Multiple sequence alignment - TraesCS6B01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G254100 chr6B 100.000 2552 0 0 1 2552 457215128 457212577 0.000000e+00 4713.0
1 TraesCS6B01G254100 chr6B 89.076 595 35 12 1953 2520 149579 148988 0.000000e+00 712.0
2 TraesCS6B01G254100 chr6B 97.619 42 0 1 2509 2550 148941 148901 1.270000e-08 71.3
3 TraesCS6B01G254100 chr6D 92.990 1940 121 12 589 2517 323166684 323168619 0.000000e+00 2815.0
4 TraesCS6B01G254100 chr6D 82.166 471 55 16 142 602 292737114 292736663 6.660000e-101 377.0
5 TraesCS6B01G254100 chr6A 92.124 1930 135 13 602 2517 76046188 76048114 0.000000e+00 2706.0
6 TraesCS6B01G254100 chr6A 89.056 466 40 7 602 1060 3521318 3521779 3.680000e-158 568.0
7 TraesCS6B01G254100 chr7B 91.439 1939 117 17 603 2517 648202539 648204452 0.000000e+00 2615.0
8 TraesCS6B01G254100 chr7B 90.133 375 28 8 602 971 552932144 552931774 1.780000e-131 479.0
9 TraesCS6B01G254100 chr7B 100.000 36 0 0 2509 2544 318368273 318368238 1.640000e-07 67.6
10 TraesCS6B01G254100 chr5D 91.933 1847 105 23 598 2423 44511939 44513762 0.000000e+00 2545.0
11 TraesCS6B01G254100 chr5D 92.945 1375 70 14 603 1956 539819769 539818401 0.000000e+00 1977.0
12 TraesCS6B01G254100 chr5D 89.920 377 32 4 603 974 363887964 363888339 4.940000e-132 481.0
13 TraesCS6B01G254100 chr5D 88.564 376 33 8 602 971 520497540 520497169 5.010000e-122 448.0
14 TraesCS6B01G254100 chr5D 97.436 39 1 0 2514 2552 44514021 44514059 1.640000e-07 67.6
15 TraesCS6B01G254100 chr3A 91.388 1881 128 19 603 2466 235187479 235189342 0.000000e+00 2545.0
16 TraesCS6B01G254100 chr3A 89.791 382 27 10 596 971 710100131 710099756 1.780000e-131 479.0
17 TraesCS6B01G254100 chr3A 89.295 383 28 11 593 968 617401013 617401389 3.840000e-128 468.0
18 TraesCS6B01G254100 chrUn 92.214 1798 101 21 646 2423 43407879 43409657 0.000000e+00 2508.0
19 TraesCS6B01G254100 chr2D 91.608 1835 121 16 606 2426 645082450 645080635 0.000000e+00 2505.0
20 TraesCS6B01G254100 chr2D 90.300 1866 109 28 603 2423 16065486 16067324 0.000000e+00 2377.0
21 TraesCS6B01G254100 chr2D 92.787 915 50 5 596 1496 572809860 572810772 0.000000e+00 1310.0
22 TraesCS6B01G254100 chr2D 89.008 373 31 7 602 968 647705357 647705725 1.080000e-123 453.0
23 TraesCS6B01G254100 chr7D 89.723 1878 107 37 602 2426 22901539 22899695 0.000000e+00 2320.0
24 TraesCS6B01G254100 chr2B 92.866 1598 101 11 928 2517 39826206 39827798 0.000000e+00 2307.0
25 TraesCS6B01G254100 chr2B 91.244 217 17 2 2297 2511 57100761 57100545 6.900000e-76 294.0
26 TraesCS6B01G254100 chr3B 86.734 1990 175 35 603 2520 124502329 124500357 0.000000e+00 2130.0
27 TraesCS6B01G254100 chr3B 86.482 1990 182 40 602 2520 778932257 778930284 0.000000e+00 2104.0
28 TraesCS6B01G254100 chr3B 92.889 225 14 2 2297 2520 778873765 778873542 2.450000e-85 326.0
29 TraesCS6B01G254100 chr3B 95.745 47 2 0 2506 2552 678030151 678030197 2.720000e-10 76.8
30 TraesCS6B01G254100 chr3B 93.333 45 2 1 2506 2550 678047509 678047552 5.890000e-07 65.8
31 TraesCS6B01G254100 chr5B 80.000 125 23 2 1 124 241162680 241162557 9.720000e-15 91.6
32 TraesCS6B01G254100 chr3D 78.322 143 24 6 2 141 372521650 372521512 4.520000e-13 86.1
33 TraesCS6B01G254100 chr3D 95.455 44 2 0 2509 2552 25095755 25095712 1.270000e-08 71.3
34 TraesCS6B01G254100 chr1D 95.238 42 1 1 2509 2550 347250987 347250947 5.890000e-07 65.8
35 TraesCS6B01G254100 chr4D 92.857 42 2 1 2509 2550 495797105 495797065 2.740000e-05 60.2
36 TraesCS6B01G254100 chr4A 97.143 35 1 0 2506 2540 702865744 702865778 2.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G254100 chr6B 457212577 457215128 2551 True 4713.00 4713 100.0000 1 2552 1 chr6B.!!$R1 2551
1 TraesCS6B01G254100 chr6B 148901 149579 678 True 391.65 712 93.3475 1953 2550 2 chr6B.!!$R2 597
2 TraesCS6B01G254100 chr6D 323166684 323168619 1935 False 2815.00 2815 92.9900 589 2517 1 chr6D.!!$F1 1928
3 TraesCS6B01G254100 chr6A 76046188 76048114 1926 False 2706.00 2706 92.1240 602 2517 1 chr6A.!!$F2 1915
4 TraesCS6B01G254100 chr7B 648202539 648204452 1913 False 2615.00 2615 91.4390 603 2517 1 chr7B.!!$F1 1914
5 TraesCS6B01G254100 chr5D 539818401 539819769 1368 True 1977.00 1977 92.9450 603 1956 1 chr5D.!!$R2 1353
6 TraesCS6B01G254100 chr5D 44511939 44514059 2120 False 1306.30 2545 94.6845 598 2552 2 chr5D.!!$F2 1954
7 TraesCS6B01G254100 chr3A 235187479 235189342 1863 False 2545.00 2545 91.3880 603 2466 1 chr3A.!!$F1 1863
8 TraesCS6B01G254100 chrUn 43407879 43409657 1778 False 2508.00 2508 92.2140 646 2423 1 chrUn.!!$F1 1777
9 TraesCS6B01G254100 chr2D 645080635 645082450 1815 True 2505.00 2505 91.6080 606 2426 1 chr2D.!!$R1 1820
10 TraesCS6B01G254100 chr2D 16065486 16067324 1838 False 2377.00 2377 90.3000 603 2423 1 chr2D.!!$F1 1820
11 TraesCS6B01G254100 chr2D 572809860 572810772 912 False 1310.00 1310 92.7870 596 1496 1 chr2D.!!$F2 900
12 TraesCS6B01G254100 chr7D 22899695 22901539 1844 True 2320.00 2320 89.7230 602 2426 1 chr7D.!!$R1 1824
13 TraesCS6B01G254100 chr2B 39826206 39827798 1592 False 2307.00 2307 92.8660 928 2517 1 chr2B.!!$F1 1589
14 TraesCS6B01G254100 chr3B 124500357 124502329 1972 True 2130.00 2130 86.7340 603 2520 1 chr3B.!!$R1 1917
15 TraesCS6B01G254100 chr3B 778930284 778932257 1973 True 2104.00 2104 86.4820 602 2520 1 chr3B.!!$R3 1918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.038251 GCTGCACAAAAGGGTTAGCC 60.038 55.0 0.0 0.0 0.0 3.93 F
340 341 0.100861 GCCACCTAGCTCACGTACTC 59.899 60.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1452 0.608308 TCTTCTTCCGGAGCTCGTGA 60.608 55.0 3.34 3.5 37.11 4.35 R
2164 2312 0.257039 GAGTCCCCAGATGCACCAAT 59.743 55.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.117171 CTGTCAGTCAGGCGCTGC 61.117 66.667 7.64 0.00 40.23 5.25
18 19 3.871248 CTGTCAGTCAGGCGCTGCA 62.871 63.158 7.64 0.00 40.23 4.41
19 20 3.418068 GTCAGTCAGGCGCTGCAC 61.418 66.667 7.64 0.64 34.21 4.57
20 21 3.927548 TCAGTCAGGCGCTGCACA 61.928 61.111 7.64 0.00 34.21 4.57
21 22 3.420606 CAGTCAGGCGCTGCACAG 61.421 66.667 7.64 0.00 0.00 3.66
22 23 3.933722 AGTCAGGCGCTGCACAGT 61.934 61.111 7.64 0.00 0.00 3.55
23 24 3.720193 GTCAGGCGCTGCACAGTG 61.720 66.667 7.64 6.84 41.63 3.66
24 25 4.240103 TCAGGCGCTGCACAGTGT 62.240 61.111 7.64 0.00 40.84 3.55
25 26 3.720193 CAGGCGCTGCACAGTGTC 61.720 66.667 7.64 7.71 43.40 3.67
28 29 4.360027 GCGCTGCACAGTGTCGTG 62.360 66.667 12.43 1.68 40.84 4.35
38 39 2.874780 GTGTCGTGCGACGCCTAG 60.875 66.667 22.77 8.65 46.44 3.02
39 40 3.606065 GTGTCGTGCGACGCCTAGT 62.606 63.158 22.77 0.00 46.44 2.57
40 41 2.126580 GTCGTGCGACGCCTAGTT 60.127 61.111 18.69 0.00 42.21 2.24
41 42 2.126618 TCGTGCGACGCCTAGTTG 60.127 61.111 18.69 0.58 42.21 3.16
42 43 2.430244 CGTGCGACGCCTAGTTGT 60.430 61.111 18.69 0.00 36.60 3.32
43 44 2.434134 CGTGCGACGCCTAGTTGTC 61.434 63.158 18.69 2.34 36.60 3.18
44 45 1.372499 GTGCGACGCCTAGTTGTCA 60.372 57.895 18.69 0.00 36.60 3.58
45 46 1.080772 TGCGACGCCTAGTTGTCAG 60.081 57.895 18.69 6.01 36.60 3.51
46 47 1.805945 GCGACGCCTAGTTGTCAGG 60.806 63.158 9.14 0.00 36.60 3.86
51 52 4.192000 CCTAGTTGTCAGGCGCTG 57.808 61.111 7.64 3.67 0.00 5.18
