Multiple sequence alignment - TraesCS6B01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G255400 chr6B 100.000 2390 0 0 1 2390 459382389 459384778 0.000000e+00 4414.0
1 TraesCS6B01G255400 chr6B 79.625 373 51 13 1094 1461 459229007 459229359 6.600000e-61 244.0
2 TraesCS6B01G255400 chr6B 88.947 190 20 1 1135 1324 459265386 459265574 1.430000e-57 233.0
3 TraesCS6B01G255400 chr6D 94.370 1705 65 15 211 1892 295143142 295144838 0.000000e+00 2588.0
4 TraesCS6B01G255400 chr6D 81.452 372 50 9 1095 1461 295068561 295068918 1.080000e-73 287.0
5 TraesCS6B01G255400 chr6D 78.820 373 54 12 1094 1461 295110334 295110686 6.650000e-56 228.0
6 TraesCS6B01G255400 chr6D 94.048 84 3 2 2305 2386 295144931 295145014 2.490000e-25 126.0
7 TraesCS6B01G255400 chr6D 97.368 38 1 0 1 38 111562634 111562597 5.510000e-07 65.8
8 TraesCS6B01G255400 chr6A 91.928 1338 47 20 583 1884 425862430 425861118 0.000000e+00 1816.0
9 TraesCS6B01G255400 chr6A 87.616 323 33 3 211 526 425863290 425862968 3.750000e-98 368.0
10 TraesCS6B01G255400 chr6A 91.566 83 4 2 2305 2386 425861016 425860936 6.980000e-21 111.0
11 TraesCS6B01G255400 chr2A 89.456 294 30 1 2017 2309 206447789 206447496 1.040000e-98 370.0
12 TraesCS6B01G255400 chr2B 89.286 280 29 1 2031 2309 248698516 248698237 1.360000e-92 350.0
13 TraesCS6B01G255400 chr2B 86.592 179 21 1 32 210 794155302 794155127 6.740000e-46 195.0
14 TraesCS6B01G255400 chr2B 85.430 151 17 3 53 203 199463688 199463833 4.110000e-33 152.0
15 TraesCS6B01G255400 chr1B 86.408 309 25 4 2013 2307 48143339 48143644 2.960000e-84 322.0
16 TraesCS6B01G255400 chr1D 87.931 174 18 1 31 204 458114049 458114219 4.030000e-48 202.0
17 TraesCS6B01G255400 chr1D 81.633 147 19 7 365 508 409995938 409996079 5.400000e-22 115.0
18 TraesCS6B01G255400 chr3D 89.404 151 13 1 32 182 545791606 545791459 1.130000e-43 187.0
19 TraesCS6B01G255400 chr3D 88.742 151 14 1 32 182 26308228 26308081 5.250000e-42 182.0
20 TraesCS6B01G255400 chr3D 83.815 173 24 3 38 210 556628856 556629024 6.840000e-36 161.0
21 TraesCS6B01G255400 chr4D 84.483 174 24 1 31 204 309497206 309497376 4.090000e-38 169.0
22 TraesCS6B01G255400 chr4D 82.517 143 17 6 370 508 25461331 25461193 4.170000e-23 119.0
23 TraesCS6B01G255400 chr7A 85.526 152 15 5 53 203 700096144 700095999 4.110000e-33 152.0
24 TraesCS6B01G255400 chr4A 82.184 174 28 2 31 204 708462535 708462705 1.910000e-31 147.0
25 TraesCS6B01G255400 chr5D 83.916 143 16 6 370 508 340742333 340742472 1.930000e-26 130.0
26 TraesCS6B01G255400 chr5B 83.942 137 17 5 375 508 540361280 540361146 2.490000e-25 126.0
27 TraesCS6B01G255400 chr5B 82.394 142 20 5 370 508 107208381 107208242 4.170000e-23 119.0
28 TraesCS6B01G255400 chr4B 85.470 117 17 0 32 148 497483490 497483606 3.230000e-24 122.0
29 TraesCS6B01G255400 chr2D 83.099 142 17 6 370 508 74135828 74135691 3.230000e-24 122.0
30 TraesCS6B01G255400 chr7D 80.128 156 25 4 357 508 89889723 89889876 6.980000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G255400 chr6B 459382389 459384778 2389 False 4414 4414 100.000 1 2390 1 chr6B.!!$F3 2389
1 TraesCS6B01G255400 chr6D 295143142 295145014 1872 False 1357 2588 94.209 211 2386 2 chr6D.!!$F3 2175
2 TraesCS6B01G255400 chr6A 425860936 425863290 2354 True 765 1816 90.370 211 2386 3 chr6A.!!$R1 2175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.035056 AAGTTCGCCATCCTGGGAAG 60.035 55.0 0.0 0.0 38.19 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2501 0.032017 GCCCCTCTCTCTTCCTACCA 60.032 60.0 0.0 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.695314 GCTAAGTTCGCCATCCTGG 58.305 57.895 0.00 0.00 41.55 4.45
19 20 0.815615 GCTAAGTTCGCCATCCTGGG 60.816 60.000 0.00 0.00 38.19 4.45
20 21 0.830648 CTAAGTTCGCCATCCTGGGA 59.169 55.000 0.00 0.00 38.19 4.37
21 22 1.209504 CTAAGTTCGCCATCCTGGGAA 59.790 52.381 0.00 0.00 38.19 3.97
22 23 0.035056 AAGTTCGCCATCCTGGGAAG 60.035 55.000 0.00 0.00 38.19 3.46
23 24 1.201429 AGTTCGCCATCCTGGGAAGT 61.201 55.000 0.00 0.00 38.19 3.01
24 25 0.539986 GTTCGCCATCCTGGGAAGTA 59.460 55.000 0.00 0.00 38.19 2.24
25 26 0.830648 TTCGCCATCCTGGGAAGTAG 59.169 55.000 0.00 0.00 38.19 2.57
26 27 1.227674 CGCCATCCTGGGAAGTAGC 60.228 63.158 0.00 0.00 38.19 3.58
27 28 1.149401 GCCATCCTGGGAAGTAGCC 59.851 63.158 0.00 0.00 38.19 3.93
36 37 2.414994 GGGAAGTAGCCCTAACCAAC 57.585 55.000 0.00 0.00 45.12 3.77
37 38 1.631898 GGGAAGTAGCCCTAACCAACA 59.368 52.381 0.00 0.00 45.12 3.33
38 39 2.241430 GGGAAGTAGCCCTAACCAACAT 59.759 50.000 0.00 0.00 45.12 2.71
39 40 3.542648 GGAAGTAGCCCTAACCAACATC 58.457 50.000 0.00 0.00 0.00 3.06
40 41 3.200165 GGAAGTAGCCCTAACCAACATCT 59.800 47.826 0.00 0.00 0.00 2.90
41 42 4.324331 GGAAGTAGCCCTAACCAACATCTT 60.324 45.833 0.00 0.00 0.00 2.40
42 43 4.489306 AGTAGCCCTAACCAACATCTTC 57.511 45.455 0.00 0.00 0.00 2.87
43 44 3.844211 AGTAGCCCTAACCAACATCTTCA 59.156 43.478 0.00 0.00 0.00 3.02
44 45 3.356529 AGCCCTAACCAACATCTTCAG 57.643 47.619 0.00 0.00 0.00 3.02
45 46 2.912956 AGCCCTAACCAACATCTTCAGA 59.087 45.455 0.00 0.00 0.00 3.27
46 47 3.525199 AGCCCTAACCAACATCTTCAGAT 59.475 43.478 0.00 0.00 34.56 2.90
47 48 3.879892 GCCCTAACCAACATCTTCAGATC 59.120 47.826 0.00 0.00 31.21 2.75
48 49 4.455606 CCCTAACCAACATCTTCAGATCC 58.544 47.826 0.00 0.00 31.21 3.36
49 50 4.080356 CCCTAACCAACATCTTCAGATCCA 60.080 45.833 0.00 0.00 31.21 3.41
50 51 5.121811 CCTAACCAACATCTTCAGATCCAG 58.878 45.833 0.00 0.00 31.21 3.86
51 52 4.916041 AACCAACATCTTCAGATCCAGA 57.084 40.909 0.00 0.00 31.21 3.86
52 53 4.916041 ACCAACATCTTCAGATCCAGAA 57.084 40.909 0.00 0.00 31.21 3.02
53 54 4.583871 ACCAACATCTTCAGATCCAGAAC 58.416 43.478 0.00 0.00 31.21 3.01
54 55 3.944015 CCAACATCTTCAGATCCAGAACC 59.056 47.826 0.00 0.00 31.21 3.62
55 56 4.566278 CCAACATCTTCAGATCCAGAACCA 60.566 45.833 0.00 0.00 31.21 3.67
56 57 4.916041 ACATCTTCAGATCCAGAACCAA 57.084 40.909 0.00 0.00 31.21 3.67
57 58 4.841422 ACATCTTCAGATCCAGAACCAAG 58.159 43.478 0.00 0.00 31.21 3.61
58 59 3.988976 TCTTCAGATCCAGAACCAAGG 57.011 47.619 0.00 0.00 0.00 3.61
59 60 3.520696 TCTTCAGATCCAGAACCAAGGA 58.479 45.455 0.00 0.00 38.50 3.36
60 61 3.261897 TCTTCAGATCCAGAACCAAGGAC 59.738 47.826 0.00 0.00 36.60 3.85
61 62 1.550524 TCAGATCCAGAACCAAGGACG 59.449 52.381 0.00 0.00 36.60 4.79
62 63 0.250513 AGATCCAGAACCAAGGACGC 59.749 55.000 0.00 0.00 36.60 5.19
63 64 0.250513 GATCCAGAACCAAGGACGCT 59.749 55.000 0.00 0.00 36.60 5.07
64 65 1.480954 GATCCAGAACCAAGGACGCTA 59.519 52.381 0.00 0.00 36.60 4.26
65 66 0.606604 TCCAGAACCAAGGACGCTAC 59.393 55.000 0.00 0.00 0.00 3.58
66 67 0.736325 CCAGAACCAAGGACGCTACG 60.736 60.000 0.00 0.00 0.00 3.51
67 68 0.242825 CAGAACCAAGGACGCTACGA 59.757 55.000 0.00 0.00 0.00 3.43
68 69 0.526662 AGAACCAAGGACGCTACGAG 59.473 55.000 0.00 0.00 0.00 4.18
69 70 1.077089 GAACCAAGGACGCTACGAGC 61.077 60.000 0.00 0.00 38.02 5.03
70 71 1.812686 AACCAAGGACGCTACGAGCA 61.813 55.000 7.47 0.00 42.58 4.26
71 72 1.080093 CCAAGGACGCTACGAGCAA 60.080 57.895 7.47 0.00 42.58 3.91
72 73 1.352156 CCAAGGACGCTACGAGCAAC 61.352 60.000 7.47 1.43 42.58 4.17
73 74 0.388649 CAAGGACGCTACGAGCAACT 60.389 55.000 7.47 0.35 42.58 3.16
74 75 1.135489 CAAGGACGCTACGAGCAACTA 60.135 52.381 7.47 0.00 42.58 2.24
75 76 1.171308 AGGACGCTACGAGCAACTAA 58.829 50.000 7.47 0.00 42.58 2.24
76 77 1.132643 AGGACGCTACGAGCAACTAAG 59.867 52.381 7.47 0.00 42.58 2.18
77 78 1.131883 GGACGCTACGAGCAACTAAGA 59.868 52.381 7.47 0.00 42.58 2.10
78 79 2.175566 GACGCTACGAGCAACTAAGAC 58.824 52.381 7.47 0.00 42.58 3.01
79 80 1.538512 ACGCTACGAGCAACTAAGACA 59.461 47.619 7.47 0.00 42.58 3.41
80 81 2.177977 CGCTACGAGCAACTAAGACAG 58.822 52.381 7.47 0.00 42.58 3.51
81 82 1.921230 GCTACGAGCAACTAAGACAGC 59.079 52.381 0.00 0.00 41.89 4.40
82 83 2.177977 CTACGAGCAACTAAGACAGCG 58.822 52.381 0.00 0.00 0.00 5.18
