Multiple sequence alignment - TraesCS6B01G254800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G254800 chr6B 100.000 3512 0 0 1 3512 458485142 458488653 0.000000e+00 6486
1 TraesCS6B01G254800 chr6D 94.908 2553 73 24 240 2783 293801231 293803735 0.000000e+00 3941
2 TraesCS6B01G254800 chr6D 88.608 237 15 8 1 227 293734829 293735063 9.600000e-71 278
3 TraesCS6B01G254800 chr6A 97.409 1814 34 10 747 2552 426967741 426965933 0.000000e+00 3077
4 TraesCS6B01G254800 chr6A 83.079 656 38 26 1 637 427052456 427051855 2.400000e-146 529
5 TraesCS6B01G254800 chr6A 90.722 194 11 4 2566 2757 426964055 426963867 5.820000e-63 252
6 TraesCS6B01G254800 chr2D 88.324 1396 156 7 1005 2398 468856181 468857571 0.000000e+00 1668
7 TraesCS6B01G254800 chr2A 88.109 1396 159 7 1005 2398 608871064 608872454 0.000000e+00 1652
8 TraesCS6B01G254800 chr2B 88.037 1396 160 7 1005 2398 547057079 547058469 0.000000e+00 1646


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G254800 chr6B 458485142 458488653 3511 False 6486.0 6486 100.0000 1 3512 1 chr6B.!!$F1 3511
1 TraesCS6B01G254800 chr6D 293801231 293803735 2504 False 3941.0 3941 94.9080 240 2783 1 chr6D.!!$F2 2543
2 TraesCS6B01G254800 chr6A 426963867 426967741 3874 True 1664.5 3077 94.0655 747 2757 2 chr6A.!!$R2 2010
3 TraesCS6B01G254800 chr6A 427051855 427052456 601 True 529.0 529 83.0790 1 637 1 chr6A.!!$R1 636
4 TraesCS6B01G254800 chr2D 468856181 468857571 1390 False 1668.0 1668 88.3240 1005 2398 1 chr2D.!!$F1 1393
5 TraesCS6B01G254800 chr2A 608871064 608872454 1390 False 1652.0 1652 88.1090 1005 2398 1 chr2A.!!$F1 1393
6 TraesCS6B01G254800 chr2B 547057079 547058469 1390 False 1646.0 1646 88.0370 1005 2398 1 chr2B.!!$F1 1393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 769 0.034756 CATCAACCACCACGAGTCCA 59.965 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2554 4460 0.04087 TTGTGCGTGCAAACATACCG 60.041 50.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.929807 AGGGAACTTTGCTGGTGG 57.070 55.556 0.00 0.00 37.44 4.61
32 33 3.691609 GGAACTTTGCTGGTGGAGATTAG 59.308 47.826 0.00 0.00 0.00 1.73
33 34 4.565652 GGAACTTTGCTGGTGGAGATTAGA 60.566 45.833 0.00 0.00 0.00 2.10
34 35 4.640771 ACTTTGCTGGTGGAGATTAGAA 57.359 40.909 0.00 0.00 0.00 2.10
35 36 4.985538 ACTTTGCTGGTGGAGATTAGAAA 58.014 39.130 0.00 0.00 0.00 2.52
47 48 9.374838 GGTGGAGATTAGAAAAGTTTACGATTA 57.625 33.333 0.00 0.00 0.00 1.75
77 79 8.129496 TCAAGAAAGGTTTACCAGAAAGTTTT 57.871 30.769 1.13 0.00 38.89 2.43
123 126 1.339610 TGGACGCCTCCATTTGTTTTG 59.660 47.619 0.00 0.00 42.15 2.44
201 214 2.082366 GCCGCGATGTGTTTGCTTG 61.082 57.895 8.23 0.00 31.94 4.01
202 215 1.282570 CCGCGATGTGTTTGCTTGT 59.717 52.632 8.23 0.00 31.94 3.16
203 216 0.515127 CCGCGATGTGTTTGCTTGTA 59.485 50.000 8.23 0.00 31.94 2.41
204 217 1.464023 CCGCGATGTGTTTGCTTGTAG 60.464 52.381 8.23 0.00 31.94 2.74
220 233 3.899052 TGTAGTACCTTTTGGGATCCG 57.101 47.619 5.45 0.00 46.08 4.18
278 291 1.080230 CACACGGTCTCTCAGCTGG 60.080 63.158 15.13 4.77 0.00 4.85
300 313 1.812571 CTGCTGCCTAAACAAATCGGT 59.187 47.619 0.00 0.00 0.00 4.69
302 315 1.539827 GCTGCCTAAACAAATCGGTGT 59.460 47.619 0.00 0.00 0.00 4.16
364 382 1.406539 GCTGATAATTGTGGCACCCTG 59.593 52.381 16.26 3.07 0.00 4.45
483 503 2.765807 AGGACGGCAGATCAGGGG 60.766 66.667 0.00 0.00 0.00 4.79
493 513 1.132913 CAGATCAGGGGAGATCAGGGA 60.133 57.143 6.70 0.00 45.39 4.20
507 527 2.033448 GGGATTCACCGGTGCACA 59.967 61.111 30.25 16.13 40.11 4.57
539 559 3.386768 AGCACGTATCAACTGAACAGT 57.613 42.857 1.32 1.32 44.94 3.55
544 564 5.168569 CACGTATCAACTGAACAGTACCAT 58.831 41.667 7.90 3.82 41.58 3.55
549 569 5.241403 TCAACTGAACAGTACCATGGATT 57.759 39.130 21.47 0.00 41.58 3.01
557 577 7.345691 TGAACAGTACCATGGATTTGACATAT 58.654 34.615 21.47 0.00 0.00 1.78
567 587 6.043327 TGGATTTGACATATAAAAGCGACG 57.957 37.500 0.00 0.00 0.00 5.12
600 621 0.924090 CAAGTCGATACAAGCTCCGC 59.076 55.000 0.00 0.00 0.00 5.54
612 633 0.958822 AGCTCCGCGTTTTCCATTTT 59.041 45.000 4.92 0.00 0.00 1.82
653 674 8.682710 ACAAACACAATTGCTATTATACGGATT 58.317 29.630 5.05 0.00 33.52 3.01
685 706 2.280628 CCAAATCGCTACTCAGTTCCC 58.719 52.381 0.00 0.00 0.00 3.97
701 722 8.877195 ACTCAGTTCCCTACTTTATTCAAGTTA 58.123 33.333 0.00 0.00 43.89 2.24
702 723 9.892130 CTCAGTTCCCTACTTTATTCAAGTTAT 57.108 33.333 0.00 0.00 43.89 1.89
741 762 3.820467 TCATCAGTTTCATCAACCACCAC 59.180 43.478 0.00 0.00 35.77 4.16
745 766 2.158813 AGTTTCATCAACCACCACGAGT 60.159 45.455 0.00 0.00 35.77 4.18
746 767 2.163818 TTCATCAACCACCACGAGTC 57.836 50.000 0.00 0.00 0.00 3.36
747 768 0.320374 TCATCAACCACCACGAGTCC 59.680 55.000 0.00 0.00 0.00 3.85
748 769 0.034756 CATCAACCACCACGAGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
749 770 0.034896 ATCAACCACCACGAGTCCAC 59.965 55.000 0.00 0.00 0.00 4.02
750 771 1.954146 CAACCACCACGAGTCCACG 60.954 63.158 0.00 0.00 39.31 4.94
751 772 2.129146 AACCACCACGAGTCCACGA 61.129 57.895 0.00 0.00 37.03 4.35
752 773 1.678598 AACCACCACGAGTCCACGAA 61.679 55.000 0.00 0.00 37.03 3.85
753 774 1.663702 CCACCACGAGTCCACGAAC 60.664 63.158 0.00 0.00 37.03 3.95
754 775 1.066752 CACCACGAGTCCACGAACA 59.933 57.895 0.00 0.00 37.03 3.18
755 776 1.066918 ACCACGAGTCCACGAACAC 59.933 57.895 0.00 0.00 37.03 3.32
802 825 0.389296 CCCACACGTCATGCTCGTAA 60.389 55.000 13.50 0.00 39.55 3.18
916 939 3.664025 TTGCACCTCCATCTCGCGG 62.664 63.158 6.13 0.00 0.00 6.46
942 966 1.552337 CCTATCAGACACTGCACCTGT 59.448 52.381 0.00 0.00 0.00 4.00
969 993 3.871485 CTCCTTGAGCAGCAGAGTATTT 58.129 45.455 0.00 0.00 0.00 1.40
1095 1119 3.598715 TTCGCGGACACCACGACT 61.599 61.111 6.13 0.00 35.20 4.18
1602 1626 2.199652 CGGGGTTGTGCACATGGTT 61.200 57.895 22.39 0.00 0.00 3.67
2248 2272 1.004560 CACGTGGTGCTGATCCTGT 60.005 57.895 7.95 0.00 0.00 4.00
2519 2543 3.117046 GCAGCTCGGTCTAGTGATTTAC 58.883 50.000 0.00 0.00 0.00 2.01
2539 2567 8.792831 ATTTACACTCTAATAACGGATACACG 57.207 34.615 0.00 0.00 40.31 4.49
2552 4458 5.284079 ACGGATACACGTATTTCATACACC 58.716 41.667 0.00 0.00 46.58 4.16
2553 4459 5.068198 ACGGATACACGTATTTCATACACCT 59.932 40.000 0.00 0.00 46.58 4.00
2554 4460 5.628193 CGGATACACGTATTTCATACACCTC 59.372 44.000 0.00 0.00 35.48 3.85
2555 4461 5.628193 GGATACACGTATTTCATACACCTCG 59.372 44.000 0.00 0.00 35.48 4.63