52 53 2.103042 CCTAGTTGTCAGGCGCTGC 61.103 63.158 7.64 0.00 0.00 5.25
53 54 1.374631 CTAGTTGTCAGGCGCTGCA 60.375 57.895 7.64 3.87 0.00 4.41
54 55 1.630244 CTAGTTGTCAGGCGCTGCAC 61.630 60.000 7.64 1.37 0.00 4.57
55 56 2.376228 TAGTTGTCAGGCGCTGCACA 62.376 55.000 7.64 4.41 0.00 4.57
56 57 2.515757 TTGTCAGGCGCTGCACAA 60.516 55.556 7.64 10.80 33.10 3.33
57 58 2.117779 TTGTCAGGCGCTGCACAAA 61.118 52.632 7.64 0.00 32.83 2.83
58 59 1.661498 TTGTCAGGCGCTGCACAAAA 61.661 50.000 7.64 0.00 32.83 2.44
59 60 1.370900 GTCAGGCGCTGCACAAAAG 60.371 57.895 7.64 0.00 0.00 2.27
60 61 2.049802 CAGGCGCTGCACAAAAGG 60.050 61.111 7.64 0.00 0.00 3.11
61 62 3.297620 AGGCGCTGCACAAAAGGG 61.298 61.111 7.64 0.00 0.00 3.95
62 63 3.605664 GGCGCTGCACAAAAGGGT 61.606 61.111 7.64 0.00 0.00 4.34
63 64 2.417097 GCGCTGCACAAAAGGGTT 59.583 55.556 0.00 0.00 0.00 4.11
64 65 1.657556 GCGCTGCACAAAAGGGTTA 59.342 52.632 0.00 0.00 0.00 2.85
65 66 0.387239 GCGCTGCACAAAAGGGTTAG 60.387 55.000 0.00 0.00 0.00 2.34
66 67 0.387239 CGCTGCACAAAAGGGTTAGC 60.387 55.000 0.00 0.00 0.00 3.09
67 68 0.038251 GCTGCACAAAAGGGTTAGCC 60.038 55.000 0.00 0.00 0.00 3.93
68 69 0.240945 CTGCACAAAAGGGTTAGCCG 59.759 55.000 0.00 0.00 34.97 5.52
69 70 0.179015 TGCACAAAAGGGTTAGCCGA 60.179 50.000 0.00 0.00 34.97 5.54
70 71 0.521735 GCACAAAAGGGTTAGCCGAG 59.478 55.000 0.00 0.00 34.97 4.63
71 72 1.892209 CACAAAAGGGTTAGCCGAGT 58.108 50.000 0.00 0.00 34.97 4.18
72 73 1.535462 CACAAAAGGGTTAGCCGAGTG 59.465 52.381 0.00 0.00 34.97 3.51
73 74 1.418637 ACAAAAGGGTTAGCCGAGTGA 59.581 47.619 7.16 0.00 34.97 3.41
74 75 2.158726 ACAAAAGGGTTAGCCGAGTGAA 60.159 45.455 7.16 0.00 34.97 3.18
75 76 2.882137 CAAAAGGGTTAGCCGAGTGAAA 59.118 45.455 0.00 0.00 34.97 2.69
76 77 3.434940 AAAGGGTTAGCCGAGTGAAAT 57.565 42.857 0.00 0.00 34.97 2.17
77 78 3.434940 AAGGGTTAGCCGAGTGAAATT 57.565 42.857 0.00 0.00 34.97 1.82
78 79 3.434940 AGGGTTAGCCGAGTGAAATTT 57.565 42.857 0.00 0.00 34.97 1.82
79 80 3.763057 AGGGTTAGCCGAGTGAAATTTT 58.237 40.909 0.00 0.00 34.97 1.82
80 81 4.149598 AGGGTTAGCCGAGTGAAATTTTT 58.850 39.130 0.00 0.00 34.97 1.94
102 103 8.539770 TTTTTCAAATGCAGTTTACTTTGTGA 57.460 26.923 0.00 0.00 31.98 3.58
103 104 8.539770 TTTTCAAATGCAGTTTACTTTGTGAA 57.460 26.923 0.00 0.00 31.98 3.18
104 105 8.715191 TTTCAAATGCAGTTTACTTTGTGAAT 57.285 26.923 0.00 0.00 31.98 2.57
105 106 8.715191 TTCAAATGCAGTTTACTTTGTGAATT 57.285 26.923 0.00 0.00 31.98 2.17
106 107 9.809096 TTCAAATGCAGTTTACTTTGTGAATTA 57.191 25.926 0.00 0.00 31.98 1.40
107 108 9.462174 TCAAATGCAGTTTACTTTGTGAATTAG 57.538 29.630 0.00 0.00 31.98 1.73
108 109 9.248291 CAAATGCAGTTTACTTTGTGAATTAGT 57.752 29.630 0.00 0.00 0.00 2.24
109 110 9.816354 AAATGCAGTTTACTTTGTGAATTAGTT 57.184 25.926 0.00 0.00 0.00 2.24
110 111 9.816354 AATGCAGTTTACTTTGTGAATTAGTTT 57.184 25.926 0.00 0.00 0.00 2.66
112 113 9.944663 TGCAGTTTACTTTGTGAATTAGTTTAG 57.055 29.630 0.00 0.00 0.00 1.85
113 114 8.902735 GCAGTTTACTTTGTGAATTAGTTTAGC 58.097 33.333 0.00 0.00 0.00 3.09
114 115 9.394477 CAGTTTACTTTGTGAATTAGTTTAGCC 57.606 33.333 0.00 0.00 0.00 3.93
115 116 8.573885 AGTTTACTTTGTGAATTAGTTTAGCCC 58.426 33.333 0.00 0.00 0.00 5.19
116 117 5.977489 ACTTTGTGAATTAGTTTAGCCCC 57.023 39.130 0.00 0.00 0.00 5.80
117 118 4.457949 ACTTTGTGAATTAGTTTAGCCCCG 59.542 41.667 0.00 0.00 0.00 5.73
118 119 3.985019 TGTGAATTAGTTTAGCCCCGA 57.015 42.857 0.00 0.00 0.00 5.14
119 120 3.869065 TGTGAATTAGTTTAGCCCCGAG 58.131 45.455 0.00 0.00 0.00 4.63
120 121 3.203716 GTGAATTAGTTTAGCCCCGAGG 58.796 50.000 0.00 0.00 0.00 4.63
121 122 2.841881 TGAATTAGTTTAGCCCCGAGGT 59.158 45.455 0.00 0.00 34.57 3.85
122 123 3.118519 TGAATTAGTTTAGCCCCGAGGTC 60.119 47.826 0.00 0.00 34.57 3.85
123 124 1.941377 TTAGTTTAGCCCCGAGGTCA 58.059 50.000 0.00 0.00 34.57 4.02
124 125 1.941377 TAGTTTAGCCCCGAGGTCAA 58.059 50.000 0.00 0.00 34.57 3.18
125 126 1.061546 AGTTTAGCCCCGAGGTCAAA 58.938 50.000 0.00 0.00 34.57 2.69
126 127 1.633945 AGTTTAGCCCCGAGGTCAAAT 59.366 47.619 0.00 0.00 34.57 2.32
127 128 2.041216 AGTTTAGCCCCGAGGTCAAATT 59.959 45.455 0.00 0.00 34.57 1.82
128 129 2.823747 GTTTAGCCCCGAGGTCAAATTT 59.176 45.455 0.00 0.00 34.57 1.82
129 130 2.122783 TAGCCCCGAGGTCAAATTTG 57.877 50.000 12.15 12.15 34.57 2.32
130 131 0.112412 AGCCCCGAGGTCAAATTTGT 59.888 50.000 17.47 0.00 34.57 2.83
131 132 0.526211 GCCCCGAGGTCAAATTTGTC 59.474 55.000 17.47 12.07 34.57 3.18
132 133 1.904287 CCCCGAGGTCAAATTTGTCA 58.096 50.000 17.47 0.00 0.00 3.58
133 134 2.446435 CCCCGAGGTCAAATTTGTCAT 58.554 47.619 17.47 10.09 0.00 3.06
134 135 2.825532 CCCCGAGGTCAAATTTGTCATT 59.174 45.455 17.47 4.95 0.00 2.57
135 136 3.258123 CCCCGAGGTCAAATTTGTCATTT 59.742 43.478 17.47 2.62 0.00 2.32
136 137 4.262420 CCCCGAGGTCAAATTTGTCATTTT 60.262 41.667 17.47 0.33 0.00 1.82
137 138 5.296748 CCCGAGGTCAAATTTGTCATTTTT 58.703 37.500 17.47 0.00 0.00 1.94
138 139 5.177327 CCCGAGGTCAAATTTGTCATTTTTG 59.823 40.000 17.47 4.15 0.00 2.44
139 140 5.333263 CCGAGGTCAAATTTGTCATTTTTGC 60.333 40.000 17.47 0.00 31.88 3.68
140 141 5.333263 CGAGGTCAAATTTGTCATTTTTGCC 60.333 40.000 17.47 7.45 31.88 4.52
141 142 4.511082 AGGTCAAATTTGTCATTTTTGCCG 59.489 37.500 17.47 0.00 34.55 5.69
142 143 4.319405 GGTCAAATTTGTCATTTTTGCCGG 60.319 41.667 17.47 0.00 31.88 6.13
143 144 4.509600 GTCAAATTTGTCATTTTTGCCGGA 59.490 37.500 17.47 0.00 31.88 5.14
144 145 5.179182 GTCAAATTTGTCATTTTTGCCGGAT 59.821 36.000 17.47 0.00 31.88 4.18
145 146 6.367422 GTCAAATTTGTCATTTTTGCCGGATA 59.633 34.615 17.47 0.00 31.88 2.59
146 147 6.931281 TCAAATTTGTCATTTTTGCCGGATAA 59.069 30.769 17.47 0.00 31.88 1.75
147 148 6.966435 AATTTGTCATTTTTGCCGGATAAG 57.034 33.333 5.05 0.00 0.00 1.73
148 149 4.448537 TTGTCATTTTTGCCGGATAAGG 57.551 40.909 5.05 0.00 0.00 2.69
149 150 3.691575 TGTCATTTTTGCCGGATAAGGA 58.308 40.909 5.05 0.00 0.00 3.36
150 151 4.277476 TGTCATTTTTGCCGGATAAGGAT 58.723 39.130 5.05 0.00 0.00 3.24
151 152 4.097741 TGTCATTTTTGCCGGATAAGGATG 59.902 41.667 5.05 7.76 0.00 3.51
152 153 3.068024 TCATTTTTGCCGGATAAGGATGC 59.932 43.478 5.05 0.00 0.00 3.91
153 154 1.021202 TTTTGCCGGATAAGGATGCG 58.979 50.000 5.05 0.00 45.65 4.73
154 155 0.107410 TTTGCCGGATAAGGATGCGT 60.107 50.000 5.05 0.00 44.69 5.24
155 156 0.531974 TTGCCGGATAAGGATGCGTC 60.532 55.000 5.05 0.00 44.69 5.19
156 157 2.022129 GCCGGATAAGGATGCGTCG 61.022 63.158 5.05 0.00 44.69 5.12
157 158 2.022129 CCGGATAAGGATGCGTCGC 61.022 63.158 11.10 11.10 44.69 5.19
158 159 2.022129 CGGATAAGGATGCGTCGCC 61.022 63.158 15.88 0.00 41.56 5.54
159 160 1.069090 GGATAAGGATGCGTCGCCA 59.931 57.895 15.88 3.10 0.00 5.69
160 161 0.531974 GGATAAGGATGCGTCGCCAA 60.532 55.000 15.88 0.00 0.00 4.52
161 162 0.582005 GATAAGGATGCGTCGCCAAC 59.418 55.000 15.88 4.34 0.00 3.77
162 163 0.178068 ATAAGGATGCGTCGCCAACT 59.822 50.000 15.88 6.80 0.00 3.16
163 164 0.818938 TAAGGATGCGTCGCCAACTA 59.181 50.000 15.88 0.00 0.00 2.24
164 165 0.460284 AAGGATGCGTCGCCAACTAG 60.460 55.000 15.88 0.00 0.00 2.57
165 166 1.141019 GGATGCGTCGCCAACTAGA 59.859 57.895 15.88 0.00 0.00 2.43
166 167 0.872021 GGATGCGTCGCCAACTAGAG 60.872 60.000 15.88 0.00 0.00 2.43
167 168 1.483424 GATGCGTCGCCAACTAGAGC 61.483 60.000 15.88 0.00 0.00 4.09