83 84 1.009389 ACGAGCAACTAAGACAGCGC 61.009 55.000 0.00 0.00 0.00 5.92
84 85 1.687494 CGAGCAACTAAGACAGCGCC 61.687 60.000 2.29 0.00 0.00 6.53
85 86 0.390472 GAGCAACTAAGACAGCGCCT 60.390 55.000 2.29 0.00 0.00 5.52
86 87 0.035458 AGCAACTAAGACAGCGCCTT 59.965 50.000 2.29 2.70 0.00 4.35
87 88 0.444260 GCAACTAAGACAGCGCCTTC 59.556 55.000 2.29 0.00 0.00 3.46
88 89 1.795768 CAACTAAGACAGCGCCTTCA 58.204 50.000 2.29 0.00 0.00 3.02
89 90 1.461127 CAACTAAGACAGCGCCTTCAC 59.539 52.381 2.29 0.00 0.00 3.18
90 91 0.388649 ACTAAGACAGCGCCTTCACG 60.389 55.000 2.29 0.00 0.00 4.35
91 92 0.109272 CTAAGACAGCGCCTTCACGA 60.109 55.000 2.29 0.00 34.06 4.35
92 93 0.315886 TAAGACAGCGCCTTCACGAA 59.684 50.000 2.29 0.00 34.06 3.85
93 94 0.946221 AAGACAGCGCCTTCACGAAG 60.946 55.000 2.29 0.00 38.14 3.79
103 104 1.328439 CTTCACGAAGGAGAACGACG 58.672 55.000 0.00 0.00 34.87 5.12
104 105 0.662374 TTCACGAAGGAGAACGACGC 60.662 55.000 0.00 0.00 0.00 5.19
105 106 2.087009 CACGAAGGAGAACGACGCC 61.087 63.158 0.00 0.00 38.77 5.68
106 107 2.874780 CGAAGGAGAACGACGCCG 60.875 66.667 0.00 0.00 43.25 6.46
107 108 2.564975 GAAGGAGAACGACGCCGA 59.435 61.111 0.00 0.00 43.25 5.54
108 109 1.514443 GAAGGAGAACGACGCCGAG 60.514 63.158 0.00 0.00 43.25 4.63
109 110 1.919956 GAAGGAGAACGACGCCGAGA 61.920 60.000 0.00 0.00 43.25 4.04
110 111 2.197643 AAGGAGAACGACGCCGAGAC 62.198 60.000 0.00 0.00 43.25 3.36
111 112 2.573689 GAGAACGACGCCGAGACG 60.574 66.667 0.00 0.00 43.26 4.18
112 113 4.755614 AGAACGACGCCGAGACGC 62.756 66.667 0.00 0.00 41.46 5.19
132 133 2.518587 TCGCCGTCCGATCCAGAT 60.519 61.111 0.00 0.00 41.89 2.90
133 134 1.228033 TCGCCGTCCGATCCAGATA 60.228 57.895 0.00 0.00 41.89 1.98
134 135 0.820482 TCGCCGTCCGATCCAGATAA 60.820 55.000 0.00 0.00 41.89 1.75
135 136 0.663568 CGCCGTCCGATCCAGATAAC 60.664 60.000 0.00 0.00 40.02 1.89
136 137 0.319641 GCCGTCCGATCCAGATAACC 60.320 60.000 0.00 0.00 0.00 2.85
137 138 0.039437 CCGTCCGATCCAGATAACCG 60.039 60.000 0.00 0.00 0.00 4.44
138 139 0.039437 CGTCCGATCCAGATAACCGG 60.039 60.000 0.00 0.00 41.36 5.28
139 140 1.325355 GTCCGATCCAGATAACCGGA 58.675 55.000 9.46 5.19 45.74 5.14
140 141 1.325355 TCCGATCCAGATAACCGGAC 58.675 55.000 9.46 0.00 43.47 4.79
141 142 0.317479 CCGATCCAGATAACCGGACC 59.683 60.000 9.46 0.00 42.49 4.46
142 143 1.329256 CGATCCAGATAACCGGACCT 58.671 55.000 9.46 0.00 33.05 3.85
143 144 2.511659 CGATCCAGATAACCGGACCTA 58.488 52.381 9.46 0.00 33.05 3.08
144 145 2.889045 CGATCCAGATAACCGGACCTAA 59.111 50.000 9.46 0.00 33.05 2.69
145 146 3.057456 CGATCCAGATAACCGGACCTAAG 60.057 52.174 9.46 0.00 33.05 2.18
146 147 2.674420 TCCAGATAACCGGACCTAAGG 58.326 52.381 9.46 3.08 0.00 2.69
147 148 2.023695 TCCAGATAACCGGACCTAAGGT 60.024 50.000 9.46 0.00 43.68 3.50
152 153 2.380365 ACCGGACCTAAGGTTTCCC 58.620 57.895 9.46 0.00 37.49 3.97
153 154 1.203441 ACCGGACCTAAGGTTTCCCC 61.203 60.000 9.46 0.00 37.49 4.81
155 156 0.252197 CGGACCTAAGGTTTCCCCTG 59.748 60.000 0.00 0.00 45.47 4.45
156 157 1.665137 GGACCTAAGGTTTCCCCTGA 58.335 55.000 0.00 0.00 45.47 3.86
157 158 2.206223 GGACCTAAGGTTTCCCCTGAT 58.794 52.381 0.00 0.00 45.47 2.90
158 159 2.092375 GGACCTAAGGTTTCCCCTGATG 60.092 54.545 0.00 0.00 45.47 3.07
159 160 2.844348 GACCTAAGGTTTCCCCTGATGA 59.156 50.000 0.00 0.00 45.47 2.92
160 161 3.459969 GACCTAAGGTTTCCCCTGATGAT 59.540 47.826 0.00 0.00 45.47 2.45
161 162 3.203040 ACCTAAGGTTTCCCCTGATGATG 59.797 47.826 0.00 0.00 45.47 3.07
162 163 2.149973 AAGGTTTCCCCTGATGATGC 57.850 50.000 0.00 0.00 45.47 3.91
163 164 1.302907 AGGTTTCCCCTGATGATGCT 58.697 50.000 0.00 0.00 44.08 3.79
164 165 1.213926 AGGTTTCCCCTGATGATGCTC 59.786 52.381 0.00 0.00 44.08 4.26
165 166 1.303309 GTTTCCCCTGATGATGCTCG 58.697 55.000 0.00 0.00 0.00 5.03
166 167 0.911769 TTTCCCCTGATGATGCTCGT 59.088 50.000 0.00 0.00 0.00 4.18
167 168 1.788229 TTCCCCTGATGATGCTCGTA 58.212 50.000 0.00 0.00 0.00 3.43
168 169 1.332195 TCCCCTGATGATGCTCGTAG 58.668 55.000 0.00 0.00 0.00 3.51
169 170 1.133482 TCCCCTGATGATGCTCGTAGA 60.133 52.381 0.00 0.00 0.00 2.59
181 182 2.443168 TCGTAGAGGGGCACAAACA 58.557 52.632 0.00 0.00 0.00 2.83
182 183 0.981183 TCGTAGAGGGGCACAAACAT 59.019 50.000 0.00 0.00 0.00 2.71
183 184 1.066430 TCGTAGAGGGGCACAAACATC 60.066 52.381 0.00 0.00 0.00 3.06
184 185 1.369625 GTAGAGGGGCACAAACATCG 58.630 55.000 0.00 0.00 0.00 3.84
185 186 0.251916 TAGAGGGGCACAAACATCGG 59.748 55.000 0.00 0.00 0.00 4.18
186 187 1.303317 GAGGGGCACAAACATCGGT 60.303 57.895 0.00 0.00 0.00 4.69
187 188 1.303317 AGGGGCACAAACATCGGTC 60.303 57.895 0.00 0.00 0.00 4.79
188 189 2.686816 GGGGCACAAACATCGGTCG 61.687 63.158 0.00 0.00 0.00 4.79
189 190 1.964373 GGGCACAAACATCGGTCGT 60.964 57.895 0.00 0.00 0.00 4.34
190 191 1.206578 GGCACAAACATCGGTCGTG 59.793 57.895 0.00 0.00 0.00 4.35
191 192 1.225376 GGCACAAACATCGGTCGTGA 61.225 55.000 0.00 0.00 0.00 4.35
192 193 0.110823 GCACAAACATCGGTCGTGAC 60.111 55.000 0.00 0.00 0.00 3.67
193 194 1.213491 CACAAACATCGGTCGTGACA 58.787 50.000 2.00 0.00 0.00 3.58
194 195 1.595328 CACAAACATCGGTCGTGACAA 59.405 47.619 2.00 0.00 0.00 3.18
195 196 1.595794 ACAAACATCGGTCGTGACAAC 59.404 47.619 2.00 0.00 0.00 3.32
205 206 3.437845 CGTGACAACGCTTCCAAAG 57.562 52.632 0.00 0.00 43.98 2.77
206 207 0.934496 CGTGACAACGCTTCCAAAGA 59.066 50.000 0.00 0.00 43.98 2.52
207 208 1.070577 CGTGACAACGCTTCCAAAGAG 60.071 52.381 0.00 0.00 43.98 2.85
208 209 1.264288 GTGACAACGCTTCCAAAGAGG 59.736 52.381 0.00 0.00 39.47 3.69
209 210 0.875059 GACAACGCTTCCAAAGAGGG 59.125 55.000 0.00 0.00 38.24 4.30
213 214 1.280457 ACGCTTCCAAAGAGGGATCT 58.720 50.000 0.00 0.00 36.67 2.75
303 308 6.643360 TCAAACGCTTATACATACGCACATAT 59.357 34.615 0.00 0.00 0.00 1.78
426 431 6.799925 TCGCCGAAAAAGACTGAAATAAATTC 59.200 34.615 0.00 0.00 38.60 2.17
526 534 1.407979 CCCGTGTTCGCTAGGAGTTAT 59.592 52.381 0.00 0.00 35.54 1.89
555 687 7.435068 TTTTAAGCTTGCTAGGAGTTACTTG 57.565 36.000 9.86 0.00 0.00 3.16
591 1082 9.614792 AAAGAGTAAATAAGATGATGTGTACCC 57.385 33.333 0.00 0.00 0.00 3.69
602 1093 0.178938 TGTGTACCCAAGACCCGGTA 60.179 55.000 0.00 0.00 33.36 4.02
633 1124 2.933573 ACTGATACGGAAGATCGAGGT 58.066 47.619 0.00 0.00 0.00 3.85
801 1292 0.723459 GTAAACCAAAAGCGCGTCCG 60.723 55.000 8.43 0.00 37.57 4.79
860 1351 5.579718 CCTGGCCGACTACTATATAAATCG 58.420 45.833 0.00 0.00 0.00 3.34
905 1397 1.356398 ACCGGAAGAGAAGAGAGGAGT 59.644 52.381 9.46 0.00 0.00 3.85
943 1435 0.824182 ATCCCGGAGTCGAGTCATCC 60.824 60.000 21.38 8.92 39.00 3.51
1354 1850 4.480115 TCACTTCAGTCTTCCTCACCTTA 58.520 43.478 0.00 0.00 0.00 2.69
1373 1869 2.438434 CGGGTGCTTTAGGCCCTG 60.438 66.667 0.00 0.00 40.22 4.45
1432 1929 1.009900 CCGGTTTGCGCGTGTTTTA 60.010 52.632 8.43 0.00 0.00 1.52
1463 1960 2.890311 TGGTGTGGTGATCAAATTGGTC 59.110 45.455 0.00 0.00 0.00 4.02
1478 1990 1.378514 GGTCGGCATCCAACACCAT 60.379 57.895 0.00 0.00 0.00 3.55
1570 2082 5.121142 CGGAGTAAAATTTTGTAGCCTCGAA 59.879 40.000 13.76 0.00 0.00 3.71
1571 2083 6.347888 CGGAGTAAAATTTTGTAGCCTCGAAA 60.348 38.462 13.76 0.00 0.00 3.46
1645 2157 5.185454 TCCATGTTGTTGCTTAAGATCGAT 58.815 37.500 6.67 0.00 0.00 3.59
1719 2237 3.136077 CAGACACCCATGATCCAGAGAAT 59.864 47.826 0.00 0.00 0.00 2.40
1751 2282 5.958955 AGCTGATCTAATTGCCAGTTTTTC 58.041 37.500 0.00 0.00 0.00 2.29
1787 2318 4.832823 TGGAGTCAAATCTCGCCAGATATA 59.167 41.667 0.00 0.00 38.55 0.86
1800 2331 3.243907 GCCAGATATAACTCGGTCAAGCT 60.244 47.826 0.00 0.00 0.00 3.74
1822 2353 6.879458 AGCTTATTATCCGTCTGAAACTGTTT 59.121 34.615 5.29 5.29 0.00 2.83
1832 2363 7.012894 TCCGTCTGAAACTGTTTTATGTGAAAT 59.987 33.333 7.28 0.00 0.00 2.17
1898 2459 8.106462 TGGAATACTTGTGGTTCTATCAATTGA 58.894 33.333 11.26 11.26 0.00 2.57
1903 2464 3.332187 TGTGGTTCTATCAATTGACCCCA 59.668 43.478 11.07 9.44 0.00 4.96
