Multiple sequence alignment - TraesCS6B01G253800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G253800 chr6B 100.000 3762 0 0 1 3762 456301206 456297445 0.000000e+00 6948.0
1 TraesCS6B01G253800 chr6B 94.227 2754 109 22 617 3355 456211085 456208367 0.000000e+00 4159.0
2 TraesCS6B01G253800 chr6B 90.419 501 39 6 1 500 456251956 456251464 0.000000e+00 651.0
3 TraesCS6B01G253800 chr6B 95.635 252 7 4 1 251 456245776 456245528 5.850000e-108 401.0
4 TraesCS6B01G253800 chr6B 97.549 204 5 0 518 721 456248656 456248453 2.150000e-92 350.0
5 TraesCS6B01G253800 chr6B 98.551 69 1 0 653 721 456248398 456248330 5.100000e-24 122.0
6 TraesCS6B01G253800 chr7B 82.684 231 27 6 280 497 199093306 199093536 3.830000e-45 193.0
7 TraesCS6B01G253800 chr6D 76.555 209 33 10 283 485 372867384 372867186 2.390000e-17 100.0
8 TraesCS6B01G253800 chr2B 88.158 76 9 0 3597 3672 11338991 11338916 1.440000e-14 91.6
9 TraesCS6B01G253800 chr2B 97.368 38 0 1 3357 3394 540431314 540431278 3.140000e-06 63.9
10 TraesCS6B01G253800 chr5B 100.000 38 0 0 3357 3394 369616650 369616687 1.870000e-08 71.3
11 TraesCS6B01G253800 chr1A 100.000 38 0 0 3357 3394 106220619 106220582 1.870000e-08 71.3
12 TraesCS6B01G253800 chr3A 83.562 73 11 1 428 500 689388057 689387986 2.430000e-07 67.6
13 TraesCS6B01G253800 chr1B 97.368 38 1 0 3357 3394 160321083 160321046 8.720000e-07 65.8
14 TraesCS6B01G253800 chr4A 94.872 39 2 0 3357 3395 679151766 679151728 1.130000e-05 62.1
15 TraesCS6B01G253800 chr1D 94.737 38 2 0 3357 3394 481386553 481386590 4.060000e-05 60.2
16 TraesCS6B01G253800 chr1D 81.944 72 10 3 427 497 143249975 143250044 1.460000e-04 58.4
17 TraesCS6B01G253800 chr5A 100.000 31 0 0 3365 3395 361907238 361907268 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G253800 chr6B 456297445 456301206 3761 True 6948 6948 100.0000 1 3762 1 chr6B.!!$R2 3761
1 TraesCS6B01G253800 chr6B 456208367 456211085 2718 True 4159 4159 94.2270 617 3355 1 chr6B.!!$R1 2738
2 TraesCS6B01G253800 chr6B 456245528 456251956 6428 True 381 651 95.5385 1 721 4 chr6B.!!$R3 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 3647 0.039618 CTCCAGCTTGGCCCCTAAAA 59.960 55.0 0.0 0.0 37.47 1.52 F
1839 4763 0.178990 GAACAGAACCCTTGCCACCT 60.179 55.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 6096 0.035458 CCTCTTCGGCTGGAAACTGT 59.965 55.0 0.0 0.0 33.34 3.55 R
3734 8186 0.032615 TTGTGTTGTTGAGGGGGCTT 60.033 50.0 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.606687 ACCAGGGTTTATAGAAGCAACG 58.393 45.455 0.00 0.00 0.00 4.10
31 32 4.094442 CCAGGGTTTATAGAAGCAACGAAC 59.906 45.833 0.00 0.00 0.00 3.95
40 41 8.997621 TTATAGAAGCAACGAACAGAGTAAAT 57.002 30.769 0.00 0.00 0.00 1.40
42 43 5.990408 AGAAGCAACGAACAGAGTAAATTG 58.010 37.500 0.00 0.00 0.00 2.32
44 45 3.502211 AGCAACGAACAGAGTAAATTGGG 59.498 43.478 0.00 0.00 0.00 4.12
47 48 1.396996 CGAACAGAGTAAATTGGGCCG 59.603 52.381 0.00 0.00 0.00 6.13
70 71 0.524392 CATGGTCAGTCGTCTCGCTC 60.524 60.000 0.00 0.00 0.00 5.03
84 85 4.327885 GCTCGGGTCTATGCGAAG 57.672 61.111 0.00 0.00 0.00 3.79
125 126 6.801862 GCAATAAGCGTCAAATAGTGTCTTTT 59.198 34.615 0.00 0.00 0.00 2.27
134 135 6.573725 GTCAAATAGTGTCTTTTTGCAGTACG 59.426 38.462 7.46 0.00 34.22 3.67
161 162 2.074547 TAGAGGCGTTTCTGTTTCCG 57.925 50.000 1.71 0.00 0.00 4.30
162 163 1.206831 GAGGCGTTTCTGTTTCCGC 59.793 57.895 0.00 0.00 45.05 5.54
165 166 3.243855 GCGTTTCTGTTTCCGCAAA 57.756 47.368 0.00 0.00 45.12 3.68
168 169 1.064952 CGTTTCTGTTTCCGCAAAGGT 59.935 47.619 0.00 0.00 41.99 3.50
182 183 0.251033 AAAGGTCGTTACTTGGGCCC 60.251 55.000 17.59 17.59 0.00 5.80
195 196 2.995547 GGCCCGACCCATTACTGT 59.004 61.111 0.00 0.00 0.00 3.55
203 204 3.306780 CCGACCCATTACTGTTTCTCTGT 60.307 47.826 0.00 0.00 0.00 3.41
344 345 4.740205 CGCAACTCTTTTCCCTTTTTCTTC 59.260 41.667 0.00 0.00 0.00 2.87
351 352 8.041323 ACTCTTTTCCCTTTTTCTTCTTTTTCC 58.959 33.333 0.00 0.00 0.00 3.13
356 357 9.581289 TTTCCCTTTTTCTTCTTTTTCCTTTTT 57.419 25.926 0.00 0.00 0.00 1.94
416 417 3.182967 GTTTTGTGGAAATGCACGAACA 58.817 40.909 7.18 0.00 0.00 3.18
433 434 6.304445 GCACGAACATTTTACATCAAATTCGA 59.696 34.615 9.73 0.00 37.92 3.71
451 452 4.685169 TCGATGAGCTGGTTTCAAATTC 57.315 40.909 0.00 0.00 0.00 2.17
507 3265 4.518590 TGAAATTCGATGAGCTGGTTTCAA 59.481 37.500 0.00 0.00 32.93 2.69
519 3277 6.545666 TGAGCTGGTTTCAAATTACTTCAAGA 59.454 34.615 0.00 0.00 0.00 3.02
522 3280 7.068716 AGCTGGTTTCAAATTACTTCAAGAGTT 59.931 33.333 0.00 0.00 39.86 3.01
580 3372 3.522553 GACGGTTCGAATCCATCTTTCT 58.477 45.455 0.00 0.00 0.00 2.52
634 3426 3.891817 GGCTAGCCAGATGCCCTA 58.108 61.111 29.33 0.00 42.71 3.53
721 3636 1.545706 GGAGTCGGTTCCTCCAGCTT 61.546 60.000 1.64 0.00 46.46 3.74