2556 4462 3.777478 ACACGTATTTCATACACCTCGG 58.223 45.455 0.00 0.00 35.48 4.63
2557 4463 3.194116 ACACGTATTTCATACACCTCGGT 59.806 43.478 0.00 0.00 35.48 4.69
2558 4464 4.398988 ACACGTATTTCATACACCTCGGTA 59.601 41.667 0.00 0.00 35.48 4.02
2559 4465 5.068198 ACACGTATTTCATACACCTCGGTAT 59.932 40.000 0.00 0.00 35.48 2.73
2561 4467 5.068198 ACGTATTTCATACACCTCGGTATGT 59.932 40.000 11.71 1.62 46.78 2.29
2562 4468 5.981315 CGTATTTCATACACCTCGGTATGTT 59.019 40.000 11.71 3.59 46.78 2.71
2563 4469 6.477688 CGTATTTCATACACCTCGGTATGTTT 59.522 38.462 11.71 3.33 46.78 2.83
2564 4470 6.677781 ATTTCATACACCTCGGTATGTTTG 57.322 37.500 11.71 4.48 46.78 2.93
2565 4471 3.527533 TCATACACCTCGGTATGTTTGC 58.472 45.455 11.71 0.00 46.78 3.68
2610 4516 0.179200 GCAACGCCTCGGTATGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
2612 4518 0.321298 AACGCCTCGGTATGTTTGCT 60.321 50.000 0.00 0.00 0.00 3.91
2619 4525 4.155280 GCCTCGGTATGTTTGCTCTTTTTA 59.845 41.667 0.00 0.00 0.00 1.52
2699 4606 6.594159 GTGATTGTATAATAAGATCCACGGGG 59.406 42.308 0.00 0.00 0.00 5.73
2745 4652 2.124903 GTGTGTATAAGCTATGCGCGT 58.875 47.619 8.43 7.55 45.59 6.01
2760 4667 1.275657 GCGTGTGTGTGGAACGAAG 59.724 57.895 0.00 0.00 42.39 3.79
2783 4690 3.943381 GGACAATGAGAATGAGACATGCA 59.057 43.478 0.00 0.00 0.00 3.96
2784 4691 4.201891 GGACAATGAGAATGAGACATGCAC 60.202 45.833 0.00 0.00 0.00 4.57
2785 4692 4.586884 ACAATGAGAATGAGACATGCACT 58.413 39.130 0.00 0.00 0.00 4.40
2786 4693 4.634883 ACAATGAGAATGAGACATGCACTC 59.365 41.667 11.91 11.91 35.26 3.51
2787 4694 3.257469 TGAGAATGAGACATGCACTCC 57.743 47.619 14.94 3.68 33.95 3.85
2788 4695 2.093288 TGAGAATGAGACATGCACTCCC 60.093 50.000 14.94 7.07 33.95 4.30
2789 4696 1.211457 AGAATGAGACATGCACTCCCC 59.789 52.381 14.94 6.81 33.95 4.81
2790 4697 1.211457 GAATGAGACATGCACTCCCCT 59.789 52.381 14.94 3.20 33.95 4.79
2791 4698 0.835941 ATGAGACATGCACTCCCCTC 59.164 55.000 14.94 0.00 33.95 4.30
2792 4699 1.267574 TGAGACATGCACTCCCCTCC 61.268 60.000 14.94 0.00 33.95 4.30
2793 4700 1.977293 GAGACATGCACTCCCCTCCC 61.977 65.000 8.70 0.00 0.00 4.30
2794 4701 3.017581 ACATGCACTCCCCTCCCC 61.018 66.667 0.00 0.00 0.00 4.81
2795 4702 2.693864 CATGCACTCCCCTCCCCT 60.694 66.667 0.00 0.00 0.00 4.79
2796 4703 2.367512 ATGCACTCCCCTCCCCTC 60.368 66.667 0.00 0.00 0.00 4.30
2797 4704 4.741239 TGCACTCCCCTCCCCTCC 62.741 72.222 0.00 0.00 0.00 4.30
2799 4706 3.700350 CACTCCCCTCCCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
2800 4707 3.700350 ACTCCCCTCCCCTCCCTG 61.700 72.222 0.00 0.00 0.00 4.45
2801 4708 3.700350 CTCCCCTCCCCTCCCTGT 61.700 72.222 0.00 0.00 0.00 4.00
2802 4709 3.695825 TCCCCTCCCCTCCCTGTC 61.696 72.222 0.00 0.00 0.00 3.51
2805 4712 4.787280 CCTCCCCTCCCTGTCGCT 62.787 72.222 0.00 0.00 0.00 4.93
2806 4713 3.151022 CTCCCCTCCCTGTCGCTC 61.151 72.222 0.00 0.00 0.00 5.03
2807 4714 4.779733 TCCCCTCCCTGTCGCTCC 62.780 72.222 0.00 0.00 0.00 4.70
2836 4743 4.825679 CCACCTCCCCTCCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
2837 4744 4.825679 CACCTCCCCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
2844 4751 3.711782 CCTCCCCCTCCCCTCCTT 61.712 72.222 0.00 0.00 0.00 3.36
2845 4752 2.367512 CTCCCCCTCCCCTCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
2846 4753 4.760220 TCCCCCTCCCCTCCTTGC 62.760 72.222 0.00 0.00 0.00 4.01
2851 4758 4.821589 CTCCCCTCCTTGCGCGTC 62.822 72.222 8.43 0.00 0.00 5.19
2872 4779 4.082523 CCATGGCGTCCAGTCCGT 62.083 66.667 0.00 0.00 36.75 4.69
2873 4780 2.509336 CATGGCGTCCAGTCCGTC 60.509 66.667 4.90 0.00 36.75 4.79
2874 4781 3.771160 ATGGCGTCCAGTCCGTCC 61.771 66.667 4.90 0.00 36.75 4.79
2875 4782 4.988716 TGGCGTCCAGTCCGTCCT 62.989 66.667 0.00 0.00 0.00 3.85
2876 4783 4.131088 GGCGTCCAGTCCGTCCTC 62.131 72.222 0.00 0.00 0.00 3.71
2877 4784 4.477975 GCGTCCAGTCCGTCCTCG 62.478 72.222 0.00 0.00 0.00 4.63
2902 4809 4.803426 GTCCGTCTCGCAGGGCTG 62.803 72.222 0.00 0.00 0.00 4.85
2906 4813 3.695606 GTCTCGCAGGGCTGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
2907 4814 3.695606 TCTCGCAGGGCTGGTGAC 61.696 66.667 0.00 0.00 0.00 3.67
2908 4815 4.767255 CTCGCAGGGCTGGTGACC 62.767 72.222 0.00 0.00 43.41 4.02
2936 4843 4.554036 GTCCGGCCTGGGCATCTC 62.554 72.222 21.03 3.71 44.04 2.75
2939 4846 4.247380 CGGCCTGGGCATCTCCTC 62.247 72.222 21.03 0.00 44.11 3.71
2940 4847 2.771762 GGCCTGGGCATCTCCTCT 60.772 66.667 16.34 0.00 44.11 3.69
2941 4848 2.381941 GGCCTGGGCATCTCCTCTT 61.382 63.158 16.34 0.00 44.11 2.85
2942 4849 1.153005 GCCTGGGCATCTCCTCTTG 60.153 63.158 6.75 0.00 41.49 3.02
2943 4850 1.153005 CCTGGGCATCTCCTCTTGC 60.153 63.158 0.00 0.00 38.14 4.01
2944 4851 1.633915 CCTGGGCATCTCCTCTTGCT 61.634 60.000 0.00 0.00 38.88 3.91
2945 4852 0.179051 CTGGGCATCTCCTCTTGCTC 60.179 60.000 0.00 0.00 39.85 4.26
2946 4853 1.227497 GGGCATCTCCTCTTGCTCG 60.227 63.158 0.00 0.00 38.88 5.03
2947 4854 1.227497 GGCATCTCCTCTTGCTCGG 60.227 63.158 0.00 0.00 38.88 4.63
2948 4855 1.680522 GGCATCTCCTCTTGCTCGGA 61.681 60.000 0.00 0.00 38.88 4.55
2949 4856 0.249405 GCATCTCCTCTTGCTCGGAG 60.249 60.000 0.00 0.00 46.52 4.63
2950 4857 1.110442 CATCTCCTCTTGCTCGGAGT 58.890 55.000 6.90 0.00 45.57 3.85
2951 4858 1.066908 CATCTCCTCTTGCTCGGAGTC 59.933 57.143 6.90 0.00 45.57 3.36
2952 4859 1.027255 TCTCCTCTTGCTCGGAGTCG 61.027 60.000 6.90 0.00 45.57 4.18
2953 4860 1.303398 TCCTCTTGCTCGGAGTCGT 60.303 57.895 6.90 0.00 37.69 4.34
2954 4861 1.137825 CCTCTTGCTCGGAGTCGTC 59.862 63.158 6.90 0.00 37.69 4.20
2955 4862 1.137825 CTCTTGCTCGGAGTCGTCC 59.862 63.158 6.90 0.00 39.88 4.79
2963 4870 2.806237 GGAGTCGTCCGATGGTCC 59.194 66.667 0.00 0.00 31.37 4.46
2964 4871 2.783288 GGAGTCGTCCGATGGTCCC 61.783 68.421 0.00 0.00 31.37 4.46
2965 4872 3.122250 GAGTCGTCCGATGGTCCCG 62.122 68.421 0.00 0.00 0.00 5.14
2984 4891 4.838486 CGCGCTGGAGGTCTCGTC 62.838 72.222 5.56 0.00 0.00 4.20
2985 4892 4.838486 GCGCTGGAGGTCTCGTCG 62.838 72.222 0.00 0.00 0.00 5.12
2986 4893 4.838486 CGCTGGAGGTCTCGTCGC 62.838 72.222 0.00 0.00 0.00 5.19
2987 4894 4.838486 GCTGGAGGTCTCGTCGCG 62.838 72.222 0.00 0.00 0.00 5.87
2988 4895 4.180946 CTGGAGGTCTCGTCGCGG 62.181 72.222 6.13 0.00 0.00 6.46
3065 4972 4.740822 GCTGTCCGGCCATGGGTT 62.741 66.667 15.13 0.00 0.00 4.11
