Multiple sequence alignment - TraesCS6B01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G254900 chr6B 100.000 2598 0 0 984 3581 458506894 458504297 0.000000e+00 4798
1 TraesCS6B01G254900 chr6B 100.000 624 0 0 1 624 458507877 458507254 0.000000e+00 1153
2 TraesCS6B01G254900 chr6B 93.960 149 8 1 1 149 80213513 80213660 1.290000e-54 224
3 TraesCS6B01G254900 chr6B 90.506 158 14 1 1 157 664267771 664267614 1.300000e-49 207
4 TraesCS6B01G254900 chr6D 96.841 2216 58 3 984 3188 293811540 293809326 0.000000e+00 3694
5 TraesCS6B01G254900 chr6D 95.000 400 20 0 3182 3581 293808694 293808295 2.350000e-176 628
6 TraesCS6B01G254900 chr6D 90.204 490 37 6 142 624 293812048 293811563 2.350000e-176 628
7 TraesCS6B01G254900 chr6A 96.616 2216 63 3 984 3188 426953455 426955669 0.000000e+00 3666
8 TraesCS6B01G254900 chr6A 95.262 401 16 2 3182 3581 426956315 426956713 1.810000e-177 632
9 TraesCS6B01G254900 chr6A 87.949 473 43 7 154 624 426952974 426953434 2.430000e-151 545
10 TraesCS6B01G254900 chr3B 95.172 145 7 0 1 145 23441936 23442080 2.780000e-56 230
11 TraesCS6B01G254900 chr5A 94.483 145 8 0 1 145 597832174 597832030 1.290000e-54 224
12 TraesCS6B01G254900 chr3D 93.960 149 8 1 4 151 355704256 355704108 1.290000e-54 224
13 TraesCS6B01G254900 chr5D 93.793 145 9 0 1 145 42063479 42063623 6.020000e-53 219
14 TraesCS6B01G254900 chr2D 93.793 145 9 0 1 145 357894950 357895094 6.020000e-53 219
15 TraesCS6B01G254900 chr4A 92.105 152 12 0 1 152 614570535 614570384 7.790000e-52 215
16 TraesCS6B01G254900 chr3A 90.968 155 13 1 1 154 741161925 741162079 1.300000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G254900 chr6B 458504297 458507877 3580 True 2975.500000 4798 100.000000 1 3581 2 chr6B.!!$R2 3580
1 TraesCS6B01G254900 chr6D 293808295 293812048 3753 True 1650.000000 3694 94.015000 142 3581 3 chr6D.!!$R1 3439
2 TraesCS6B01G254900 chr6A 426952974 426956713 3739 False 1614.333333 3666 93.275667 154 3581 3 chr6A.!!$F1 3427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 575 0.918983 CCCATGGGTGTCATACAGGT 59.081 55.0 23.93 0.0 34.12 4.00 F
1356 1365 0.322816 ACCAGTTCGTCTACCCGCTA 60.323 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1563 1.741770 CCTTGTGTAGCCGGACAGC 60.742 63.158 5.05 0.0 0.00 4.40 R
2823 2832 0.912486 ACCTCTGGCATGGAGTAACC 59.088 55.000 12.69 0.0 39.54 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 6.304356 CTTTGATCAAAGCTAATATGCGGA 57.696 37.500 29.90 1.29 40.94 5.54