722 3637 0.390472 GAGTCGGTTCCTCCAGCTTG 60.390 60.000 0.00 0.00 35.57 4.01
723 3638 1.376037 GTCGGTTCCTCCAGCTTGG 60.376 63.158 0.00 0.00 39.43 3.61
724 3639 2.747855 CGGTTCCTCCAGCTTGGC 60.748 66.667 0.00 0.00 37.47 4.52
726 3641 2.361737 GTTCCTCCAGCTTGGCCC 60.362 66.667 0.00 0.00 37.47 5.80
727 3642 3.661648 TTCCTCCAGCTTGGCCCC 61.662 66.667 0.00 0.00 37.47 5.80
728 3643 4.682714 TCCTCCAGCTTGGCCCCT 62.683 66.667 0.00 0.00 37.47 4.79
729 3644 2.692368 CCTCCAGCTTGGCCCCTA 60.692 66.667 0.00 0.00 37.47 3.53
730 3645 2.308722 CCTCCAGCTTGGCCCCTAA 61.309 63.158 0.00 0.00 37.47 2.69
731 3646 1.691219 CTCCAGCTTGGCCCCTAAA 59.309 57.895 0.00 0.00 37.47 1.85
732 3647 0.039618 CTCCAGCTTGGCCCCTAAAA 59.960 55.000 0.00 0.00 37.47 1.52
733 3648 0.485099 TCCAGCTTGGCCCCTAAAAA 59.515 50.000 0.00 0.00 37.47 1.94
1038 3962 0.764890 CACAGAGAACCCCTTCACCA 59.235 55.000 0.00 0.00 0.00 4.17
1083 4007 3.445805 GTCGGAGAACTTCATCCTCTTCT 59.554 47.826 0.00 0.00 39.69 2.85
1097 4021 2.159310 CCTCTTCTGTGTCCATCTCGTC 60.159 54.545 0.00 0.00 0.00 4.20
1098 4022 1.819288 TCTTCTGTGTCCATCTCGTCC 59.181 52.381 0.00 0.00 0.00 4.79
1099 4023 1.821753 CTTCTGTGTCCATCTCGTCCT 59.178 52.381 0.00 0.00 0.00 3.85
1129 4053 4.342665 CCCACCAGAGTTCTTCCTCTATAC 59.657 50.000 0.00 0.00 39.81 1.47
1149 4073 3.387947 TCGAAGGCCCGGAGTTCC 61.388 66.667 0.73 0.00 0.00 3.62
1150 4074 4.468689 CGAAGGCCCGGAGTTCCC 62.469 72.222 0.73 0.00 0.00 3.97
1154 4078 4.097361 GGCCCGGAGTTCCCAGAC 62.097 72.222 0.73 0.00 34.14 3.51
1178 4102 2.559440 GATGCTTAGTCTGCTTCCTGG 58.441 52.381 0.00 0.00 0.00 4.45
1179 4103 1.352083 TGCTTAGTCTGCTTCCTGGT 58.648 50.000 0.00 0.00 0.00 4.00
1196 4120 2.811431 CTGGTTTTGGCTCGTATTGTGA 59.189 45.455 0.00 0.00 0.00 3.58
1222 4146 4.399618 GCGAGATGCTAGATCCATACCTTA 59.600 45.833 0.00 0.00 41.73 2.69
1236 4160 0.383231 ACCTTATAGGCGTCGTTCCG 59.617 55.000 0.00 0.00 39.63 4.30
1317 4241 2.622436 GAACACCACATCTACAGGCTC 58.378 52.381 0.00 0.00 0.00 4.70
1414 4338 4.523083 TCCAGATAAGGTGGTTGCATTAC 58.477 43.478 0.00 0.00 36.37 1.89
1415 4339 4.018870 TCCAGATAAGGTGGTTGCATTACA 60.019 41.667 0.00 0.00 36.37 2.41
1434 4358 4.307032 ACATCAAGAAGTGGGCTATGTT 57.693 40.909 0.00 0.00 0.00 2.71
1490 4414 0.596082 AAAAATCCGGTGAAGGCACG 59.404 50.000 0.00 0.00 46.09 5.34
1566 4490 3.813596 CCAGGACAGGCAATACGC 58.186 61.111 0.00 0.00 41.28 4.42
1585 4509 1.004595 CGATGTCACCTGCACTGATG 58.995 55.000 0.00 0.00 0.00 3.07
1597 4521 5.296780 ACCTGCACTGATGGTTATAAAATCG 59.703 40.000 0.00 0.00 0.00 3.34
1599 4523 6.481976 CCTGCACTGATGGTTATAAAATCGTA 59.518 38.462 0.00 0.00 0.00 3.43
1660 4584 1.499438 TCCCCGATCCTGATGTACTCT 59.501 52.381 0.00 0.00 0.00 3.24
1684 4608 9.117183 TCTATGATTTTGAAGTTGATCCATCTG 57.883 33.333 0.00 0.00 0.00 2.90
1685 4609 7.949690 ATGATTTTGAAGTTGATCCATCTGA 57.050 32.000 0.00 0.00 0.00 3.27
1700 4624 2.743636 TCTGAGAAGGTGGTAAAGCG 57.256 50.000 0.00 0.00 0.00 4.68
1705 4629 1.165270 GAAGGTGGTAAAGCGCATGT 58.835 50.000 11.47 0.00 0.00 3.21
1735 4659 1.961394 GGAGGCTCGTGACATGGTATA 59.039 52.381 8.69 0.00 0.00 1.47
1743 4667 4.079970 TCGTGACATGGTATAGGGAGATC 58.920 47.826 0.00 0.00 0.00 2.75
1839 4763 0.178990 GAACAGAACCCTTGCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
2015 4939 1.294780 CAGTGAGAGGACTGGTGCC 59.705 63.158 0.00 0.00 39.85 5.01
2056 4980 0.872021 GCGTCTCAATCCAGCCTACG 60.872 60.000 0.00 0.00 0.00 3.51
2063 4987 2.628178 TCAATCCAGCCTACGTATCCTG 59.372 50.000 13.01 13.01 0.00 3.86
2129 5053 5.178252 GCGCTATCTGTTTATCATGTGACAT 59.822 40.000 0.00 0.00 0.00 3.06
2175 5574 5.648960 TCGTCCTTTTTGGGGATATGTTTAC 59.351 40.000 0.00 0.00 35.15 2.01
2222 5621 8.250538 AGCAAATTTAATTTTGGTATTCACGG 57.749 30.769 20.21 0.00 43.41 4.94
2295 5694 5.310451 AGTTAAGCCTTAAAACGATGGTGA 58.690 37.500 0.00 0.00 0.00 4.02
2314 5713 4.508124 GGTGATTCTTATTCAGGCTGTACG 59.492 45.833 15.27 0.00 0.00 3.67
2409 5808 8.745590 GGCTAAAGTATTTTAAATTGTCAGGGA 58.254 33.333 0.00 0.00 40.09 4.20
2465 5864 5.381757 TGTTACTATTTGGCCTGTTCAGTT 58.618 37.500 3.32 0.00 0.00 3.16
2471 5870 4.599047 TTTGGCCTGTTCAGTTTTATGG 57.401 40.909 3.32 0.00 0.00 2.74
2477 5876 4.202212 GCCTGTTCAGTTTTATGGTTGGTT 60.202 41.667 0.00 0.00 0.00 3.67
2526 5925 4.509230 TGAATCTGATGTTTATCTGCTCGC 59.491 41.667 0.00 0.00 34.31 5.03
2597 5996 2.289547 GCAAACGTTGTCTGGTATGTGT 59.710 45.455 0.00 0.00 0.00 3.72
2608 6007 5.937540 TGTCTGGTATGTGTTGTTATCCTTG 59.062 40.000 0.00 0.00 0.00 3.61
2697 6096 3.575256 TCGCTCCTGGAAAACACTAGTAA 59.425 43.478 0.00 0.00 0.00 2.24
2718 6117 0.321996 AGTTTCCAGCCGAAGAGGAC 59.678 55.000 0.00 0.00 45.00 3.85
2795 6194 1.334869 GGATTGCCACCAATAAGCTCG 59.665 52.381 0.00 0.00 41.60 5.03
2815 6214 2.609459 CGTGCAATCCTTATCAGGTCAC 59.391 50.000 0.00 0.00 41.69 3.67