1907 2468 5.421693 TGGTTCTATCAATTGACCCCAAATG 59.578 40.000 11.07 0.00 35.67 2.32
1911 2472 4.847990 ATCAATTGACCCCAAATGCAAT 57.152 36.364 11.07 0.00 34.13 3.56
1912 2473 3.940319 TCAATTGACCCCAAATGCAATG 58.060 40.909 3.38 0.00 34.13 2.82
1913 2474 3.011119 CAATTGACCCCAAATGCAATGG 58.989 45.455 13.57 13.57 35.67 3.16
1920 2481 2.018542 CCAAATGCAATGGGAAGCTG 57.981 50.000 12.86 0.00 34.15 4.24
1921 2482 1.365699 CAAATGCAATGGGAAGCTGC 58.634 50.000 0.00 0.00 36.60 5.25
1922 2483 1.066430 CAAATGCAATGGGAAGCTGCT 60.066 47.619 0.00 0.00 37.00 4.24
1923 2484 0.535335 AATGCAATGGGAAGCTGCTG 59.465 50.000 1.35 0.00 37.00 4.41
1924 2485 0.323999 ATGCAATGGGAAGCTGCTGA 60.324 50.000 1.35 0.00 37.00 4.26
1925 2486 0.963856 TGCAATGGGAAGCTGCTGAG 60.964 55.000 1.35 0.00 37.00 3.35
1926 2487 0.679002 GCAATGGGAAGCTGCTGAGA 60.679 55.000 1.35 0.00 33.20 3.27
1927 2488 1.830279 CAATGGGAAGCTGCTGAGAA 58.170 50.000 1.35 0.00 0.00 2.87
1928 2489 1.743958 CAATGGGAAGCTGCTGAGAAG 59.256 52.381 1.35 0.00 0.00 2.85
1929 2490 1.283347 ATGGGAAGCTGCTGAGAAGA 58.717 50.000 1.35 0.00 0.00 2.87
1930 2491 1.283347 TGGGAAGCTGCTGAGAAGAT 58.717 50.000 1.35 0.00 0.00 2.40
1931 2492 1.209019 TGGGAAGCTGCTGAGAAGATC 59.791 52.381 1.35 0.00 0.00 2.75
1932 2493 1.209019 GGGAAGCTGCTGAGAAGATCA 59.791 52.381 1.35 0.00 36.21 2.92
1933 2494 2.355513 GGGAAGCTGCTGAGAAGATCAA 60.356 50.000 1.35 0.00 37.52 2.57
1934 2495 3.341823 GGAAGCTGCTGAGAAGATCAAA 58.658 45.455 1.35 0.00 37.52 2.69
1935 2496 3.755378 GGAAGCTGCTGAGAAGATCAAAA 59.245 43.478 1.35 0.00 37.52 2.44
1936 2497 4.379290 GGAAGCTGCTGAGAAGATCAAAAC 60.379 45.833 1.35 0.00 37.52 2.43
1937 2498 4.018484 AGCTGCTGAGAAGATCAAAACT 57.982 40.909 0.00 0.00 37.52 2.66
1938 2499 3.752222 AGCTGCTGAGAAGATCAAAACTG 59.248 43.478 0.00 0.00 37.52 3.16
1939 2500 3.750130 GCTGCTGAGAAGATCAAAACTGA 59.250 43.478 0.00 0.00 37.52 3.41
1940 2501 4.395542 GCTGCTGAGAAGATCAAAACTGAT 59.604 41.667 0.00 0.00 37.52 2.90
1941 2502 5.674068 GCTGCTGAGAAGATCAAAACTGATG 60.674 44.000 0.00 0.00 37.52 3.07
1942 2503 4.698780 TGCTGAGAAGATCAAAACTGATGG 59.301 41.667 0.00 0.00 37.52 3.51
1943 2504 4.699257 GCTGAGAAGATCAAAACTGATGGT 59.301 41.667 0.00 0.00 37.52 3.55
1944 2505 5.877012 GCTGAGAAGATCAAAACTGATGGTA 59.123 40.000 0.00 0.00 37.52 3.25
1945 2506 6.036953 GCTGAGAAGATCAAAACTGATGGTAG 59.963 42.308 0.00 0.00 37.52 3.18
1946 2507 6.409704 TGAGAAGATCAAAACTGATGGTAGG 58.590 40.000 0.00 0.00 34.02 3.18
1947 2508 6.213397 TGAGAAGATCAAAACTGATGGTAGGA 59.787 38.462 0.00 0.00 34.02 2.94
1948 2509 7.020827 AGAAGATCAAAACTGATGGTAGGAA 57.979 36.000 0.00 0.00 0.00 3.36
1949 2510 7.108847 AGAAGATCAAAACTGATGGTAGGAAG 58.891 38.462 0.00 0.00 0.00 3.46
1950 2511 6.627087 AGATCAAAACTGATGGTAGGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
1951 2512 6.648192 AGATCAAAACTGATGGTAGGAAGAG 58.352 40.000 0.00 0.00 0.00 2.85
1952 2513 6.441924 AGATCAAAACTGATGGTAGGAAGAGA 59.558 38.462 0.00 0.00 0.00 3.10
1953 2514 6.042638 TCAAAACTGATGGTAGGAAGAGAG 57.957 41.667 0.00 0.00 0.00 3.20
1954 2515 5.780282 TCAAAACTGATGGTAGGAAGAGAGA 59.220 40.000 0.00 0.00 0.00 3.10
1955 2516 5.930837 AAACTGATGGTAGGAAGAGAGAG 57.069 43.478 0.00 0.00 0.00 3.20
1956 2517 3.909732 ACTGATGGTAGGAAGAGAGAGG 58.090 50.000 0.00 0.00 0.00 3.69
1957 2518 3.230134 CTGATGGTAGGAAGAGAGAGGG 58.770 54.545 0.00 0.00 0.00 4.30
1958 2519 2.091055 TGATGGTAGGAAGAGAGAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
1959 2520 0.032017 TGGTAGGAAGAGAGAGGGGC 60.032 60.000 0.00 0.00 0.00 5.80
1960 2521 1.110518 GGTAGGAAGAGAGAGGGGCG 61.111 65.000 0.00 0.00 0.00 6.13
1961 2522 0.106619 GTAGGAAGAGAGAGGGGCGA 60.107 60.000 0.00 0.00 0.00 5.54
1962 2523 0.629596 TAGGAAGAGAGAGGGGCGAA 59.370 55.000 0.00 0.00 0.00 4.70
1963 2524 0.973496 AGGAAGAGAGAGGGGCGAAC 60.973 60.000 0.00 0.00 0.00 3.95
1964 2525 0.973496 GGAAGAGAGAGGGGCGAACT 60.973 60.000 0.00 0.00 0.00 3.01
1965 2526 0.458260 GAAGAGAGAGGGGCGAACTC 59.542 60.000 0.00 0.00 35.20 3.01
1966 2527 0.973496 AAGAGAGAGGGGCGAACTCC 60.973 60.000 0.00 0.00 35.58 3.85
1967 2528 1.380650 GAGAGAGGGGCGAACTCCT 60.381 63.158 0.00 0.00 35.58 3.69
1968 2529 0.106619 GAGAGAGGGGCGAACTCCTA 60.107 60.000 0.00 0.00 35.58 2.94
1969 2530 0.396001 AGAGAGGGGCGAACTCCTAC 60.396 60.000 0.00 0.00 35.58 3.18
1970 2531 0.683504 GAGAGGGGCGAACTCCTACA 60.684 60.000 0.00 0.00 35.58 2.74
1971 2532 0.252103 AGAGGGGCGAACTCCTACAA 60.252 55.000 0.00 0.00 35.58 2.41
1972 2533 0.611714 GAGGGGCGAACTCCTACAAA 59.388 55.000 0.00 0.00 32.74 2.83
1973 2534 1.002773 GAGGGGCGAACTCCTACAAAA 59.997 52.381 0.00 0.00 32.74 2.44
1974 2535 1.633945 AGGGGCGAACTCCTACAAAAT 59.366 47.619 0.00 0.00 0.00 1.82
1990 2551 5.110814 ACAAAATCCCGGATGACAATCTA 57.889 39.130 0.73 0.00 32.95 1.98
2002 2563 7.013274 CCGGATGACAATCTAATACATTTGGTT 59.987 37.037 0.00 0.00 32.95 3.67
2034 2595 4.630894 TTTTAAGGGCATGTCTAATGCG 57.369 40.909 0.00 0.00 45.41 4.73
2035 2596 3.275617 TTAAGGGCATGTCTAATGCGT 57.724 42.857 0.00 0.00 45.41 5.24
2036 2597 1.382522 AAGGGCATGTCTAATGCGTG 58.617 50.000 0.00 0.00 45.41 5.34
2037 2598 1.097547 AGGGCATGTCTAATGCGTGC 61.098 55.000 0.00 0.00 45.41 5.34
2038 2599 1.010797 GGCATGTCTAATGCGTGCG 60.011 57.895 4.37 0.00 46.52 5.34
2039 2600 1.652329 GCATGTCTAATGCGTGCGC 60.652 57.895 9.85 9.85 38.79 6.09
2040 2601 2.009108 CATGTCTAATGCGTGCGCT 58.991 52.632 17.49 0.87 42.51 5.92
2041 2602 0.374758 CATGTCTAATGCGTGCGCTT 59.625 50.000 17.49 8.59 42.51 4.68
2042 2603 1.592543 CATGTCTAATGCGTGCGCTTA 59.407 47.619 17.49 11.70 42.51 3.09
2043 2604 1.277326 TGTCTAATGCGTGCGCTTAG 58.723 50.000 17.49 18.79 42.51 2.18
2044 2605 0.577269 GTCTAATGCGTGCGCTTAGG 59.423 55.000 22.41 12.95 42.51 2.69
2045 2606 0.458260 TCTAATGCGTGCGCTTAGGA 59.542 50.000 22.41 14.34 42.51 2.94
2046 2607 1.068588 TCTAATGCGTGCGCTTAGGAT 59.931 47.619 22.41 3.56 42.51 3.24
2047 2608 1.193203 CTAATGCGTGCGCTTAGGATG 59.807 52.381 17.49 0.00 42.51 3.51
2048 2609 1.439353 AATGCGTGCGCTTAGGATGG 61.439 55.000 17.49 0.00 42.51 3.51
2049 2610 2.202878 GCGTGCGCTTAGGATGGA 60.203 61.111 9.73 0.00 38.26 3.41
2050 2611 2.526120 GCGTGCGCTTAGGATGGAC 61.526 63.158 9.73 0.00 38.26 4.02
2051 2612 2.230940 CGTGCGCTTAGGATGGACG 61.231 63.158 9.73 2.31 40.82 4.79
2053 2614 2.107141 GCGCTTAGGATGGACGCT 59.893 61.111 0.00 0.00 45.71 5.07
2054 2615 1.362717 GCGCTTAGGATGGACGCTA 59.637 57.895 0.00 0.00 45.71 4.26
2055 2616 0.664767 GCGCTTAGGATGGACGCTAG 60.665 60.000 0.00 0.00 45.71 3.42
2056 2617 0.039074 CGCTTAGGATGGACGCTAGG 60.039 60.000 0.00 0.00 0.00 3.02
2057 2618 1.329256 GCTTAGGATGGACGCTAGGA 58.671 55.000 0.00 0.00 0.00 2.94
2058 2619 1.896465 GCTTAGGATGGACGCTAGGAT 59.104 52.381 0.00 0.00 0.00 3.24
2059 2620 2.300437 GCTTAGGATGGACGCTAGGATT 59.700 50.000 0.00 0.00 0.00 3.01
2060 2621 3.510360 GCTTAGGATGGACGCTAGGATTA 59.490 47.826 0.00 0.00 0.00 1.75
2061 2622 4.381079 GCTTAGGATGGACGCTAGGATTAG 60.381 50.000 0.00 0.00 0.00 1.73
2062 2623 3.246416 AGGATGGACGCTAGGATTAGT 57.754 47.619 0.00 0.00 0.00 2.24
2063 2624 3.577919 AGGATGGACGCTAGGATTAGTT 58.422 45.455 0.00 0.00 0.00 2.24
2064 2625 3.967987 AGGATGGACGCTAGGATTAGTTT 59.032 43.478 0.00 0.00 0.00 2.66
2065 2626 4.039366 AGGATGGACGCTAGGATTAGTTTC 59.961 45.833 0.00 0.00 0.00 2.78
2066 2627 3.814005 TGGACGCTAGGATTAGTTTCC 57.186 47.619 0.00 0.00 33.69 3.13
2067 2628 3.101437 TGGACGCTAGGATTAGTTTCCA 58.899 45.455 0.00 0.00 37.49 3.53
2068 2629 3.132289 TGGACGCTAGGATTAGTTTCCAG 59.868 47.826 0.00 0.00 36.15 3.86
2069 2630 3.492829 GGACGCTAGGATTAGTTTCCAGG 60.493 52.174 0.00 0.00 38.32 4.45
2070 2631 2.158943 ACGCTAGGATTAGTTTCCAGGC 60.159 50.000 0.00 0.00 38.32 4.85
2071 2632 2.807108 CGCTAGGATTAGTTTCCAGGCC 60.807 54.545 0.00 0.00 38.32 5.19