123 124 5.673337 TTGATCAAAGCTAATATGCGGAC 57.327 39.130 5.45 0.00 38.13 4.79
124 125 4.960938 TGATCAAAGCTAATATGCGGACT 58.039 39.130 0.00 0.00 38.13 3.85
125 126 6.096673 TGATCAAAGCTAATATGCGGACTA 57.903 37.500 0.00 0.00 38.13 2.59
126 127 6.521162 TGATCAAAGCTAATATGCGGACTAA 58.479 36.000 0.00 0.00 38.13 2.24
127 128 6.989759 TGATCAAAGCTAATATGCGGACTAAA 59.010 34.615 0.00 0.00 38.13 1.85
128 129 7.661437 TGATCAAAGCTAATATGCGGACTAAAT 59.339 33.333 0.00 0.00 38.13 1.40
129 130 9.151471 GATCAAAGCTAATATGCGGACTAAATA 57.849 33.333 0.00 0.00 38.13 1.40
130 131 8.896320 TCAAAGCTAATATGCGGACTAAATAA 57.104 30.769 0.00 0.00 38.13 1.40
131 132 9.332502 TCAAAGCTAATATGCGGACTAAATAAA 57.667 29.630 0.00 0.00 38.13 1.40
132 133 9.944663 CAAAGCTAATATGCGGACTAAATAAAA 57.055 29.630 0.00 0.00 38.13 1.52
134 135 9.946165 AAGCTAATATGCGGACTAAATAAAAAC 57.054 29.630 0.00 0.00 38.13 2.43
135 136 9.116067 AGCTAATATGCGGACTAAATAAAAACA 57.884 29.630 0.00 0.00 38.13 2.83
136 137 9.382244 GCTAATATGCGGACTAAATAAAAACAG 57.618 33.333 0.00 0.00 0.00 3.16
139 140 5.873179 TGCGGACTAAATAAAAACAGAGG 57.127 39.130 0.00 0.00 0.00 3.69
140 141 4.698304 TGCGGACTAAATAAAAACAGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
141 142 4.939439 GCGGACTAAATAAAAACAGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
142 143 5.064834 GCGGACTAAATAAAAACAGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
143 144 6.171213 CGGACTAAATAAAAACAGAGGGAGT 58.829 40.000 0.00 0.00 0.00 3.85
144 145 7.325694 CGGACTAAATAAAAACAGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
145 146 7.277319 CGGACTAAATAAAAACAGAGGGAGTAC 59.723 40.741 0.00 0.00 0.00 2.73
146 147 8.098912 GGACTAAATAAAAACAGAGGGAGTACA 58.901 37.037 0.00 0.00 0.00 2.90
147 148 9.498176 GACTAAATAAAAACAGAGGGAGTACAA 57.502 33.333 0.00 0.00 0.00 2.41
148 149 9.856162 ACTAAATAAAAACAGAGGGAGTACAAA 57.144 29.630 0.00 0.00 0.00 2.83
151 152 9.981114 AAATAAAAACAGAGGGAGTACAAATTG 57.019 29.630 0.00 0.00 0.00 2.32
152 153 5.453567 AAAACAGAGGGAGTACAAATTGC 57.546 39.130 0.00 0.00 0.00 3.56
333 336 8.845227 TGATATGCCGTGAAATTTTATGTATGT 58.155 29.630 0.00 0.00 0.00 2.29
340 343 9.702726 CCGTGAAATTTTATGTATGTACTGAAG 57.297 33.333 0.00 0.00 0.00 3.02
523 531 1.523758 GCCGACATGTCCAGACTTTT 58.476 50.000 20.03 0.00 0.00 2.27
556 564 1.603455 CTGTTTGACGCCCATGGGT 60.603 57.895 31.58 13.70 40.88 4.51
567 575 0.918983 CCCATGGGTGTCATACAGGT 59.081 55.000 23.93 0.00 34.12 4.00
612 620 3.643792 AGCTCCTGTCTGTGTAAAACTCT 59.356 43.478 0.00 0.00 0.00 3.24