168 169 2.886124 GCGTCGCCAACTAGAGCC 60.886 66.667 5.75 0.00 0.00 4.70
169 170 2.202756 CGTCGCCAACTAGAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
170 171 2.187163 GTCGCCAACTAGAGCCCC 59.813 66.667 0.00 0.00 0.00 5.80
171 172 3.081409 TCGCCAACTAGAGCCCCC 61.081 66.667 0.00 0.00 0.00 5.40
172 173 3.399181 CGCCAACTAGAGCCCCCA 61.399 66.667 0.00 0.00 0.00 4.96
173 174 2.272471 GCCAACTAGAGCCCCCAC 59.728 66.667 0.00 0.00 0.00 4.61
174 175 2.301738 GCCAACTAGAGCCCCCACT 61.302 63.158 0.00 0.00 0.00 4.00
175 176 1.853250 GCCAACTAGAGCCCCCACTT 61.853 60.000 0.00 0.00 0.00 3.16
176 177 0.253327 CCAACTAGAGCCCCCACTTC 59.747 60.000 0.00 0.00 0.00 3.01
177 178 0.108138 CAACTAGAGCCCCCACTTCG 60.108 60.000 0.00 0.00 0.00 3.79
178 179 0.252103 AACTAGAGCCCCCACTTCGA 60.252 55.000 0.00 0.00 0.00 3.71
179 180 0.971447 ACTAGAGCCCCCACTTCGAC 60.971 60.000 0.00 0.00 0.00 4.20
180 181 0.684805 CTAGAGCCCCCACTTCGACT 60.685 60.000 0.00 0.00 0.00 4.18
181 182 0.627451 TAGAGCCCCCACTTCGACTA 59.373 55.000 0.00 0.00 0.00 2.59
182 183 0.684805 AGAGCCCCCACTTCGACTAG 60.685 60.000 0.00 0.00 0.00 2.57
183 184 2.187163 GCCCCCACTTCGACTAGC 59.813 66.667 0.00 0.00 0.00 3.42
184 185 2.901042 CCCCCACTTCGACTAGCC 59.099 66.667 0.00 0.00 0.00 3.93
185 186 1.686110 CCCCCACTTCGACTAGCCT 60.686 63.158 0.00 0.00 0.00 4.58
186 187 1.517832 CCCCACTTCGACTAGCCTG 59.482 63.158 0.00 0.00 0.00 4.85
187 188 1.517832 CCCACTTCGACTAGCCTGG 59.482 63.158 0.00 0.00 0.00 4.45
188 189 1.153549 CCACTTCGACTAGCCTGGC 60.154 63.158 11.65 11.65 0.00 4.85
189 190 1.608717 CCACTTCGACTAGCCTGGCT 61.609 60.000 26.52 26.52 43.41 4.75
190 191 0.459237 CACTTCGACTAGCCTGGCTG 60.459 60.000 30.83 21.35 40.10 4.85
191 192 1.520342 CTTCGACTAGCCTGGCTGC 60.520 63.158 30.83 17.93 40.10 5.25
192 193 2.914777 CTTCGACTAGCCTGGCTGCC 62.915 65.000 30.83 12.87 40.10 4.85
193 194 3.774528 CGACTAGCCTGGCTGCCA 61.775 66.667 30.83 21.96 40.10 4.92
194 195 2.124942 GACTAGCCTGGCTGCCAC 60.125 66.667 30.83 9.44 40.10 5.01
195 196 4.087892 ACTAGCCTGGCTGCCACG 62.088 66.667 30.83 15.46 40.10 4.94
196 197 3.774528 CTAGCCTGGCTGCCACGA 61.775 66.667 30.83 9.00 40.10 4.35
197 198 3.083349 TAGCCTGGCTGCCACGAT 61.083 61.111 30.83 15.53 40.10 3.73
198 199 3.390183 TAGCCTGGCTGCCACGATG 62.390 63.158 30.83 8.06 40.10 3.84
217 218 9.912634 CCACGATGGCTAAATTCATTATATTTT 57.087 29.630 0.00 0.00 0.00 1.82
287 288 5.437191 TTCCTTTGGAAAGATAGGAGACC 57.563 43.478 0.47 0.00 38.93 3.85
288 289 4.435137 TCCTTTGGAAAGATAGGAGACCA 58.565 43.478 0.47 0.00 38.28 4.02
289 290 4.849810 TCCTTTGGAAAGATAGGAGACCAA 59.150 41.667 0.47 0.00 38.28 3.67
290 291 5.312178 TCCTTTGGAAAGATAGGAGACCAAA 59.688 40.000 0.00 0.00 42.46 3.28
292 293 6.448369 TTTGGAAAGATAGGAGACCAAAGA 57.552 37.500 0.00 0.00 40.73 2.52
293 294 6.448369 TTGGAAAGATAGGAGACCAAAGAA 57.552 37.500 0.00 0.00 35.03 2.52
294 295 6.448369 TGGAAAGATAGGAGACCAAAGAAA 57.552 37.500 0.00 0.00 0.00 2.52
295 296 6.848069 TGGAAAGATAGGAGACCAAAGAAAA 58.152 36.000 0.00 0.00 0.00 2.29
296 297 6.942576 TGGAAAGATAGGAGACCAAAGAAAAG 59.057 38.462 0.00 0.00 0.00 2.27
297 298 6.375736 GGAAAGATAGGAGACCAAAGAAAAGG 59.624 42.308 0.00 0.00 0.00 3.11
298 299 4.849518 AGATAGGAGACCAAAGAAAAGGC 58.150 43.478 0.00 0.00 0.00 4.35
299 300 4.289672 AGATAGGAGACCAAAGAAAAGGCA 59.710 41.667 0.00 0.00 0.00 4.75
300 301 2.868899 AGGAGACCAAAGAAAAGGCAG 58.131 47.619 0.00 0.00 0.00 4.85
301 302 1.889170 GGAGACCAAAGAAAAGGCAGG 59.111 52.381 0.00 0.00 0.00 4.85
302 303 2.587522 GAGACCAAAGAAAAGGCAGGT 58.412 47.619 0.00 0.00 0.00 4.00
303 304 2.294512 GAGACCAAAGAAAAGGCAGGTG 59.705 50.000 0.00 0.00 0.00 4.00
304 305 2.031870 GACCAAAGAAAAGGCAGGTGT 58.968 47.619 0.00 0.00 0.00 4.16
305 306 2.430694 GACCAAAGAAAAGGCAGGTGTT 59.569 45.455 0.00 0.00 0.00 3.32
306 307 2.430694 ACCAAAGAAAAGGCAGGTGTTC 59.569 45.455 0.00 0.00 0.00 3.18
307 308 2.430332 CCAAAGAAAAGGCAGGTGTTCA 59.570 45.455 0.00 0.00 0.00 3.18
308 309 3.118811 CCAAAGAAAAGGCAGGTGTTCAA 60.119 43.478 0.00 0.00 0.00 2.69
309 310 4.502962 CAAAGAAAAGGCAGGTGTTCAAA 58.497 39.130 0.00 0.00 0.00 2.69
310 311 4.391405 AAGAAAAGGCAGGTGTTCAAAG 57.609 40.909 0.00 0.00 0.00 2.77
311 312 2.695147 AGAAAAGGCAGGTGTTCAAAGG 59.305 45.455 0.00 0.00 0.00 3.11
312 313 2.159179 AAAGGCAGGTGTTCAAAGGT 57.841 45.000 0.00 0.00 0.00 3.50
313 314 1.402787 AAGGCAGGTGTTCAAAGGTG 58.597 50.000 0.00 0.00 0.00 4.00
314 315 1.109323 AGGCAGGTGTTCAAAGGTGC 61.109 55.000 0.00 0.00 0.00 5.01
315 316 1.391157 GGCAGGTGTTCAAAGGTGCA 61.391 55.000 0.00 0.00 32.42 4.57
316 317 0.249031 GCAGGTGTTCAAAGGTGCAC 60.249 55.000 8.80 8.80 0.00 4.57
318 319 1.739667 GGTGTTCAAAGGTGCACCC 59.260 57.895 32.29 16.11 43.96 4.61
319 320 1.358759 GTGTTCAAAGGTGCACCCG 59.641 57.895 32.29 20.60 38.74 5.28
320 321 1.098712 GTGTTCAAAGGTGCACCCGA 61.099 55.000 32.29 22.56 38.74 5.14
321 322 0.817634 TGTTCAAAGGTGCACCCGAG 60.818 55.000 32.29 20.98 38.74 4.63
322 323 1.896660 TTCAAAGGTGCACCCGAGC 60.897 57.895 32.29 7.14 38.74 5.03
323 324 3.365265 CAAAGGTGCACCCGAGCC 61.365 66.667 32.29 6.45 38.74 4.70
324 325 3.884774 AAAGGTGCACCCGAGCCA 61.885 61.111 32.29 0.00 38.74 4.75
325 326 4.643387 AAGGTGCACCCGAGCCAC 62.643 66.667 32.29 4.69 38.74 5.01
328 329 3.702048 GTGCACCCGAGCCACCTA 61.702 66.667 5.22 0.00 0.00 3.08
329 330 3.390521 TGCACCCGAGCCACCTAG 61.391 66.667 0.00 0.00 0.00 3.02
330 331 4.840005 GCACCCGAGCCACCTAGC 62.840 72.222 0.00 0.00 0.00 3.42
337 338 4.757773 AGCCACCTAGCTCACGTA 57.242 55.556 0.00 0.00 39.48 3.57
338 339 2.190756 AGCCACCTAGCTCACGTAC 58.809 57.895 0.00 0.00 39.48 3.67
339 340 0.323542 AGCCACCTAGCTCACGTACT 60.324 55.000 0.00 0.00 39.48 2.73
340 341 0.100861 GCCACCTAGCTCACGTACTC 59.899 60.000 0.00 0.00 0.00 2.59
341 342 0.739561 CCACCTAGCTCACGTACTCC 59.260 60.000 0.00 0.00 0.00 3.85
342 343 1.682394 CCACCTAGCTCACGTACTCCT 60.682 57.143 0.00 0.00 0.00 3.69
343 344 1.671845 CACCTAGCTCACGTACTCCTC 59.328 57.143 0.00 0.00 0.00 3.71
344 345 1.560611 ACCTAGCTCACGTACTCCTCT 59.439 52.381 0.00 0.00 0.00 3.69
345 346 2.215196 CCTAGCTCACGTACTCCTCTC 58.785 57.143 0.00 0.00 0.00 3.20
346 347 2.215196 CTAGCTCACGTACTCCTCTCC 58.785 57.143 0.00 0.00 0.00 3.71
347 348 0.745128 AGCTCACGTACTCCTCTCCG 60.745 60.000 0.00 0.00 0.00 4.63
348 349 1.025647 GCTCACGTACTCCTCTCCGT 61.026 60.000 0.00 0.00 0.00 4.69
349 350 1.451067 CTCACGTACTCCTCTCCGTT 58.549 55.000 0.00 0.00 0.00 4.44
350 351 2.625737 CTCACGTACTCCTCTCCGTTA 58.374 52.381 0.00 0.00 0.00 3.18
351 352 2.350522 TCACGTACTCCTCTCCGTTAC 58.649 52.381 0.00 0.00 0.00 2.50
352 353 2.079158 CACGTACTCCTCTCCGTTACA 58.921 52.381 0.00 0.00 0.00 2.41
353 354 2.095532 CACGTACTCCTCTCCGTTACAG 59.904 54.545 0.00 0.00 0.00 2.74
354 355 2.289945 ACGTACTCCTCTCCGTTACAGT 60.290 50.000 0.00 0.00 0.00 3.55
355 356 2.746362 CGTACTCCTCTCCGTTACAGTT 59.254 50.000 0.00 0.00 0.00 3.16
356 357 3.190118 CGTACTCCTCTCCGTTACAGTTT 59.810 47.826 0.00 0.00 0.00 2.66
357 358 4.393062 CGTACTCCTCTCCGTTACAGTTTA 59.607 45.833 0.00 0.00 0.00 2.01
358 359 4.780275 ACTCCTCTCCGTTACAGTTTAC 57.220 45.455 0.00 0.00 0.00 2.01
359 360 4.405548 ACTCCTCTCCGTTACAGTTTACT 58.594 43.478 0.00 0.00 0.00 2.24