3066 4973 2.035626 CTGTCCGGCCATGGGTTT 59.964 61.111 15.13 0.00 0.00 3.27
3067 4974 2.034999 TGTCCGGCCATGGGTTTC 59.965 61.111 15.13 0.00 0.00 2.78
3068 4975 3.131478 GTCCGGCCATGGGTTTCG 61.131 66.667 15.13 1.21 0.00 3.46
3069 4976 4.418328 TCCGGCCATGGGTTTCGG 62.418 66.667 15.13 9.45 41.80 4.30
3085 4992 3.661648 GGCCCAGCCCTCCAAGAA 61.662 66.667 0.00 0.00 44.06 2.52
3086 4993 2.044551 GCCCAGCCCTCCAAGAAG 60.045 66.667 0.00 0.00 0.00 2.85
3087 4994 2.911926 GCCCAGCCCTCCAAGAAGT 61.912 63.158 0.00 0.00 0.00 3.01
3088 4995 1.301293 CCCAGCCCTCCAAGAAGTC 59.699 63.158 0.00 0.00 0.00 3.01
3089 4996 1.078848 CCAGCCCTCCAAGAAGTCG 60.079 63.158 0.00 0.00 0.00 4.18
3090 4997 1.743252 CAGCCCTCCAAGAAGTCGC 60.743 63.158 0.00 0.00 0.00 5.19
3091 4998 1.915769 AGCCCTCCAAGAAGTCGCT 60.916 57.895 0.00 0.00 0.00 4.93
3092 4999 0.614979 AGCCCTCCAAGAAGTCGCTA 60.615 55.000 0.00 0.00 0.00 4.26
3093 5000 0.466124 GCCCTCCAAGAAGTCGCTAT 59.534 55.000 0.00 0.00 0.00 2.97
3094 5001 1.808133 GCCCTCCAAGAAGTCGCTATG 60.808 57.143 0.00 0.00 0.00 2.23
3095 5002 1.202580 CCCTCCAAGAAGTCGCTATGG 60.203 57.143 0.00 0.00 0.00 2.74
3096 5003 1.757118 CCTCCAAGAAGTCGCTATGGA 59.243 52.381 0.00 0.00 37.83 3.41
3098 5005 1.757118 TCCAAGAAGTCGCTATGGAGG 59.243 52.381 0.00 0.00 35.33 4.30
3099 5006 1.576356 CAAGAAGTCGCTATGGAGGC 58.424 55.000 0.00 0.00 0.00 4.70
3106 5013 4.221422 GCTATGGAGGCGGCGTCA 62.221 66.667 22.42 6.54 0.00 4.35
3107 5014 2.279517 CTATGGAGGCGGCGTCAC 60.280 66.667 22.42 7.51 0.00 3.67
3108 5015 4.201679 TATGGAGGCGGCGTCACG 62.202 66.667 22.42 0.00 0.00 4.35
3146 5053 3.400054 CTCCCTTCCCCCACCGTC 61.400 72.222 0.00 0.00 0.00 4.79
3147 5054 4.257810 TCCCTTCCCCCACCGTCA 62.258 66.667 0.00 0.00 0.00 4.35
3148 5055 3.717294 CCCTTCCCCCACCGTCAG 61.717 72.222 0.00 0.00 0.00 3.51
3149 5056 3.717294 CCTTCCCCCACCGTCAGG 61.717 72.222 0.00 0.00 45.13 3.86
3150 5057 4.410400 CTTCCCCCACCGTCAGGC 62.410 72.222 0.00 0.00 42.76 4.85
3160 5067 4.838486 CGTCAGGCGCGAGGTCTC 62.838 72.222 12.10 0.00 0.00 3.36
3161 5068 4.500116 GTCAGGCGCGAGGTCTCC 62.500 72.222 12.10 0.00 0.00 3.71
3167 5074 3.827898 CGCGAGGTCTCCCCTGAC 61.828 72.222 0.00 0.00 46.51 3.51
3168 5075 2.680352 GCGAGGTCTCCCCTGACA 60.680 66.667 0.00 0.00 46.51 3.58
3169 5076 2.060980 GCGAGGTCTCCCCTGACAT 61.061 63.158 0.00 0.00 46.51 3.06
3170 5077 1.819229 CGAGGTCTCCCCTGACATG 59.181 63.158 0.00 0.00 46.51 3.21
3171 5078 1.680522 CGAGGTCTCCCCTGACATGG 61.681 65.000 0.00 0.00 46.51 3.66
3172 5079 0.325671 GAGGTCTCCCCTGACATGGA 60.326 60.000 0.00 0.00 46.51 3.41
3173 5080 0.618968 AGGTCTCCCCTGACATGGAC 60.619 60.000 0.00 0.00 44.08 4.02
3174 5081 1.517832 GTCTCCCCTGACATGGACG 59.482 63.158 0.00 0.00 36.97 4.79
3175 5082 1.685765 TCTCCCCTGACATGGACGG 60.686 63.158 0.00 0.00 0.00 4.79
3176 5083 2.687200 TCCCCTGACATGGACGGG 60.687 66.667 11.54 11.54 36.42 5.28
3177 5084 4.489771 CCCCTGACATGGACGGGC 62.490 72.222 12.65 0.00 35.29 6.13
3178 5085 3.402681 CCCTGACATGGACGGGCT 61.403 66.667 12.65 0.00 32.89 5.19
3179 5086 2.187946 CCTGACATGGACGGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
3180 5087 2.362369 CCTGACATGGACGGGCTCT 61.362 63.158 0.00 0.00 0.00 4.09
3181 5088 1.153489 CTGACATGGACGGGCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
3182 5089 2.512515 GACATGGACGGGCTCTGC 60.513 66.667 0.00 0.00 0.00 4.26
3183 5090 3.005539 ACATGGACGGGCTCTGCT 61.006 61.111 0.00 0.00 0.00 4.24
3184 5091 2.270205 CATGGACGGGCTCTGCTT 59.730 61.111 0.00 0.00 0.00 3.91
3185 5092 1.817099 CATGGACGGGCTCTGCTTC 60.817 63.158 0.00 0.00 0.00 3.86
3186 5093 2.293318 ATGGACGGGCTCTGCTTCA 61.293 57.895 0.00 0.00 0.00 3.02
3187 5094 2.125350 GGACGGGCTCTGCTTCAG 60.125 66.667 0.00 0.00 0.00 3.02
3188 5095 2.650116 GGACGGGCTCTGCTTCAGA 61.650 63.158 0.00 0.00 38.25 3.27
3189 5096 1.519719 GACGGGCTCTGCTTCAGAT 59.480 57.895 0.00 0.00 39.92 2.90
3190 5097 0.809241 GACGGGCTCTGCTTCAGATG 60.809 60.000 0.00 0.00 39.92 2.90
3191 5098 1.220206 CGGGCTCTGCTTCAGATGT 59.780 57.895 0.00 0.00 39.92 3.06
3192 5099 0.809241 CGGGCTCTGCTTCAGATGTC 60.809 60.000 0.00 0.00 39.92 3.06
3193 5100 0.540923 GGGCTCTGCTTCAGATGTCT 59.459 55.000 0.00 0.00 39.92 3.41
3194 5101 1.473080 GGGCTCTGCTTCAGATGTCTC 60.473 57.143 0.00 0.00 39.92 3.36
3195 5102 1.473080 GGCTCTGCTTCAGATGTCTCC 60.473 57.143 0.00 0.00 39.92 3.71
3196 5103 1.802136 GCTCTGCTTCAGATGTCTCCG 60.802 57.143 0.00 0.00 39.92 4.63
3197 5104 0.820226 TCTGCTTCAGATGTCTCCGG 59.180 55.000 0.00 0.00 35.39 5.14
3198 5105 0.179089 CTGCTTCAGATGTCTCCGGG 60.179 60.000 0.00 0.00 32.44 5.73
3199 5106 0.614697 TGCTTCAGATGTCTCCGGGA 60.615 55.000 0.00 0.00 0.00 5.14
3200 5107 0.103937 GCTTCAGATGTCTCCGGGAG 59.896 60.000 18.25 18.25 0.00 4.30
3212 5119 4.996434 CGGGAGGGCCATCATCGC 62.996 72.222 20.75 11.12 36.05 4.58
3213 5120 4.650377 GGGAGGGCCATCATCGCC 62.650 72.222 20.75 7.24 46.29 5.54
3218 5125 2.592861 GGCCATCATCGCCAGGAC 60.593 66.667 0.00 0.00 46.27 3.85
3219 5126 2.507944 GCCATCATCGCCAGGACT 59.492 61.111 0.00 0.00 0.00 3.85
3220 5127 1.890979 GCCATCATCGCCAGGACTG 60.891 63.158 0.00 0.00 0.00 3.51
3221 5128 1.890979 CCATCATCGCCAGGACTGC 60.891 63.158 0.00 0.00 0.00 4.40
3222 5129 1.153309 CATCATCGCCAGGACTGCA 60.153 57.895 0.00 0.00 0.00 4.41
3223 5130 1.153289 ATCATCGCCAGGACTGCAC 60.153 57.895 0.00 0.00 0.00 4.57
3224 5131 2.599645 ATCATCGCCAGGACTGCACC 62.600 60.000 0.00 0.00 0.00 5.01
3225 5132 3.321648 ATCGCCAGGACTGCACCA 61.322 61.111 0.00 0.00 0.00 4.17
3226 5133 2.894257 ATCGCCAGGACTGCACCAA 61.894 57.895 0.00 0.00 0.00 3.67
3227 5134 3.357079 CGCCAGGACTGCACCAAC 61.357 66.667 0.00 0.00 0.00 3.77
3228 5135 3.357079 GCCAGGACTGCACCAACG 61.357 66.667 0.00 0.00 0.00 4.10
3229 5136 3.357079 CCAGGACTGCACCAACGC 61.357 66.667 0.00 0.00 0.00 4.84
3230 5137 3.357079 CAGGACTGCACCAACGCC 61.357 66.667 0.00 0.00 0.00 5.68
3231 5138 3.872603 AGGACTGCACCAACGCCA 61.873 61.111 0.00 0.00 0.00 5.69
3232 5139 2.672996 GGACTGCACCAACGCCAT 60.673 61.111 0.00 0.00 0.00 4.40
3233 5140 2.690778 GGACTGCACCAACGCCATC 61.691 63.158 0.00 0.00 0.00 3.51
3234 5141 3.027170 GACTGCACCAACGCCATCG 62.027 63.158 0.00 0.00 42.43 3.84
3244 5151 3.316821 CGCCATCGTCTGCATCAG 58.683 61.111 0.00 0.00 0.00 2.90