1099 1108 2.611800 AGCTCCATGCCCACTCCA 60.612 61.111 0.00 0.00 44.23 3.86
1356 1365 0.322816 ACCAGTTCGTCTACCCGCTA 60.323 55.000 0.00 0.00 0.00 4.26
1447 1456 0.724549 GTTCCACGCGCATGATGTTA 59.275 50.000 4.35 0.00 0.00 2.41
1554 1563 4.803426 GTCTCCTGGACCGCGCTG 62.803 72.222 5.56 0.00 38.93 5.18
1641 1650 2.690778 GGATGTGGCTGCGTGGAAC 61.691 63.158 0.00 0.00 0.00 3.62
2019 2028 2.105128 GGTGAGATGAGGGACGCG 59.895 66.667 3.53 3.53 0.00 6.01
2139 2148 1.865970 GATGAGCTGAGAATTGAGCCG 59.134 52.381 0.00 0.00 35.69 5.52
2499 2508 6.546395 CAAGACACATATGTTTTACTCTGGC 58.454 40.000 5.37 0.00 39.95 4.85
2556 2565 3.679389 CACTCTTGTGGAATTAGTGGCT 58.321 45.455 0.00 0.00 40.33 4.75
2571 2580 3.233507 AGTGGCTTCAATGGAAATGTGT 58.766 40.909 0.00 0.00 31.35 3.72
2584 2593 9.439500 CAATGGAAATGTGTCAGGATTAATTTT 57.561 29.630 0.00 0.00 0.00 1.82
2603 2612 4.939509 TTTTTATAGACGCAACAGGAGC 57.060 40.909 0.00 0.00 0.00 4.70
2622 2631 8.165239 CAGGAGCTCTGCCTATATAGTATTAG 57.835 42.308 14.64 2.81 36.60 1.73
2672 2681 5.105756 CCAAAATAGAAGAAAAGCCCGTGAT 60.106 40.000 0.00 0.00 0.00 3.06
2685 2694 2.426738 GCCCGTGATGATTGATTTGGAA 59.573 45.455 0.00 0.00 0.00 3.53
2714 2723 9.878599 ATTGATAGTTTTAGTTTGAAAGTCGTG 57.121 29.630 0.00 0.00 0.00 4.35
2716 2725 8.761497 TGATAGTTTTAGTTTGAAAGTCGTGAG 58.239 33.333 0.00 0.00 0.00 3.51
2752 2761 5.784578 AGTGAAGTGGGGTAAATTGAAAC 57.215 39.130 0.00 0.00 0.00 2.78
2781 2790 4.284746 ACCTAGGCTGATTAGGAGTTATGC 59.715 45.833 9.30 0.00 40.12 3.14
2788 2797 4.645535 TGATTAGGAGTTATGCTGGATGC 58.354 43.478 0.00 0.00 43.25 3.91
2823 2832 0.753262 CCCTCGAACCCCACTATCAG 59.247 60.000 0.00 0.00 0.00 2.90
2859 2868 5.241949 CCAGAGGTAGTACTTATGCCAGTAG 59.758 48.000 0.00 0.00 29.53 2.57
2878 2887 6.251655 AGTAGTGTACTGTACTTGTGTAGC 57.748 41.667 17.98 2.38 37.69 3.58
2884 2893 2.626743 ACTGTACTTGTGTAGCGGACTT 59.373 45.455 0.00 0.00 0.00 3.01
3045 3064 0.400213 GTCCCACATTCAGTCCCACA 59.600 55.000 0.00 0.00 0.00 4.17
3109 3128 7.323420 TGATTAGATCGATGTTCTGTGTTTCT 58.677 34.615 0.54 0.00 0.00 2.52
3171 3190 0.242017 GCATTGTGACTGGTGGAAGC 59.758 55.000 0.00 0.00 0.00 3.86
3176 3195 0.391793 GTGACTGGTGGAAGCTAGCC 60.392 60.000 12.13 0.00 33.76 3.93
3228 3899 4.610945 GTCAAACAGAAATTGACCACCTG 58.389 43.478 7.92 0.00 46.94 4.00
3251 3922 4.974645 ATGGTGTAGAAACTTGTCCTCA 57.025 40.909 0.00 0.00 0.00 3.86
3271 3942 9.255304 GTCCTCAATAGAATACTCACTCATTTC 57.745 37.037 0.00 0.00 0.00 2.17