2841 6240 8.514594 CAGTAACATTTGTGAATCTTGGTATGT 58.485 33.333 0.00 0.00 0.00 2.29
2846 6245 9.162764 ACATTTGTGAATCTTGGTATGTAGTAC 57.837 33.333 0.00 0.00 0.00 2.73
2849 6248 6.327154 TGTGAATCTTGGTATGTAGTACGTG 58.673 40.000 5.21 0.00 33.94 4.49
2968 6367 6.623486 CATTATTGCTCATCAAGGTTGTCAA 58.377 36.000 0.00 0.00 38.22 3.18
2975 6374 0.874390 TCAAGGTTGTCAAGCATCGC 59.126 50.000 16.66 0.00 0.00 4.58
2991 6390 3.374058 GCATCGCACCTACTAATGTTTGT 59.626 43.478 0.00 0.00 0.00 2.83
2992 6391 4.569162 GCATCGCACCTACTAATGTTTGTA 59.431 41.667 0.00 0.00 0.00 2.41
2993 6392 5.501897 GCATCGCACCTACTAATGTTTGTAC 60.502 44.000 0.00 0.00 0.00 2.90
3159 6561 8.293867 GTGTGTCAGTTATGCTTTAAAACCATA 58.706 33.333 4.82 4.82 0.00 2.74
3177 6579 8.718102 AAACCATATACTGTTAGATGTGTGTC 57.282 34.615 0.00 0.00 0.00 3.67
3179 6581 7.492524 ACCATATACTGTTAGATGTGTGTCAG 58.507 38.462 0.00 0.00 0.00 3.51
3180 6582 7.124298 ACCATATACTGTTAGATGTGTGTCAGT 59.876 37.037 0.00 0.00 39.11 3.41
3181 6583 7.981789 CCATATACTGTTAGATGTGTGTCAGTT 59.018 37.037 0.00 0.00 37.35 3.16
3182 6584 9.025020 CATATACTGTTAGATGTGTGTCAGTTC 57.975 37.037 0.00 0.00 37.35 3.01
3184 6586 5.292765 ACTGTTAGATGTGTGTCAGTTCTG 58.707 41.667 0.00 0.00 33.26 3.02
3185 6587 4.058124 TGTTAGATGTGTGTCAGTTCTGC 58.942 43.478 0.00 0.00 0.00 4.26
3186 6588 1.788258 AGATGTGTGTCAGTTCTGCG 58.212 50.000 0.00 0.00 0.00 5.18
3187 6589 0.164647 GATGTGTGTCAGTTCTGCGC 59.835 55.000 0.00 0.00 0.00 6.09
3195 6597 2.866156 TGTCAGTTCTGCGCTATAATGC 59.134 45.455 9.73 0.87 0.00 3.56
3204 6606 6.618287 TCTGCGCTATAATGCTGTTTAATT 57.382 33.333 9.73 0.00 0.00 1.40
3248 6650 8.189119 TGTGTATCTATACCATGTTAGCATCA 57.811 34.615 0.00 0.00 31.99 3.07
3256 6658 9.310716 CTATACCATGTTAGCATCAGATATGTG 57.689 37.037 0.00 0.00 31.99 3.21
3257 6659 5.933617 ACCATGTTAGCATCAGATATGTGT 58.066 37.500 0.00 0.00 31.99 3.72
3320 6868 5.822519 TGCATATTGATCCTTCAGTTGTACC 59.177 40.000 0.00 0.00 32.27 3.34
3326 6874 0.974383 CCTTCAGTTGTACCCCGTCT 59.026 55.000 0.00 0.00 0.00 4.18
3338 6886 4.964262 TGTACCCCGTCTGTTCCTAAATAT 59.036 41.667 0.00 0.00 0.00 1.28
3345 6896 7.012044 CCCCGTCTGTTCCTAAATATAAGTTTG 59.988 40.741 0.00 0.00 0.00 2.93
3355 6906 9.982651 TCCTAAATATAAGTTTGAGAGATTCCG 57.017 33.333 0.00 0.00 0.00 4.30
3356 6907 9.765795 CCTAAATATAAGTTTGAGAGATTCCGT 57.234 33.333 0.00 0.00 0.00 4.69
3363 6914 9.915629 ATAAGTTTGAGAGATTCCGTATACATC 57.084 33.333 3.32 0.00 0.00 3.06
3364 6915 6.750148 AGTTTGAGAGATTCCGTATACATCC 58.250 40.000 3.32 0.00 0.00 3.51
3366 6917 4.395625 TGAGAGATTCCGTATACATCCGT 58.604 43.478 3.32 0.00 0.00 4.69
3368 6919 6.178324 TGAGAGATTCCGTATACATCCGTAT 58.822 40.000 3.32 0.00 41.34 3.06
3369 6920 6.093633 TGAGAGATTCCGTATACATCCGTATG 59.906 42.308 3.32 0.00 38.79 2.39
3380 7195 2.756760 ACATCCGTATGTAGTCCGTGTT 59.243 45.455 0.00 0.00 44.66 3.32
3383 7198 2.819019 TCCGTATGTAGTCCGTGTTGAA 59.181 45.455 0.00 0.00 0.00 2.69
3388 7203 5.229469 CGTATGTAGTCCGTGTTGAAATCTC 59.771 44.000 0.00 0.00 0.00 2.75
3389 7204 4.866508 TGTAGTCCGTGTTGAAATCTCT 57.133 40.909 0.00 0.00 0.00 3.10
3394 7209 7.711772 TGTAGTCCGTGTTGAAATCTCTAAAAA 59.288 33.333 0.00 0.00 0.00 1.94
3396 7211 8.166422 AGTCCGTGTTGAAATCTCTAAAAATT 57.834 30.769 0.00 0.00 0.00 1.82
3397 7212 9.280174 AGTCCGTGTTGAAATCTCTAAAAATTA 57.720 29.630 0.00 0.00 0.00 1.40
3413 7228 9.866655 TCTAAAAATTATATCTCACCCAATGCT 57.133 29.630 0.00 0.00 0.00 3.79
3414 7229 9.903682 CTAAAAATTATATCTCACCCAATGCTG 57.096 33.333 0.00 0.00 0.00 4.41
3415 7230 7.902920 AAAATTATATCTCACCCAATGCTGT 57.097 32.000 0.00 0.00 0.00 4.40
3416 7231 8.995027 AAAATTATATCTCACCCAATGCTGTA 57.005 30.769 0.00 0.00 0.00 2.74
3417 7232 8.627208 AAATTATATCTCACCCAATGCTGTAG 57.373 34.615 0.00 0.00 0.00 2.74
3418 7233 6.747414 TTATATCTCACCCAATGCTGTAGT 57.253 37.500 0.00 0.00 0.00 2.73
3419 7234 7.849322 TTATATCTCACCCAATGCTGTAGTA 57.151 36.000 0.00 0.00 0.00 1.82
3420 7235 3.887621 TCTCACCCAATGCTGTAGTAC 57.112 47.619 0.00 0.00 0.00 2.73
3421 7236 2.500098 TCTCACCCAATGCTGTAGTACC 59.500 50.000 0.00 0.00 0.00 3.34
3422 7237 2.236146 CTCACCCAATGCTGTAGTACCA 59.764 50.000 0.00 0.00 0.00 3.25
3423 7238 2.843730 TCACCCAATGCTGTAGTACCAT 59.156 45.455 0.00 0.00 0.00 3.55
3424 7239 3.265737 TCACCCAATGCTGTAGTACCATT 59.734 43.478 0.00 0.00 0.00 3.16
3425 7240 4.016444 CACCCAATGCTGTAGTACCATTT 58.984 43.478 0.00 0.00 0.00 2.32
3426 7241 4.096382 CACCCAATGCTGTAGTACCATTTC 59.904 45.833 0.00 0.00 0.00 2.17
3427 7242 3.312421 CCCAATGCTGTAGTACCATTTCG 59.688 47.826 0.00 0.00 0.00 3.46
3428 7243 3.938963 CCAATGCTGTAGTACCATTTCGT 59.061 43.478 0.00 0.00 0.00 3.85
3429 7244 4.201812 CCAATGCTGTAGTACCATTTCGTG 60.202 45.833 0.00 0.00 0.00 4.35
3442 7257 3.508012 CCATTTCGTGGGTTGGTTGATAA 59.492 43.478 0.00 0.00 44.79 1.75