2072 2633 2.172717 GCTAGGATTAGTTTCCAGGCCA 59.827 50.000 5.01 0.00 38.32 5.36
2073 2634 3.371595 GCTAGGATTAGTTTCCAGGCCAA 60.372 47.826 5.01 0.00 38.32 4.52
2074 2635 4.689983 GCTAGGATTAGTTTCCAGGCCAAT 60.690 45.833 5.01 0.00 38.32 3.16
2075 2636 4.337264 AGGATTAGTTTCCAGGCCAATT 57.663 40.909 5.01 0.00 38.32 2.32
2076 2637 5.466127 AGGATTAGTTTCCAGGCCAATTA 57.534 39.130 5.01 0.00 38.32 1.40
2077 2638 5.449553 AGGATTAGTTTCCAGGCCAATTAG 58.550 41.667 5.01 0.00 38.32 1.73
2078 2639 4.038042 GGATTAGTTTCCAGGCCAATTAGC 59.962 45.833 5.01 0.00 35.72 3.09
2079 2640 2.603075 AGTTTCCAGGCCAATTAGCA 57.397 45.000 5.01 0.00 0.00 3.49
2080 2641 2.450476 AGTTTCCAGGCCAATTAGCAG 58.550 47.619 5.01 0.00 0.00 4.24
2081 2642 2.171003 GTTTCCAGGCCAATTAGCAGT 58.829 47.619 5.01 0.00 0.00 4.40
2082 2643 2.562738 GTTTCCAGGCCAATTAGCAGTT 59.437 45.455 5.01 0.00 0.00 3.16
2083 2644 3.730215 TTCCAGGCCAATTAGCAGTTA 57.270 42.857 5.01 0.00 0.00 2.24
2084 2645 3.730215 TCCAGGCCAATTAGCAGTTAA 57.270 42.857 5.01 0.00 0.00 2.01
2085 2646 4.249638 TCCAGGCCAATTAGCAGTTAAT 57.750 40.909 5.01 0.00 33.33 1.40
2086 2647 4.207165 TCCAGGCCAATTAGCAGTTAATC 58.793 43.478 5.01 0.00 30.65 1.75
2087 2648 3.003689 CCAGGCCAATTAGCAGTTAATCG 59.996 47.826 5.01 0.00 30.65 3.34
2088 2649 3.003689 CAGGCCAATTAGCAGTTAATCGG 59.996 47.826 5.01 0.00 30.28 4.18
2089 2650 2.949644 GGCCAATTAGCAGTTAATCGGT 59.050 45.455 0.00 0.00 29.89 4.69
2090 2651 3.380320 GGCCAATTAGCAGTTAATCGGTT 59.620 43.478 0.00 0.00 29.89 4.44
2091 2652 4.351192 GCCAATTAGCAGTTAATCGGTTG 58.649 43.478 0.00 0.00 29.89 3.77
2092 2653 4.095782 GCCAATTAGCAGTTAATCGGTTGA 59.904 41.667 0.00 0.00 29.89 3.18
2093 2654 5.392595 GCCAATTAGCAGTTAATCGGTTGAA 60.393 40.000 0.00 0.00 29.89 2.69
2094 2655 6.680378 GCCAATTAGCAGTTAATCGGTTGAAT 60.680 38.462 0.00 0.00 29.89 2.57
2095 2656 6.912591 CCAATTAGCAGTTAATCGGTTGAATC 59.087 38.462 0.00 0.00 30.65 2.52
2096 2657 6.619801 ATTAGCAGTTAATCGGTTGAATCC 57.380 37.500 0.00 0.00 0.00 3.01
2097 2658 4.222124 AGCAGTTAATCGGTTGAATCCT 57.778 40.909 0.00 0.00 0.00 3.24
2098 2659 3.941483 AGCAGTTAATCGGTTGAATCCTG 59.059 43.478 0.00 0.00 0.00 3.86
2099 2660 3.065371 GCAGTTAATCGGTTGAATCCTGG 59.935 47.826 0.00 0.00 0.00 4.45
2100 2661 4.261801 CAGTTAATCGGTTGAATCCTGGT 58.738 43.478 0.00 0.00 0.00 4.00
2101 2662 4.094887 CAGTTAATCGGTTGAATCCTGGTG 59.905 45.833 0.00 0.00 0.00 4.17
2102 2663 2.879103 AATCGGTTGAATCCTGGTGT 57.121 45.000 0.00 0.00 0.00 4.16
2103 2664 2.879103 ATCGGTTGAATCCTGGTGTT 57.121 45.000 0.00 0.00 0.00 3.32
2104 2665 3.992943 ATCGGTTGAATCCTGGTGTTA 57.007 42.857 0.00 0.00 0.00 2.41
2105 2666 3.048337 TCGGTTGAATCCTGGTGTTAC 57.952 47.619 0.00 0.00 0.00 2.50
2106 2667 1.730064 CGGTTGAATCCTGGTGTTACG 59.270 52.381 0.00 0.00 0.00 3.18
2107 2668 1.467342 GGTTGAATCCTGGTGTTACGC 59.533 52.381 0.00 0.00 0.00 4.42
2108 2669 1.467342 GTTGAATCCTGGTGTTACGCC 59.533 52.381 8.18 8.18 34.12 5.68
2109 2670 0.687920 TGAATCCTGGTGTTACGCCA 59.312 50.000 17.24 17.24 42.15 5.69
2123 2684 3.365265 GCCAGGCGTTGACCCAAG 61.365 66.667 0.00 0.00 0.00 3.61
2124 2685 2.672996 CCAGGCGTTGACCCAAGG 60.673 66.667 0.00 0.00 33.15 3.61
2125 2686 2.113139 CAGGCGTTGACCCAAGGT 59.887 61.111 0.00 0.00 39.44 3.50
2126 2687 2.113139 AGGCGTTGACCCAAGGTG 59.887 61.111 0.00 0.00 35.25 4.00
2127 2688 2.203294 GGCGTTGACCCAAGGTGT 60.203 61.111 0.00 0.00 35.25 4.16
2128 2689 1.826487 GGCGTTGACCCAAGGTGTT 60.826 57.895 0.00 0.00 35.25 3.32
2129 2690 1.358759 GCGTTGACCCAAGGTGTTG 59.641 57.895 0.00 0.00 35.25 3.33
2130 2691 1.358759 CGTTGACCCAAGGTGTTGC 59.641 57.895 0.00 0.00 35.25 4.17
2131 2692 1.358759 GTTGACCCAAGGTGTTGCG 59.641 57.895 0.00 0.00 35.25 4.85
2132 2693 1.077357 TTGACCCAAGGTGTTGCGT 60.077 52.632 0.00 0.00 35.25 5.24
2133 2694 1.098712 TTGACCCAAGGTGTTGCGTC 61.099 55.000 0.00 0.00 40.51 5.19
2134 2695 2.590575 ACCCAAGGTGTTGCGTCG 60.591 61.111 0.00 0.00 32.98 5.12
2135 2696 2.280524 CCCAAGGTGTTGCGTCGA 60.281 61.111 0.00 0.00 31.64 4.20
2136 2697 2.317609 CCCAAGGTGTTGCGTCGAG 61.318 63.158 0.00 0.00 31.64 4.04
2154 2715 3.098032 GCGCTTGCTCCTTTTTCTG 57.902 52.632 0.00 0.00 35.07 3.02
2155 2716 1.005804 GCGCTTGCTCCTTTTTCTGC 61.006 55.000 0.00 0.00 35.07 4.26
2156 2717 0.387750 CGCTTGCTCCTTTTTCTGCC 60.388 55.000 0.00 0.00 0.00 4.85
2157 2718 0.964700 GCTTGCTCCTTTTTCTGCCT 59.035 50.000 0.00 0.00 0.00 4.75
2158 2719 1.336609 GCTTGCTCCTTTTTCTGCCTG 60.337 52.381 0.00 0.00 0.00 4.85
2159 2720 0.675633 TTGCTCCTTTTTCTGCCTGC 59.324 50.000 0.00 0.00 0.00 4.85
2160 2721 0.178981 TGCTCCTTTTTCTGCCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
2161 2722 0.243095 GCTCCTTTTTCTGCCTGCTG 59.757 55.000 0.00 0.00 0.00 4.41
2162 2723 0.886563 CTCCTTTTTCTGCCTGCTGG 59.113 55.000 5.03 5.03 0.00 4.85
2163 2724 0.478072 TCCTTTTTCTGCCTGCTGGA 59.522 50.000 14.77 0.00 34.57 3.86
2164 2725 1.133513 TCCTTTTTCTGCCTGCTGGAA 60.134 47.619 14.77 0.88 34.57 3.53
2165 2726 1.271656 CCTTTTTCTGCCTGCTGGAAG 59.728 52.381 14.77 13.06 40.55 3.46
2187 2748 6.905544 AGCGCTAGGTTCTTTAATTTACTC 57.094 37.500 8.99 0.00 0.00 2.59
2188 2749 6.403878 AGCGCTAGGTTCTTTAATTTACTCA 58.596 36.000 8.99 0.00 0.00 3.41
2189 2750 6.877322 AGCGCTAGGTTCTTTAATTTACTCAA 59.123 34.615 8.99 0.00 0.00 3.02
2190 2751 6.959871 GCGCTAGGTTCTTTAATTTACTCAAC 59.040 38.462 0.00 0.00 0.00 3.18
2191 2752 7.360607 GCGCTAGGTTCTTTAATTTACTCAACA 60.361 37.037 0.00 0.00 0.00 3.33
2192 2753 8.169268 CGCTAGGTTCTTTAATTTACTCAACAG 58.831 37.037 0.00 0.00 0.00 3.16
2193 2754 9.216117 GCTAGGTTCTTTAATTTACTCAACAGA 57.784 33.333 0.00 0.00 0.00 3.41
2205 2766 7.421530 TTTACTCAACAGAATTAGTGTCTGC 57.578 36.000 1.41 0.00 45.35 4.26
2206 2767 4.319177 ACTCAACAGAATTAGTGTCTGCC 58.681 43.478 1.41 0.00 45.35 4.85
2207 2768 3.325870 TCAACAGAATTAGTGTCTGCCG 58.674 45.455 1.41 0.00 45.35 5.69
2208 2769 3.067106 CAACAGAATTAGTGTCTGCCGT 58.933 45.455 1.41 0.00 45.35 5.68
2209 2770 3.402628 ACAGAATTAGTGTCTGCCGTT 57.597 42.857 1.41 0.00 45.35 4.44
2210 2771 3.067106 ACAGAATTAGTGTCTGCCGTTG 58.933 45.455 1.41 0.00 45.35 4.10
2211 2772 2.076863 AGAATTAGTGTCTGCCGTTGC 58.923 47.619 0.00 0.00 38.26 4.17
2232 2793 2.125512 CGAGGGCGCTTAGTTGCT 60.126 61.111 7.64 0.00 0.00 3.91
2233 2794 1.741770 CGAGGGCGCTTAGTTGCTT 60.742 57.895 7.64 0.00 0.00 3.91
2234 2795 1.298859 CGAGGGCGCTTAGTTGCTTT 61.299 55.000 7.64 0.00 0.00 3.51
2235 2796 0.881796 GAGGGCGCTTAGTTGCTTTT 59.118 50.000 7.64 0.00 0.00 2.27
2236 2797 1.269723 GAGGGCGCTTAGTTGCTTTTT 59.730 47.619 7.64 0.00 0.00 1.94
2237 2798 1.269723 AGGGCGCTTAGTTGCTTTTTC 59.730 47.619 7.64 0.00 0.00 2.29
2238 2799 1.269723 GGGCGCTTAGTTGCTTTTTCT 59.730 47.619 7.64 0.00 0.00 2.52
2239 2800 2.486592 GGGCGCTTAGTTGCTTTTTCTA 59.513 45.455 7.64 0.00 0.00 2.10
2240 2801 3.128764 GGGCGCTTAGTTGCTTTTTCTAT 59.871 43.478 7.64 0.00 0.00 1.98
2241 2802 4.380550 GGGCGCTTAGTTGCTTTTTCTATT 60.381 41.667 7.64 0.00 0.00 1.73
2242 2803 5.161358 GGCGCTTAGTTGCTTTTTCTATTT 58.839 37.500 7.64 0.00 0.00 1.40
2243 2804 5.633601 GGCGCTTAGTTGCTTTTTCTATTTT 59.366 36.000 7.64 0.00 0.00 1.82
2244 2805 6.804783 GGCGCTTAGTTGCTTTTTCTATTTTA 59.195 34.615 7.64 0.00 0.00 1.52
2245 2806 7.201325 GGCGCTTAGTTGCTTTTTCTATTTTAC 60.201 37.037 7.64 0.00 0.00 2.01
2246 2807 7.201325 GCGCTTAGTTGCTTTTTCTATTTTACC 60.201 37.037 0.00 0.00 0.00 2.85
2247 2808 7.806014 CGCTTAGTTGCTTTTTCTATTTTACCA 59.194 33.333 0.00 0.00 0.00 3.25
2248 2809 9.639601 GCTTAGTTGCTTTTTCTATTTTACCAT 57.360 29.630 0.00 0.00 0.00 3.55
2276 2837 2.634982 TTTTTGCTGATAAGCGCCTG 57.365 45.000 2.29 0.00 37.69 4.85
2277 2838 1.533625 TTTTGCTGATAAGCGCCTGT 58.466 45.000 2.29 0.00 37.69 4.00
2278 2839 2.394930 TTTGCTGATAAGCGCCTGTA 57.605 45.000 2.29 0.00 37.69 2.74
2279 2840 2.620251 TTGCTGATAAGCGCCTGTAT 57.380 45.000 2.29 0.00 37.69 2.29