3245 5152 2.242572 CGCCATCGTCTGCATCAGG 61.243 63.158 0.00 0.00 31.51 3.86
3246 5153 1.153289 GCCATCGTCTGCATCAGGT 60.153 57.895 0.00 0.00 31.51 4.00
3247 5154 1.434622 GCCATCGTCTGCATCAGGTG 61.435 60.000 0.00 0.00 31.51 4.00
3258 5165 3.465990 ATCAGGTGCGGTGATGAAG 57.534 52.632 0.00 0.00 33.24 3.02
3259 5166 0.107508 ATCAGGTGCGGTGATGAAGG 60.108 55.000 0.00 0.00 33.24 3.46
3260 5167 2.045926 AGGTGCGGTGATGAAGGC 60.046 61.111 0.00 0.00 0.00 4.35
3261 5168 3.134127 GGTGCGGTGATGAAGGCC 61.134 66.667 0.00 0.00 0.00 5.19
3262 5169 2.359850 GTGCGGTGATGAAGGCCA 60.360 61.111 5.01 0.00 0.00 5.36
3263 5170 1.750399 GTGCGGTGATGAAGGCCAT 60.750 57.895 5.01 0.00 38.43 4.40
3264 5171 1.750018 TGCGGTGATGAAGGCCATG 60.750 57.895 5.01 0.00 35.17 3.66
3265 5172 2.484062 GCGGTGATGAAGGCCATGG 61.484 63.158 7.63 7.63 35.17 3.66
3266 5173 1.077501 CGGTGATGAAGGCCATGGT 60.078 57.895 14.67 0.00 35.17 3.55
3267 5174 0.680921 CGGTGATGAAGGCCATGGTT 60.681 55.000 14.67 0.00 35.17 3.67
3268 5175 1.106285 GGTGATGAAGGCCATGGTTC 58.894 55.000 14.67 10.80 35.17 3.62
3269 5176 0.734889 GTGATGAAGGCCATGGTTCG 59.265 55.000 14.67 0.00 35.17 3.95
3270 5177 0.617935 TGATGAAGGCCATGGTTCGA 59.382 50.000 14.67 2.17 35.17 3.71
3271 5178 1.303309 GATGAAGGCCATGGTTCGAG 58.697 55.000 14.67 0.00 35.17 4.04
3272 5179 0.107017 ATGAAGGCCATGGTTCGAGG 60.107 55.000 14.67 0.00 33.39 4.63
3273 5180 1.452108 GAAGGCCATGGTTCGAGGG 60.452 63.158 14.67 0.00 0.00 4.30
3274 5181 1.910580 GAAGGCCATGGTTCGAGGGA 61.911 60.000 14.67 0.00 0.00 4.20
3275 5182 2.124695 GGCCATGGTTCGAGGGAC 60.125 66.667 14.67 0.00 0.00 4.46
3277 5184 1.450312 GCCATGGTTCGAGGGACTG 60.450 63.158 14.67 0.00 41.55 3.51
3278 5185 1.983224 CCATGGTTCGAGGGACTGT 59.017 57.895 2.57 0.00 41.55 3.55
3279 5186 1.191535 CCATGGTTCGAGGGACTGTA 58.808 55.000 2.57 0.00 41.55 2.74
3280 5187 1.553248 CCATGGTTCGAGGGACTGTAA 59.447 52.381 2.57 0.00 41.55 2.41
3281 5188 2.418746 CCATGGTTCGAGGGACTGTAAG 60.419 54.545 2.57 0.00 41.55 2.34
3282 5189 0.606604 TGGTTCGAGGGACTGTAAGC 59.393 55.000 0.00 0.00 41.55 3.09
3283 5190 0.458025 GGTTCGAGGGACTGTAAGCG 60.458 60.000 0.00 0.00 41.55 4.68
3284 5191 1.077089 GTTCGAGGGACTGTAAGCGC 61.077 60.000 0.00 0.00 41.55 5.92
3285 5192 2.202756 CGAGGGACTGTAAGCGCC 60.203 66.667 2.29 0.00 41.55 6.53
3289 5196 2.813908 GGACTGTAAGCGCCCACG 60.814 66.667 2.29 1.66 44.07 4.94
3290 5197 2.260434 GACTGTAAGCGCCCACGA 59.740 61.111 2.29 0.00 42.48 4.35
3291 5198 1.373748 GACTGTAAGCGCCCACGAA 60.374 57.895 2.29 0.00 42.48 3.85
3292 5199 1.352156 GACTGTAAGCGCCCACGAAG 61.352 60.000 2.29 0.00 42.48 3.79
3293 5200 2.740714 CTGTAAGCGCCCACGAAGC 61.741 63.158 2.29 0.00 43.93 3.86
3294 5201 3.497031 GTAAGCGCCCACGAAGCC 61.497 66.667 2.29 0.00 43.93 4.35
3295 5202 4.770874 TAAGCGCCCACGAAGCCC 62.771 66.667 2.29 0.00 43.93 5.19
3305 5212 2.202623 CGAAGCCCGTCTTCCGAG 60.203 66.667 8.50 0.00 46.60 4.63
3306 5213 2.184579 GAAGCCCGTCTTCCGAGG 59.815 66.667 3.96 0.00 44.22 4.63
3307 5214 2.603776 AAGCCCGTCTTCCGAGGT 60.604 61.111 0.00 0.00 39.56 3.85
3308 5215 2.837371 GAAGCCCGTCTTCCGAGGTG 62.837 65.000 3.96 0.00 44.22 4.00
3309 5216 4.452733 GCCCGTCTTCCGAGGTGG 62.453 72.222 0.00 0.00 39.56 4.61
3337 5244 4.473520 CCTCGCCATCGCCAAGGT 62.474 66.667 0.00 0.00 32.26 3.50
3338 5245 2.892425 CTCGCCATCGCCAAGGTC 60.892 66.667 0.00 0.00 35.26 3.85
3339 5246 4.812476 TCGCCATCGCCAAGGTCG 62.812 66.667 0.00 0.00 35.26 4.79
3413 5320 4.803426 CCGTCTCGAGCTGGTGCC 62.803 72.222 7.81 0.00 40.80 5.01
3415 5322 4.803426 GTCTCGAGCTGGTGCCGG 62.803 72.222 7.81 0.00 40.80 6.13
3443 5350 4.097361 GACCCTTGGCCCCGTCTC 62.097 72.222 0.00 0.00 0.00 3.36
3447 5354 3.458163 CTTGGCCCCGTCTCGCTA 61.458 66.667 0.00 0.00 0.00 4.26
3448 5355 3.718210 CTTGGCCCCGTCTCGCTAC 62.718 68.421 0.00 0.00 0.00 3.58
3449 5356 4.753662 TGGCCCCGTCTCGCTACT 62.754 66.667 0.00 0.00 0.00 2.57
3450 5357 3.902086 GGCCCCGTCTCGCTACTC 61.902 72.222 0.00 0.00 0.00 2.59
3451 5358 3.902086 GCCCCGTCTCGCTACTCC 61.902 72.222 0.00 0.00 0.00 3.85
3452 5359 3.584052 CCCCGTCTCGCTACTCCG 61.584 72.222 0.00 0.00 0.00 4.63
3453 5360 4.253257 CCCGTCTCGCTACTCCGC 62.253 72.222 0.00 0.00 0.00 5.54
3474 5381 4.697756 CGCTTCCACCGGCTCCAA 62.698 66.667 0.00 0.00 0.00 3.53
3475 5382 2.747855 GCTTCCACCGGCTCCAAG 60.748 66.667 0.00 0.00 0.00 3.61
3476 5383 2.045926 CTTCCACCGGCTCCAAGG 60.046 66.667 0.00 0.00 0.00 3.61
3477 5384 2.852075 TTCCACCGGCTCCAAGGT 60.852 61.111 0.00 0.00 42.34 3.50
3478 5385 2.411765 CTTCCACCGGCTCCAAGGTT 62.412 60.000 0.00 0.00 39.00 3.50
3479 5386 2.672996 CCACCGGCTCCAAGGTTG 60.673 66.667 0.00 0.00 39.00 3.77
3480 5387 2.429930 CACCGGCTCCAAGGTTGA 59.570 61.111 0.00 0.00 39.00 3.18
3481 5388 1.002134 CACCGGCTCCAAGGTTGAT 60.002 57.895 0.00 0.00 39.00 2.57
3482 5389 1.002134 ACCGGCTCCAAGGTTGATG 60.002 57.895 0.00 0.00 37.49 3.07
3483 5390 1.002134 CCGGCTCCAAGGTTGATGT 60.002 57.895 0.00 0.00 0.00 3.06
3484 5391 0.609131 CCGGCTCCAAGGTTGATGTT 60.609 55.000 0.00 0.00 0.00 2.71
3485 5392 0.523072 CGGCTCCAAGGTTGATGTTG 59.477 55.000 0.00 0.00 0.00 3.33
3486 5393 0.244721 GGCTCCAAGGTTGATGTTGC 59.755 55.000 0.00 0.00 0.00 4.17
3487 5394 0.244721 GCTCCAAGGTTGATGTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
3488 5395 0.523072 CTCCAAGGTTGATGTTGCCG 59.477 55.000 0.00 0.00 0.00 5.69
3489 5396 0.109532 TCCAAGGTTGATGTTGCCGA 59.890 50.000 0.00 0.00 0.00 5.54
3490 5397 1.176527 CCAAGGTTGATGTTGCCGAT 58.823 50.000 0.00 0.00 0.00 4.18
3491 5398 1.135315 CCAAGGTTGATGTTGCCGATG 60.135 52.381 0.00 0.00 0.00 3.84
3492 5399 1.135315 CAAGGTTGATGTTGCCGATGG 60.135 52.381 0.00 0.00 0.00 3.51
3493 5400 0.327924 AGGTTGATGTTGCCGATGGA 59.672 50.000 0.00 0.00 0.00 3.41
3494 5401 0.451783 GGTTGATGTTGCCGATGGAC 59.548 55.000 0.00 0.00 0.00 4.02
3495 5402 1.164411 GTTGATGTTGCCGATGGACA 58.836 50.000 0.00 0.00 0.00 4.02
3496 5403 1.135689 GTTGATGTTGCCGATGGACAC 60.136 52.381 0.00 0.00 0.00 3.67
3497 5404 1.018752 TGATGTTGCCGATGGACACG 61.019 55.000 0.00 0.00 0.00 4.49
3498 5405 0.739462 GATGTTGCCGATGGACACGA 60.739 55.000 0.00 0.00 0.00 4.35
3499 5406 1.019278 ATGTTGCCGATGGACACGAC 61.019 55.000 0.00 0.00 0.00 4.34
3500 5407 2.047655 TTGCCGATGGACACGACC 60.048 61.111 0.00 0.00 0.00 4.79