360 361 4.458642 ACTCCTCTCCGTTACAGTTTACTC 59.541 45.833 0.00 0.00 0.00 2.59
361 362 4.660168 TCCTCTCCGTTACAGTTTACTCT 58.340 43.478 0.00 0.00 0.00 3.24
362 363 4.458295 TCCTCTCCGTTACAGTTTACTCTG 59.542 45.833 0.00 0.00 40.80 3.35
363 364 4.167268 CTCTCCGTTACAGTTTACTCTGC 58.833 47.826 0.00 0.00 38.84 4.26
364 365 2.915463 CTCCGTTACAGTTTACTCTGCG 59.085 50.000 0.00 0.00 38.84 5.18
365 366 2.294233 TCCGTTACAGTTTACTCTGCGT 59.706 45.455 0.00 0.00 38.84 5.24
366 367 2.660236 CCGTTACAGTTTACTCTGCGTC 59.340 50.000 0.00 0.00 38.84 5.19
367 368 3.562505 CGTTACAGTTTACTCTGCGTCT 58.437 45.455 0.00 0.00 38.84 4.18
368 369 4.378770 CCGTTACAGTTTACTCTGCGTCTA 60.379 45.833 0.00 0.00 38.84 2.59
369 370 5.149273 CGTTACAGTTTACTCTGCGTCTAA 58.851 41.667 0.00 0.00 38.84 2.10
370 371 5.058977 CGTTACAGTTTACTCTGCGTCTAAC 59.941 44.000 0.00 0.00 38.84 2.34
371 372 4.850347 ACAGTTTACTCTGCGTCTAACT 57.150 40.909 0.00 0.00 38.84 2.24
372 373 5.197682 ACAGTTTACTCTGCGTCTAACTT 57.802 39.130 0.00 0.00 38.84 2.66
373 374 5.598769 ACAGTTTACTCTGCGTCTAACTTT 58.401 37.500 0.00 0.00 38.84 2.66
374 375 6.047231 ACAGTTTACTCTGCGTCTAACTTTT 58.953 36.000 0.00 0.00 38.84 2.27
375 376 6.018994 ACAGTTTACTCTGCGTCTAACTTTTG 60.019 38.462 0.00 0.00 38.84 2.44
376 377 4.985044 TTACTCTGCGTCTAACTTTTGC 57.015 40.909 0.00 0.00 0.00 3.68
377 378 3.113260 ACTCTGCGTCTAACTTTTGCT 57.887 42.857 0.00 0.00 0.00 3.91
378 379 3.467803 ACTCTGCGTCTAACTTTTGCTT 58.532 40.909 0.00 0.00 0.00 3.91
379 380 3.877508 ACTCTGCGTCTAACTTTTGCTTT 59.122 39.130 0.00 0.00 0.00 3.51
380 381 4.024809 ACTCTGCGTCTAACTTTTGCTTTC 60.025 41.667 0.00 0.00 0.00 2.62
381 382 4.127171 TCTGCGTCTAACTTTTGCTTTCT 58.873 39.130 0.00 0.00 0.00 2.52
382 383 4.211374 TCTGCGTCTAACTTTTGCTTTCTC 59.789 41.667 0.00 0.00 0.00 2.87
383 384 3.250040 TGCGTCTAACTTTTGCTTTCTCC 59.750 43.478 0.00 0.00 0.00 3.71
384 385 3.664537 GCGTCTAACTTTTGCTTTCTCCG 60.665 47.826 0.00 0.00 0.00 4.63
385 386 3.493503 CGTCTAACTTTTGCTTTCTCCGT 59.506 43.478 0.00 0.00 0.00 4.69
386 387 4.025145 CGTCTAACTTTTGCTTTCTCCGTT 60.025 41.667 0.00 0.00 0.00 4.44
387 388 5.503520 CGTCTAACTTTTGCTTTCTCCGTTT 60.504 40.000 0.00 0.00 0.00 3.60
388 389 5.907945 GTCTAACTTTTGCTTTCTCCGTTTC 59.092 40.000 0.00 0.00 0.00 2.78
389 390 4.983671 AACTTTTGCTTTCTCCGTTTCT 57.016 36.364 0.00 0.00 0.00 2.52
390 391 6.987992 TCTAACTTTTGCTTTCTCCGTTTCTA 59.012 34.615 0.00 0.00 0.00 2.10
391 392 6.445357 AACTTTTGCTTTCTCCGTTTCTAA 57.555 33.333 0.00 0.00 0.00 2.10
392 393 6.445357 ACTTTTGCTTTCTCCGTTTCTAAA 57.555 33.333 0.00 0.00 0.00 1.85
393 394 7.039313 ACTTTTGCTTTCTCCGTTTCTAAAT 57.961 32.000 0.00 0.00 0.00 1.40
394 395 8.161699 ACTTTTGCTTTCTCCGTTTCTAAATA 57.838 30.769 0.00 0.00 0.00 1.40
395 396 8.626526 ACTTTTGCTTTCTCCGTTTCTAAATAA 58.373 29.630 0.00 0.00 0.00 1.40
396 397 9.626045 CTTTTGCTTTCTCCGTTTCTAAATAAT 57.374 29.630 0.00 0.00 0.00 1.28
400 401 9.661563 TGCTTTCTCCGTTTCTAAATAATAAGA 57.338 29.630 0.00 0.00 0.00 2.10
401 402 9.917872 GCTTTCTCCGTTTCTAAATAATAAGAC 57.082 33.333 0.00 0.00 0.00 3.01
403 404 9.643693 TTTCTCCGTTTCTAAATAATAAGACGT 57.356 29.630 0.00 0.00 0.00 4.34
404 405 9.643693 TTCTCCGTTTCTAAATAATAAGACGTT 57.356 29.630 0.00 0.00 0.00 3.99
405 406 9.643693 TCTCCGTTTCTAAATAATAAGACGTTT 57.356 29.630 0.00 0.00 0.00 3.60
408 409 9.815936 CCGTTTCTAAATAATAAGACGTTTTGT 57.184 29.630 0.83 0.00 0.00 2.83
427 428 9.720569 CGTTTTGTCATTTTATAAATTGAACCG 57.279 29.630 19.30 14.11 32.19 4.44
430 431 9.967346 TTTGTCATTTTATAAATTGAACCGTCA 57.033 25.926 19.30 12.41 32.19 4.35
432 433 9.619316 TGTCATTTTATAAATTGAACCGTCAAG 57.381 29.630 19.30 0.00 46.75 3.02
433 434 9.834628 GTCATTTTATAAATTGAACCGTCAAGA 57.165 29.630 19.30 0.00 46.75 3.02
434 435 9.834628 TCATTTTATAAATTGAACCGTCAAGAC 57.165 29.630 16.61 0.00 46.75 3.01
554 555 6.980416 ACTCTCTGGACAATAGTTATACCC 57.020 41.667 0.00 0.00 0.00 3.69
555 556 6.684538 ACTCTCTGGACAATAGTTATACCCT 58.315 40.000 0.00 0.00 0.00 4.34
556 557 6.778559 ACTCTCTGGACAATAGTTATACCCTC 59.221 42.308 0.00 0.00 0.00 4.30
557 558 6.923670 TCTCTGGACAATAGTTATACCCTCT 58.076 40.000 0.00 0.00 0.00 3.69
558 559 6.778069 TCTCTGGACAATAGTTATACCCTCTG 59.222 42.308 0.00 0.00 0.00 3.35
559 560 6.441222 TCTGGACAATAGTTATACCCTCTGT 58.559 40.000 0.00 0.00 0.00 3.41
560 561 6.550108 TCTGGACAATAGTTATACCCTCTGTC 59.450 42.308 0.00 0.00 32.94 3.51
561 562 6.199376 TGGACAATAGTTATACCCTCTGTCA 58.801 40.000 0.00 0.00 34.89 3.58
562 563 6.844388 TGGACAATAGTTATACCCTCTGTCAT 59.156 38.462 0.00 0.00 34.89 3.06
563 564 8.008332 TGGACAATAGTTATACCCTCTGTCATA 58.992 37.037 0.00 0.00 34.89 2.15
564 565 8.867097 GGACAATAGTTATACCCTCTGTCATAA 58.133 37.037 0.00 0.00 34.89 1.90
567 568 9.574458 CAATAGTTATACCCTCTGTCATAATCG 57.426 37.037 0.00 0.00 0.00 3.34
568 569 9.529823 AATAGTTATACCCTCTGTCATAATCGA 57.470 33.333 0.00 0.00 0.00 3.59
569 570 7.216973 AGTTATACCCTCTGTCATAATCGAC 57.783 40.000 0.00 0.00 36.40 4.20
570 571 7.005296 AGTTATACCCTCTGTCATAATCGACT 58.995 38.462 0.00 0.00 36.82 4.18
571 572 7.506261 AGTTATACCCTCTGTCATAATCGACTT 59.494 37.037 0.00 0.00 36.82 3.01
572 573 6.732896 ATACCCTCTGTCATAATCGACTTT 57.267 37.500 0.00 0.00 36.82 2.66
573 574 5.422214 ACCCTCTGTCATAATCGACTTTT 57.578 39.130 0.00 0.00 36.82 2.27
574 575 5.178797 ACCCTCTGTCATAATCGACTTTTG 58.821 41.667 0.00 0.00 36.82 2.44
575 576 5.178797 CCCTCTGTCATAATCGACTTTTGT 58.821 41.667 0.00 0.00 36.82 2.83
576 577 5.643777 CCCTCTGTCATAATCGACTTTTGTT 59.356 40.000 0.00 0.00 36.82 2.83
577 578 6.183360 CCCTCTGTCATAATCGACTTTTGTTC 60.183 42.308 0.00 0.00 36.82 3.18
578 579 6.591834 CCTCTGTCATAATCGACTTTTGTTCT 59.408 38.462 0.00 0.00 36.82 3.01
579 580 7.759886 CCTCTGTCATAATCGACTTTTGTTCTA 59.240 37.037 0.00 0.00 36.82 2.10
580 581 9.307121 CTCTGTCATAATCGACTTTTGTTCTAT 57.693 33.333 0.00 0.00 36.82 1.98
581 582 9.653287 TCTGTCATAATCGACTTTTGTTCTATT 57.347 29.630 0.00 0.00 36.82 1.73
582 583 9.907576 CTGTCATAATCGACTTTTGTTCTATTC 57.092 33.333 0.00 0.00 36.82 1.75
583 584 9.653287 TGTCATAATCGACTTTTGTTCTATTCT 57.347 29.630 0.00 0.00 36.82 2.40
585 586 9.869757 TCATAATCGACTTTTGTTCTATTCTCA 57.130 29.630 0.00 0.00 0.00 3.27
586 587 9.907576 CATAATCGACTTTTGTTCTATTCTCAC 57.092 33.333 0.00 0.00 0.00 3.51
587 588 6.633668 ATCGACTTTTGTTCTATTCTCACG 57.366 37.500 0.00 0.00 0.00 4.35
588 589 5.765176 TCGACTTTTGTTCTATTCTCACGA 58.235 37.500 0.00 0.00 0.00 4.35
589 590 6.210796 TCGACTTTTGTTCTATTCTCACGAA 58.789 36.000 0.00 0.00 0.00 3.85
590 591 6.866770 TCGACTTTTGTTCTATTCTCACGAAT 59.133 34.615 0.00 0.00 42.34 3.34
591 592 7.061905 TCGACTTTTGTTCTATTCTCACGAATC 59.938 37.037 0.00 0.00 40.28 2.52
592 593 7.148804 CGACTTTTGTTCTATTCTCACGAATCA 60.149 37.037 0.00 0.00 40.28 2.57
593 594 8.553459 ACTTTTGTTCTATTCTCACGAATCAT 57.447 30.769 0.00 0.00 40.28 2.45
594 595 9.653287 ACTTTTGTTCTATTCTCACGAATCATA 57.347 29.630 0.00 0.00 40.28 2.15
633 634 3.571590 TCATTTTGCCCTTAGTGGTGTT 58.428 40.909 0.00 0.00 0.00 3.32
666 667 2.678471 TTGCTCTCAGATGCGAATCA 57.322 45.000 6.08 0.00 0.00 2.57
702 703 2.372040 TAGTCCGTGCGCACCAACTT 62.372 55.000 33.88 22.68 0.00 2.66
712 713 1.003545 CGCACCAACTTGTTCTGTGAG 60.004 52.381 13.51 8.54 0.00 3.51