3306 3977 6.909550 TGGTTTGCCACTTTATTAAGATGT 57.090 33.333 0.00 0.00 40.46 3.06
3345 4016 8.073467 TCATATAACCTACACTGTGATGTTCA 57.927 34.615 15.86 6.65 33.85 3.18
3379 4050 8.602424 TGTTCTCCAAACTTTTCTAGGATGATA 58.398 33.333 0.00 0.00 0.00 2.15
3386 4057 9.658799 CAAACTTTTCTAGGATGATAACTCAGA 57.341 33.333 0.00 0.00 34.12 3.27
3407 4078 9.605275 CTCAGATGATTTAGTGAAAACAGGATA 57.395 33.333 0.00 0.00 31.67 2.59
3439 4110 5.297776 GGATCTCATGAGTATGTTTGGGTTG 59.702 44.000 21.92 0.00 35.73 3.77
3470 4141 1.068610 TCAAGCAAGCCGCACATTTAC 60.069 47.619 0.00 0.00 46.13 2.01
3481 4152 3.188254 CCGCACATTTACAATCAGTCACA 59.812 43.478 0.00 0.00 0.00 3.58
3528 4199 8.495148 GTGGTTTTGGAAATATACTGCAAAAAG 58.505 33.333 14.65 0.00 43.03 2.27
3535 4206 8.250332 TGGAAATATACTGCAAAAAGGTGATTC 58.750 33.333 0.00 0.00 0.00 2.52
3556 4227 8.596293 TGATTCCATGCTGAGTATATCACATAA 58.404 33.333 0.00 0.00 32.14 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 7.926018 AGCCAAACTTTATAAACTTTGACCAAG 59.074 33.333 21.97 11.91 38.64 3.61
75 76 7.787028 AGCCAAACTTTATAAACTTTGACCAA 58.213 30.769 21.97 0.00 0.00 3.67
76 77 7.354751 AGCCAAACTTTATAAACTTTGACCA 57.645 32.000 21.97 0.00 0.00 4.02
77 78 8.657074 AAAGCCAAACTTTATAAACTTTGACC 57.343 30.769 21.97 15.50 46.95 4.02
100 101 5.822519 AGTCCGCATATTAGCTTTGATCAAA 59.177 36.000 19.45 19.45 0.00 2.69
101 102 5.368145 AGTCCGCATATTAGCTTTGATCAA 58.632 37.500 3.38 3.38 0.00 2.57
102 103 4.960938 AGTCCGCATATTAGCTTTGATCA 58.039 39.130 0.00 0.00 0.00 2.92
103 104 7.421530 TTTAGTCCGCATATTAGCTTTGATC 57.578 36.000 0.00 0.00 0.00 2.92
104 105 7.986085 ATTTAGTCCGCATATTAGCTTTGAT 57.014 32.000 0.00 0.00 0.00 2.57
105 106 8.896320 TTATTTAGTCCGCATATTAGCTTTGA 57.104 30.769 0.00 0.00 0.00 2.69
106 107 9.944663 TTTTATTTAGTCCGCATATTAGCTTTG 57.055 29.630 0.00 0.00 0.00 2.77
108 109 9.946165 GTTTTTATTTAGTCCGCATATTAGCTT 57.054 29.630 0.00 0.00 0.00 3.74
109 110 9.116067 TGTTTTTATTTAGTCCGCATATTAGCT 57.884 29.630 0.00 0.00 0.00 3.32
110 111 9.382244 CTGTTTTTATTTAGTCCGCATATTAGC 57.618 33.333 0.00 0.00 0.00 3.09
113 114 8.621286 CCTCTGTTTTTATTTAGTCCGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
114 115 7.228706 CCCTCTGTTTTTATTTAGTCCGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
115 116 6.540914 CCCTCTGTTTTTATTTAGTCCGCATA 59.459 38.462 0.00 0.00 0.00 3.14
116 117 5.357032 CCCTCTGTTTTTATTTAGTCCGCAT 59.643 40.000 0.00 0.00 0.00 4.73
117 118 4.698304 CCCTCTGTTTTTATTTAGTCCGCA 59.302 41.667 0.00 0.00 0.00 5.69