3501 5408 2.873525 TTGCCGATGGACACGACCA 61.874 57.895 0.00 0.00 44.41 4.02
3507 5414 3.065306 TGGACACGACCATGGACC 58.935 61.111 21.47 8.83 34.77 4.46
3508 5415 2.267961 GGACACGACCATGGACCC 59.732 66.667 21.47 5.03 0.00 4.46
3509 5416 2.125673 GACACGACCATGGACCCG 60.126 66.667 21.47 19.83 0.00 5.28
3510 5417 2.920912 ACACGACCATGGACCCGT 60.921 61.111 21.47 20.48 35.46 5.28
3511 5418 2.125673 CACGACCATGGACCCGTC 60.126 66.667 21.47 3.68 32.50 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.533569 TTTCTGGTAAACCTTTCTTGAGAAAT 57.466 30.769 6.63 0.00 42.44 2.17
50 51 6.659824 ACTTTCTGGTAAACCTTTCTTGAGA 58.340 36.000 0.02 0.00 36.82 3.27
51 52 6.944234 ACTTTCTGGTAAACCTTTCTTGAG 57.056 37.500 0.02 0.00 36.82 3.02
52 53 7.712204 AAACTTTCTGGTAAACCTTTCTTGA 57.288 32.000 0.02 0.00 36.82 3.02
53 54 7.220108 CGAAAACTTTCTGGTAAACCTTTCTTG 59.780 37.037 0.02 0.00 35.07 3.02
60 62 6.800408 GCTAATCGAAAACTTTCTGGTAAACC 59.200 38.462 0.00 0.00 35.07 3.27
77 79 1.823295 GACAGGCCCAGCTAATCGA 59.177 57.895 0.00 0.00 0.00 3.59
108 111 3.130633 GGTTCACAAAACAAATGGAGGC 58.869 45.455 0.00 0.00 0.00 4.70
110 113 3.380142 CCGGTTCACAAAACAAATGGAG 58.620 45.455 0.00 0.00 0.00 3.86
189 202 6.460953 CCAAAAGGTACTACAAGCAAACACAT 60.461 38.462 0.00 0.00 38.49 3.21
201 214 2.558378 GCGGATCCCAAAAGGTACTAC 58.442 52.381 6.06 0.00 38.49 2.73
202 215 1.487558 GGCGGATCCCAAAAGGTACTA 59.512 52.381 6.06 0.00 38.49 1.82
204 217 1.093496 CGGCGGATCCCAAAAGGTAC 61.093 60.000 6.06 0.00 36.75 3.34
300 313 1.303236 CCCCACCAGCGATCAAACA 60.303 57.895 0.00 0.00 0.00 2.83
302 315 0.322456 CTTCCCCACCAGCGATCAAA 60.322 55.000 0.00 0.00 0.00 2.69
335 348 2.162208 CACAATTATCAGCAGGCGTGTT 59.838 45.455 8.40 0.00 0.00 3.32
336 349 1.739466 CACAATTATCAGCAGGCGTGT 59.261 47.619 8.40 0.00 0.00 4.49
337 350 1.064505 CCACAATTATCAGCAGGCGTG 59.935 52.381 1.01 1.01 0.00 5.34
338 351 1.382522 CCACAATTATCAGCAGGCGT 58.617 50.000 0.00 0.00 0.00 5.68
339 352 0.029834 GCCACAATTATCAGCAGGCG 59.970 55.000 0.00 0.00 0.00 5.52
340 353 1.105457 TGCCACAATTATCAGCAGGC 58.895 50.000 0.00 0.00 40.93 4.85
341 354 1.406539 GGTGCCACAATTATCAGCAGG 59.593 52.381 0.00 0.00 33.37 4.85
342 355 1.406539 GGGTGCCACAATTATCAGCAG 59.593 52.381 0.00 0.00 33.37 4.24
343 356 1.005805 AGGGTGCCACAATTATCAGCA 59.994 47.619 0.00 0.00 0.00 4.41
344 357 1.406539 CAGGGTGCCACAATTATCAGC 59.593 52.381 0.00 0.00 0.00 4.26
364 382 4.275196 AGCTTAGAAACTTTCCGGTCAAAC 59.725 41.667 0.00 0.00 0.00 2.93
445 464 4.996113 CGTATGGAACCGCAATGC 57.004 55.556 0.00 0.00 0.00 3.56
467 487 2.764128 TCCCCTGATCTGCCGTCC 60.764 66.667 0.00 0.00 0.00 4.79
483 503 1.123928 ACCGGTGAATCCCTGATCTC 58.876 55.000 6.12 0.00 0.00 2.75
493 513 0.603707 CAGTCTGTGCACCGGTGAAT 60.604 55.000 38.30 13.40 0.00 2.57
507 527 5.836821 TGATACGTGCTTATTCTCAGTCT 57.163 39.130 0.00 0.00 0.00 3.24
539 559 7.717436 TCGCTTTTATATGTCAAATCCATGGTA 59.283 33.333 12.58 0.00 0.00 3.25
544 564 5.503357 GCGTCGCTTTTATATGTCAAATCCA 60.503 40.000 10.68 0.00 0.00 3.41
549 569 4.930463 TTGCGTCGCTTTTATATGTCAA 57.070 36.364 19.50 0.00 0.00 3.18
557 577 2.809119 TCTCCATTTTGCGTCGCTTTTA 59.191 40.909 19.50 1.59 0.00 1.52
567 587 2.226437 TCGACTTGCTTCTCCATTTTGC 59.774 45.455 0.00 0.00 0.00 3.68
615 636 8.558700 AGCAATTGTGTTTGTTCATTTTATTCC 58.441 29.630 7.40 0.00 0.00 3.01
645 666 8.918202 ATTTGGTGTGTGATATTAATCCGTAT 57.082 30.769 0.00 0.00 0.00 3.06
646 667 7.170151 CGATTTGGTGTGTGATATTAATCCGTA 59.830 37.037 0.00 0.00 0.00 4.02
653 674 6.578944 AGTAGCGATTTGGTGTGTGATATTA 58.421 36.000 0.00 0.00 0.00 0.98
711 732 9.076781 TGGTTGATGAAACTGATGAAATCTAAA 57.923 29.630 0.00 0.00 38.75 1.85
712 733 8.514594 GTGGTTGATGAAACTGATGAAATCTAA 58.485 33.333 0.00 0.00 38.75 2.10
713 734 7.121168 GGTGGTTGATGAAACTGATGAAATCTA 59.879 37.037 0.00 0.00 38.75 1.98
714 735 6.071728 GGTGGTTGATGAAACTGATGAAATCT 60.072 38.462 0.00 0.00 38.75 2.40
715 736 6.095377 GGTGGTTGATGAAACTGATGAAATC 58.905 40.000 0.00 0.00 38.56 2.17
716 737 5.539574 TGGTGGTTGATGAAACTGATGAAAT 59.460 36.000 0.00 0.00 38.92 2.17
717 738 4.892345 TGGTGGTTGATGAAACTGATGAAA 59.108 37.500 0.00 0.00 38.92 2.69
718 739 4.278170 GTGGTGGTTGATGAAACTGATGAA 59.722 41.667 0.00 0.00 38.92 2.57
720 741 3.365264 CGTGGTGGTTGATGAAACTGATG 60.365 47.826 0.00 0.00 38.92 3.07
721 742 2.813754 CGTGGTGGTTGATGAAACTGAT 59.186 45.455 0.00 0.00 38.92 2.90
722 743 2.158885 TCGTGGTGGTTGATGAAACTGA 60.159 45.455 0.00 0.00 38.92 3.41
723 744 2.217750 TCGTGGTGGTTGATGAAACTG 58.782 47.619 0.00 0.00 38.92 3.16
724 745 2.158813 ACTCGTGGTGGTTGATGAAACT 60.159 45.455 0.00 0.00 38.92 2.66
741 762 1.409412 CTCTTGTGTTCGTGGACTCG 58.591 55.000 0.00 0.00 0.00 4.18
745 766 1.295792 GTTGCTCTTGTGTTCGTGGA 58.704 50.000 0.00 0.00 0.00 4.02
746 767 1.013596 TGTTGCTCTTGTGTTCGTGG 58.986 50.000 0.00 0.00 0.00 4.94
747 768 2.708514 CTTGTTGCTCTTGTGTTCGTG 58.291 47.619 0.00 0.00 0.00 4.35
748 769 1.064060 GCTTGTTGCTCTTGTGTTCGT 59.936 47.619 0.00 0.00 38.95 3.85
749 770 1.063912 TGCTTGTTGCTCTTGTGTTCG 59.936 47.619 0.00 0.00 43.37 3.95
750 771 2.849880 TGCTTGTTGCTCTTGTGTTC 57.150 45.000 0.00 0.00 43.37 3.18
751 772 2.417243 GGTTGCTTGTTGCTCTTGTGTT 60.417 45.455 0.00 0.00 43.37 3.32
752 773 1.134946 GGTTGCTTGTTGCTCTTGTGT 59.865 47.619 0.00 0.00 43.37 3.72
753 774 1.134753 TGGTTGCTTGTTGCTCTTGTG 59.865 47.619 0.00 0.00 43.37 3.33
754 775 1.134946 GTGGTTGCTTGTTGCTCTTGT 59.865 47.619 0.00 0.00 43.37 3.16
755 776 1.134753 TGTGGTTGCTTGTTGCTCTTG 59.865 47.619 0.00 0.00 43.37 3.02
794 817 6.479990 CCAGTGAATATTCATTCTTACGAGCA 59.520 38.462 20.65 0.00 41.09 4.26
802 825 5.121380 ACCTGCCAGTGAATATTCATTCT 57.879 39.130 20.65 11.50 41.09 2.40
875 898 1.891150 GGAGCGGACGGATTTATAGGA 59.109 52.381 0.00 0.00 0.00 2.94
916 939 2.962253 GTGTCTGATAGGCGCGGC 60.962 66.667 27.06 27.06 0.00 6.53
925 948 1.051008 TGACAGGTGCAGTGTCTGAT 58.949 50.000 23.22 6.10 44.02 2.90
969 993 2.621407 CCTTGCTTCCCTTGCCTTATCA 60.621 50.000 0.00 0.00 0.00 2.15
1560 1584 2.506217 GCGAAGTCGATGACGCCA 60.506 61.111 17.49 0.00 44.27 5.69
2519 2543 8.792831 AAATACGTGTATCCGTTATTAGAGTG 57.207 34.615 0.00 0.00 42.00 3.51
2552 4458 0.179225 GTGCGTGCAAACATACCGAG 60.179 55.000 0.00 0.00 0.00 4.63