771 772 3.533079 TACAGGTGGGACCAGGCGA 62.533 63.158 0.00 0.00 41.95 5.54
777 778 4.459089 GGGACCAGGCGACAGAGC 62.459 72.222 0.00 0.00 0.00 4.09
911 961 4.103103 CGGCGACAGAGAGCACGA 62.103 66.667 0.00 0.00 34.54 4.35
984 1081 2.668632 GTGGCGTTGAGATCCCCA 59.331 61.111 0.00 0.00 0.00 4.96
1025 1122 4.845580 CTCAAGCTCCCGCGCCAT 62.846 66.667 0.00 0.00 42.32 4.40
1173 1271 2.364324 CGAGAATGGGGTAAGAATCGGA 59.636 50.000 0.00 0.00 0.00 4.55
1257 1356 3.254166 TGCAGGTGAAATGCTTCTTTCTC 59.746 43.478 0.00 5.17 44.17 2.87
1268 1367 2.093973 GCTTCTTTCTCTGGGTCGATGA 60.094 50.000 0.00 0.00 0.00 2.92
1406 1507 2.616376 CACGCACTGATAGAGAGCTAGT 59.384 50.000 0.00 0.00 36.21 2.57
1471 1572 8.523915 TGAAGATCAAGCACAAATACCAATAT 57.476 30.769 0.00 0.00 0.00 1.28
1536 1637 6.017026 TCGCACTGGTTGTAATGTTGAAATTA 60.017 34.615 0.00 0.00 0.00 1.40
1631 1732 9.877178 ATGTTGGTCAAAGTTGTTTAAATGTTA 57.123 25.926 0.00 0.00 0.00 2.41
1716 1832 7.966246 AACTTTTAATCAATGAAATGCAGCA 57.034 28.000 0.00 0.00 0.00 4.41
1768 1888 0.890683 CCTCTGTGGGCCAAATTCAC 59.109 55.000 8.40 3.18 0.00 3.18
1850 1985 2.227865 GGGCTCTATTGCGTGTTTTTCA 59.772 45.455 0.00 0.00 0.00 2.69
2223 2371 2.671619 GTGGCGTTTAGGGCTGCA 60.672 61.111 0.50 0.00 0.00 4.41
2267 2415 4.104102 TGGAAAGACTTTGACATGGGTAGT 59.896 41.667 4.85 0.00 0.00 2.73
2320 2564 5.105957 TGTTTGTACTGAATGTTTGCACACT 60.106 36.000 4.37 0.00 35.03 3.55
2416 2668 3.569194 TTTGGTTAGAGTGGCACTTGA 57.431 42.857 22.98 10.01 0.00 3.02
2491 2852 5.070847 GGGAAGAAATGATATGTTTGGGCAT 59.929 40.000 0.00 0.00 0.00 4.40
2502 2863 4.963318 TGTTTGGGCATGGACATTTTTA 57.037 36.364 0.00 0.00 0.00 1.52
2504 2865 5.059833 TGTTTGGGCATGGACATTTTTAAC 58.940 37.500 0.00 0.00 0.00 2.01
2505 2866 4.963318 TTGGGCATGGACATTTTTAACA 57.037 36.364 0.00 0.00 0.00 2.41
2506 2867 4.264460 TGGGCATGGACATTTTTAACAC 57.736 40.909 0.00 0.00 0.00 3.32
2545 2970 2.351548 CGACACGACACGACACGT 60.352 61.111 0.00 0.00 42.36 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.117171 GCAGCGCCTGACTGACAG 61.117 66.667 2.29 0.00 45.36 3.51
2 3 3.418068 GTGCAGCGCCTGACTGAC 61.418 66.667 2.29 0.00 37.32 3.51
4 5 3.420606 CTGTGCAGCGCCTGACTG 61.421 66.667 2.29 0.00 38.22 3.51
6 7 3.720193 CACTGTGCAGCGCCTGAC 61.720 66.667 2.29 0.00 32.44 3.51
8 9 3.720193 GACACTGTGCAGCGCCTG 61.720 66.667 2.29 2.69 34.12 4.85
11 12 4.360027 CACGACACTGTGCAGCGC 62.360 66.667 7.90 0.00 32.31 5.92
17 18 4.046998 GCGTCGCACGACACTGTG 62.047 66.667 21.66 6.19 46.05 3.66
24 25 2.126618 CAACTAGGCGTCGCACGA 60.127 61.111 20.50 4.05 46.05 4.35
25 26 2.430244 ACAACTAGGCGTCGCACG 60.430 61.111 20.50 8.75 45.88 5.34
26 27 1.344942 CTGACAACTAGGCGTCGCAC 61.345 60.000 20.50 8.57 34.78 5.34
27 28 1.080772 CTGACAACTAGGCGTCGCA 60.081 57.895 20.50 0.00 34.78 5.10
28 29 1.805945 CCTGACAACTAGGCGTCGC 60.806 63.158 9.22 9.22 34.78 5.19
29 30 4.478195 CCTGACAACTAGGCGTCG 57.522 61.111 8.69 0.00 34.78 5.12
34 35 2.103042 GCAGCGCCTGACAACTAGG 61.103 63.158 2.29 0.00 38.39 3.02
35 36 1.374631 TGCAGCGCCTGACAACTAG 60.375 57.895 2.29 0.00 32.44 2.57
36 37 1.667830 GTGCAGCGCCTGACAACTA 60.668 57.895 2.29 0.00 32.44 2.24
37 38 2.974698 GTGCAGCGCCTGACAACT 60.975 61.111 2.29 0.00 32.44 3.16
38 39 2.335052 TTTGTGCAGCGCCTGACAAC 62.335 55.000 13.49 7.60 34.22 3.32
39 40 1.661498 TTTTGTGCAGCGCCTGACAA 61.661 50.000 2.29 7.76 33.40 3.18
40 41 2.062361 CTTTTGTGCAGCGCCTGACA 62.062 55.000 2.29 0.39 32.44 3.58
41 42 1.370900 CTTTTGTGCAGCGCCTGAC 60.371 57.895 2.29 0.00 32.44 3.51
42 43 2.554636 CCTTTTGTGCAGCGCCTGA 61.555 57.895 2.29 0.00 32.44 3.86
43 44 2.049802 CCTTTTGTGCAGCGCCTG 60.050 61.111 2.29 2.69 34.12 4.85
44 45 3.297620 CCCTTTTGTGCAGCGCCT 61.298 61.111 2.29 0.00 0.00 5.52
45 46 1.801309 TAACCCTTTTGTGCAGCGCC 61.801 55.000 2.29 0.00 0.00 6.53
46 47 0.387239 CTAACCCTTTTGTGCAGCGC 60.387 55.000 0.00 0.00 0.00 5.92
47 48 0.387239 GCTAACCCTTTTGTGCAGCG 60.387 55.000 0.00 0.00 0.00 5.18
48 49 0.038251 GGCTAACCCTTTTGTGCAGC 60.038 55.000 0.00 0.00 0.00 5.25
49 50 0.240945 CGGCTAACCCTTTTGTGCAG 59.759 55.000 0.00 0.00 0.00 4.41
50 51 0.179015 TCGGCTAACCCTTTTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
51 52 0.521735 CTCGGCTAACCCTTTTGTGC 59.478 55.000 0.00 0.00 0.00 4.57
52 53 1.535462 CACTCGGCTAACCCTTTTGTG 59.465 52.381 0.00 0.00 0.00 3.33
53 54 1.418637 TCACTCGGCTAACCCTTTTGT 59.581 47.619 0.00 0.00 0.00 2.83
54 55 2.178912 TCACTCGGCTAACCCTTTTG 57.821 50.000 0.00 0.00 0.00 2.44
55 56 2.943036 TTCACTCGGCTAACCCTTTT 57.057 45.000 0.00 0.00 0.00 2.27
56 57 2.943036 TTTCACTCGGCTAACCCTTT 57.057 45.000 0.00 0.00 0.00 3.11
57 58 3.434940 AATTTCACTCGGCTAACCCTT 57.565 42.857 0.00 0.00 0.00 3.95
58 59 3.434940 AAATTTCACTCGGCTAACCCT 57.565 42.857 0.00 0.00 0.00 4.34
59 60 4.514781 AAAAATTTCACTCGGCTAACCC 57.485 40.909 0.00 0.00 0.00 4.11
77 78 8.539770 TCACAAAGTAAACTGCATTTGAAAAA 57.460 26.923 13.60 0.00 36.41 1.94
78 79 8.539770 TTCACAAAGTAAACTGCATTTGAAAA 57.460 26.923 13.60 5.86 36.41 2.29
79 80 8.715191 ATTCACAAAGTAAACTGCATTTGAAA 57.285 26.923 13.60 8.46 36.41 2.69
80 81 8.715191 AATTCACAAAGTAAACTGCATTTGAA 57.285 26.923 13.60 1.51 36.41 2.69
81 82 9.462174 CTAATTCACAAAGTAAACTGCATTTGA 57.538 29.630 13.60 0.00 36.41 2.69
82 83 9.248291 ACTAATTCACAAAGTAAACTGCATTTG 57.752 29.630 6.65 6.65 38.35 2.32
83 84 9.816354 AACTAATTCACAAAGTAAACTGCATTT 57.184 25.926 0.00 0.00 0.00 2.32
84 85 9.816354 AAACTAATTCACAAAGTAAACTGCATT 57.184 25.926 0.00 0.00 0.00 3.56
86 87 9.944663 CTAAACTAATTCACAAAGTAAACTGCA 57.055 29.630 0.00 0.00 0.00 4.41
87 88 8.902735 GCTAAACTAATTCACAAAGTAAACTGC 58.097 33.333 0.00 0.00 0.00 4.40
88 89 9.394477 GGCTAAACTAATTCACAAAGTAAACTG 57.606 33.333 0.00 0.00 0.00 3.16
89 90 8.573885 GGGCTAAACTAATTCACAAAGTAAACT 58.426 33.333 0.00 0.00 0.00 2.66
90 91 7.811236 GGGGCTAAACTAATTCACAAAGTAAAC 59.189 37.037 0.00 0.00 0.00 2.01
91 92 7.308710 CGGGGCTAAACTAATTCACAAAGTAAA 60.309 37.037 0.00 0.00 0.00 2.01
92 93 6.149807 CGGGGCTAAACTAATTCACAAAGTAA 59.850 38.462 0.00 0.00 0.00 2.24
93 94 5.644636 CGGGGCTAAACTAATTCACAAAGTA 59.355 40.000 0.00 0.00 0.00 2.24
94 95 4.457949 CGGGGCTAAACTAATTCACAAAGT 59.542 41.667 0.00 0.00 0.00 2.66
95 96 4.698304 TCGGGGCTAAACTAATTCACAAAG 59.302 41.667 0.00 0.00 0.00 2.77
96 97 4.653868 TCGGGGCTAAACTAATTCACAAA 58.346 39.130 0.00 0.00 0.00 2.83
97 98 4.258543 CTCGGGGCTAAACTAATTCACAA 58.741 43.478 0.00 0.00 0.00 3.33
98 99 3.370103 CCTCGGGGCTAAACTAATTCACA 60.370 47.826 0.00 0.00 0.00 3.58
99 100 3.203716 CCTCGGGGCTAAACTAATTCAC 58.796 50.000 0.00 0.00 0.00 3.18
100 101 2.841881 ACCTCGGGGCTAAACTAATTCA 59.158 45.455 0.00 0.00 35.63 2.57
101 102 3.118519 TGACCTCGGGGCTAAACTAATTC 60.119 47.826 0.00 0.00 35.63 2.17
102 103 2.841881 TGACCTCGGGGCTAAACTAATT 59.158 45.455 0.00 0.00 35.63 1.40
103 104 2.474112 TGACCTCGGGGCTAAACTAAT 58.526 47.619 0.00 0.00 35.63 1.73
104 105 1.941377 TGACCTCGGGGCTAAACTAA 58.059 50.000 0.00 0.00 35.63 2.24
105 106 1.941377 TTGACCTCGGGGCTAAACTA 58.059 50.000 0.00 0.00 35.63 2.24
106 107 1.061546 TTTGACCTCGGGGCTAAACT 58.938 50.000 0.00 0.00 35.63 2.66
107 108 2.124277 ATTTGACCTCGGGGCTAAAC 57.876 50.000 0.00 0.00 35.63 2.01
108 109 2.823154 CAAATTTGACCTCGGGGCTAAA 59.177 45.455 13.08 3.12 35.63 1.85