3447 7262 4.970711 TCGTGGGTTGGTTGATAAGTTTA 58.029 39.130 0.00 0.00 0.00 2.01
3448 7263 5.374921 TCGTGGGTTGGTTGATAAGTTTAA 58.625 37.500 0.00 0.00 0.00 1.52
3449 7264 5.239087 TCGTGGGTTGGTTGATAAGTTTAAC 59.761 40.000 0.00 0.00 0.00 2.01
3450 7265 5.454520 GTGGGTTGGTTGATAAGTTTAACG 58.545 41.667 0.00 0.00 0.00 3.18
3451 7266 5.008911 GTGGGTTGGTTGATAAGTTTAACGT 59.991 40.000 0.00 0.00 0.00 3.99
3452 7267 5.593502 TGGGTTGGTTGATAAGTTTAACGTT 59.406 36.000 5.88 5.88 0.00 3.99
3453 7268 6.096564 TGGGTTGGTTGATAAGTTTAACGTTT 59.903 34.615 5.91 0.00 0.00 3.60
3457 7272 8.739461 GTTGGTTGATAAGTTTAACGTTTCTTG 58.261 33.333 5.91 0.00 0.00 3.02
3459 7274 7.911205 TGGTTGATAAGTTTAACGTTTCTTGTG 59.089 33.333 5.91 0.00 0.00 3.33
3460 7275 8.124199 GGTTGATAAGTTTAACGTTTCTTGTGA 58.876 33.333 5.91 0.00 0.00 3.58
3466 7281 6.665465 AGTTTAACGTTTCTTGTGATTAGGC 58.335 36.000 5.91 0.00 0.00 3.93
3467 7282 5.616488 TTAACGTTTCTTGTGATTAGGCC 57.384 39.130 5.91 0.00 0.00 5.19
3469 7284 2.812011 ACGTTTCTTGTGATTAGGCCAC 59.188 45.455 5.01 0.00 35.23 5.01
3470 7285 3.074412 CGTTTCTTGTGATTAGGCCACT 58.926 45.455 5.01 0.00 35.66 4.00
3471 7286 3.502211 CGTTTCTTGTGATTAGGCCACTT 59.498 43.478 5.01 0.00 35.66 3.16
3472 7287 4.378459 CGTTTCTTGTGATTAGGCCACTTC 60.378 45.833 5.01 0.00 35.66 3.01
3474 7289 2.642311 TCTTGTGATTAGGCCACTTCCA 59.358 45.455 5.01 0.00 35.66 3.53
3475 7290 3.073798 TCTTGTGATTAGGCCACTTCCAA 59.926 43.478 5.01 0.00 35.66 3.53
3477 7292 2.375174 TGTGATTAGGCCACTTCCAAGT 59.625 45.455 5.01 0.00 40.60 3.16
3488 7303 1.070601 ACTTCCAAGTGCAAAATGGCC 59.929 47.619 0.00 0.00 37.98 5.36
3492 7307 0.860533 CAAGTGCAAAATGGCCAACG 59.139 50.000 10.96 0.00 0.00 4.10
3493 7308 0.463620 AAGTGCAAAATGGCCAACGT 59.536 45.000 10.96 0.00 0.00 3.99
3495 7310 1.593750 TGCAAAATGGCCAACGTGC 60.594 52.632 23.84 23.84 0.00 5.34
3497 7312 1.830368 GCAAAATGGCCAACGTGCAC 61.830 55.000 25.01 6.82 32.29 4.57
3503 7318 0.176680 TGGCCAACGTGCACAAAAAT 59.823 45.000 18.64 0.00 0.00 1.82
3505 7320 0.858583 GCCAACGTGCACAAAAATCC 59.141 50.000 18.64 0.00 0.00 3.01
3508 7323 2.126467 CAACGTGCACAAAAATCCTGG 58.874 47.619 18.64 0.00 0.00 4.45
3511 7326 1.539388 CGTGCACAAAAATCCTGGCTA 59.461 47.619 18.64 0.00 0.00 3.93
3514 7329 3.445096 GTGCACAAAAATCCTGGCTATCT 59.555 43.478 13.17 0.00 0.00 1.98
3517 7332 4.340381 GCACAAAAATCCTGGCTATCTCAT 59.660 41.667 0.00 0.00 0.00 2.90
3520 7335 7.255730 GCACAAAAATCCTGGCTATCTCATAAT 60.256 37.037 0.00 0.00 0.00 1.28
3521 7336 8.636213 CACAAAAATCCTGGCTATCTCATAATT 58.364 33.333 0.00 0.00 0.00 1.40
3525 7340 9.525826 AAAATCCTGGCTATCTCATAATTAAGG 57.474 33.333 0.00 0.00 0.00 2.69
3528 7343 8.454859 TCCTGGCTATCTCATAATTAAGGAAT 57.545 34.615 0.00 0.00 0.00 3.01
3529 7344 9.560860 TCCTGGCTATCTCATAATTAAGGAATA 57.439 33.333 0.00 0.00 0.00 1.75
3530 7345 9.606631 CCTGGCTATCTCATAATTAAGGAATAC 57.393 37.037 0.00 0.00 0.00 1.89
3532 7347 8.258007 TGGCTATCTCATAATTAAGGAATACGG 58.742 37.037 0.00 0.00 0.00 4.02
3534 7851 8.475639 GCTATCTCATAATTAAGGAATACGGGA 58.524 37.037 0.00 0.00 0.00 5.14
3552 7869 3.440173 CGGGAGTATGTTTTTGCAGTGAT 59.560 43.478 0.00 0.00 0.00 3.06
3558 7875 7.653311 GGAGTATGTTTTTGCAGTGATTTCTTT 59.347 33.333 0.00 0.00 0.00 2.52
3560 7877 8.819974 AGTATGTTTTTGCAGTGATTTCTTTTG 58.180 29.630 0.00 0.00 0.00 2.44
3568 7885 9.979578 TTTGCAGTGATTTCTTTTGTATTATGT 57.020 25.926 0.00 0.00 0.00 2.29
3569 7886 9.624697 TTGCAGTGATTTCTTTTGTATTATGTC 57.375 29.630 0.00 0.00 0.00 3.06
3570 7887 8.243426 TGCAGTGATTTCTTTTGTATTATGTCC 58.757 33.333 0.00 0.00 0.00 4.02
3571 7888 7.702348 GCAGTGATTTCTTTTGTATTATGTCCC 59.298 37.037 0.00 0.00 0.00 4.46
3572 7889 8.960591 CAGTGATTTCTTTTGTATTATGTCCCT 58.039 33.333 0.00 0.00 0.00 4.20
3573 7890 9.533831 AGTGATTTCTTTTGTATTATGTCCCTT 57.466 29.630 0.00 0.00 0.00 3.95
3574 7891 9.573133 GTGATTTCTTTTGTATTATGTCCCTTG 57.427 33.333 0.00 0.00 0.00 3.61
3575 7892 9.308000 TGATTTCTTTTGTATTATGTCCCTTGT 57.692 29.630 0.00 0.00 0.00 3.16
3578 7895 9.974980 TTTCTTTTGTATTATGTCCCTTGTTTC 57.025 29.630 0.00 0.00 0.00 2.78
3579 7896 8.698973 TCTTTTGTATTATGTCCCTTGTTTCA 57.301 30.769 0.00 0.00 0.00 2.69
3580 7897 9.308000 TCTTTTGTATTATGTCCCTTGTTTCAT 57.692 29.630 0.00 0.00 0.00 2.57
3585 7902 9.967451 TGTATTATGTCCCTTGTTTCATAAAGA 57.033 29.630 0.00 0.00 36.69 2.52
3587 7904 7.938140 TTATGTCCCTTGTTTCATAAAGAGG 57.062 36.000 0.00 0.00 32.31 3.69
3589 7906 6.442541 TGTCCCTTGTTTCATAAAGAGGTA 57.557 37.500 0.00 0.00 0.00 3.08
3590 7907 6.843752 TGTCCCTTGTTTCATAAAGAGGTAA 58.156 36.000 0.00 0.00 0.00 2.85
3591 7908 7.466804 TGTCCCTTGTTTCATAAAGAGGTAAT 58.533 34.615 0.00 0.00 0.00 1.89
3592 7909 8.607713 TGTCCCTTGTTTCATAAAGAGGTAATA 58.392 33.333 0.00 0.00 0.00 0.98