2280 2841 3.744238 TTGCTGATAAGCGCCTGTATA 57.256 42.857 2.29 0.00 37.69 1.47
2281 2842 3.744238 TGCTGATAAGCGCCTGTATAA 57.256 42.857 2.29 0.00 37.69 0.98
2282 2843 3.653344 TGCTGATAAGCGCCTGTATAAG 58.347 45.455 2.29 3.53 37.69 1.73
2283 2844 2.413453 GCTGATAAGCGCCTGTATAAGC 59.587 50.000 13.92 13.92 29.08 3.09
2289 2850 4.049393 GCCTGTATAAGCGGCTGG 57.951 61.111 1.81 0.00 40.62 4.85
2290 2851 2.254464 GCCTGTATAAGCGGCTGGC 61.254 63.158 1.81 7.19 40.62 4.85
2299 2860 4.147701 GCGGCTGGCATTGTAGAT 57.852 55.556 1.08 0.00 42.87 1.98
2300 2861 1.650912 GCGGCTGGCATTGTAGATG 59.349 57.895 1.08 0.00 42.87 2.90
2301 2862 1.650912 CGGCTGGCATTGTAGATGC 59.349 57.895 1.08 2.50 43.85 3.91
2302 2863 0.816825 CGGCTGGCATTGTAGATGCT 60.817 55.000 10.43 0.00 44.02 3.79
2303 2864 0.950116 GGCTGGCATTGTAGATGCTC 59.050 55.000 10.43 2.65 44.02 4.26
2382 2944 3.580731 TCACGAATCGTTGTATGCTTGA 58.419 40.909 5.20 0.00 38.32 3.02
2385 2947 4.549599 CACGAATCGTTGTATGCTTGAAAC 59.450 41.667 5.20 0.00 38.32 2.78
2387 2949 4.142902 CGAATCGTTGTATGCTTGAAACCT 60.143 41.667 0.00 0.00 0.00 3.50
2388 2950 4.685169 ATCGTTGTATGCTTGAAACCTG 57.315 40.909 0.00 0.00 0.00 4.00
2389 2951 2.225491 TCGTTGTATGCTTGAAACCTGC 59.775 45.455 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.631898 TGTTGGTTAGGGCTACTTCCC 59.368 52.381 0.00 0.00 46.93 3.97
18 19 3.200165 AGATGTTGGTTAGGGCTACTTCC 59.800 47.826 0.00 0.00 0.00 3.46
19 20 4.489306 AGATGTTGGTTAGGGCTACTTC 57.511 45.455 0.00 0.00 0.00 3.01
20 21 4.288626 TGAAGATGTTGGTTAGGGCTACTT 59.711 41.667 0.00 0.00 0.00 2.24
21 22 3.844211 TGAAGATGTTGGTTAGGGCTACT 59.156 43.478 0.00 0.00 0.00 2.57
22 23 4.081087 TCTGAAGATGTTGGTTAGGGCTAC 60.081 45.833 0.00 0.00 0.00 3.58
23 24 4.101114 TCTGAAGATGTTGGTTAGGGCTA 58.899 43.478 0.00 0.00 0.00 3.93
24 25 2.912956 TCTGAAGATGTTGGTTAGGGCT 59.087 45.455 0.00 0.00 0.00 5.19
25 26 3.350219 TCTGAAGATGTTGGTTAGGGC 57.650 47.619 0.00 0.00 0.00 5.19
26 27 4.080356 TGGATCTGAAGATGTTGGTTAGGG 60.080 45.833 0.00 0.00 34.37 3.53
27 28 5.102953 TGGATCTGAAGATGTTGGTTAGG 57.897 43.478 0.00 0.00 34.37 2.69
28 29 5.982356 TCTGGATCTGAAGATGTTGGTTAG 58.018 41.667 0.00 0.00 34.37 2.34
29 30 6.173339 GTTCTGGATCTGAAGATGTTGGTTA 58.827 40.000 0.00 0.00 34.37 2.85
30 31 4.916041 TCTGGATCTGAAGATGTTGGTT 57.084 40.909 0.00 0.00 34.37 3.67
31 32 4.566488 GGTTCTGGATCTGAAGATGTTGGT 60.566 45.833 0.00 0.00 34.37 3.67
32 33 3.944015 GGTTCTGGATCTGAAGATGTTGG 59.056 47.826 0.00 0.00 34.37 3.77
33 34 4.582869 TGGTTCTGGATCTGAAGATGTTG 58.417 43.478 0.00 0.00 34.37 3.33
34 35 4.916041 TGGTTCTGGATCTGAAGATGTT 57.084 40.909 0.00 0.00 34.37 2.71
35 36 4.324099 CCTTGGTTCTGGATCTGAAGATGT 60.324 45.833 0.00 0.00 34.37 3.06
36 37 4.080695 TCCTTGGTTCTGGATCTGAAGATG 60.081 45.833 0.00 0.00 34.37 2.90
37 38 4.080638 GTCCTTGGTTCTGGATCTGAAGAT 60.081 45.833 0.00 0.00 37.51 2.40
38 39 3.261897 GTCCTTGGTTCTGGATCTGAAGA 59.738 47.826 0.00 0.00 34.58 2.87
39 40 3.604582 GTCCTTGGTTCTGGATCTGAAG 58.395 50.000 0.00 0.00 34.58 3.02
40 41 2.028112 CGTCCTTGGTTCTGGATCTGAA 60.028 50.000 0.00 0.00 34.58 3.02
41 42 1.550524 CGTCCTTGGTTCTGGATCTGA 59.449 52.381 0.00 0.00 34.58 3.27
42 43 2.009042 GCGTCCTTGGTTCTGGATCTG 61.009 57.143 0.00 0.00 34.58 2.90
43 44 0.250513 GCGTCCTTGGTTCTGGATCT 59.749 55.000 0.00 0.00 34.58 2.75
44 45 0.250513 AGCGTCCTTGGTTCTGGATC 59.749 55.000 0.00 0.00 34.58 3.36
45 46 1.207329 GTAGCGTCCTTGGTTCTGGAT 59.793 52.381 0.00 0.00 34.58 3.41
46 47 0.606604 GTAGCGTCCTTGGTTCTGGA 59.393 55.000 0.00 0.00 0.00 3.86
47 48 0.736325 CGTAGCGTCCTTGGTTCTGG 60.736 60.000 0.00 0.00 0.00 3.86
48 49 0.242825 TCGTAGCGTCCTTGGTTCTG 59.757 55.000 0.00 0.00 0.00 3.02
49 50 0.526662 CTCGTAGCGTCCTTGGTTCT 59.473 55.000 0.00 0.00 0.00 3.01
50 51 1.077089 GCTCGTAGCGTCCTTGGTTC 61.077 60.000 0.00 0.00 0.00 3.62
51 52 1.080025 GCTCGTAGCGTCCTTGGTT 60.080 57.895 0.00 0.00 0.00 3.67
52 53 1.812686 TTGCTCGTAGCGTCCTTGGT 61.813 55.000 3.08 0.00 46.26 3.67
53 54 1.080093 TTGCTCGTAGCGTCCTTGG 60.080 57.895 3.08 0.00 46.26 3.61
54 55 0.388649 AGTTGCTCGTAGCGTCCTTG 60.389 55.000 3.08 0.00 46.26 3.61
55 56 1.171308 TAGTTGCTCGTAGCGTCCTT 58.829 50.000 3.08 0.00 46.26 3.36
56 57 1.132643 CTTAGTTGCTCGTAGCGTCCT 59.867 52.381 3.08 1.94 46.26 3.85
57 58 1.131883 TCTTAGTTGCTCGTAGCGTCC 59.868 52.381 3.08 0.00 46.26 4.79
58 59 2.175566 GTCTTAGTTGCTCGTAGCGTC 58.824 52.381 3.08 0.00 46.26 5.19
59 60 1.538512 TGTCTTAGTTGCTCGTAGCGT 59.461 47.619 3.08 0.00 46.26 5.07
60 61 2.177977 CTGTCTTAGTTGCTCGTAGCG 58.822 52.381 3.08 0.00 46.26 4.26
61 62 1.921230 GCTGTCTTAGTTGCTCGTAGC 59.079 52.381 0.58 0.58 42.82 3.58
62 63 2.177977 CGCTGTCTTAGTTGCTCGTAG 58.822 52.381 0.00 0.00 0.00 3.51
63 64 1.731424 GCGCTGTCTTAGTTGCTCGTA 60.731 52.381 0.00 0.00 0.00 3.43
64 65 1.009389 GCGCTGTCTTAGTTGCTCGT 61.009 55.000 0.00 0.00 0.00 4.18
65 66 1.687494 GGCGCTGTCTTAGTTGCTCG 61.687 60.000 7.64 0.00 32.64 5.03
66 67 0.390472 AGGCGCTGTCTTAGTTGCTC 60.390 55.000 7.64 0.00 32.64 4.26
67 68 0.035458 AAGGCGCTGTCTTAGTTGCT 59.965 50.000 7.64 0.00 32.64 3.91
68 69 0.444260 GAAGGCGCTGTCTTAGTTGC 59.556 55.000 7.64 0.00 0.00 4.17
69 70 1.461127 GTGAAGGCGCTGTCTTAGTTG 59.539 52.381 7.64 0.00 0.00 3.16
70 71 1.797025 GTGAAGGCGCTGTCTTAGTT 58.203 50.000 7.64 0.00 0.00 2.24
71 72 0.388649 CGTGAAGGCGCTGTCTTAGT 60.389 55.000 7.64 0.00 0.00 2.24
72 73 0.109272 TCGTGAAGGCGCTGTCTTAG 60.109 55.000 7.64 1.47 0.00 2.18
73 74 0.315886 TTCGTGAAGGCGCTGTCTTA 59.684 50.000 7.64 0.00 0.00 2.10
74 75 0.946221 CTTCGTGAAGGCGCTGTCTT 60.946 55.000 7.64 1.33 34.87 3.01
75 76 1.373497 CTTCGTGAAGGCGCTGTCT 60.373 57.895 7.64 0.00 34.87 3.41
76 77 3.159984 CTTCGTGAAGGCGCTGTC 58.840 61.111 7.64 5.56 34.87 3.51
84 85 1.328439 CGTCGTTCTCCTTCGTGAAG 58.672 55.000 2.57 2.57 38.14 3.02
85 86 0.662374 GCGTCGTTCTCCTTCGTGAA 60.662 55.000 0.00 0.00 0.00 3.18
86 87 1.081641 GCGTCGTTCTCCTTCGTGA 60.082 57.895 0.00 0.00 0.00 4.35
87 88 2.087009 GGCGTCGTTCTCCTTCGTG 61.087 63.158 0.00 0.00 0.00 4.35
88 89 2.257676 GGCGTCGTTCTCCTTCGT 59.742 61.111 0.00 0.00 0.00 3.85
89 90 2.874780 CGGCGTCGTTCTCCTTCG 60.875 66.667 0.00 0.00 0.00 3.79
90 91 1.514443 CTCGGCGTCGTTCTCCTTC 60.514 63.158 10.18 0.00 37.69 3.46
91 92 1.970114 TCTCGGCGTCGTTCTCCTT 60.970 57.895 10.18 0.00 37.69 3.36
92 93 2.359602 TCTCGGCGTCGTTCTCCT 60.360 61.111 10.18 0.00 37.69 3.69
93 94 2.202453 GTCTCGGCGTCGTTCTCC 60.202 66.667 10.18 0.00 37.69 3.71
94 95 2.573689 CGTCTCGGCGTCGTTCTC 60.574 66.667 10.18 0.00 37.69 2.87
95 96 4.755614 GCGTCTCGGCGTCGTTCT 62.756 66.667 10.18 0.00 37.69 3.01
114 115 1.512996 TATCTGGATCGGACGGCGAC 61.513 60.000 16.62 7.58 0.00 5.19
115 116 0.820482 TTATCTGGATCGGACGGCGA 60.820 55.000 16.62 0.00 0.00 5.54
116 117 0.663568 GTTATCTGGATCGGACGGCG 60.664 60.000 4.80 4.80 0.00 6.46
117 118 0.319641 GGTTATCTGGATCGGACGGC 60.320 60.000 0.00 0.00 0.00 5.68
118 119 0.039437 CGGTTATCTGGATCGGACGG 60.039 60.000 0.00 0.00 0.00 4.79
119 120 0.039437 CCGGTTATCTGGATCGGACG 60.039 60.000 0.00 0.00 42.94 4.79
120 121 1.325355 TCCGGTTATCTGGATCGGAC 58.675 55.000 0.00 0.00 43.49 4.79
121 122 3.833729 TCCGGTTATCTGGATCGGA 57.166 52.632 0.00 7.50 43.49 4.55
126 127 2.023695 ACCTTAGGTCCGGTTATCTGGA 60.024 50.000 0.00 0.00 45.86 3.86
127 128 2.395619 ACCTTAGGTCCGGTTATCTGG 58.604 52.381 0.00 1.35 41.27 3.86
128 129 4.439968 GAAACCTTAGGTCCGGTTATCTG 58.560 47.826 3.62 0.00 42.42 2.90
129 130 3.453717 GGAAACCTTAGGTCCGGTTATCT 59.546 47.826 3.62 0.00 42.42 1.98
130 131 3.801698 GGAAACCTTAGGTCCGGTTATC 58.198 50.000 3.62 0.00 42.42 1.75
131 132 3.920231 GGAAACCTTAGGTCCGGTTAT 57.080 47.619 3.62 0.00 42.42 1.89
140 141 7.952639 GAGCATCATCAGGGGAAACCTTAGG 62.953 52.000 0.00 0.00 41.63 2.69
141 142 4.985744 GAGCATCATCAGGGGAAACCTTAG 60.986 50.000 0.00 0.00 41.63 2.18