109 110 2.224917 ACAAATTTGACCTCGGGGCTAA 60.225 45.455 24.64 0.00 35.63 3.09
110 111 1.353022 ACAAATTTGACCTCGGGGCTA 59.647 47.619 24.64 0.00 35.63 3.93
111 112 0.112412 ACAAATTTGACCTCGGGGCT 59.888 50.000 24.64 0.00 35.63 5.19
112 113 0.526211 GACAAATTTGACCTCGGGGC 59.474 55.000 24.64 0.00 35.63 5.80
113 114 1.904287 TGACAAATTTGACCTCGGGG 58.096 50.000 24.64 0.00 38.88 5.73
114 115 4.519540 AAATGACAAATTTGACCTCGGG 57.480 40.909 24.64 0.00 0.00 5.14
115 116 5.333263 GCAAAAATGACAAATTTGACCTCGG 60.333 40.000 24.64 7.87 36.41 4.63
116 117 5.333263 GGCAAAAATGACAAATTTGACCTCG 60.333 40.000 24.64 6.26 36.32 4.63
117 118 5.333263 CGGCAAAAATGACAAATTTGACCTC 60.333 40.000 24.64 12.14 38.55 3.85
118 119 4.511082 CGGCAAAAATGACAAATTTGACCT 59.489 37.500 24.64 8.80 38.55 3.85
119 120 4.319405 CCGGCAAAAATGACAAATTTGACC 60.319 41.667 24.64 15.06 38.55 4.02
120 121 4.509600 TCCGGCAAAAATGACAAATTTGAC 59.490 37.500 24.64 18.43 38.43 3.18
121 122 4.697514 TCCGGCAAAAATGACAAATTTGA 58.302 34.783 24.64 3.48 36.41 2.69
122 123 5.610235 ATCCGGCAAAAATGACAAATTTG 57.390 34.783 16.67 16.67 37.17 2.32
123 124 6.371271 CCTTATCCGGCAAAAATGACAAATTT 59.629 34.615 0.00 0.00 0.00 1.82
124 125 5.874261 CCTTATCCGGCAAAAATGACAAATT 59.126 36.000 0.00 0.00 0.00 1.82
125 126 5.186797 TCCTTATCCGGCAAAAATGACAAAT 59.813 36.000 0.00 0.00 0.00 2.32
126 127 4.524714 TCCTTATCCGGCAAAAATGACAAA 59.475 37.500 0.00 0.00 0.00 2.83
127 128 4.082845 TCCTTATCCGGCAAAAATGACAA 58.917 39.130 0.00 0.00 0.00 3.18
128 129 3.691575 TCCTTATCCGGCAAAAATGACA 58.308 40.909 0.00 0.00 0.00 3.58
129 130 4.610945 CATCCTTATCCGGCAAAAATGAC 58.389 43.478 0.00 0.00 0.00 3.06
130 131 3.068024 GCATCCTTATCCGGCAAAAATGA 59.932 43.478 0.00 0.00 0.00 2.57
131 132 3.383761 GCATCCTTATCCGGCAAAAATG 58.616 45.455 0.00 1.92 0.00 2.32
132 133 2.034558 CGCATCCTTATCCGGCAAAAAT 59.965 45.455 0.00 0.00 0.00 1.82
133 134 1.403679 CGCATCCTTATCCGGCAAAAA 59.596 47.619 0.00 0.00 0.00 1.94
134 135 1.021202 CGCATCCTTATCCGGCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
135 136 0.107410 ACGCATCCTTATCCGGCAAA 60.107 50.000 0.00 0.00 0.00 3.68
136 137 0.531974 GACGCATCCTTATCCGGCAA 60.532 55.000 0.00 0.00 0.00 4.52
137 138 1.069090 GACGCATCCTTATCCGGCA 59.931 57.895 0.00 0.00 0.00 5.69
138 139 2.022129 CGACGCATCCTTATCCGGC 61.022 63.158 0.00 0.00 0.00 6.13
139 140 2.022129 GCGACGCATCCTTATCCGG 61.022 63.158 16.42 0.00 0.00 5.14
140 141 2.022129 GGCGACGCATCCTTATCCG 61.022 63.158 23.09 0.00 0.00 4.18
141 142 0.531974 TTGGCGACGCATCCTTATCC 60.532 55.000 23.09 0.76 0.00 2.59
142 143 0.582005 GTTGGCGACGCATCCTTATC 59.418 55.000 23.09 1.55 0.00 1.75
143 144 0.178068 AGTTGGCGACGCATCCTTAT 59.822 50.000 23.09 0.00 0.00 1.73
144 145 0.818938 TAGTTGGCGACGCATCCTTA 59.181 50.000 23.09 4.29 0.00 2.69
145 146 0.460284 CTAGTTGGCGACGCATCCTT 60.460 55.000 23.09 5.30 0.00 3.36
146 147 1.141881 CTAGTTGGCGACGCATCCT 59.858 57.895 23.09 14.96 0.00 3.24
147 148 0.872021 CTCTAGTTGGCGACGCATCC 60.872 60.000 23.09 7.95 0.00 3.51
148 149 1.483424 GCTCTAGTTGGCGACGCATC 61.483 60.000 23.09 10.84 0.00 3.91
149 150 1.519455 GCTCTAGTTGGCGACGCAT 60.519 57.895 23.09 6.74 0.00 4.73
150 151 2.126071 GCTCTAGTTGGCGACGCA 60.126 61.111 23.09 4.94 0.00 5.24
151 152 2.886124 GGCTCTAGTTGGCGACGC 60.886 66.667 12.43 12.43 0.00 5.19
152 153 2.202756 GGGCTCTAGTTGGCGACG 60.203 66.667 0.00 0.00 0.00 5.12
153 154 2.187163 GGGGCTCTAGTTGGCGAC 59.813 66.667 0.00 0.00 0.00 5.19
154 155 3.081409 GGGGGCTCTAGTTGGCGA 61.081 66.667 0.00 0.00 0.00 5.54
155 156 3.399181 TGGGGGCTCTAGTTGGCG 61.399 66.667 0.00 0.00 0.00 5.69
156 157 1.853250 AAGTGGGGGCTCTAGTTGGC 61.853 60.000 0.00 0.00 0.00 4.52
157 158 0.253327 GAAGTGGGGGCTCTAGTTGG 59.747 60.000 0.00 0.00 0.00 3.77
158 159 0.108138 CGAAGTGGGGGCTCTAGTTG 60.108 60.000 0.00 0.00 0.00 3.16
159 160 0.252103 TCGAAGTGGGGGCTCTAGTT 60.252 55.000 0.00 0.00 0.00 2.24
160 161 0.971447 GTCGAAGTGGGGGCTCTAGT 60.971 60.000 0.00 0.00 0.00 2.57
161 162 0.684805 AGTCGAAGTGGGGGCTCTAG 60.685 60.000 0.00 0.00 0.00 2.43
162 163 0.627451 TAGTCGAAGTGGGGGCTCTA 59.373 55.000 0.00 0.00 0.00 2.43
163 164 0.684805 CTAGTCGAAGTGGGGGCTCT 60.685 60.000 0.00 0.00 0.00 4.09
164 165 1.817209 CTAGTCGAAGTGGGGGCTC 59.183 63.158 0.00 0.00 0.00 4.70
165 166 2.359967 GCTAGTCGAAGTGGGGGCT 61.360 63.158 0.00 0.00 0.00 5.19
166 167 2.187163 GCTAGTCGAAGTGGGGGC 59.813 66.667 0.00 0.00 0.00 5.80
167 168 1.686110 AGGCTAGTCGAAGTGGGGG 60.686 63.158 0.00 0.00 0.00 5.40
168 169 1.517832 CAGGCTAGTCGAAGTGGGG 59.482 63.158 0.00 0.00 0.00 4.96
169 170 1.517832 CCAGGCTAGTCGAAGTGGG 59.482 63.158 0.00 0.00 0.00 4.61
170 171 1.153549 GCCAGGCTAGTCGAAGTGG 60.154 63.158 3.29 0.00 0.00 4.00
171 172 0.459237 CAGCCAGGCTAGTCGAAGTG 60.459 60.000 15.64 0.00 36.40 3.16
172 173 1.893786 CAGCCAGGCTAGTCGAAGT 59.106 57.895 15.64 0.00 36.40 3.01
173 174 1.520342 GCAGCCAGGCTAGTCGAAG 60.520 63.158 15.64 0.10 36.40 3.79
174 175 2.579201 GCAGCCAGGCTAGTCGAA 59.421 61.111 15.64 0.00 36.40 3.71
175 176 3.461773 GGCAGCCAGGCTAGTCGA 61.462 66.667 15.64 0.00 36.40 4.20
176 177 3.774528 TGGCAGCCAGGCTAGTCG 61.775 66.667 15.64 2.27 44.55 4.18
177 178 2.124942 GTGGCAGCCAGGCTAGTC 60.125 66.667 16.83 11.07 44.55 2.59
178 179 4.087892 CGTGGCAGCCAGGCTAGT 62.088 66.667 20.95 0.00 44.55 2.57
179 180 3.099211 ATCGTGGCAGCCAGGCTAG 62.099 63.158 26.64 10.10 44.55 3.42
180 181 3.083349 ATCGTGGCAGCCAGGCTA 61.083 61.111 26.64 13.04 44.55 3.93
181 182 4.790962 CATCGTGGCAGCCAGGCT 62.791 66.667 26.64 16.46 44.55 4.58
191 192 9.912634 AAAATATAATGAATTTAGCCATCGTGG 57.087 29.630 0.25 0.25 41.55 4.94
265 266 4.849810 TGGTCTCCTATCTTTCCAAAGGAA 59.150 41.667 0.00 0.00 40.27 3.36
266 267 4.435137 TGGTCTCCTATCTTTCCAAAGGA 58.565 43.478 0.00 0.00 36.67 3.36
267 268 4.844349 TGGTCTCCTATCTTTCCAAAGG 57.156 45.455 0.00 0.00 36.67 3.11
269 270 6.448369 TCTTTGGTCTCCTATCTTTCCAAA 57.552 37.500 0.00 0.00 40.88 3.28
270 271 6.448369 TTCTTTGGTCTCCTATCTTTCCAA 57.552 37.500 0.00 0.00 33.90 3.53
271 272 6.448369 TTTCTTTGGTCTCCTATCTTTCCA 57.552 37.500 0.00 0.00 0.00 3.53
272 273 6.375736 CCTTTTCTTTGGTCTCCTATCTTTCC 59.624 42.308 0.00 0.00 0.00 3.13
273 274 6.127869 GCCTTTTCTTTGGTCTCCTATCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
274 275 5.712446 GCCTTTTCTTTGGTCTCCTATCTTT 59.288 40.000 0.00 0.00 0.00 2.52
275 276 5.222130 TGCCTTTTCTTTGGTCTCCTATCTT 60.222 40.000 0.00 0.00 0.00 2.40
276 277 4.289672 TGCCTTTTCTTTGGTCTCCTATCT 59.710 41.667 0.00 0.00 0.00 1.98
277 278 4.589908 TGCCTTTTCTTTGGTCTCCTATC 58.410 43.478 0.00 0.00 0.00 2.08
278 279 4.568592 CCTGCCTTTTCTTTGGTCTCCTAT 60.569 45.833 0.00 0.00 0.00 2.57
279 280 3.244911 CCTGCCTTTTCTTTGGTCTCCTA 60.245 47.826 0.00 0.00 0.00 2.94
280 281 2.489802 CCTGCCTTTTCTTTGGTCTCCT 60.490 50.000 0.00 0.00 0.00 3.69
281 282 1.889170 CCTGCCTTTTCTTTGGTCTCC 59.111 52.381 0.00 0.00 0.00 3.71
282 283 2.294512 CACCTGCCTTTTCTTTGGTCTC 59.705 50.000 0.00 0.00 0.00 3.36
283 284 2.310538 CACCTGCCTTTTCTTTGGTCT 58.689 47.619 0.00 0.00 0.00 3.85
284 285 2.031870 ACACCTGCCTTTTCTTTGGTC 58.968 47.619 0.00 0.00 0.00 4.02
285 286 2.159179 ACACCTGCCTTTTCTTTGGT 57.841 45.000 0.00 0.00 0.00 3.67