3593 7910 9.628500 GTCCCTTGTTTCATAAAGAGGTAATAT 57.372 33.333 0.00 0.00 0.00 1.28
3594 7911 9.847224 TCCCTTGTTTCATAAAGAGGTAATATC 57.153 33.333 0.00 0.00 0.00 1.63
3595 7912 9.627123 CCCTTGTTTCATAAAGAGGTAATATCA 57.373 33.333 0.00 0.00 0.00 2.15
3606 7923 6.102897 AGAGGTAATATCACAGTATGGTGC 57.897 41.667 0.00 0.00 43.62 5.01
3607 7924 5.841237 AGAGGTAATATCACAGTATGGTGCT 59.159 40.000 0.00 0.00 43.62 4.40
3608 7925 6.327626 AGAGGTAATATCACAGTATGGTGCTT 59.672 38.462 0.00 0.00 43.62 3.91
3609 7926 6.291377 AGGTAATATCACAGTATGGTGCTTG 58.709 40.000 0.00 0.00 43.62 4.01
3611 7928 6.765989 GGTAATATCACAGTATGGTGCTTGAA 59.234 38.462 0.00 0.00 43.62 2.69
3612 7929 6.683974 AATATCACAGTATGGTGCTTGAAC 57.316 37.500 0.00 0.00 43.62 3.18
3613 7930 3.769739 TCACAGTATGGTGCTTGAACT 57.230 42.857 0.00 0.00 43.62 3.01
3614 7931 4.085357 TCACAGTATGGTGCTTGAACTT 57.915 40.909 0.00 0.00 43.62 2.66
3619 7936 5.359576 ACAGTATGGTGCTTGAACTTTGAAA 59.640 36.000 0.00 0.00 43.62 2.69
3620 7937 6.127479 ACAGTATGGTGCTTGAACTTTGAAAA 60.127 34.615 0.00 0.00 43.62 2.29
3621 7938 6.925165 CAGTATGGTGCTTGAACTTTGAAAAT 59.075 34.615 0.00 0.00 0.00 1.82
3623 7940 8.082242 AGTATGGTGCTTGAACTTTGAAAATAC 58.918 33.333 0.00 0.00 0.00 1.89
3625 7942 6.272318 TGGTGCTTGAACTTTGAAAATACAG 58.728 36.000 0.00 0.00 0.00 2.74
3626 7943 6.096141 TGGTGCTTGAACTTTGAAAATACAGA 59.904 34.615 0.00 0.00 0.00 3.41
3627 7944 7.147976 GGTGCTTGAACTTTGAAAATACAGAT 58.852 34.615 0.00 0.00 0.00 2.90
3628 7945 7.653311 GGTGCTTGAACTTTGAAAATACAGATT 59.347 33.333 0.00 0.00 0.00 2.40
3629 7946 9.677567 GTGCTTGAACTTTGAAAATACAGATTA 57.322 29.630 0.00 0.00 0.00 1.75
3634 7951 9.349713 TGAACTTTGAAAATACAGATTAGTGGT 57.650 29.630 0.00 0.00 0.00 4.16
3635 7952 9.827411 GAACTTTGAAAATACAGATTAGTGGTC 57.173 33.333 0.00 0.00 0.00 4.02
3636 7953 8.918202 ACTTTGAAAATACAGATTAGTGGTCA 57.082 30.769 0.00 0.00 0.00 4.02
3637 7954 9.520515 ACTTTGAAAATACAGATTAGTGGTCAT 57.479 29.630 0.00 0.00 0.00 3.06
3638 7955 9.994432 CTTTGAAAATACAGATTAGTGGTCATC 57.006 33.333 0.00 0.00 0.00 2.92
3640 7957 7.629157 TGAAAATACAGATTAGTGGTCATCCA 58.371 34.615 0.00 0.00 42.05 3.41
3641 7958 8.106462 TGAAAATACAGATTAGTGGTCATCCAA 58.894 33.333 0.00 0.00 46.15 3.53
3642 7959 7.865706 AAATACAGATTAGTGGTCATCCAAC 57.134 36.000 0.00 0.00 46.15 3.77
3644 7961 5.505181 ACAGATTAGTGGTCATCCAACTT 57.495 39.130 0.00 0.00 46.15 2.66
3645 7962 5.248640 ACAGATTAGTGGTCATCCAACTTG 58.751 41.667 0.00 0.00 46.15 3.16
3646 7963 4.095483 CAGATTAGTGGTCATCCAACTTGC 59.905 45.833 0.00 0.00 46.15 4.01
3647 7964 2.093306 TAGTGGTCATCCAACTTGCG 57.907 50.000 0.00 0.00 46.15 4.85
3648 7965 0.108585 AGTGGTCATCCAACTTGCGT 59.891 50.000 0.00 0.00 46.15 5.24
3649 7966 0.951558 GTGGTCATCCAACTTGCGTT 59.048 50.000 0.00 0.00 46.15 4.84
3650 7967 1.069227 GTGGTCATCCAACTTGCGTTC 60.069 52.381 0.00 0.00 46.15 3.95
3653 7970 2.143122 GTCATCCAACTTGCGTTCTCA 58.857 47.619 0.00 0.00 0.00 3.27
3654 7971 2.744202 GTCATCCAACTTGCGTTCTCAT 59.256 45.455 0.00 0.00 0.00 2.90
3655 7972 2.743664 TCATCCAACTTGCGTTCTCATG 59.256 45.455 0.00 0.00 0.00 3.07
3667 8119 3.125146 GCGTTCTCATGCAAATACAGTCA 59.875 43.478 0.00 0.00 34.70 3.41
3673 8125 9.793252 GTTCTCATGCAAATACAGTCATTTTAT 57.207 29.630 0.00 0.00 0.00 1.40
3675 8127 9.176460 TCTCATGCAAATACAGTCATTTTATCA 57.824 29.630 0.00 0.00 0.00 2.15
3676 8128 9.447040 CTCATGCAAATACAGTCATTTTATCAG 57.553 33.333 0.00 0.00 0.00 2.90
3677 8129 8.959548 TCATGCAAATACAGTCATTTTATCAGT 58.040 29.630 0.00 0.00 0.00 3.41
3681 8133 9.884465 GCAAATACAGTCATTTTATCAGTATCC 57.116 33.333 0.00 0.00 0.00 2.59
3683 8135 8.833231 AATACAGTCATTTTATCAGTATCCGG 57.167 34.615 0.00 0.00 0.00 5.14
3684 8136 6.235231 ACAGTCATTTTATCAGTATCCGGT 57.765 37.500 0.00 0.00 0.00 5.28
3685 8137 6.049149 ACAGTCATTTTATCAGTATCCGGTG 58.951 40.000 0.00 0.00 0.00 4.94
3687 8139 6.538742 CAGTCATTTTATCAGTATCCGGTGTT 59.461 38.462 0.00 0.00 0.00 3.32
3688 8140 7.065803 CAGTCATTTTATCAGTATCCGGTGTTT 59.934 37.037 0.00 0.00 0.00 2.83
3690 8142 8.333186 GTCATTTTATCAGTATCCGGTGTTTAC 58.667 37.037 0.00 0.00 0.00 2.01
3691 8143 8.041919 TCATTTTATCAGTATCCGGTGTTTACA 58.958 33.333 0.00 0.00 0.00 2.41
3692 8144 8.836413 CATTTTATCAGTATCCGGTGTTTACAT 58.164 33.333 0.00 0.00 0.00 2.29
3694 8146 4.131649 TCAGTATCCGGTGTTTACATGG 57.868 45.455 0.00 0.00 0.00 3.66
3695 8147 2.612212 CAGTATCCGGTGTTTACATGGC 59.388 50.000 0.00 0.00 0.00 4.40
3696 8148 2.237643 AGTATCCGGTGTTTACATGGCA 59.762 45.455 0.00 0.00 0.00 4.92
3697 8149 2.435372 ATCCGGTGTTTACATGGCAT 57.565 45.000 0.00 0.00 0.00 4.40
3698 8150 1.458398 TCCGGTGTTTACATGGCATG 58.542 50.000 25.31 25.31 0.00 4.06
3699 8151 1.003696 TCCGGTGTTTACATGGCATGA 59.996 47.619 32.74 14.24 0.00 3.07