142 143 3.117888 GAGCATCATCAGGGGAAACCTTA 60.118 47.826 0.00 0.00 41.63 2.69
143 144 2.357569 GAGCATCATCAGGGGAAACCTT 60.358 50.000 0.00 0.00 41.63 3.50
144 145 1.213926 GAGCATCATCAGGGGAAACCT 59.786 52.381 0.00 0.00 43.77 3.50
145 146 1.685148 GAGCATCATCAGGGGAAACC 58.315 55.000 0.00 0.00 43.53 3.27
146 147 1.303309 CGAGCATCATCAGGGGAAAC 58.697 55.000 0.00 0.00 33.17 2.78
147 148 0.911769 ACGAGCATCATCAGGGGAAA 59.088 50.000 0.00 0.00 33.17 3.13
148 149 1.688735 CTACGAGCATCATCAGGGGAA 59.311 52.381 0.00 0.00 33.17 3.97
149 150 1.133482 TCTACGAGCATCATCAGGGGA 60.133 52.381 0.00 0.00 33.17 4.81
150 151 1.271934 CTCTACGAGCATCATCAGGGG 59.728 57.143 0.00 0.00 33.17 4.79
151 152 1.271934 CCTCTACGAGCATCATCAGGG 59.728 57.143 0.00 0.00 33.17 4.45
152 153 1.271934 CCCTCTACGAGCATCATCAGG 59.728 57.143 0.00 0.00 33.17 3.86
153 154 1.271934 CCCCTCTACGAGCATCATCAG 59.728 57.143 0.00 0.00 33.17 2.90
154 155 1.332195 CCCCTCTACGAGCATCATCA 58.668 55.000 0.00 0.00 33.17 3.07
155 156 0.037790 GCCCCTCTACGAGCATCATC 60.038 60.000 0.00 0.00 33.17 2.92
156 157 0.760567 TGCCCCTCTACGAGCATCAT 60.761 55.000 0.00 0.00 33.17 2.45
157 158 1.381191 TGCCCCTCTACGAGCATCA 60.381 57.895 0.00 0.00 33.17 3.07
158 159 1.068250 GTGCCCCTCTACGAGCATC 59.932 63.158 0.00 0.00 37.60 3.91
159 160 1.264749 TTGTGCCCCTCTACGAGCAT 61.265 55.000 0.00 0.00 37.60 3.79
160 161 1.476845 TTTGTGCCCCTCTACGAGCA 61.477 55.000 0.00 0.00 0.00 4.26
161 162 1.019805 GTTTGTGCCCCTCTACGAGC 61.020 60.000 0.00 0.00 0.00 5.03
162 163 0.320374 TGTTTGTGCCCCTCTACGAG 59.680 55.000 0.00 0.00 0.00 4.18
163 164 0.981183 ATGTTTGTGCCCCTCTACGA 59.019 50.000 0.00 0.00 0.00 3.43
164 165 1.369625 GATGTTTGTGCCCCTCTACG 58.630 55.000 0.00 0.00 0.00 3.51
165 166 1.369625 CGATGTTTGTGCCCCTCTAC 58.630 55.000 0.00 0.00 0.00 2.59
166 167 0.251916 CCGATGTTTGTGCCCCTCTA 59.748 55.000 0.00 0.00 0.00 2.43
167 168 1.002134 CCGATGTTTGTGCCCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
168 169 1.303317 ACCGATGTTTGTGCCCCTC 60.303 57.895 0.00 0.00 0.00 4.30
169 170 1.303317 GACCGATGTTTGTGCCCCT 60.303 57.895 0.00 0.00 0.00 4.79
170 171 2.686816 CGACCGATGTTTGTGCCCC 61.687 63.158 0.00 0.00 0.00 5.80
171 172 1.964373 ACGACCGATGTTTGTGCCC 60.964 57.895 0.00 0.00 0.00 5.36
172 173 1.206578 CACGACCGATGTTTGTGCC 59.793 57.895 0.00 0.00 0.00 5.01
173 174 0.110823 GTCACGACCGATGTTTGTGC 60.111 55.000 0.00 0.00 33.57 4.57
174 175 1.213491 TGTCACGACCGATGTTTGTG 58.787 50.000 0.00 0.00 34.35 3.33
175 176 1.595794 GTTGTCACGACCGATGTTTGT 59.404 47.619 0.00 0.00 0.00 2.83
176 177 2.294479 GTTGTCACGACCGATGTTTG 57.706 50.000 0.00 0.00 0.00 2.93
187 188 4.242960 CCTCTTTGGAAGCGTTGTCACG 62.243 54.545 0.00 0.00 43.66 4.35
188 189 1.264288 CCTCTTTGGAAGCGTTGTCAC 59.736 52.381 0.00 0.00 38.35 3.67
189 190 1.593196 CCTCTTTGGAAGCGTTGTCA 58.407 50.000 0.00 0.00 38.35 3.58
190 191 0.875059 CCCTCTTTGGAAGCGTTGTC 59.125 55.000 0.00 0.00 38.35 3.18
191 192 0.472471 TCCCTCTTTGGAAGCGTTGT 59.528 50.000 0.00 0.00 38.35 3.32
192 193 1.740025 GATCCCTCTTTGGAAGCGTTG 59.260 52.381 0.00 0.00 38.10 4.10
193 194 1.630878 AGATCCCTCTTTGGAAGCGTT 59.369 47.619 0.00 0.00 38.10 4.84
194 195 1.208293 GAGATCCCTCTTTGGAAGCGT 59.792 52.381 0.00 0.00 38.10 5.07
195 196 1.946745 GAGATCCCTCTTTGGAAGCG 58.053 55.000 0.00 0.00 38.10 4.68
205 206 9.674068 AAATACAAGTCTTTTTAGAGATCCCTC 57.326 33.333 0.00 0.00 39.72 4.30
278 283 4.174762 TGTGCGTATGTATAAGCGTTTGA 58.825 39.130 0.00 0.00 40.00 2.69
303 308 5.083389 GCGTGCGTTCATAAAAATGAGTTA 58.917 37.500 0.00 0.00 31.46 2.24
312 317 1.154562 GCGTGCGTGCGTTCATAAA 60.155 52.632 3.11 0.00 0.00 1.40
470 475 1.969208 GACAGTATACCCAGCCTACCC 59.031 57.143 0.00 0.00 0.00 3.69
535 667 4.202367 ACACAAGTAACTCCTAGCAAGCTT 60.202 41.667 0.00 0.00 0.00 3.74
581 1072 0.107848 CCGGGTCTTGGGTACACATC 60.108 60.000 0.00 0.00 0.00 3.06
591 1082 0.249398 CTCCTTGGTACCGGGTCTTG 59.751 60.000 19.17 8.23 0.00 3.02
602 1093 3.170717 TCCGTATCAGTTTCTCCTTGGT 58.829 45.455 0.00 0.00 0.00 3.67
633 1124 3.570125 CGGCCTATGATCTGTCTTCACTA 59.430 47.826 0.00 0.00 0.00 2.74
719 1210 1.318158 GGTACCCACTCGGATCACGT 61.318 60.000 0.00 0.00 44.69 4.49
776 1267 2.719046 CGCGCTTTTGGTTTACTTCTTG 59.281 45.455 5.56 0.00 0.00 3.02
860 1351 0.108992 TTGTGGTGTAGCGGACGATC 60.109 55.000 0.00 0.00 0.00 3.69
930 1422 1.321074 AACCCCGGATGACTCGACTC 61.321 60.000 0.73 0.00 0.00 3.36
1090 1586 3.499737 CGCGCATCCCTTGGTGAC 61.500 66.667 8.75 0.00 0.00 3.67
1354 1850 4.043100 GGGCCTAAAGCACCCGGT 62.043 66.667 0.84 0.00 46.50 5.28
1373 1869 1.026718 ATCCTAAGCAACAGCGTGCC 61.027 55.000 6.47 0.00 46.14 5.01
1416 1913 1.453900 CCAATAAAACACGCGCAAACC 59.546 47.619 5.73 0.00 0.00 3.27
1432 1929 3.025322 TCACCACACCAAGAAACCAAT 57.975 42.857 0.00 0.00 0.00 3.16
1463 1960 1.679139 ACATATGGTGTTGGATGCCG 58.321 50.000 7.80 0.00 38.01 5.69
1478 1990 3.813724 AGCTCGATCAACTACGCTACATA 59.186 43.478 0.00 0.00 0.00 2.29
1566 2078 3.530535 TCAGCCGATCAATCATTTTCGA 58.469 40.909 1.78 0.00 33.59 3.71
1719 2237 6.098266 TGGCAATTAGATCAGCTAGACACTAA 59.902 38.462 0.00 2.21 34.95 2.24
1751 2282 2.606108 TGACTCCAACAATCGATCACG 58.394 47.619 0.00 0.00 41.26 4.35
1787 2318 4.142004 ACGGATAATAAGCTTGACCGAGTT 60.142 41.667 25.61 10.65 41.09 3.01
1832 2363 7.744276 CGTAATCGAACAATCACAATTCTCAAA 59.256 33.333 0.00 0.00 39.71 2.69
1881 2412 3.332187 TGGGGTCAATTGATAGAACCACA 59.668 43.478 12.12 12.54 43.56 4.17
1903 2464 1.066430 CAGCAGCTTCCCATTGCATTT 60.066 47.619 0.00 0.00 40.22 2.32
1907 2468 0.679002 TCTCAGCAGCTTCCCATTGC 60.679 55.000 0.00 0.00 38.09 3.56
1911 2472 1.209019 GATCTTCTCAGCAGCTTCCCA 59.791 52.381 0.00 0.00 0.00 4.37
1912 2473 1.209019 TGATCTTCTCAGCAGCTTCCC 59.791 52.381 0.00 0.00 0.00 3.97
1913 2474 2.687700 TGATCTTCTCAGCAGCTTCC 57.312 50.000 0.00 0.00 0.00 3.46
1915 2476 4.215827 CAGTTTTGATCTTCTCAGCAGCTT 59.784 41.667 0.00 0.00 34.68 3.74
1916 2477 3.752222 CAGTTTTGATCTTCTCAGCAGCT 59.248 43.478 0.00 0.00 34.68 4.24
1917 2478 3.750130 TCAGTTTTGATCTTCTCAGCAGC 59.250 43.478 0.00 0.00 34.68 5.25
1918 2479 5.163744 CCATCAGTTTTGATCTTCTCAGCAG 60.164 44.000 0.00 0.00 42.12 4.24
1919 2480 4.698780 CCATCAGTTTTGATCTTCTCAGCA 59.301 41.667 0.00 0.00 42.12 4.41
1920 2481 4.699257 ACCATCAGTTTTGATCTTCTCAGC 59.301 41.667 0.00 0.00 42.12 4.26
1921 2482 6.538021 CCTACCATCAGTTTTGATCTTCTCAG 59.462 42.308 0.00 0.00 42.12 3.35
1922 2483 6.213397 TCCTACCATCAGTTTTGATCTTCTCA 59.787 38.462 0.00 0.00 42.12 3.27
1923 2484 6.644347 TCCTACCATCAGTTTTGATCTTCTC 58.356 40.000 0.00 0.00 42.12 2.87
1924 2485 6.627087 TCCTACCATCAGTTTTGATCTTCT 57.373 37.500 0.00 0.00 42.12 2.85
1925 2486 7.106239 TCTTCCTACCATCAGTTTTGATCTTC 58.894 38.462 0.00 0.00 42.12 2.87
1926 2487 7.020827 TCTTCCTACCATCAGTTTTGATCTT 57.979 36.000 0.00 0.00 42.12 2.40
1927 2488 6.441924 TCTCTTCCTACCATCAGTTTTGATCT 59.558 38.462 0.00 0.00 42.12 2.75
1928 2489 6.644347 TCTCTTCCTACCATCAGTTTTGATC 58.356 40.000 0.00 0.00 42.12 2.92
1929 2490 6.441924 TCTCTCTTCCTACCATCAGTTTTGAT 59.558 38.462 0.00 0.00 44.87 2.57
1930 2491 5.780282 TCTCTCTTCCTACCATCAGTTTTGA 59.220 40.000 0.00 0.00 37.81 2.69
1931 2492 6.042638 TCTCTCTTCCTACCATCAGTTTTG 57.957 41.667 0.00 0.00 0.00 2.44
1932 2493 5.188751 CCTCTCTCTTCCTACCATCAGTTTT 59.811 44.000 0.00 0.00 0.00 2.43
1933 2494 4.714308 CCTCTCTCTTCCTACCATCAGTTT 59.286 45.833 0.00 0.00 0.00 2.66
1934 2495 4.285863 CCTCTCTCTTCCTACCATCAGTT 58.714 47.826 0.00 0.00 0.00 3.16
1935 2496 3.373658 CCCTCTCTCTTCCTACCATCAGT 60.374 52.174 0.00 0.00 0.00 3.41
1936 2497 3.230134 CCCTCTCTCTTCCTACCATCAG 58.770 54.545 0.00 0.00 0.00 2.90
1937 2498 2.091055 CCCCTCTCTCTTCCTACCATCA 60.091 54.545 0.00 0.00 0.00 3.07
1938 2499 2.604139 CCCCTCTCTCTTCCTACCATC 58.396 57.143 0.00 0.00 0.00 3.51