286 287 2.430332 TGAACACCTGCCTTTTCTTTGG 59.570 45.455 0.00 0.00 0.00 3.28
287 288 3.799281 TGAACACCTGCCTTTTCTTTG 57.201 42.857 0.00 0.00 0.00 2.77
288 289 4.383010 CCTTTGAACACCTGCCTTTTCTTT 60.383 41.667 0.00 0.00 0.00 2.52
289 290 3.132824 CCTTTGAACACCTGCCTTTTCTT 59.867 43.478 0.00 0.00 0.00 2.52
290 291 2.695147 CCTTTGAACACCTGCCTTTTCT 59.305 45.455 0.00 0.00 0.00 2.52
291 292 2.430694 ACCTTTGAACACCTGCCTTTTC 59.569 45.455 0.00 0.00 0.00 2.29
292 293 2.168313 CACCTTTGAACACCTGCCTTTT 59.832 45.455 0.00 0.00 0.00 2.27
293 294 1.756538 CACCTTTGAACACCTGCCTTT 59.243 47.619 0.00 0.00 0.00 3.11
294 295 1.402787 CACCTTTGAACACCTGCCTT 58.597 50.000 0.00 0.00 0.00 4.35
295 296 1.109323 GCACCTTTGAACACCTGCCT 61.109 55.000 0.00 0.00 0.00 4.75
296 297 1.363807 GCACCTTTGAACACCTGCC 59.636 57.895 0.00 0.00 0.00 4.85
297 298 0.249031 GTGCACCTTTGAACACCTGC 60.249 55.000 5.22 0.00 30.37 4.85
298 299 3.944871 GTGCACCTTTGAACACCTG 57.055 52.632 5.22 0.00 30.37 4.00
301 302 1.098712 TCGGGTGCACCTTTGAACAC 61.099 55.000 33.91 14.60 31.86 3.32
302 303 0.817634 CTCGGGTGCACCTTTGAACA 60.818 55.000 33.91 10.21 31.86 3.18
303 304 1.949257 CTCGGGTGCACCTTTGAAC 59.051 57.895 33.91 16.08 36.97 3.18
304 305 1.896660 GCTCGGGTGCACCTTTGAA 60.897 57.895 33.91 14.56 36.97 2.69
305 306 2.281484 GCTCGGGTGCACCTTTGA 60.281 61.111 33.91 25.82 36.97 2.69
306 307 3.365265 GGCTCGGGTGCACCTTTG 61.365 66.667 33.91 23.32 36.97 2.77
307 308 3.884774 TGGCTCGGGTGCACCTTT 61.885 61.111 33.91 0.00 36.97 3.11
308 309 4.643387 GTGGCTCGGGTGCACCTT 62.643 66.667 33.91 0.00 36.97 3.50
311 312 3.665675 CTAGGTGGCTCGGGTGCAC 62.666 68.421 8.80 8.80 34.04 4.57
312 313 3.390521 CTAGGTGGCTCGGGTGCA 61.391 66.667 0.00 0.00 34.04 4.57
313 314 4.840005 GCTAGGTGGCTCGGGTGC 62.840 72.222 0.00 0.00 0.00 5.01
314 315 3.077556 AGCTAGGTGGCTCGGGTG 61.078 66.667 0.00 0.00 38.24 4.61
320 321 0.323542 AGTACGTGAGCTAGGTGGCT 60.324 55.000 0.00 0.00 46.11 4.75
321 322 0.100861 GAGTACGTGAGCTAGGTGGC 59.899 60.000 0.00 0.00 0.00 5.01
322 323 0.739561 GGAGTACGTGAGCTAGGTGG 59.260 60.000 0.00 0.00 0.00 4.61
323 324 1.671845 GAGGAGTACGTGAGCTAGGTG 59.328 57.143 0.00 0.00 0.00 4.00
324 325 1.560611 AGAGGAGTACGTGAGCTAGGT 59.439 52.381 0.00 0.00 0.00 3.08
325 326 2.215196 GAGAGGAGTACGTGAGCTAGG 58.785 57.143 0.00 0.00 0.00 3.02
326 327 2.215196 GGAGAGGAGTACGTGAGCTAG 58.785 57.143 0.00 0.00 0.00 3.42
327 328 1.472904 CGGAGAGGAGTACGTGAGCTA 60.473 57.143 0.00 0.00 0.00 3.32
328 329 0.745128 CGGAGAGGAGTACGTGAGCT 60.745 60.000 0.00 0.00 0.00 4.09
329 330 1.025647 ACGGAGAGGAGTACGTGAGC 61.026 60.000 0.00 0.00 38.24 4.26
330 331 1.451067 AACGGAGAGGAGTACGTGAG 58.549 55.000 0.00 0.00 39.76 3.51
331 332 2.289631 TGTAACGGAGAGGAGTACGTGA 60.290 50.000 0.00 0.00 39.76 4.35
332 333 2.079158 TGTAACGGAGAGGAGTACGTG 58.921 52.381 0.00 0.00 39.76 4.49
333 334 2.289945 ACTGTAACGGAGAGGAGTACGT 60.290 50.000 0.00 0.00 41.88 3.57
334 335 2.354259 ACTGTAACGGAGAGGAGTACG 58.646 52.381 0.00 0.00 0.00 3.67
335 336 4.780275 AAACTGTAACGGAGAGGAGTAC 57.220 45.455 0.00 0.00 0.00 2.73
336 337 5.564550 AGTAAACTGTAACGGAGAGGAGTA 58.435 41.667 0.00 0.00 0.00 2.59
337 338 4.405548 AGTAAACTGTAACGGAGAGGAGT 58.594 43.478 0.00 0.00 0.00 3.85
338 339 4.701171 AGAGTAAACTGTAACGGAGAGGAG 59.299 45.833 0.00 0.00 0.00 3.69
339 340 4.458295 CAGAGTAAACTGTAACGGAGAGGA 59.542 45.833 0.00 0.00 33.73 3.71
340 341 4.734917 CAGAGTAAACTGTAACGGAGAGG 58.265 47.826 0.00 0.00 33.73 3.69
341 342 4.167268 GCAGAGTAAACTGTAACGGAGAG 58.833 47.826 0.00 0.00 39.73 3.20
342 343 3.365666 CGCAGAGTAAACTGTAACGGAGA 60.366 47.826 0.00 0.00 39.73 3.71
343 344 2.915463 CGCAGAGTAAACTGTAACGGAG 59.085 50.000 0.00 0.00 39.73 4.63
344 345 2.294233 ACGCAGAGTAAACTGTAACGGA 59.706 45.455 0.00 0.00 39.73 4.69
345 346 2.660236 GACGCAGAGTAAACTGTAACGG 59.340 50.000 0.00 0.00 39.73 4.44
346 347 3.562505 AGACGCAGAGTAAACTGTAACG 58.437 45.455 0.00 0.00 39.73 3.18
347 348 6.148264 AGTTAGACGCAGAGTAAACTGTAAC 58.852 40.000 4.34 0.00 37.60 2.50
348 349 6.323203 AGTTAGACGCAGAGTAAACTGTAA 57.677 37.500 4.34 0.00 37.60 2.41
349 350 5.954296 AGTTAGACGCAGAGTAAACTGTA 57.046 39.130 4.34 0.00 37.60 2.74
350 351 4.850347 AGTTAGACGCAGAGTAAACTGT 57.150 40.909 4.34 0.00 37.60 3.55
351 352 6.355638 CAAAAGTTAGACGCAGAGTAAACTG 58.644 40.000 5.58 0.00 38.44 3.16
352 353 5.050295 GCAAAAGTTAGACGCAGAGTAAACT 60.050 40.000 0.25 0.25 39.45 2.66
353 354 5.050295 AGCAAAAGTTAGACGCAGAGTAAAC 60.050 40.000 0.00 0.00 32.15 2.01
354 355 5.054477 AGCAAAAGTTAGACGCAGAGTAAA 58.946 37.500 0.00 0.00 0.00 2.01
355 356 4.628074 AGCAAAAGTTAGACGCAGAGTAA 58.372 39.130 0.00 0.00 0.00 2.24
356 357 4.252971 AGCAAAAGTTAGACGCAGAGTA 57.747 40.909 0.00 0.00 0.00 2.59
357 358 3.113260 AGCAAAAGTTAGACGCAGAGT 57.887 42.857 0.00 0.00 0.00 3.24
358 359 4.212214 AGAAAGCAAAAGTTAGACGCAGAG 59.788 41.667 0.00 0.00 0.00 3.35
359 360 4.127171 AGAAAGCAAAAGTTAGACGCAGA 58.873 39.130 0.00 0.00 0.00 4.26
360 361 4.458708 GAGAAAGCAAAAGTTAGACGCAG 58.541 43.478 0.00 0.00 0.00 5.18
361 362 3.250040 GGAGAAAGCAAAAGTTAGACGCA 59.750 43.478 0.00 0.00 0.00 5.24
362 363 3.664537 CGGAGAAAGCAAAAGTTAGACGC 60.665 47.826 0.00 0.00 0.00 5.19
363 364 3.493503 ACGGAGAAAGCAAAAGTTAGACG 59.506 43.478 0.00 0.00 0.00 4.18
364 365 5.419760 AACGGAGAAAGCAAAAGTTAGAC 57.580 39.130 0.00 0.00 0.00 2.59
365 366 5.820947 AGAAACGGAGAAAGCAAAAGTTAGA 59.179 36.000 0.00 0.00 0.00 2.10
366 367 6.061231 AGAAACGGAGAAAGCAAAAGTTAG 57.939 37.500 0.00 0.00 0.00 2.34
367 368 7.556733 TTAGAAACGGAGAAAGCAAAAGTTA 57.443 32.000 0.00 0.00 0.00 2.24
368 369 4.983671 AGAAACGGAGAAAGCAAAAGTT 57.016 36.364 0.00 0.00 0.00 2.66
369 370 6.445357 TTTAGAAACGGAGAAAGCAAAAGT 57.555 33.333 0.00 0.00 0.00 2.66
370 371 9.626045 ATTATTTAGAAACGGAGAAAGCAAAAG 57.374 29.630 0.00 0.00 0.00 2.27
374 375 9.661563 TCTTATTATTTAGAAACGGAGAAAGCA 57.338 29.630 0.00 0.00 0.00 3.91
375 376 9.917872 GTCTTATTATTTAGAAACGGAGAAAGC 57.082 33.333 0.00 0.00 0.00 3.51
377 378 9.643693 ACGTCTTATTATTTAGAAACGGAGAAA 57.356 29.630 0.00 0.00 0.00 2.52
378 379 9.643693 AACGTCTTATTATTTAGAAACGGAGAA 57.356 29.630 0.00 0.00 0.00 2.87
379 380 9.643693 AAACGTCTTATTATTTAGAAACGGAGA 57.356 29.630 0.00 0.00 0.00 3.71
382 383 9.815936 ACAAAACGTCTTATTATTTAGAAACGG 57.184 29.630 0.00 0.00 0.00 4.44
401 402 9.720569 CGGTTCAATTTATAAAATGACAAAACG 57.279 29.630 14.21 11.15 28.21 3.60
404 405 9.967346 TGACGGTTCAATTTATAAAATGACAAA 57.033 25.926 14.21 0.00 28.21 2.83
405 406 9.967346 TTGACGGTTCAATTTATAAAATGACAA 57.033 25.926 14.21 11.86 36.79 3.18
406 407 9.619316 CTTGACGGTTCAATTTATAAAATGACA 57.381 29.630 14.21 7.26 41.05 3.58
407 408 9.834628 TCTTGACGGTTCAATTTATAAAATGAC 57.165 29.630 14.21 10.06 41.05 3.06
408 409 9.834628 GTCTTGACGGTTCAATTTATAAAATGA 57.165 29.630 11.18 11.18 41.05 2.57
409 410 8.785101 CGTCTTGACGGTTCAATTTATAAAATG 58.215 33.333 14.53 6.90 41.05 2.32
410 411 8.508875 ACGTCTTGACGGTTCAATTTATAAAAT 58.491 29.630 23.99 0.00 41.05 1.82
411 412 7.863666 ACGTCTTGACGGTTCAATTTATAAAA 58.136 30.769 23.99 0.00 41.05 1.52
412 413 7.385752 AGACGTCTTGACGGTTCAATTTATAAA 59.614 33.333 23.99 0.00 41.05 1.40