3700 8152 1.132262 CCGGTGTTTACATGGCATGAC 59.868 52.381 32.74 20.57 0.00 3.06
3702 8154 2.159531 CGGTGTTTACATGGCATGACTG 60.160 50.000 32.74 20.15 0.00 3.51
3703 8155 3.081061 GGTGTTTACATGGCATGACTGA 58.919 45.455 32.74 13.00 0.00 3.41
3704 8156 3.505680 GGTGTTTACATGGCATGACTGAA 59.494 43.478 32.74 17.19 0.00 3.02
3705 8157 4.022416 GGTGTTTACATGGCATGACTGAAA 60.022 41.667 32.74 21.22 0.00 2.69
3708 8160 4.764679 TTACATGGCATGACTGAAACAC 57.235 40.909 32.74 0.00 0.00 3.32
3709 8161 1.888512 ACATGGCATGACTGAAACACC 59.111 47.619 32.74 0.00 0.00 4.16
3711 8163 0.539438 TGGCATGACTGAAACACCCC 60.539 55.000 0.00 0.00 0.00 4.95
3712 8164 0.251341 GGCATGACTGAAACACCCCT 60.251 55.000 0.00 0.00 0.00 4.79
3713 8165 0.883833 GCATGACTGAAACACCCCTG 59.116 55.000 0.00 0.00 0.00 4.45
3715 8167 0.773644 ATGACTGAAACACCCCTGCT 59.226 50.000 0.00 0.00 0.00 4.24
3718 8170 1.338020 GACTGAAACACCCCTGCTTTG 59.662 52.381 0.00 0.00 0.00 2.77
3719 8171 1.341976 ACTGAAACACCCCTGCTTTGT 60.342 47.619 0.00 0.00 0.00 2.83
3722 8174 2.569404 TGAAACACCCCTGCTTTGTTTT 59.431 40.909 0.84 0.00 42.19 2.43
3723 8175 3.008485 TGAAACACCCCTGCTTTGTTTTT 59.992 39.130 0.84 0.00 42.19 1.94
3724 8176 2.979814 ACACCCCTGCTTTGTTTTTC 57.020 45.000 0.00 0.00 0.00 2.29
3725 8177 2.183679 ACACCCCTGCTTTGTTTTTCA 58.816 42.857 0.00 0.00 0.00 2.69
3726 8178 2.771372 ACACCCCTGCTTTGTTTTTCAT 59.229 40.909 0.00 0.00 0.00 2.57
3727 8179 3.199727 ACACCCCTGCTTTGTTTTTCATT 59.800 39.130 0.00 0.00 0.00 2.57
3729 8181 2.549329 CCCCTGCTTTGTTTTTCATTGC 59.451 45.455 0.00 0.00 0.00 3.56
3730 8182 3.204526 CCCTGCTTTGTTTTTCATTGCA 58.795 40.909 0.00 0.00 35.00 4.08
3732 8184 3.622163 CCTGCTTTGTTTTTCATTGCACA 59.378 39.130 0.00 0.00 33.58 4.57
3733 8185 4.260456 CCTGCTTTGTTTTTCATTGCACAG 60.260 41.667 0.00 0.00 33.58 3.66
3734 8186 4.502016 TGCTTTGTTTTTCATTGCACAGA 58.498 34.783 0.00 0.00 32.74 3.41
3735 8187 4.934001 TGCTTTGTTTTTCATTGCACAGAA 59.066 33.333 0.00 0.00 32.74 3.02
3736 8188 5.063691 TGCTTTGTTTTTCATTGCACAGAAG 59.936 36.000 0.00 0.00 32.74 2.85
3738 8190 3.456280 TGTTTTTCATTGCACAGAAGCC 58.544 40.909 0.00 0.00 0.00 4.35
3739 8191 2.802247 GTTTTTCATTGCACAGAAGCCC 59.198 45.455 0.00 0.00 0.00 5.19
3740 8192 0.968405 TTTCATTGCACAGAAGCCCC 59.032 50.000 0.00 0.00 0.00 5.80
3741 8193 0.899717 TTCATTGCACAGAAGCCCCC 60.900 55.000 0.00 0.00 0.00 5.40
3744 8196 1.792757 ATTGCACAGAAGCCCCCTCA 61.793 55.000 0.00 0.00 0.00 3.86
3745 8197 2.005606 TTGCACAGAAGCCCCCTCAA 62.006 55.000 0.00 0.00 0.00 3.02
3746 8198 1.973812 GCACAGAAGCCCCCTCAAC 60.974 63.158 0.00 0.00 0.00 3.18
3747 8199 1.455849 CACAGAAGCCCCCTCAACA 59.544 57.895 0.00 0.00 0.00 3.33
3749 8201 0.178990 ACAGAAGCCCCCTCAACAAC 60.179 55.000 0.00 0.00 0.00 3.32
3750 8202 0.178992 CAGAAGCCCCCTCAACAACA 60.179 55.000 0.00 0.00 0.00 3.33
3751 8203 0.178990 AGAAGCCCCCTCAACAACAC 60.179 55.000 0.00 0.00 0.00 3.32
3754 8206 0.032615 AGCCCCCTCAACAACACAAA 60.033 50.000 0.00 0.00 0.00 2.83
3755 8207 1.047801 GCCCCCTCAACAACACAAAT 58.952 50.000 0.00 0.00 0.00 2.32
3756 8208 1.270252 GCCCCCTCAACAACACAAATG 60.270 52.381 0.00 0.00 0.00 2.32
3757 8209 1.344114 CCCCCTCAACAACACAAATGG 59.656 52.381 0.00 0.00 0.00 3.16
3758 8210 1.344114 CCCCTCAACAACACAAATGGG 59.656 52.381 0.00 0.00 0.00 4.00
3759 8211 2.038659 CCCTCAACAACACAAATGGGT 58.961 47.619 0.00 0.00 0.00 4.51
3760 8212 2.035832 CCCTCAACAACACAAATGGGTC 59.964 50.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.869065 TCGTTGCTTCTATAAACCCTGG 58.131 45.455 0.00 0.00 0.00 4.45
17 18 7.148407 CCAATTTACTCTGTTCGTTGCTTCTAT 60.148 37.037 0.00 0.00 0.00 1.98
22 23 3.502211 CCCAATTTACTCTGTTCGTTGCT 59.498 43.478 0.00 0.00 0.00 3.91
28 29 1.743394 CCGGCCCAATTTACTCTGTTC 59.257 52.381 0.00 0.00 0.00 3.18
31 32 1.384222 GGCCGGCCCAATTTACTCTG 61.384 60.000 36.64 0.00 0.00 3.35
47 48 2.125106 GACGACTGACCATGGGCC 60.125 66.667 17.19 7.34 0.00 5.80
55 56 2.098680 CCGAGCGAGACGACTGAC 59.901 66.667 0.00 0.00 0.00 3.51
70 71 2.240500 GCTGCTTCGCATAGACCCG 61.241 63.158 0.00 0.00 38.13 5.28
84 85 0.527385 TTGCGTCAAAAAGTGGCTGC 60.527 50.000 0.00 0.00 33.70 5.25
121 122 2.941891 TTCTCGCGTACTGCAAAAAG 57.058 45.000 5.77 0.00 46.97 2.27
125 126 3.435566 CTCTATTTCTCGCGTACTGCAA 58.564 45.455 5.77 0.00 46.97 4.08
134 135 2.282820 CAGAAACGCCTCTATTTCTCGC 59.717 50.000 0.00 0.00 42.03 5.03
161 162 0.240145 GCCCAAGTAACGACCTTTGC 59.760 55.000 0.00 0.00 0.00 3.68
162 163 0.879090 GGCCCAAGTAACGACCTTTG 59.121 55.000 0.00 0.00 0.00 2.77
165 166 2.951101 CGGGCCCAAGTAACGACCT 61.951 63.158 24.92 0.00 0.00 3.85
168 169 2.658422 GTCGGGCCCAAGTAACGA 59.342 61.111 24.92 8.43 0.00 3.85
182 183 3.926616 ACAGAGAAACAGTAATGGGTCG 58.073 45.455 0.00 0.00 0.00 4.79
267 268 5.705609 AGGAATGTTGCGTCAGTATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