1939 2500 1.413808 GCCCCTCTCTCTTCCTACCAT 60.414 57.143 0.00 0.00 0.00 3.55
1940 2501 0.032017 GCCCCTCTCTCTTCCTACCA 60.032 60.000 0.00 0.00 0.00 3.25
1941 2502 1.110518 CGCCCCTCTCTCTTCCTACC 61.111 65.000 0.00 0.00 0.00 3.18
1942 2503 0.106619 TCGCCCCTCTCTCTTCCTAC 60.107 60.000 0.00 0.00 0.00 3.18
1943 2504 0.629596 TTCGCCCCTCTCTCTTCCTA 59.370 55.000 0.00 0.00 0.00 2.94
1944 2505 0.973496 GTTCGCCCCTCTCTCTTCCT 60.973 60.000 0.00 0.00 0.00 3.36
1945 2506 0.973496 AGTTCGCCCCTCTCTCTTCC 60.973 60.000 0.00 0.00 0.00 3.46
1946 2507 0.458260 GAGTTCGCCCCTCTCTCTTC 59.542 60.000 0.00 0.00 0.00 2.87
1947 2508 0.973496 GGAGTTCGCCCCTCTCTCTT 60.973 60.000 0.00 0.00 0.00 2.85
1948 2509 1.380650 GGAGTTCGCCCCTCTCTCT 60.381 63.158 0.00 0.00 0.00 3.10
1949 2510 0.106619 TAGGAGTTCGCCCCTCTCTC 60.107 60.000 0.00 0.00 34.11 3.20
1950 2511 0.396001 GTAGGAGTTCGCCCCTCTCT 60.396 60.000 0.00 0.00 34.11 3.10
1951 2512 0.683504 TGTAGGAGTTCGCCCCTCTC 60.684 60.000 0.00 0.00 34.11 3.20
1952 2513 0.252103 TTGTAGGAGTTCGCCCCTCT 60.252 55.000 0.00 0.00 34.11 3.69
1953 2514 0.611714 TTTGTAGGAGTTCGCCCCTC 59.388 55.000 0.00 0.00 34.11 4.30
1954 2515 1.061546 TTTTGTAGGAGTTCGCCCCT 58.938 50.000 0.00 0.00 36.60 4.79
1955 2516 2.014857 GATTTTGTAGGAGTTCGCCCC 58.985 52.381 0.00 0.00 0.00 5.80
1956 2517 2.014857 GGATTTTGTAGGAGTTCGCCC 58.985 52.381 0.00 0.00 0.00 6.13
1957 2518 2.014857 GGGATTTTGTAGGAGTTCGCC 58.985 52.381 0.00 0.00 0.00 5.54
1958 2519 1.664151 CGGGATTTTGTAGGAGTTCGC 59.336 52.381 0.00 0.00 0.00 4.70
1959 2520 2.093869 TCCGGGATTTTGTAGGAGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
1960 2521 3.622166 TCCGGGATTTTGTAGGAGTTC 57.378 47.619 0.00 0.00 0.00 3.01
1961 2522 3.521937 TCATCCGGGATTTTGTAGGAGTT 59.478 43.478 6.84 0.00 34.14 3.01
1962 2523 3.112263 TCATCCGGGATTTTGTAGGAGT 58.888 45.455 6.84 0.00 34.14 3.85
1963 2524 3.118408 TGTCATCCGGGATTTTGTAGGAG 60.118 47.826 6.84 0.00 34.14 3.69
1964 2525 2.841266 TGTCATCCGGGATTTTGTAGGA 59.159 45.455 6.84 0.00 35.24 2.94
1965 2526 3.275617 TGTCATCCGGGATTTTGTAGG 57.724 47.619 6.84 0.00 0.00 3.18
1966 2527 5.126067 AGATTGTCATCCGGGATTTTGTAG 58.874 41.667 6.84 0.00 0.00 2.74
1967 2528 5.110814 AGATTGTCATCCGGGATTTTGTA 57.889 39.130 6.84 0.00 0.00 2.41
1968 2529 3.968265 AGATTGTCATCCGGGATTTTGT 58.032 40.909 6.84 0.00 0.00 2.83
1969 2530 6.639632 ATTAGATTGTCATCCGGGATTTTG 57.360 37.500 6.84 0.00 0.00 2.44
1970 2531 7.287061 TGTATTAGATTGTCATCCGGGATTTT 58.713 34.615 6.84 0.00 0.00 1.82
1971 2532 6.837312 TGTATTAGATTGTCATCCGGGATTT 58.163 36.000 6.84 0.00 0.00 2.17
1972 2533 6.433847 TGTATTAGATTGTCATCCGGGATT 57.566 37.500 6.84 0.00 0.00 3.01
1973 2534 6.627087 ATGTATTAGATTGTCATCCGGGAT 57.373 37.500 2.97 2.97 0.00 3.85
1974 2535 6.433847 AATGTATTAGATTGTCATCCGGGA 57.566 37.500 0.00 0.00 0.00 5.14
2016 2577 2.560504 CACGCATTAGACATGCCCTTA 58.439 47.619 0.00 0.00 41.71 2.69
2017 2578 1.382522 CACGCATTAGACATGCCCTT 58.617 50.000 0.00 0.00 41.71 3.95
2018 2579 1.097547 GCACGCATTAGACATGCCCT 61.098 55.000 0.00 0.00 41.71 5.19
2019 2580 1.356624 GCACGCATTAGACATGCCC 59.643 57.895 0.00 0.00 41.71 5.36
2020 2581 1.010797 CGCACGCATTAGACATGCC 60.011 57.895 0.00 0.00 41.71 4.40
2021 2582 1.652329 GCGCACGCATTAGACATGC 60.652 57.895 10.65 0.00 41.49 4.06
2022 2583 0.374758 AAGCGCACGCATTAGACATG 59.625 50.000 18.24 0.00 44.88 3.21
2023 2584 1.860950 CTAAGCGCACGCATTAGACAT 59.139 47.619 18.24 0.00 44.88 3.06
2024 2585 1.277326 CTAAGCGCACGCATTAGACA 58.723 50.000 18.24 0.00 44.88 3.41
2025 2586 0.577269 CCTAAGCGCACGCATTAGAC 59.423 55.000 23.46 0.00 44.88 2.59
2026 2587 0.458260 TCCTAAGCGCACGCATTAGA 59.542 50.000 23.46 12.28 44.88 2.10
2027 2588 1.193203 CATCCTAAGCGCACGCATTAG 59.807 52.381 18.24 18.57 44.88 1.73
2028 2589 1.217001 CATCCTAAGCGCACGCATTA 58.783 50.000 18.24 11.29 44.88 1.90
2029 2590 1.439353 CCATCCTAAGCGCACGCATT 61.439 55.000 18.24 10.76 44.88 3.56
2030 2591 1.889105 CCATCCTAAGCGCACGCAT 60.889 57.895 18.24 8.01 44.88 4.73
2031 2592 2.511373 CCATCCTAAGCGCACGCA 60.511 61.111 18.24 0.00 44.88 5.24
2032 2593 2.202878 TCCATCCTAAGCGCACGC 60.203 61.111 11.47 6.99 42.33 5.34
2033 2594 2.230940 CGTCCATCCTAAGCGCACG 61.231 63.158 11.47 2.96 0.00 5.34
2034 2595 2.526120 GCGTCCATCCTAAGCGCAC 61.526 63.158 11.47 0.00 46.23 5.34
2035 2596 2.202878 GCGTCCATCCTAAGCGCA 60.203 61.111 11.47 0.00 46.23 6.09
2037 2598 0.039074 CCTAGCGTCCATCCTAAGCG 60.039 60.000 0.00 0.00 0.00 4.68
2038 2599 1.329256 TCCTAGCGTCCATCCTAAGC 58.671 55.000 0.00 0.00 0.00 3.09
2039 2600 4.767928 ACTAATCCTAGCGTCCATCCTAAG 59.232 45.833 0.00 0.00 0.00 2.18
2040 2601 4.737578 ACTAATCCTAGCGTCCATCCTAA 58.262 43.478 0.00 0.00 0.00 2.69
2041 2602 4.383931 ACTAATCCTAGCGTCCATCCTA 57.616 45.455 0.00 0.00 0.00 2.94
2042 2603 3.246416 ACTAATCCTAGCGTCCATCCT 57.754 47.619 0.00 0.00 0.00 3.24
2043 2604 4.308265 GAAACTAATCCTAGCGTCCATCC 58.692 47.826 0.00 0.00 0.00 3.51
2044 2605 4.202223 TGGAAACTAATCCTAGCGTCCATC 60.202 45.833 0.00 0.00 36.86 3.51
2045 2606 3.709653 TGGAAACTAATCCTAGCGTCCAT 59.290 43.478 0.00 0.00 36.86 3.41
2046 2607 3.101437 TGGAAACTAATCCTAGCGTCCA 58.899 45.455 0.00 0.00 38.32 4.02
2047 2608 3.492829 CCTGGAAACTAATCCTAGCGTCC 60.493 52.174 0.00 0.00 40.35 4.79
2048 2609 3.718815 CCTGGAAACTAATCCTAGCGTC 58.281 50.000 0.00 0.00 40.35 5.19
2049 2610 2.158943 GCCTGGAAACTAATCCTAGCGT 60.159 50.000 0.00 0.00 40.35 5.07
2050 2611 2.484889 GCCTGGAAACTAATCCTAGCG 58.515 52.381 0.00 0.00 40.35 4.26
2051 2612 2.172717 TGGCCTGGAAACTAATCCTAGC 59.827 50.000 3.32 0.00 40.35 3.42
2052 2613 4.503714 TTGGCCTGGAAACTAATCCTAG 57.496 45.455 3.32 0.00 40.35 3.02
2053 2614 5.466127 AATTGGCCTGGAAACTAATCCTA 57.534 39.130 3.32 0.00 40.35 2.94
2054 2615 4.337264 AATTGGCCTGGAAACTAATCCT 57.663 40.909 3.32 0.00 40.35 3.24
2055 2616 4.038042 GCTAATTGGCCTGGAAACTAATCC 59.962 45.833 3.32 0.00 40.10 3.01
2056 2617 4.644685 TGCTAATTGGCCTGGAAACTAATC 59.355 41.667 11.64 0.00 0.00 1.75
2057 2618 4.609301 TGCTAATTGGCCTGGAAACTAAT 58.391 39.130 11.64 0.00 0.00 1.73
2058 2619 4.016444 CTGCTAATTGGCCTGGAAACTAA 58.984 43.478 11.64 0.00 0.00 2.24
2059 2620 3.010138 ACTGCTAATTGGCCTGGAAACTA 59.990 43.478 11.64 0.00 0.00 2.24
2060 2621 2.225117 ACTGCTAATTGGCCTGGAAACT 60.225 45.455 11.64 0.00 0.00 2.66
2061 2622 2.171003 ACTGCTAATTGGCCTGGAAAC 58.829 47.619 11.64 0.00 0.00 2.78
2062 2623 2.603075 ACTGCTAATTGGCCTGGAAA 57.397 45.000 11.64 0.00 0.00 3.13
2063 2624 2.603075 AACTGCTAATTGGCCTGGAA 57.397 45.000 11.64 0.00 0.00 3.53
2064 2625 3.730215 TTAACTGCTAATTGGCCTGGA 57.270 42.857 11.64 0.00 0.00 3.86
2065 2626 3.003689 CGATTAACTGCTAATTGGCCTGG 59.996 47.826 11.64 4.37 29.89 4.45
2066 2627 3.003689 CCGATTAACTGCTAATTGGCCTG 59.996 47.826 11.64 6.83 42.33 4.85
2067 2628 3.214328 CCGATTAACTGCTAATTGGCCT 58.786 45.455 11.64 0.00 42.33 5.19
2068 2629 3.626028 CCGATTAACTGCTAATTGGCC 57.374 47.619 11.64 0.00 42.33 5.36
2071 2632 6.912591 GGATTCAACCGATTAACTGCTAATTG 59.087 38.462 0.00 0.00 32.83 2.32
2072 2633 6.828785 AGGATTCAACCGATTAACTGCTAATT 59.171 34.615 0.00 0.00 29.89 1.40
2073 2634 6.260936 CAGGATTCAACCGATTAACTGCTAAT 59.739 38.462 0.00 0.00 32.60 1.73
2074 2635 5.584649 CAGGATTCAACCGATTAACTGCTAA 59.415 40.000 0.00 0.00 34.73 3.09
2075 2636 5.116180 CAGGATTCAACCGATTAACTGCTA 58.884 41.667 0.00 0.00 34.73 3.49
2076 2637 3.941483 CAGGATTCAACCGATTAACTGCT 59.059 43.478 0.00 0.00 34.73 4.24
2077 2638 3.065371 CCAGGATTCAACCGATTAACTGC 59.935 47.826 0.00 0.00 34.73 4.40
2078 2639 4.094887 CACCAGGATTCAACCGATTAACTG 59.905 45.833 0.00 0.00 34.73 3.16
2079 2640 4.261801 CACCAGGATTCAACCGATTAACT 58.738 43.478 0.00 0.00 34.73 2.24
2080 2641 4.007659 ACACCAGGATTCAACCGATTAAC 58.992 43.478 0.00 0.00 34.73 2.01