2553 4459 0.880718 TGTGCGTGCAAACATACCGA 60.881 50.000 0.00 0.00 0.00 4.69
2554 4460 0.040870 TTGTGCGTGCAAACATACCG 60.041 50.000 0.00 0.00 0.00 4.02
2555 4461 2.126914 TTTGTGCGTGCAAACATACC 57.873 45.000 0.00 0.00 33.91 2.73
2556 4462 3.119463 GTCATTTGTGCGTGCAAACATAC 59.881 43.478 0.00 4.79 40.58 2.39
2557 4463 3.243201 TGTCATTTGTGCGTGCAAACATA 60.243 39.130 0.00 0.00 40.58 2.29
2558 4464 2.126467 GTCATTTGTGCGTGCAAACAT 58.874 42.857 0.00 0.00 40.58 2.71
2559 4465 1.135286 TGTCATTTGTGCGTGCAAACA 60.135 42.857 0.00 0.00 40.58 2.83
2560 4466 1.554392 TGTCATTTGTGCGTGCAAAC 58.446 45.000 0.00 0.00 40.58 2.93
2561 4467 2.125685 CATGTCATTTGTGCGTGCAAA 58.874 42.857 0.00 8.49 41.77 3.68
2562 4468 1.768510 CATGTCATTTGTGCGTGCAA 58.231 45.000 0.00 0.00 0.00 4.08
2563 4469 0.663867 GCATGTCATTTGTGCGTGCA 60.664 50.000 13.13 0.00 42.69 4.57
2564 4470 2.064387 GCATGTCATTTGTGCGTGC 58.936 52.632 0.00 0.00 37.86 5.34
2610 4516 3.323691 ACCCAACCCAACATAAAAAGAGC 59.676 43.478 0.00 0.00 0.00 4.09
2612 4518 4.810345 AGACCCAACCCAACATAAAAAGA 58.190 39.130 0.00 0.00 0.00 2.52
2619 4525 0.768622 TTCGAGACCCAACCCAACAT 59.231 50.000 0.00 0.00 0.00 2.71
2745 4652 0.179067 GTCCCTTCGTTCCACACACA 60.179 55.000 0.00 0.00 0.00 3.72
2760 4667 3.314635 GCATGTCTCATTCTCATTGTCCC 59.685 47.826 0.00 0.00 0.00 4.46
2783 4690 3.700350 CAGGGAGGGGAGGGGAGT 61.700 72.222 0.00 0.00 0.00 3.85
2784 4691 3.700350 ACAGGGAGGGGAGGGGAG 61.700 72.222 0.00 0.00 0.00 4.30
2785 4692 3.695825 GACAGGGAGGGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
2788 4695 4.787280 AGCGACAGGGAGGGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
2789 4696 3.151022 GAGCGACAGGGAGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
2790 4697 4.779733 GGAGCGACAGGGAGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
2819 4726 4.825679 GAGGGGGAGGGGAGGTGG 62.826 77.778 0.00 0.00 0.00 4.61
2820 4727 4.825679 GGAGGGGGAGGGGAGGTG 62.826 77.778 0.00 0.00 0.00 4.00
2827 4734 3.711782 AAGGAGGGGAGGGGGAGG 61.712 72.222 0.00 0.00 0.00 4.30
2828 4735 2.367512 CAAGGAGGGGAGGGGGAG 60.368 72.222 0.00 0.00 0.00 4.30
2829 4736 4.760220 GCAAGGAGGGGAGGGGGA 62.760 72.222 0.00 0.00 0.00 4.81
2834 4741 4.821589 GACGCGCAAGGAGGGGAG 62.822 72.222 5.73 0.00 38.28 4.30
2855 4762 4.082523 ACGGACTGGACGCCATGG 62.083 66.667 7.63 7.63 30.82 3.66
2856 4763 2.509336 GACGGACTGGACGCCATG 60.509 66.667 0.00 0.00 30.82 3.66
2857 4764 3.771160 GGACGGACTGGACGCCAT 61.771 66.667 0.00 0.00 30.82 4.40
2858 4765 4.988716 AGGACGGACTGGACGCCA 62.989 66.667 0.00 0.00 32.52 5.69
2859 4766 4.131088 GAGGACGGACTGGACGCC 62.131 72.222 0.00 0.00 34.00 5.68
2860 4767 4.477975 CGAGGACGGACTGGACGC 62.478 72.222 0.00 0.00 35.72 5.19
2885 4792 4.803426 CAGCCCTGCGAGACGGAC 62.803 72.222 0.00 0.00 0.00 4.79
2889 4796 3.695606 TCACCAGCCCTGCGAGAC 61.696 66.667 0.00 0.00 0.00 3.36
2890 4797 3.695606 GTCACCAGCCCTGCGAGA 61.696 66.667 0.00 0.00 0.00 4.04
2891 4798 4.767255 GGTCACCAGCCCTGCGAG 62.767 72.222 0.00 0.00 0.00 5.03
2919 4826 4.554036 GAGATGCCCAGGCCGGAC 62.554 72.222 5.05 0.00 41.09 4.79
2922 4829 4.247380 GAGGAGATGCCCAGGCCG 62.247 72.222 6.14 0.00 41.09 6.13
2923 4830 2.381941 AAGAGGAGATGCCCAGGCC 61.382 63.158 6.14 0.00 41.09 5.19
2924 4831 1.153005 CAAGAGGAGATGCCCAGGC 60.153 63.158 0.38 0.38 42.35 4.85
2925 4832 1.153005 GCAAGAGGAGATGCCCAGG 60.153 63.158 0.00 0.00 36.56 4.45
2926 4833 0.179051 GAGCAAGAGGAGATGCCCAG 60.179 60.000 0.00 0.00 43.57 4.45
2927 4834 1.910722 GAGCAAGAGGAGATGCCCA 59.089 57.895 0.00 0.00 43.57 5.36
2928 4835 1.227497 CGAGCAAGAGGAGATGCCC 60.227 63.158 0.00 0.00 43.57 5.36
2929 4836 1.227497 CCGAGCAAGAGGAGATGCC 60.227 63.158 0.00 0.00 43.57 4.40
2930 4837 1.819229 TCCGAGCAAGAGGAGATGC 59.181 57.895 0.00 0.00 42.87 3.91
2935 4842 1.303398 ACGACTCCGAGCAAGAGGA 60.303 57.895 0.00 0.00 39.50 3.71
2936 4843 1.137825 GACGACTCCGAGCAAGAGG 59.862 63.158 0.00 0.00 39.50 3.69
2937 4844 1.137825 GGACGACTCCGAGCAAGAG 59.862 63.158 0.00 0.00 39.50 2.85
2938 4845 3.275088 GGACGACTCCGAGCAAGA 58.725 61.111 0.00 0.00 39.50 3.02
2946 4853 2.783288 GGGACCATCGGACGACTCC 61.783 68.421 0.00 1.71 0.00 3.85
2947 4854 2.806237 GGGACCATCGGACGACTC 59.194 66.667 0.00 0.00 0.00 3.36
2948 4855 3.138798 CGGGACCATCGGACGACT 61.139 66.667 0.00 0.00 0.00 4.18
2967 4874 4.838486 GACGAGACCTCCAGCGCG 62.838 72.222 0.00 0.00 0.00 6.86
2968 4875 4.838486 CGACGAGACCTCCAGCGC 62.838 72.222 0.00 0.00 0.00 5.92
2969 4876 4.838486 GCGACGAGACCTCCAGCG 62.838 72.222 0.00 0.00 0.00 5.18
2970 4877 4.838486 CGCGACGAGACCTCCAGC 62.838 72.222 0.00 0.00 0.00 4.85
2971 4878 4.180946 CCGCGACGAGACCTCCAG 62.181 72.222 8.23 0.00 0.00 3.86
3048 4955 4.740822 AACCCATGGCCGGACAGC 62.741 66.667 18.96 0.00 0.00 4.40
3049 4956 2.035626 AAACCCATGGCCGGACAG 59.964 61.111 18.96 4.37 0.00 3.51
3050 4957 2.034999 GAAACCCATGGCCGGACA 59.965 61.111 15.46 15.46 0.00 4.02
3051 4958 3.131478 CGAAACCCATGGCCGGAC 61.131 66.667 5.05 0.56 0.00 4.79
3052 4959 4.418328 CCGAAACCCATGGCCGGA 62.418 66.667 21.07 0.00 42.49 5.14
3069 4976 2.044551 CTTCTTGGAGGGCTGGGC 60.045 66.667 0.00 0.00 0.00 5.36
3070 4977 1.301293 GACTTCTTGGAGGGCTGGG 59.699 63.158 0.00 0.00 0.00 4.45
3071 4978 1.078848 CGACTTCTTGGAGGGCTGG 60.079 63.158 0.00 0.00 0.00 4.85
3072 4979 1.743252 GCGACTTCTTGGAGGGCTG 60.743 63.158 0.00 0.00 0.00 4.85
3073 4980 0.614979 TAGCGACTTCTTGGAGGGCT 60.615 55.000 0.00 3.06 35.58 5.19
3074 4981 0.466124 ATAGCGACTTCTTGGAGGGC 59.534 55.000 0.00 0.00 0.00 5.19
3075 4982 1.202580 CCATAGCGACTTCTTGGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
3076 4983 1.757118 TCCATAGCGACTTCTTGGAGG 59.243 52.381 0.00 0.00 32.80 4.30
3077 4984 3.090952 CTCCATAGCGACTTCTTGGAG 57.909 52.381 3.11 3.11 45.32 3.86
3078 4985 1.757118 CCTCCATAGCGACTTCTTGGA 59.243 52.381 0.00 0.00 35.29 3.53
3079 4986 1.808133 GCCTCCATAGCGACTTCTTGG 60.808 57.143 0.00 0.00 0.00 3.61
3080 4987 1.576356 GCCTCCATAGCGACTTCTTG 58.424 55.000 0.00 0.00 0.00 3.02
3089 4996 4.221422 TGACGCCGCCTCCATAGC 62.221 66.667 0.00 0.00 0.00 2.97
3090 4997 2.279517 GTGACGCCGCCTCCATAG 60.280 66.667 0.00 0.00 0.00 2.23
3091 4998 4.201679 CGTGACGCCGCCTCCATA 62.202 66.667 0.00 0.00 0.00 2.74
3129 5036 3.400054 GACGGTGGGGGAAGGGAG 61.400 72.222 0.00 0.00 0.00 4.30