274 275 2.549754 ACAAGAAGGAATGTTGCGTCAG 59.450 45.455 3.49 0.00 35.77 3.51
386 387 6.091986 GTGCATTTCCACAAAACAGAAAAGAA 59.908 34.615 0.00 0.00 35.80 2.52
395 396 3.182967 TGTTCGTGCATTTCCACAAAAC 58.817 40.909 0.00 0.00 35.47 2.43
416 417 7.148018 ACCAGCTCATCGAATTTGATGTAAAAT 60.148 33.333 27.54 12.75 44.82 1.82
433 434 4.701651 TCATCGAATTTGAAACCAGCTCAT 59.298 37.500 0.00 0.00 0.00 2.90
497 499 6.739112 ACTCTTGAAGTAATTTGAAACCAGC 58.261 36.000 0.00 0.00 36.07 4.85
500 502 6.978080 TGCAACTCTTGAAGTAATTTGAAACC 59.022 34.615 0.00 0.00 37.17 3.27
501 503 7.306225 GCTGCAACTCTTGAAGTAATTTGAAAC 60.306 37.037 0.00 0.00 38.65 2.78
507 3265 3.189287 CCGCTGCAACTCTTGAAGTAATT 59.811 43.478 0.00 0.00 38.65 1.40
519 3277 2.282391 TTGCCATCCGCTGCAACT 60.282 55.556 0.00 0.00 42.19 3.16
610 3402 3.039981 ATCTGGCTAGCCCCCTCCA 62.040 63.158 30.81 10.25 34.56 3.86
634 3426 2.969821 TGTTGTGAACTAGGCCCATT 57.030 45.000 0.00 0.00 0.00 3.16
731 3646 1.739667 GGCCAAGCTGGACGTTTTT 59.260 52.632 0.00 0.00 40.96 1.94
732 3647 3.443588 GGCCAAGCTGGACGTTTT 58.556 55.556 0.00 0.00 40.96 2.43
1038 3962 4.657013 GACCAAAGGATCTCAGGACTTTT 58.343 43.478 0.00 0.00 31.31 2.27
1083 4007 1.471119 GGTAGGACGAGATGGACACA 58.529 55.000 0.00 0.00 0.00 3.72
1098 4022 3.470888 CTCTGGTGGGCCGGGTAG 61.471 72.222 2.18 0.00 41.53 3.18
1099 4023 3.857521 AACTCTGGTGGGCCGGGTA 62.858 63.158 2.18 0.00 41.53 3.69
1150 4074 2.125064 CAGACTAAGCATCGGCGTCTG 61.125 57.143 6.85 6.12 44.08 3.51
1178 4102 3.670203 CGATCACAATACGAGCCAAAAC 58.330 45.455 0.00 0.00 0.00 2.43
1179 4103 2.095213 GCGATCACAATACGAGCCAAAA 59.905 45.455 0.00 0.00 0.00 2.44
1236 4160 3.047877 CCCTTGCCGTCAACGTCC 61.048 66.667 1.48 0.00 37.74 4.79
1301 4225 1.478510 CTTCGAGCCTGTAGATGTGGT 59.521 52.381 0.00 0.00 0.00 4.16
1317 4241 1.067582 GGTCCCGATACTGCCTTCG 59.932 63.158 0.00 0.00 35.19 3.79
1414 4338 4.264253 TCAACATAGCCCACTTCTTGATG 58.736 43.478 0.00 0.00 0.00 3.07
1415 4339 4.574674 TCAACATAGCCCACTTCTTGAT 57.425 40.909 0.00 0.00 0.00 2.57
1434 4358 5.786121 AAAGAATCCCCTTCAAGAGATCA 57.214 39.130 0.00 0.00 36.24 2.92
1490 4414 2.231235 AGGTTCGGCAATGGAATGAAAC 59.769 45.455 0.00 0.00 0.00 2.78
1566 4490 1.004595 CATCAGTGCAGGTGACATCG 58.995 55.000 0.74 0.00 0.00 3.84
1585 4509 7.850982 CAGCTCAACACATACGATTTTATAACC 59.149 37.037 0.00 0.00 0.00 2.85
1597 4521 5.886960 AAATCTTCCAGCTCAACACATAC 57.113 39.130 0.00 0.00 0.00 2.39
1599 4523 6.183360 CGAATAAATCTTCCAGCTCAACACAT 60.183 38.462 0.00 0.00 0.00 3.21
1644 4568 8.084684 TCAAAATCATAGAGTACATCAGGATCG 58.915 37.037 0.00 0.00 0.00 3.69
1660 4584 9.117183 CTCAGATGGATCAACTTCAAAATCATA 57.883 33.333 0.00 0.00 0.00 2.15
1684 4608 1.398390 CATGCGCTTTACCACCTTCTC 59.602 52.381 9.73 0.00 0.00 2.87
1685 4609 1.271379 ACATGCGCTTTACCACCTTCT 60.271 47.619 9.73 0.00 0.00 2.85
1700 4624 0.314935 CCTCCAACCAACACACATGC 59.685 55.000 0.00 0.00 0.00 4.06
1705 4629 1.227823 CGAGCCTCCAACCAACACA 60.228 57.895 0.00 0.00 0.00 3.72
1735 4659 2.059756 TGGTCCCAAAAGATCTCCCT 57.940 50.000 0.00 0.00 0.00 4.20
1743 4667 2.926778 TTTGCCAATGGTCCCAAAAG 57.073 45.000 0.00 0.00 0.00 2.27
1839 4763 7.579723 GCTCTAGAAGATGGTTTCAGGTTCTTA 60.580 40.741 0.00 0.00 33.51 2.10
2056 4980 6.142480 CGATAATTCTTCGTCACACAGGATAC 59.858 42.308 3.26 0.00 32.08 2.24
2063 4987 4.326278 TCTTGCGATAATTCTTCGTCACAC 59.674 41.667 11.10 0.00 38.81 3.82
2129 5053 3.269381 AGGGGAATAACATTCCTCAGCAA 59.731 43.478 17.87 0.00 41.56 3.91
2175 5574 6.127925 TGCTCAAACCACAGCTAATTGATAAG 60.128 38.462 0.00 0.00 36.53 1.73
2295 5694 4.755266 ACCGTACAGCCTGAATAAGAAT 57.245 40.909 0.00 0.00 0.00 2.40
2314 5713 9.185680 ACCATGGTTTCAGTCTTAATAATTACC 57.814 33.333 13.00 0.00 0.00 2.85
2409 5808 5.150715 TCATGCTGATTACTGAGGACCTAT 58.849 41.667 0.00 0.00 0.00 2.57
2471 5870 9.601217 ACTTGTTCATCACTATAGATAACCAAC 57.399 33.333 6.78 3.06 0.00 3.77
2526 5925 3.508012 AGCTACGTCCATCTAAGGCATAG 59.492 47.826 0.00 0.00 0.00 2.23
2597 5996 5.239306 CAGCAGAAGAACACAAGGATAACAA 59.761 40.000 0.00 0.00 0.00 2.83
2608 6007 4.072131 TGGAAATACCAGCAGAAGAACAC 58.928 43.478 0.00 0.00 44.64 3.32
2674 6073 2.288886 ACTAGTGTTTTCCAGGAGCGAC 60.289 50.000 0.00 0.00 0.00 5.19
2697 6096 0.035458 CCTCTTCGGCTGGAAACTGT 59.965 55.000 0.00 0.00 33.34 3.55
2718 6117 1.442769 CATTGTCGAACCCCTCAGTG 58.557 55.000 0.00 0.00 0.00 3.66
2779 6178 1.305219 GCACGAGCTTATTGGTGGCA 61.305 55.000 0.00 0.00 37.91 4.92
2795 6194 3.609853 TGTGACCTGATAAGGATTGCAC 58.390 45.455 1.89 6.22 0.00 4.57
2815 6214 8.514594 ACATACCAAGATTCACAAATGTTACTG 58.485 33.333 0.00 0.00 28.03 2.74
2863 6262 6.068461 TGTCTAAGGTGGTTTATATGGCAA 57.932 37.500 0.00 0.00 0.00 4.52
2865 6264 6.354130 TCTTGTCTAAGGTGGTTTATATGGC 58.646 40.000 0.00 0.00 34.59 4.40