118 119 4.939439 TCCCTCTGTTTTTATTTAGTCCGC 59.061 41.667 0.00 0.00 0.00 5.54
119 120 6.171213 ACTCCCTCTGTTTTTATTTAGTCCG 58.829 40.000 0.00 0.00 0.00 4.79
120 121 8.098912 TGTACTCCCTCTGTTTTTATTTAGTCC 58.901 37.037 0.00 0.00 0.00 3.85
121 122 9.498176 TTGTACTCCCTCTGTTTTTATTTAGTC 57.502 33.333 0.00 0.00 0.00 2.59
122 123 9.856162 TTTGTACTCCCTCTGTTTTTATTTAGT 57.144 29.630 0.00 0.00 0.00 2.24
125 126 9.981114 CAATTTGTACTCCCTCTGTTTTTATTT 57.019 29.630 0.00 0.00 0.00 1.40
126 127 8.088365 GCAATTTGTACTCCCTCTGTTTTTATT 58.912 33.333 0.00 0.00 0.00 1.40
127 128 7.232534 TGCAATTTGTACTCCCTCTGTTTTTAT 59.767 33.333 0.00 0.00 0.00 1.40
128 129 6.547880 TGCAATTTGTACTCCCTCTGTTTTTA 59.452 34.615 0.00 0.00 0.00 1.52
129 130 5.362430 TGCAATTTGTACTCCCTCTGTTTTT 59.638 36.000 0.00 0.00 0.00 1.94
130 131 4.892934 TGCAATTTGTACTCCCTCTGTTTT 59.107 37.500 0.00 0.00 0.00 2.43
131 132 4.278419 GTGCAATTTGTACTCCCTCTGTTT 59.722 41.667 10.00 0.00 30.04 2.83
132 133 3.821033 GTGCAATTTGTACTCCCTCTGTT 59.179 43.478 10.00 0.00 30.04 3.16
133 134 3.073062 AGTGCAATTTGTACTCCCTCTGT 59.927 43.478 13.56 0.00 39.05 3.41
134 135 3.679389 AGTGCAATTTGTACTCCCTCTG 58.321 45.455 13.56 0.00 39.05 3.35
135 136 4.373156 AAGTGCAATTTGTACTCCCTCT 57.627 40.909 18.59 2.32 42.47 3.69
136 137 5.453567 AAAAGTGCAATTTGTACTCCCTC 57.546 39.130 18.59 0.00 42.47 4.30
137 138 5.869649 AAAAAGTGCAATTTGTACTCCCT 57.130 34.783 18.59 3.00 42.47 4.20
300 302 8.994429 AAAATTTCACGGCATATCAAAATGTA 57.006 26.923 0.00 0.00 0.00 2.29
434 437 5.635700 CAGTTTTTCTCCAAACAAAACCGAA 59.364 36.000 0.00 0.00 40.00 4.30
471 474 0.232303 CGCGAGCGTTTTTCTGAAGT 59.768 50.000 0.00 0.00 34.35 3.01
472 475 2.973674 CGCGAGCGTTTTTCTGAAG 58.026 52.632 0.00 0.00 34.35 3.02
507 515 2.673368 CGCCTAAAAGTCTGGACATGTC 59.327 50.000 17.91 17.91 0.00 3.06
509 517 2.699954 ACGCCTAAAAGTCTGGACATG 58.300 47.619 3.51 0.00 0.00 3.21
513 521 1.206371 GGCTACGCCTAAAAGTCTGGA 59.794 52.381 0.00 0.00 46.69 3.86
556 564 1.816835 GACGAGACCACCTGTATGACA 59.183 52.381 0.00 0.00 0.00 3.58
567 575 3.970721 TCGCTTACGACGAGACCA 58.029 55.556 0.00 0.00 45.12 4.02
1447 1456 3.201290 CATCAAGCAGCGAAGTCCTTAT 58.799 45.455 0.00 0.00 0.00 1.73
1507 1516 3.546724 TCTCGGTCAAACCATCAAACAA 58.453 40.909 0.00 0.00 38.47 2.83
1554 1563 1.741770 CCTTGTGTAGCCGGACAGC 60.742 63.158 5.05 0.00 0.00 4.40
2139 2148 3.825328 ACACCCATAATGCTCAATCTCC 58.175 45.455 0.00 0.00 0.00 3.71
2214 2223 8.548025 TCATCTGGTTGGACTTTCATATCTTTA 58.452 33.333 0.00 0.00 0.00 1.85