3130 5037 4.257810 TGACGGTGGGGGAAGGGA 62.258 66.667 0.00 0.00 0.00 4.20
3131 5038 3.717294 CTGACGGTGGGGGAAGGG 61.717 72.222 0.00 0.00 0.00 3.95
3132 5039 3.717294 CCTGACGGTGGGGGAAGG 61.717 72.222 0.00 0.00 0.00 3.46
3133 5040 4.410400 GCCTGACGGTGGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
3144 5051 4.500116 GGAGACCTCGCGCCTGAC 62.500 72.222 0.00 0.00 0.00 3.51
3156 5063 1.517832 CGTCCATGTCAGGGGAGAC 59.482 63.158 3.19 0.00 38.99 3.36
3157 5064 1.685765 CCGTCCATGTCAGGGGAGA 60.686 63.158 3.19 0.00 32.85 3.71
3158 5065 2.735772 CCCGTCCATGTCAGGGGAG 61.736 68.421 12.43 0.00 40.90 4.30
3159 5066 2.687200 CCCGTCCATGTCAGGGGA 60.687 66.667 12.43 0.00 40.90 4.81
3160 5067 4.489771 GCCCGTCCATGTCAGGGG 62.490 72.222 15.60 14.40 43.95 4.79
3161 5068 3.391665 GAGCCCGTCCATGTCAGGG 62.392 68.421 11.10 11.10 46.44 4.45
3162 5069 2.187946 GAGCCCGTCCATGTCAGG 59.812 66.667 0.00 0.00 0.00 3.86
3163 5070 1.153489 CAGAGCCCGTCCATGTCAG 60.153 63.158 0.00 0.00 0.00 3.51
3164 5071 2.981302 CAGAGCCCGTCCATGTCA 59.019 61.111 0.00 0.00 0.00 3.58
3165 5072 2.512515 GCAGAGCCCGTCCATGTC 60.513 66.667 0.00 0.00 0.00 3.06
3166 5073 2.527951 GAAGCAGAGCCCGTCCATGT 62.528 60.000 0.00 0.00 0.00 3.21
3167 5074 1.817099 GAAGCAGAGCCCGTCCATG 60.817 63.158 0.00 0.00 0.00 3.66
3168 5075 2.249413 CTGAAGCAGAGCCCGTCCAT 62.249 60.000 0.00 0.00 32.44 3.41
3169 5076 2.922503 TGAAGCAGAGCCCGTCCA 60.923 61.111 0.00 0.00 0.00 4.02
3170 5077 1.965754 ATCTGAAGCAGAGCCCGTCC 61.966 60.000 3.36 0.00 44.08 4.79
3171 5078 0.809241 CATCTGAAGCAGAGCCCGTC 60.809 60.000 3.36 0.00 44.08 4.79
3172 5079 1.220206 CATCTGAAGCAGAGCCCGT 59.780 57.895 3.36 0.00 44.08 5.28
3173 5080 0.809241 GACATCTGAAGCAGAGCCCG 60.809 60.000 3.36 0.00 44.08 6.13
3174 5081 0.540923 AGACATCTGAAGCAGAGCCC 59.459 55.000 3.36 0.00 44.08 5.19
3175 5082 1.473080 GGAGACATCTGAAGCAGAGCC 60.473 57.143 3.36 0.00 44.08 4.70
3176 5083 1.802136 CGGAGACATCTGAAGCAGAGC 60.802 57.143 3.36 0.00 44.08 4.09
3177 5084 1.202394 CCGGAGACATCTGAAGCAGAG 60.202 57.143 0.00 0.00 44.08 3.35
3178 5085 0.820226 CCGGAGACATCTGAAGCAGA 59.180 55.000 0.00 0.00 44.99 4.26
3179 5086 0.179089 CCCGGAGACATCTGAAGCAG 60.179 60.000 0.73 0.00 33.17 4.24
3180 5087 0.614697 TCCCGGAGACATCTGAAGCA 60.615 55.000 0.73 0.00 33.17 3.91
3181 5088 0.103937 CTCCCGGAGACATCTGAAGC 59.896 60.000 9.01 0.00 33.17 3.86
3182 5089 0.749649 CCTCCCGGAGACATCTGAAG 59.250 60.000 16.69 0.00 33.17 3.02
3183 5090 0.687757 CCCTCCCGGAGACATCTGAA 60.688 60.000 16.69 0.00 33.17 3.02
3184 5091 1.075970 CCCTCCCGGAGACATCTGA 60.076 63.158 16.69 0.00 33.17 3.27
3185 5092 2.801631 GCCCTCCCGGAGACATCTG 61.802 68.421 16.69 0.00 0.00 2.90
3186 5093 2.444895 GCCCTCCCGGAGACATCT 60.445 66.667 16.69 0.00 0.00 2.90
3187 5094 3.551407 GGCCCTCCCGGAGACATC 61.551 72.222 16.69 1.79 0.00 3.06
3188 5095 3.721172 ATGGCCCTCCCGGAGACAT 62.721 63.158 16.69 13.43 35.87 3.06
3189 5096 4.414956 ATGGCCCTCCCGGAGACA 62.415 66.667 16.69 11.78 35.87 3.41
3190 5097 3.551407 GATGGCCCTCCCGGAGAC 61.551 72.222 16.69 7.41 35.87 3.36
3191 5098 3.410788 ATGATGGCCCTCCCGGAGA 62.411 63.158 16.69 0.00 35.87 3.71
3192 5099 2.851102 ATGATGGCCCTCCCGGAG 60.851 66.667 0.73 7.56 35.87 4.63
3193 5100 2.849162 GATGATGGCCCTCCCGGA 60.849 66.667 0.73 0.00 35.87 5.14
3194 5101 4.320456 CGATGATGGCCCTCCCGG 62.320 72.222 0.00 0.00 35.87 5.73
3195 5102 4.996434 GCGATGATGGCCCTCCCG 62.996 72.222 0.00 7.91 35.87 5.14
3196 5103 4.650377 GGCGATGATGGCCCTCCC 62.650 72.222 7.28 0.00 44.97 4.30
3202 5109 1.890979 CAGTCCTGGCGATGATGGC 60.891 63.158 0.00 0.00 0.00 4.40
3203 5110 1.890979 GCAGTCCTGGCGATGATGG 60.891 63.158 0.00 0.00 0.00 3.51
3204 5111 1.153309 TGCAGTCCTGGCGATGATG 60.153 57.895 0.00 0.00 0.00 3.07
3205 5112 1.153289 GTGCAGTCCTGGCGATGAT 60.153 57.895 0.00 0.00 0.00 2.45
3206 5113 2.265739 GTGCAGTCCTGGCGATGA 59.734 61.111 0.00 0.00 0.00 2.92
3207 5114 2.821366 GGTGCAGTCCTGGCGATG 60.821 66.667 0.00 0.00 0.00 3.84
3208 5115 2.894257 TTGGTGCAGTCCTGGCGAT 61.894 57.895 0.00 0.00 0.00 4.58
3209 5116 3.555324 TTGGTGCAGTCCTGGCGA 61.555 61.111 0.00 0.00 0.00 5.54
3210 5117 3.357079 GTTGGTGCAGTCCTGGCG 61.357 66.667 0.00 0.00 0.00 5.69
3211 5118 3.357079 CGTTGGTGCAGTCCTGGC 61.357 66.667 0.00 0.00 0.00 4.85
3212 5119 3.357079 GCGTTGGTGCAGTCCTGG 61.357 66.667 0.00 0.00 34.15 4.45
3213 5120 3.357079 GGCGTTGGTGCAGTCCTG 61.357 66.667 0.00 0.00 36.28 3.86
3214 5121 3.196207 ATGGCGTTGGTGCAGTCCT 62.196 57.895 0.00 0.00 36.28 3.85
3215 5122 2.672996 ATGGCGTTGGTGCAGTCC 60.673 61.111 0.00 0.00 36.28 3.85
3216 5123 2.870372 GATGGCGTTGGTGCAGTC 59.130 61.111 0.00 0.00 36.28 3.51
3217 5124 3.049674 CGATGGCGTTGGTGCAGT 61.050 61.111 0.00 0.00 36.28 4.40
3227 5134 2.242572 CCTGATGCAGACGATGGCG 61.243 63.158 0.00 0.00 44.79 5.69
3228 5135 1.153289 ACCTGATGCAGACGATGGC 60.153 57.895 0.00 0.00 32.44 4.40
3229 5136 2.686602 CACCTGATGCAGACGATGG 58.313 57.895 0.00 0.00 32.44 3.51
3239 5146 1.012086 CTTCATCACCGCACCTGATG 58.988 55.000 8.35 8.35 44.42 3.07
3240 5147 0.107508 CCTTCATCACCGCACCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
3241 5148 1.296392 CCTTCATCACCGCACCTGA 59.704 57.895 0.00 0.00 0.00 3.86
3242 5149 2.401766 GCCTTCATCACCGCACCTG 61.402 63.158 0.00 0.00 0.00 4.00
3243 5150 2.045926 GCCTTCATCACCGCACCT 60.046 61.111 0.00 0.00 0.00 4.00
3244 5151 3.134127 GGCCTTCATCACCGCACC 61.134 66.667 0.00 0.00 0.00 5.01
3245 5152 1.750399 ATGGCCTTCATCACCGCAC 60.750 57.895 3.32 0.00 0.00 5.34
3246 5153 1.750018 CATGGCCTTCATCACCGCA 60.750 57.895 3.32 0.00 32.92 5.69
3247 5154 2.484062 CCATGGCCTTCATCACCGC 61.484 63.158 3.32 0.00 32.92 5.68
3248 5155 0.680921 AACCATGGCCTTCATCACCG 60.681 55.000 13.04 0.00 32.92 4.94
3249 5156 1.106285 GAACCATGGCCTTCATCACC 58.894 55.000 13.04 0.00 32.92 4.02
3250 5157 0.734889 CGAACCATGGCCTTCATCAC 59.265 55.000 13.04 0.00 32.92 3.06
3251 5158 0.617935 TCGAACCATGGCCTTCATCA 59.382 50.000 13.04 0.00 32.92 3.07
3252 5159 1.303309 CTCGAACCATGGCCTTCATC 58.697 55.000 13.04 0.00 32.92 2.92
3253 5160 0.107017 CCTCGAACCATGGCCTTCAT 60.107 55.000 13.04 0.00 36.31 2.57
3254 5161 1.299648 CCTCGAACCATGGCCTTCA 59.700 57.895 13.04 0.01 0.00 3.02