2081 2642 4.295141 ACACCAGGATTCAACCGATTAA 57.705 40.909 0.00 0.00 34.73 1.40
2082 2643 3.992943 ACACCAGGATTCAACCGATTA 57.007 42.857 0.00 0.00 34.73 1.75
2083 2644 2.879103 ACACCAGGATTCAACCGATT 57.121 45.000 0.00 0.00 34.73 3.34
2084 2645 2.879103 AACACCAGGATTCAACCGAT 57.121 45.000 0.00 0.00 34.73 4.18
2085 2646 2.610976 CGTAACACCAGGATTCAACCGA 60.611 50.000 0.00 0.00 34.73 4.69
2086 2647 1.730064 CGTAACACCAGGATTCAACCG 59.270 52.381 0.00 0.00 34.73 4.44
2087 2648 1.467342 GCGTAACACCAGGATTCAACC 59.533 52.381 0.00 0.00 0.00 3.77
2088 2649 1.467342 GGCGTAACACCAGGATTCAAC 59.533 52.381 0.00 0.00 0.00 3.18
2089 2650 1.072489 TGGCGTAACACCAGGATTCAA 59.928 47.619 0.00 0.00 32.06 2.69
2090 2651 0.687920 TGGCGTAACACCAGGATTCA 59.312 50.000 0.00 0.00 32.06 2.57
2091 2652 3.543884 TGGCGTAACACCAGGATTC 57.456 52.632 0.00 0.00 32.06 2.52
2106 2667 3.365265 CTTGGGTCAACGCCTGGC 61.365 66.667 9.11 9.11 0.00 4.85
2107 2668 2.672996 CCTTGGGTCAACGCCTGG 60.673 66.667 0.00 0.00 0.00 4.45
2108 2669 2.113139 ACCTTGGGTCAACGCCTG 59.887 61.111 0.00 0.00 0.00 4.85
2109 2670 2.113139 CACCTTGGGTCAACGCCT 59.887 61.111 0.00 0.00 31.02 5.52
2110 2671 1.826487 AACACCTTGGGTCAACGCC 60.826 57.895 0.00 0.00 31.02 5.68
2111 2672 1.358759 CAACACCTTGGGTCAACGC 59.641 57.895 0.00 0.00 31.02 4.84
2112 2673 1.358759 GCAACACCTTGGGTCAACG 59.641 57.895 0.00 0.00 31.02 4.10
2113 2674 1.358759 CGCAACACCTTGGGTCAAC 59.641 57.895 0.00 0.00 35.96 3.18
2114 2675 3.834726 CGCAACACCTTGGGTCAA 58.165 55.556 0.00 0.00 35.96 3.18
2118 2679 2.280524 TCGACGCAACACCTTGGG 60.281 61.111 0.00 0.00 44.14 4.12
2119 2680 2.954753 GCTCGACGCAACACCTTGG 61.955 63.158 0.00 0.00 38.92 3.61
2120 2681 2.551270 GCTCGACGCAACACCTTG 59.449 61.111 0.00 0.00 38.92 3.61
2121 2682 3.036084 CGCTCGACGCAACACCTT 61.036 61.111 7.47 0.00 39.08 3.50
2136 2697 1.005804 GCAGAAAAAGGAGCAAGCGC 61.006 55.000 0.00 0.00 38.99 5.92
2137 2698 0.387750 GGCAGAAAAAGGAGCAAGCG 60.388 55.000 0.00 0.00 0.00 4.68
2138 2699 0.964700 AGGCAGAAAAAGGAGCAAGC 59.035 50.000 0.00 0.00 0.00 4.01
2139 2700 1.336609 GCAGGCAGAAAAAGGAGCAAG 60.337 52.381 0.00 0.00 0.00 4.01
2140 2701 0.675633 GCAGGCAGAAAAAGGAGCAA 59.324 50.000 0.00 0.00 0.00 3.91
2141 2702 0.178981 AGCAGGCAGAAAAAGGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
2142 2703 0.243095 CAGCAGGCAGAAAAAGGAGC 59.757 55.000 0.00 0.00 0.00 4.70
2143 2704 0.886563 CCAGCAGGCAGAAAAAGGAG 59.113 55.000 0.00 0.00 0.00 3.69
2144 2705 0.478072 TCCAGCAGGCAGAAAAAGGA 59.522 50.000 0.00 0.00 33.74 3.36
2145 2706 1.271656 CTTCCAGCAGGCAGAAAAAGG 59.728 52.381 0.00 0.00 28.40 3.11
2146 2707 1.336609 GCTTCCAGCAGGCAGAAAAAG 60.337 52.381 0.00 0.00 41.89 2.27
2147 2708 0.675633 GCTTCCAGCAGGCAGAAAAA 59.324 50.000 0.00 0.00 41.89 1.94
2148 2709 1.518056 CGCTTCCAGCAGGCAGAAAA 61.518 55.000 0.00 0.00 42.58 2.29
2149 2710 1.968017 CGCTTCCAGCAGGCAGAAA 60.968 57.895 0.00 0.00 42.58 2.52
2150 2711 2.359107 CGCTTCCAGCAGGCAGAA 60.359 61.111 0.00 0.00 42.58 3.02
2152 2713 3.670637 TAGCGCTTCCAGCAGGCAG 62.671 63.158 18.68 0.00 42.58 4.85
2153 2714 3.670637 CTAGCGCTTCCAGCAGGCA 62.671 63.158 18.68 0.00 42.58 4.75
2154 2715 2.894387 CTAGCGCTTCCAGCAGGC 60.894 66.667 18.68 0.00 42.58 4.85
2155 2716 2.202987 CCTAGCGCTTCCAGCAGG 60.203 66.667 18.68 11.92 42.58 4.85
2156 2717 1.078848 AACCTAGCGCTTCCAGCAG 60.079 57.895 18.68 5.21 42.58 4.24
2157 2718 1.079127 GAACCTAGCGCTTCCAGCA 60.079 57.895 18.68 0.00 42.58 4.41
2158 2719 0.391793 AAGAACCTAGCGCTTCCAGC 60.392 55.000 18.68 2.81 38.02 4.85
2159 2720 2.100605 AAAGAACCTAGCGCTTCCAG 57.899 50.000 18.68 7.04 0.00 3.86
2160 2721 3.688694 TTAAAGAACCTAGCGCTTCCA 57.311 42.857 18.68 0.00 0.00 3.53
2161 2722 5.562506 AAATTAAAGAACCTAGCGCTTCC 57.437 39.130 18.68 0.14 0.00 3.46
2162 2723 7.064253 TGAGTAAATTAAAGAACCTAGCGCTTC 59.936 37.037 18.68 7.05 0.00 3.86
2163 2724 6.877322 TGAGTAAATTAAAGAACCTAGCGCTT 59.123 34.615 18.68 0.00 0.00 4.68
2164 2725 6.403878 TGAGTAAATTAAAGAACCTAGCGCT 58.596 36.000 17.26 17.26 0.00 5.92
2165 2726 6.657836 TGAGTAAATTAAAGAACCTAGCGC 57.342 37.500 0.00 0.00 0.00 5.92
2166 2727 8.025243 TGTTGAGTAAATTAAAGAACCTAGCG 57.975 34.615 0.00 0.00 0.00 4.26
2167 2728 9.216117 TCTGTTGAGTAAATTAAAGAACCTAGC 57.784 33.333 0.00 0.00 0.00 3.42
2179 2740 8.507249 GCAGACACTAATTCTGTTGAGTAAATT 58.493 33.333 1.59 0.00 42.26 1.82
2180 2741 7.119846 GGCAGACACTAATTCTGTTGAGTAAAT 59.880 37.037 1.59 0.00 42.26 1.40
2181 2742 6.426937 GGCAGACACTAATTCTGTTGAGTAAA 59.573 38.462 1.59 0.00 42.26 2.01
2182 2743 5.932303 GGCAGACACTAATTCTGTTGAGTAA 59.068 40.000 1.59 0.00 42.26 2.24
2183 2744 5.479306 GGCAGACACTAATTCTGTTGAGTA 58.521 41.667 1.59 0.00 42.26 2.59
2184 2745 4.319177 GGCAGACACTAATTCTGTTGAGT 58.681 43.478 1.59 0.00 42.26 3.41
2185 2746 3.369147 CGGCAGACACTAATTCTGTTGAG 59.631 47.826 1.59 0.00 42.26 3.02
2186 2747 3.244078 ACGGCAGACACTAATTCTGTTGA 60.244 43.478 0.00 0.00 42.26 3.18
2187 2748 3.067106 ACGGCAGACACTAATTCTGTTG 58.933 45.455 0.00 0.00 42.26 3.33
2188 2749 3.402628 ACGGCAGACACTAATTCTGTT 57.597 42.857 0.00 0.00 42.26 3.16
2189 2750 3.067106 CAACGGCAGACACTAATTCTGT 58.933 45.455 0.00 0.00 42.26 3.41
2190 2751 2.159653 GCAACGGCAGACACTAATTCTG 60.160 50.000 0.00 0.00 43.01 3.02
2191 2752 2.076863 GCAACGGCAGACACTAATTCT 58.923 47.619 0.00 0.00 40.72 2.40
2192 2753 2.527442 GCAACGGCAGACACTAATTC 57.473 50.000 0.00 0.00 40.72 2.17
2215 2776 1.298859 AAAGCAACTAAGCGCCCTCG 61.299 55.000 2.29 0.00 40.15 4.63
2216 2777 0.881796 AAAAGCAACTAAGCGCCCTC 59.118 50.000 2.29 0.00 40.15 4.30
2217 2778 1.269723 GAAAAAGCAACTAAGCGCCCT 59.730 47.619 2.29 0.00 40.15 5.19
2218 2779 1.269723 AGAAAAAGCAACTAAGCGCCC 59.730 47.619 2.29 0.00 40.15 6.13
2219 2780 2.706555 AGAAAAAGCAACTAAGCGCC 57.293 45.000 2.29 0.00 40.15 6.53
2220 2781 6.690704 AAAATAGAAAAAGCAACTAAGCGC 57.309 33.333 0.00 0.00 40.15 5.92
2221 2782 7.806014 TGGTAAAATAGAAAAAGCAACTAAGCG 59.194 33.333 0.00 0.00 40.15 4.68
2222 2783 9.639601 ATGGTAAAATAGAAAAAGCAACTAAGC 57.360 29.630 0.00 0.00 0.00 3.09
2262 2823 2.413453 GCTTATACAGGCGCTTATCAGC 59.587 50.000 7.64 10.46 43.41 4.26
2263 2824 2.663602 CGCTTATACAGGCGCTTATCAG 59.336 50.000 7.64 4.41 44.64 2.90
2264 2825 2.672714 CGCTTATACAGGCGCTTATCA 58.327 47.619 7.64 0.00 44.64 2.15
2273 2834 0.250467 ATGCCAGCCGCTTATACAGG 60.250 55.000 0.00 0.00 38.78 4.00
2274 2835 1.265095 CAATGCCAGCCGCTTATACAG 59.735 52.381 0.00 0.00 38.78 2.74
2275 2836 1.308047 CAATGCCAGCCGCTTATACA 58.692 50.000 0.00 0.00 38.78 2.29
2276 2837 1.308998 ACAATGCCAGCCGCTTATAC 58.691 50.000 0.00 0.00 38.78 1.47
2277 2838 2.367241 TCTACAATGCCAGCCGCTTATA 59.633 45.455 0.00 0.00 38.78 0.98
2278 2839 1.140852 TCTACAATGCCAGCCGCTTAT 59.859 47.619 0.00 0.00 38.78 1.73
2279 2840 0.539518 TCTACAATGCCAGCCGCTTA 59.460 50.000 0.00 0.00 38.78 3.09
2280 2841 0.107017 ATCTACAATGCCAGCCGCTT 60.107 50.000 0.00 0.00 38.78 4.68
2281 2842 0.816825 CATCTACAATGCCAGCCGCT 60.817 55.000 0.00 0.00 38.78 5.52
2282 2843 1.650912 CATCTACAATGCCAGCCGC 59.349 57.895 0.00 0.00 38.31 6.53
2283 2844 0.816825 AGCATCTACAATGCCAGCCG 60.817 55.000 6.40 0.00 45.59 5.52
2284 2845 0.950116 GAGCATCTACAATGCCAGCC 59.050 55.000 6.40 0.00 45.59 4.85
2297 2858 5.287226 CCAAATTTGAGCCATTAGAGCATC 58.713 41.667 19.86 0.00 0.00 3.91
2298 2859 4.100498 CCCAAATTTGAGCCATTAGAGCAT 59.900 41.667 19.86 0.00 0.00 3.79
2299 2860 3.448301 CCCAAATTTGAGCCATTAGAGCA 59.552 43.478 19.86 0.00 0.00 4.26
2300 2861 3.181472 CCCCAAATTTGAGCCATTAGAGC 60.181 47.826 19.86 0.00 0.00 4.09
2301 2862 4.026052 ACCCCAAATTTGAGCCATTAGAG 58.974 43.478 19.86 0.00 0.00 2.43
2302 2863 4.059773 ACCCCAAATTTGAGCCATTAGA 57.940 40.909 19.86 0.00 0.00 2.10
2303 2864 4.824479 AACCCCAAATTTGAGCCATTAG 57.176 40.909 19.86 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.