2484 2493 3.853831 TCGTCGCCAGAGTAAAACATA 57.146 42.857 0.00 0.00 0.00 2.29
2556 2565 7.773489 TTAATCCTGACACATTTCCATTGAA 57.227 32.000 0.00 0.00 0.00 2.69
2584 2593 3.447586 AGAGCTCCTGTTGCGTCTATAAA 59.552 43.478 10.93 0.00 35.28 1.40
2603 2612 9.914834 ACTTCTCCTAATACTATATAGGCAGAG 57.085 37.037 14.25 10.23 38.86 3.35
2622 2631 4.402793 TCAGCCTGTAATGTCTACTTCTCC 59.597 45.833 0.00 0.00 0.00 3.71
2650 2659 5.710099 TCATCACGGGCTTTTCTTCTATTTT 59.290 36.000 0.00 0.00 0.00 1.82
2713 2722 5.185249 ACTTCACTTACGGAATAGAAGCTCA 59.815 40.000 17.30 0.00 36.77 4.26
2714 2723 5.517054 CACTTCACTTACGGAATAGAAGCTC 59.483 44.000 17.30 0.00 36.77 4.09
2716 2725 4.567159 CCACTTCACTTACGGAATAGAAGC 59.433 45.833 17.30 0.00 36.77 3.86
2752 2761 5.104735 ACTCCTAATCAGCCTAGGTCAAAAG 60.105 44.000 11.31 1.71 37.72 2.27
2781 2790 1.471287 CACCTTCATGTGTGCATCCAG 59.529 52.381 0.00 0.00 31.99 3.86
2823 2832 0.912486 ACCTCTGGCATGGAGTAACC 59.088 55.000 12.69 0.00 39.54 2.85
2859 2868 3.058016 TCCGCTACACAAGTACAGTACAC 60.058 47.826 13.37 0.00 0.00 2.90
2872 2881 1.636988 AACGCATAAGTCCGCTACAC 58.363 50.000 0.00 0.00 0.00 2.90
2878 2887 6.764877 ATGAAATAGTAACGCATAAGTCCG 57.235 37.500 0.00 0.00 0.00 4.79
3006 3015 2.384203 GCTAGCAGCACTAAACCGG 58.616 57.895 10.63 0.00 41.89 5.28
3045 3064 6.567602 AGACAAAAGATAGGGAAGCTACAT 57.432 37.500 0.00 0.00 0.00 2.29
3109 3128 4.100344 TCAGGCAATAGTCGCTAACCAATA 59.900 41.667 0.00 0.00 0.00 1.90
3228 3899 5.790593 TGAGGACAAGTTTCTACACCATAC 58.209 41.667 0.00 0.00 0.00 2.39
3251 3922 6.621514 AGGGGGAAATGAGTGAGTATTCTATT 59.378 38.462 0.00 0.00 0.00 1.73
3271 3942 0.969149 GCAAACCAAGAAAGAGGGGG 59.031 55.000 0.00 0.00 0.00 5.40
3345 4016 7.105588 AGAAAAGTTTGGAGAACAAGCAAATT 58.894 30.769 0.00 0.00 42.11 1.82
3379 4050 7.939039 TCCTGTTTTCACTAAATCATCTGAGTT 59.061 33.333 0.00 0.00 36.28 3.01
3407 4078 9.821240 AAACATACTCATGAGATCCTATAGTCT 57.179 33.333 29.27 4.55 35.96 3.24
3439 4110 1.843992 CTTGCTTGAACAGTTGCACC 58.156 50.000 0.00 0.00 35.01 5.01
3470 4141 7.921786 TTAGAAAGGGTTATGTGACTGATTG 57.078 36.000 0.00 0.00 0.00 2.67
3481 4152 5.422012 CCACCAATGCTTTAGAAAGGGTTAT 59.578 40.000 4.27 0.00 36.53 1.89
3528 4199 5.641209 GTGATATACTCAGCATGGAATCACC 59.359 44.000 0.00 0.00 37.22 4.02
3535 4206 7.544915 CAGTCTTATGTGATATACTCAGCATGG 59.455 40.741 0.00 0.00 36.16 3.66
3556 4227 3.498774 ACCATGCTTTGAGAACAGTCT 57.501 42.857 0.00 0.00 36.55 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.