413 414 6.869913 AGACGTCTTGACGGTTCAATTTATAA 59.130 34.615 23.99 0.00 41.05 0.98
414 415 6.392354 AGACGTCTTGACGGTTCAATTTATA 58.608 36.000 23.99 0.00 41.05 0.98
415 416 5.235516 AGACGTCTTGACGGTTCAATTTAT 58.764 37.500 23.99 2.26 41.05 1.40
416 417 4.624015 AGACGTCTTGACGGTTCAATTTA 58.376 39.130 23.99 0.00 41.05 1.40
417 418 3.463944 AGACGTCTTGACGGTTCAATTT 58.536 40.909 23.99 3.60 41.05 1.82
418 419 3.107642 AGACGTCTTGACGGTTCAATT 57.892 42.857 23.99 4.28 41.05 2.32
419 420 2.814280 AGACGTCTTGACGGTTCAAT 57.186 45.000 23.99 4.96 41.05 2.57
420 421 2.589798 AAGACGTCTTGACGGTTCAA 57.410 45.000 29.24 0.00 39.55 2.69
421 422 3.928727 ATAAGACGTCTTGACGGTTCA 57.071 42.857 35.24 16.96 37.40 3.18
422 423 6.882458 AAATATAAGACGTCTTGACGGTTC 57.118 37.500 35.24 14.71 37.40 3.62
423 424 8.761575 TTTAAATATAAGACGTCTTGACGGTT 57.238 30.769 35.24 23.89 37.40 4.44
424 425 8.761575 TTTTAAATATAAGACGTCTTGACGGT 57.238 30.769 35.24 21.26 37.40 4.83
425 426 9.469239 GTTTTTAAATATAAGACGTCTTGACGG 57.531 33.333 35.24 9.00 37.40 4.79
528 529 9.750783 GGGTATAACTATTGTCCAGAGAGTATA 57.249 37.037 0.00 0.00 0.00 1.47
529 530 8.457757 AGGGTATAACTATTGTCCAGAGAGTAT 58.542 37.037 0.00 0.00 0.00 2.12
530 531 7.823635 AGGGTATAACTATTGTCCAGAGAGTA 58.176 38.462 0.00 0.00 0.00 2.59
531 532 6.684538 AGGGTATAACTATTGTCCAGAGAGT 58.315 40.000 0.00 0.00 0.00 3.24
532 533 7.007723 AGAGGGTATAACTATTGTCCAGAGAG 58.992 42.308 0.00 0.00 0.00 3.20
533 534 6.778069 CAGAGGGTATAACTATTGTCCAGAGA 59.222 42.308 0.00 0.00 0.00 3.10
534 535 6.551601 ACAGAGGGTATAACTATTGTCCAGAG 59.448 42.308 0.00 0.00 0.00 3.35
535 536 6.441222 ACAGAGGGTATAACTATTGTCCAGA 58.559 40.000 0.00 0.00 0.00 3.86
536 537 6.323996 TGACAGAGGGTATAACTATTGTCCAG 59.676 42.308 12.97 0.00 34.40 3.86
537 538 6.199376 TGACAGAGGGTATAACTATTGTCCA 58.801 40.000 12.97 3.67 34.40 4.02
538 539 6.726490 TGACAGAGGGTATAACTATTGTCC 57.274 41.667 12.97 0.00 34.40 4.02
541 542 9.574458 CGATTATGACAGAGGGTATAACTATTG 57.426 37.037 0.00 0.00 0.00 1.90
542 543 9.529823 TCGATTATGACAGAGGGTATAACTATT 57.470 33.333 0.00 0.00 0.00 1.73
543 544 8.958506 GTCGATTATGACAGAGGGTATAACTAT 58.041 37.037 0.00 0.00 38.75 2.12
544 545 8.162085 AGTCGATTATGACAGAGGGTATAACTA 58.838 37.037 0.00 0.00 41.41 2.24
545 546 7.005296 AGTCGATTATGACAGAGGGTATAACT 58.995 38.462 0.00 0.00 41.41 2.24
546 547 7.216973 AGTCGATTATGACAGAGGGTATAAC 57.783 40.000 0.00 0.00 41.41 1.89
547 548 7.834881 AAGTCGATTATGACAGAGGGTATAA 57.165 36.000 0.00 0.00 41.41 0.98
548 549 7.834881 AAAGTCGATTATGACAGAGGGTATA 57.165 36.000 0.00 0.00 41.41 1.47
549 550 6.732896 AAAGTCGATTATGACAGAGGGTAT 57.267 37.500 0.00 0.00 41.41 2.73
550 551 6.070995 ACAAAAGTCGATTATGACAGAGGGTA 60.071 38.462 0.00 0.00 41.41 3.69
551 552 5.178797 CAAAAGTCGATTATGACAGAGGGT 58.821 41.667 0.00 0.00 41.41 4.34
552 553 5.178797 ACAAAAGTCGATTATGACAGAGGG 58.821 41.667 0.00 0.00 41.41 4.30
553 554 6.591834 AGAACAAAAGTCGATTATGACAGAGG 59.408 38.462 0.00 0.00 41.41 3.69
554 555 7.588143 AGAACAAAAGTCGATTATGACAGAG 57.412 36.000 0.00 0.00 41.41 3.35
555 556 9.653287 AATAGAACAAAAGTCGATTATGACAGA 57.347 29.630 0.00 0.00 41.41 3.41
556 557 9.907576 GAATAGAACAAAAGTCGATTATGACAG 57.092 33.333 0.00 0.00 41.41 3.51
557 558 9.653287 AGAATAGAACAAAAGTCGATTATGACA 57.347 29.630 0.00 0.00 41.41 3.58
559 560 9.869757 TGAGAATAGAACAAAAGTCGATTATGA 57.130 29.630 0.00 0.00 0.00 2.15
560 561 9.907576 GTGAGAATAGAACAAAAGTCGATTATG 57.092 33.333 0.00 0.00 0.00 1.90
561 562 8.808529 CGTGAGAATAGAACAAAAGTCGATTAT 58.191 33.333 0.00 0.00 0.00 1.28
562 563 8.024865 TCGTGAGAATAGAACAAAAGTCGATTA 58.975 33.333 0.00 0.00 37.03 1.75
563 564 6.866770 TCGTGAGAATAGAACAAAAGTCGATT 59.133 34.615 0.00 0.00 37.03 3.34
564 565 6.387465 TCGTGAGAATAGAACAAAAGTCGAT 58.613 36.000 0.00 0.00 37.03 3.59
565 566 5.765176 TCGTGAGAATAGAACAAAAGTCGA 58.235 37.500 0.00 0.00 37.03 4.20
566 567 6.448053 TTCGTGAGAATAGAACAAAAGTCG 57.552 37.500 0.00 0.00 46.92 4.18
581 582 6.884832 ACCCTGTAAAATATGATTCGTGAGA 58.115 36.000 0.00 0.00 39.20 3.27
582 583 7.553881 AACCCTGTAAAATATGATTCGTGAG 57.446 36.000 0.00 0.00 0.00 3.51
583 584 9.621629 ATTAACCCTGTAAAATATGATTCGTGA 57.378 29.630 0.00 0.00 0.00 4.35
595 596 9.660180 GGCAAAATGATAATTAACCCTGTAAAA 57.340 29.630 0.00 0.00 0.00 1.52
596 597 8.261522 GGGCAAAATGATAATTAACCCTGTAAA 58.738 33.333 0.00 0.00 31.84 2.01
597 598 7.621683 AGGGCAAAATGATAATTAACCCTGTAA 59.378 33.333 8.74 0.00 43.52 2.41
598 599 7.129425 AGGGCAAAATGATAATTAACCCTGTA 58.871 34.615 8.74 0.00 43.52 2.74
599 600 5.963865 AGGGCAAAATGATAATTAACCCTGT 59.036 36.000 8.74 0.00 43.52 4.00
600 601 6.484364 AGGGCAAAATGATAATTAACCCTG 57.516 37.500 8.74 0.00 43.52 4.45
614 615 3.571590 TGAACACCACTAAGGGCAAAAT 58.428 40.909 0.00 0.00 43.89 1.82
633 634 2.810274 GAGAGCAAAACTGAGCACATGA 59.190 45.455 0.00 0.00 0.00 3.07
666 667 1.355720 ACTAGGGGCAAAACTGAGCAT 59.644 47.619 0.00 0.00 0.00 3.79
702 703 1.001268 GACGACAGAGCTCACAGAACA 60.001 52.381 17.77 0.00 0.00 3.18
771 772 1.341089 TGATCGTCTAGGGTGCTCTGT 60.341 52.381 0.00 0.00 0.00 3.41
777 778 0.663688 CGGTCTGATCGTCTAGGGTG 59.336 60.000 1.33 0.00 0.00 4.61
869 887 4.363990 CGCCGCTGTCTGTCACCT 62.364 66.667 0.00 0.00 0.00 4.00
872 890 4.662961 CACCGCCGCTGTCTGTCA 62.663 66.667 0.00 0.00 0.00 3.58
911 961 2.592574 TCTCGTCGTGGTCACCGT 60.593 61.111 0.00 0.00 0.00 4.83
1025 1122 4.212913 GGCTCTGCATCCGCGAGA 62.213 66.667 8.23 3.13 42.97 4.04
1047 1144 4.314440 ACAGGCATGTCCGCACGT 62.314 61.111 0.00 0.00 40.77 4.49
1173 1271 2.406130 CACGAAAATGGTGCAATTGCT 58.594 42.857 29.37 8.90 42.66 3.91
1257 1356 1.070445 GGCCAGATCATCGACCCAG 59.930 63.158 0.00 0.00 0.00 4.45
1268 1367 2.475155 TCATGAGAGTCTTGGCCAGAT 58.525 47.619 5.11 0.00 32.60 2.90
1351 1452 0.608308 TCTTCTTCCGGAGCTCGTGA 60.608 55.000 3.34 3.50 37.11 4.35
1406 1507 8.321353 TCTTCTTCAACATCCTAAGCTCAATAA 58.679 33.333 0.00 0.00 0.00 1.40
1471 1572 4.202398 TGCCCAAAAGTAATTGCAAATGGA 60.202 37.500 1.71 0.00 0.00 3.41
1536 1637 6.207417 CCTTCGTAATTCATGCCTTTCCATAT 59.793 38.462 0.00 0.00 0.00 1.78
1699 1815 4.744570 CAGAGTGCTGCATTTCATTGATT 58.255 39.130 5.27 0.00 34.95 2.57
1716 1832 1.001860 GACAGAAAGGCAGAGCAGAGT 59.998 52.381 0.00 0.00 0.00 3.24
1768 1888 2.103042 GGCACTTGGCTCTACGCTG 61.103 63.158 0.00 0.00 44.01 5.18
1836 1970 7.920682 AGAATAGAAAACTGAAAAACACGCAAT 59.079 29.630 0.00 0.00 0.00 3.56
2164 2312 0.257039 GAGTCCCCAGATGCACCAAT 59.743 55.000 0.00 0.00 0.00 3.16
2173 2321 4.761163 TGGGTTTGAGTCCCCAGA 57.239 55.556 1.71 0.00 46.06 3.86
2223 2371 1.611261 TGCCCTAGCGGTTACCAGT 60.611 57.895 1.13 0.00 44.31 4.00
2267 2415 7.285629 CAGTCTCACTATGTATACCTTCCTTCA 59.714 40.741 0.00 0.00 0.00 3.02
2320 2564 3.202906 CAAAGGAAAACCACTCTCACGA 58.797 45.455 0.00 0.00 0.00 4.35
2438 2713 5.860182 CCAAGTCATGAACTAACATGCAAAG 59.140 40.000 0.00 0.00 44.79 2.77
2502 2863 5.867716 GTCCGTGAACTTATCTATGTGTGTT 59.132 40.000 0.00 0.00 0.00 3.32
2504 2865 5.288712 GTGTCCGTGAACTTATCTATGTGTG 59.711 44.000 0.00 0.00 0.00 3.82
2505 2866 5.408356 GTGTCCGTGAACTTATCTATGTGT 58.592 41.667 0.00 0.00 0.00 3.72
2506 2867 4.499399 CGTGTCCGTGAACTTATCTATGTG 59.501 45.833 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.