3255 5162 1.452108 CCCTCGAACCATGGCCTTC 60.452 63.158 13.04 8.40 0.00 3.46
3256 5163 1.923395 TCCCTCGAACCATGGCCTT 60.923 57.895 13.04 0.00 0.00 4.35
3257 5164 2.285368 TCCCTCGAACCATGGCCT 60.285 61.111 13.04 0.00 0.00 5.19
3258 5165 2.124695 GTCCCTCGAACCATGGCC 60.125 66.667 13.04 2.78 0.00 5.36
3259 5166 1.450312 CAGTCCCTCGAACCATGGC 60.450 63.158 13.04 0.00 0.00 4.40
3260 5167 1.191535 TACAGTCCCTCGAACCATGG 58.808 55.000 11.19 11.19 0.00 3.66
3261 5168 2.893637 CTTACAGTCCCTCGAACCATG 58.106 52.381 0.00 0.00 0.00 3.66
3262 5169 1.207329 GCTTACAGTCCCTCGAACCAT 59.793 52.381 0.00 0.00 0.00 3.55
3263 5170 0.606604 GCTTACAGTCCCTCGAACCA 59.393 55.000 0.00 0.00 0.00 3.67
3264 5171 0.458025 CGCTTACAGTCCCTCGAACC 60.458 60.000 0.00 0.00 0.00 3.62
3265 5172 1.077089 GCGCTTACAGTCCCTCGAAC 61.077 60.000 0.00 0.00 0.00 3.95
3266 5173 1.214589 GCGCTTACAGTCCCTCGAA 59.785 57.895 0.00 0.00 0.00 3.71
3267 5174 2.707849 GGCGCTTACAGTCCCTCGA 61.708 63.158 7.64 0.00 0.00 4.04
3268 5175 2.202756 GGCGCTTACAGTCCCTCG 60.203 66.667 7.64 0.00 0.00 4.63
3269 5176 2.187163 GGGCGCTTACAGTCCCTC 59.813 66.667 7.64 0.00 35.87 4.30
3270 5177 2.606519 TGGGCGCTTACAGTCCCT 60.607 61.111 7.64 0.00 39.49 4.20
3271 5178 2.436115 GTGGGCGCTTACAGTCCC 60.436 66.667 7.64 0.00 39.22 4.46
3272 5179 2.775032 TTCGTGGGCGCTTACAGTCC 62.775 60.000 7.64 0.00 38.14 3.85
3273 5180 1.352156 CTTCGTGGGCGCTTACAGTC 61.352 60.000 7.64 0.00 38.14 3.51
3274 5181 1.374252 CTTCGTGGGCGCTTACAGT 60.374 57.895 7.64 0.00 38.14 3.55
3275 5182 2.740714 GCTTCGTGGGCGCTTACAG 61.741 63.158 7.64 2.67 38.14 2.74
3276 5183 2.740826 GCTTCGTGGGCGCTTACA 60.741 61.111 7.64 0.91 38.14 2.41
3277 5184 3.497031 GGCTTCGTGGGCGCTTAC 61.497 66.667 7.64 5.89 38.14 2.34
3278 5185 4.770874 GGGCTTCGTGGGCGCTTA 62.771 66.667 7.64 0.00 39.14 3.09
3290 5197 2.603776 ACCTCGGAAGACGGGCTT 60.604 61.111 0.00 0.00 43.33 4.35
3291 5198 3.382832 CACCTCGGAAGACGGGCT 61.383 66.667 0.00 0.00 43.33 5.19
3292 5199 4.452733 CCACCTCGGAAGACGGGC 62.453 72.222 0.00 0.00 43.33 6.13
3293 5200 2.678934 TCCACCTCGGAAGACGGG 60.679 66.667 0.00 0.00 42.52 5.28
3294 5201 2.885861 CTCCACCTCGGAAGACGG 59.114 66.667 0.00 0.00 45.75 4.79
3295 5202 2.182030 GCTCCACCTCGGAAGACG 59.818 66.667 0.00 0.00 45.75 4.18
3296 5203 1.513622 GAGCTCCACCTCGGAAGAC 59.486 63.158 0.87 0.00 45.75 3.01
3297 5204 1.682684 GGAGCTCCACCTCGGAAGA 60.683 63.158 28.43 0.00 45.75 2.87
3298 5205 2.896443 GGAGCTCCACCTCGGAAG 59.104 66.667 28.43 0.00 45.75 3.46
3299 5206 3.068691 CGGAGCTCCACCTCGGAA 61.069 66.667 31.67 0.00 45.75 4.30
3321 5228 2.892425 GACCTTGGCGATGGCGAG 60.892 66.667 0.17 0.81 41.24 5.03
3322 5229 4.812476 CGACCTTGGCGATGGCGA 62.812 66.667 0.00 0.00 35.20 5.54
3396 5303 4.803426 GGCACCAGCTCGAGACGG 62.803 72.222 18.75 17.46 41.70 4.79
3398 5305 4.803426 CCGGCACCAGCTCGAGAC 62.803 72.222 18.75 7.74 41.70 3.36
3426 5333 4.097361 GAGACGGGGCCAAGGGTC 62.097 72.222 4.39 7.01 0.00 4.46
3430 5337 3.458163 TAGCGAGACGGGGCCAAG 61.458 66.667 4.39 0.22 0.00 3.61
3431 5338 3.766691 GTAGCGAGACGGGGCCAA 61.767 66.667 4.39 0.00 0.00 4.52
3432 5339 4.753662 AGTAGCGAGACGGGGCCA 62.754 66.667 4.39 0.00 0.00 5.36
3433 5340 3.902086 GAGTAGCGAGACGGGGCC 61.902 72.222 0.00 0.00 0.00 5.80
3434 5341 3.902086 GGAGTAGCGAGACGGGGC 61.902 72.222 0.00 0.00 0.00 5.80
3435 5342 3.584052 CGGAGTAGCGAGACGGGG 61.584 72.222 0.00 0.00 0.00 5.73
3436 5343 4.253257 GCGGAGTAGCGAGACGGG 62.253 72.222 0.00 0.00 0.00 5.28
3458 5365 2.747855 CTTGGAGCCGGTGGAAGC 60.748 66.667 1.90 0.00 0.00 3.86
3459 5366 2.045926 CCTTGGAGCCGGTGGAAG 60.046 66.667 1.90 0.34 0.00 3.46
3460 5367 2.457323 AACCTTGGAGCCGGTGGAA 61.457 57.895 1.90 0.00 32.86 3.53
3461 5368 2.852075 AACCTTGGAGCCGGTGGA 60.852 61.111 1.90 0.00 32.86 4.02
3462 5369 2.484287 ATCAACCTTGGAGCCGGTGG 62.484 60.000 1.90 0.00 32.86 4.61
3463 5370 1.002134 ATCAACCTTGGAGCCGGTG 60.002 57.895 1.90 0.00 32.86 4.94
3464 5371 1.002134 CATCAACCTTGGAGCCGGT 60.002 57.895 1.90 0.00 34.27 5.28
3465 5372 0.609131 AACATCAACCTTGGAGCCGG 60.609 55.000 0.00 0.00 0.00 6.13
3466 5373 0.523072 CAACATCAACCTTGGAGCCG 59.477 55.000 0.00 0.00 0.00 5.52
3467 5374 0.244721 GCAACATCAACCTTGGAGCC 59.755 55.000 0.00 0.00 0.00 4.70
3468 5375 0.244721 GGCAACATCAACCTTGGAGC 59.755 55.000 0.00 0.00 0.00 4.70
3469 5376 0.523072 CGGCAACATCAACCTTGGAG 59.477 55.000 0.00 0.00 0.00 3.86
3470 5377 0.109532 TCGGCAACATCAACCTTGGA 59.890 50.000 0.00 0.00 0.00 3.53
3471 5378 1.135315 CATCGGCAACATCAACCTTGG 60.135 52.381 0.00 0.00 0.00 3.61
3472 5379 1.135315 CCATCGGCAACATCAACCTTG 60.135 52.381 0.00 0.00 0.00 3.61
3473 5380 1.176527 CCATCGGCAACATCAACCTT 58.823 50.000 0.00 0.00 0.00 3.50
3474 5381 0.327924 TCCATCGGCAACATCAACCT 59.672 50.000 0.00 0.00 0.00 3.50
3475 5382 0.451783 GTCCATCGGCAACATCAACC 59.548 55.000 0.00 0.00 0.00 3.77
3476 5383 1.135689 GTGTCCATCGGCAACATCAAC 60.136 52.381 0.00 0.00 0.00 3.18
3477 5384 1.164411 GTGTCCATCGGCAACATCAA 58.836 50.000 0.00 0.00 0.00 2.57
3478 5385 1.018752 CGTGTCCATCGGCAACATCA 61.019 55.000 0.00 0.00 0.00 3.07
3479 5386 0.739462 TCGTGTCCATCGGCAACATC 60.739 55.000 0.00 0.00 0.00 3.06
3480 5387 1.019278 GTCGTGTCCATCGGCAACAT 61.019 55.000 0.00 0.00 32.96 2.71
3481 5388 1.666553 GTCGTGTCCATCGGCAACA 60.667 57.895 0.00 0.00 32.96 3.33
3482 5389 2.388232 GGTCGTGTCCATCGGCAAC 61.388 63.158 0.00 0.00 34.45 4.17
3483 5390 2.047655 GGTCGTGTCCATCGGCAA 60.048 61.111 0.00 0.00 34.45 4.52
3484 5391 2.655073 ATGGTCGTGTCCATCGGCA 61.655 57.895 4.33 0.00 43.85 5.69
3485 5392 2.173669 CATGGTCGTGTCCATCGGC 61.174 63.158 6.58 0.00 45.23 5.54
3486 5393 1.521457 CCATGGTCGTGTCCATCGG 60.521 63.158 2.57 8.06 45.23 4.18
3487 5394 0.806102 GTCCATGGTCGTGTCCATCG 60.806 60.000 12.58 2.29 45.23 3.84
3488 5395 0.462047 GGTCCATGGTCGTGTCCATC 60.462 60.000 12.58 0.00 45.23 3.51
3490 5397 2.589157 GGGTCCATGGTCGTGTCCA 61.589 63.158 12.58 0.00 42.01 4.02
3491 5398 2.267961 GGGTCCATGGTCGTGTCC 59.732 66.667 12.58 6.04 0.00 4.02
3492 5399 2.125673 CGGGTCCATGGTCGTGTC 60.126 66.667 12.58 0.00 0.00 3.67
3493 5400 2.920912 ACGGGTCCATGGTCGTGT 60.921 61.111 22.27 12.41 34.40 4.49
3494 5401 2.125673 GACGGGTCCATGGTCGTG 60.126 66.667 25.84 13.91 35.91 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.