886 0.806102 TAGCGACGATTCTGGCAAGC 60.806 55.000 0.00 0.00 0.00 4.01
903 917 1.321474 TGGAGGCTGCAAGTTTCAAG 58.679 50.000 6.12 0.00 35.30 3.02
1197 1222 0.741221 CGAAGCAGAAGGGCCTGTAC 60.741 60.000 6.92 1.62 36.57 2.90
1423 1448 2.012414 CGAACTGCGACGTTTCCGA 61.012 57.895 0.00 0.00 44.57 4.55
1424 1449 2.464189 CGAACTGCGACGTTTCCG 59.536 61.111 0.00 0.00 44.57 4.30
1565 1590 0.031585 CTCCTCAAACACCACGTCGA 59.968 55.000 0.00 0.00 0.00 4.20
1757 1782 3.390521 TGTTCCGCATCGCCTCCT 61.391 61.111 0.00 0.00 0.00 3.69
1958 1984 3.976793 ATTTCTTATAGCGTCGACCGA 57.023 42.857 10.58 0.00 39.56 4.69
1981 2007 5.346822 GTCAATATCTGCAAAAGCAAACCAG 59.653 40.000 0.00 0.00 0.00 4.00
2068 2100 2.359850 GCGCACCTGAATCCACCA 60.360 61.111 0.30 0.00 0.00 4.17
2071 2103 2.334946 GCAAGCGCACCTGAATCCA 61.335 57.895 11.47 0.00 38.36 3.41
2218 2254 5.505819 CGTCTGCAGATTCCGAGAAATACTA 60.506 44.000 21.47 0.00 0.00 1.82
2247 2286 3.589951 ATTCAGGGAGCATGCATTAGT 57.410 42.857 21.98 0.00 0.00 2.24
2298 2337 0.953960 CGCGTCCCTAATATTGGGCC 60.954 60.000 12.26 0.00 44.23 5.80
2461 2501 1.275657 CGCGTGAAAAGTTCAGCGT 59.724 52.632 18.30 0.00 44.47 5.07
3371 4426 7.722795 AAAAATTTTACAGCGCCAAAATAGT 57.277 28.000 19.27 11.41 34.17 2.12
3400 4455 2.645567 GCTCTATCTAGCCGCGCA 59.354 61.111 8.75 0.00 36.45 6.09
3413 4468 0.108424 GCATCTCCAACAGACGCTCT 60.108 55.000 0.00 0.00 37.36 4.09
3415 4470 1.978473 AGCATCTCCAACAGACGCT 59.022 52.632 0.00 0.00 46.07 5.07
3439 4494 9.740710 AAGGTGTGCTAGAAATTAAGTAAGATT 57.259 29.630 0.00 0.00 0.00 2.40
3440 4495 9.740710 AAAGGTGTGCTAGAAATTAAGTAAGAT 57.259 29.630 0.00 0.00 0.00 2.40
3441 4496 9.569122 AAAAGGTGTGCTAGAAATTAAGTAAGA 57.431 29.630 0.00 0.00 0.00 2.10
3750 4805 2.791256 CACCGCTTTATGGCCACG 59.209 61.111 8.16 6.66 0.00 4.94
3886 4947 2.805546 TCGTAGACGAGCATGGGC 59.194 61.111 0.00 0.00 44.22 5.36
4004 5083 2.052690 AGGAGTGCAGGTACGCGAT 61.053 57.895 15.93 0.00 33.35 4.58
4648 5735 3.526931 AGATGTGACGACCGATTGAAT 57.473 42.857 0.00 0.00 0.00 2.57
4665 5752 6.212388 CCACCTGCCTCTTATATAGACAAGAT 59.788 42.308 0.00 0.00 30.70 2.40
4791 5878 0.833834 CTAGGCCGGATCATCCAGGT 60.834 60.000 5.05 0.00 35.91 4.00
4794 5881 2.217038 GGCTAGGCCGGATCATCCA 61.217 63.158 5.05 0.00 39.62 3.41
4842 5929 5.553123 GAGGTCGTATGAGGATTCTAGAGA 58.447 45.833 0.00 0.00 0.00 3.10
4917 6007 6.873076 AGATCAAAAAGTGTTCAACAGCAAAA 59.127 30.769 0.00 0.00 0.00 2.44
4921 6011 5.581605 TCAGATCAAAAAGTGTTCAACAGC 58.418 37.500 0.00 0.00 0.00 4.40
4957 6047 2.640316 AGAAAACAGCCCGAAACTCT 57.360 45.000 0.00 0.00 0.00 3.24
5050 6144 1.210478 CCGGATGATCTGGGTCAACTT 59.790 52.381 12.62 0.00 39.28 2.66
5072 6166 0.108585 TCCAGAAGGTTGGTGCTGAC 59.891 55.000 0.00 0.00 39.35 3.51
5154 6251 2.050168 CAAAACCGTGCGCTGCAT 60.050 55.556 9.73 0.00 41.91 3.96
5206 6304 8.888579 AAACGGACGATTCTGATATAAAGATT 57.111 30.769 0.00 0.00 31.76 2.40
5232 6330 2.124903 GCAAAGTTCTTCGTCTCGTCA 58.875 47.619 0.00 0.00 0.00 4.35
5292 6390 5.294306 TGTTCAGAACAATATTCGGCTGATC 59.706 40.000 13.90 9.87 38.72 2.92
5305 6403 8.902806 AGTATTGAGATTTTGTGTTCAGAACAA 58.097 29.630 17.83 2.62 44.16 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.