2912 6311 9.784531 ACATTTCTCTATTTGAATACCATCGAT 57.215 29.630 0.00 0.00 0.00 3.59
2923 6322 4.334552 TGCAGGCACATTTCTCTATTTGA 58.665 39.130 0.00 0.00 0.00 2.69
2957 6356 0.592637 TGCGATGCTTGACAACCTTG 59.407 50.000 0.00 0.00 0.00 3.61
2968 6367 3.543680 AACATTAGTAGGTGCGATGCT 57.456 42.857 0.00 0.00 0.00 3.79
3082 6481 6.770746 ATGAATGAAGATCCTTGTCCAAAG 57.229 37.500 0.00 0.00 0.00 2.77
3159 6561 7.093354 CAGAACTGACACACATCTAACAGTAT 58.907 38.462 0.00 0.00 37.57 2.12
3161 6563 5.292765 CAGAACTGACACACATCTAACAGT 58.707 41.667 0.00 0.00 39.70 3.55
3162 6564 4.151335 GCAGAACTGACACACATCTAACAG 59.849 45.833 5.97 0.00 0.00 3.16
3163 6565 4.058124 GCAGAACTGACACACATCTAACA 58.942 43.478 5.97 0.00 0.00 2.41
3164 6566 3.121944 CGCAGAACTGACACACATCTAAC 59.878 47.826 5.97 0.00 0.00 2.34
3166 6568 2.926586 GCGCAGAACTGACACACATCTA 60.927 50.000 0.30 0.00 0.00 1.98
3167 6569 1.788258 CGCAGAACTGACACACATCT 58.212 50.000 5.97 0.00 0.00 2.90
3168 6570 0.164647 GCGCAGAACTGACACACATC 59.835 55.000 0.30 0.00 0.00 3.06
3169 6571 0.250038 AGCGCAGAACTGACACACAT 60.250 50.000 11.47 0.00 0.00 3.21
3172 6574 3.586100 TTATAGCGCAGAACTGACACA 57.414 42.857 11.47 0.00 0.00 3.72
3177 6579 2.868583 ACAGCATTATAGCGCAGAACTG 59.131 45.455 11.47 10.05 40.15 3.16
3179 6581 3.951979 AACAGCATTATAGCGCAGAAC 57.048 42.857 11.47 0.00 40.15 3.01
3180 6582 6.618287 ATTAAACAGCATTATAGCGCAGAA 57.382 33.333 11.47 0.00 40.15 3.02
3181 6583 6.618287 AATTAAACAGCATTATAGCGCAGA 57.382 33.333 11.47 0.00 40.15 4.26
3182 6584 8.955061 ATAAATTAAACAGCATTATAGCGCAG 57.045 30.769 11.47 0.00 40.15 5.18
3316 6864 3.900966 ATTTAGGAACAGACGGGGTAC 57.099 47.619 0.00 0.00 0.00 3.34
3320 6868 7.767198 TCAAACTTATATTTAGGAACAGACGGG 59.233 37.037 0.00 0.00 0.00 5.28
3338 6886 8.358148 GGATGTATACGGAATCTCTCAAACTTA 58.642 37.037 0.00 0.00 0.00 2.24
3345 6896 6.093771 ACATACGGATGTATACGGAATCTCTC 59.906 42.308 12.79 0.00 44.77 3.20
3355 6906 5.180117 ACACGGACTACATACGGATGTATAC 59.820 44.000 20.64 16.07 45.42 1.47
3356 6907 5.308014 ACACGGACTACATACGGATGTATA 58.692 41.667 20.64 1.71 45.42 1.47
3358 6909 3.544684 ACACGGACTACATACGGATGTA 58.455 45.455 19.32 19.32 44.77 2.29
3360 6911 3.113322 CAACACGGACTACATACGGATG 58.887 50.000 5.94 5.94 39.16 3.51
3361 6912 3.018856 TCAACACGGACTACATACGGAT 58.981 45.455 0.00 0.00 0.00 4.18
3363 6914 2.925578 TCAACACGGACTACATACGG 57.074 50.000 0.00 0.00 0.00 4.02
3364 6915 5.100259 AGATTTCAACACGGACTACATACG 58.900 41.667 0.00 0.00 0.00 3.06
3366 6917 6.525578 AGAGATTTCAACACGGACTACATA 57.474 37.500 0.00 0.00 0.00 2.29
3368 6919 4.866508 AGAGATTTCAACACGGACTACA 57.133 40.909 0.00 0.00 0.00 2.74
3369 6920 7.647907 TTTTAGAGATTTCAACACGGACTAC 57.352 36.000 0.00 0.00 0.00 2.73
3370 6921 8.842358 ATTTTTAGAGATTTCAACACGGACTA 57.158 30.769 0.00 0.00 0.00 2.59
3371 6922 7.745620 ATTTTTAGAGATTTCAACACGGACT 57.254 32.000 0.00 0.00 0.00 3.85
3388 7203 9.903682 CAGCATTGGGTGAGATATAATTTTTAG 57.096 33.333 0.00 0.00 45.29 1.85
3389 7204 9.420118 ACAGCATTGGGTGAGATATAATTTTTA 57.580 29.630 0.42 0.00 45.29 1.52
3394 7209 7.321717 ACTACAGCATTGGGTGAGATATAAT 57.678 36.000 0.42 0.00 45.29 1.28
3396 7211 6.210784 GGTACTACAGCATTGGGTGAGATATA 59.789 42.308 0.42 0.00 45.29 0.86
3397 7212 5.012148 GGTACTACAGCATTGGGTGAGATAT 59.988 44.000 0.42 0.00 45.29 1.63
3398 7213 4.344102 GGTACTACAGCATTGGGTGAGATA 59.656 45.833 0.42 0.00 45.29 1.98
3399 7214 3.134804 GGTACTACAGCATTGGGTGAGAT 59.865 47.826 0.42 0.00 45.29 2.75
3400 7215 2.500098 GGTACTACAGCATTGGGTGAGA 59.500 50.000 0.42 0.00 45.29 3.27
3402 7217 2.261729 TGGTACTACAGCATTGGGTGA 58.738 47.619 0.42 0.00 45.29 4.02
3403 7218 3.281727 ATGGTACTACAGCATTGGGTG 57.718 47.619 0.00 0.00 42.77 4.61
3410 7225 2.967362 CCACGAAATGGTACTACAGCA 58.033 47.619 0.00 0.00 44.46 4.41
3421 7236 4.217550 ACTTATCAACCAACCCACGAAATG 59.782 41.667 0.00 0.00 0.00 2.32
3422 7237 4.403734 ACTTATCAACCAACCCACGAAAT 58.596 39.130 0.00 0.00 0.00 2.17
3423 7238 3.822940 ACTTATCAACCAACCCACGAAA 58.177 40.909 0.00 0.00 0.00 3.46
3424 7239 3.495434 ACTTATCAACCAACCCACGAA 57.505 42.857 0.00 0.00 0.00 3.85
3425 7240 3.495434 AACTTATCAACCAACCCACGA 57.505 42.857 0.00 0.00 0.00 4.35
3426 7241 5.454520 GTTAAACTTATCAACCAACCCACG 58.545 41.667 0.00 0.00 0.00 4.94
3427 7242 5.008911 ACGTTAAACTTATCAACCAACCCAC 59.991 40.000 0.00 0.00 0.00 4.61
3428 7243 5.131784 ACGTTAAACTTATCAACCAACCCA 58.868 37.500 0.00 0.00 0.00 4.51
3429 7244 5.694231 ACGTTAAACTTATCAACCAACCC 57.306 39.130 0.00 0.00 0.00 4.11
3430 7245 7.420002 AGAAACGTTAAACTTATCAACCAACC 58.580 34.615 0.00 0.00 0.00 3.77
3431 7246 8.739461 CAAGAAACGTTAAACTTATCAACCAAC 58.261 33.333 0.00 0.00 0.00 3.77
3432 7247 8.460428 ACAAGAAACGTTAAACTTATCAACCAA 58.540 29.630 0.00 0.00 0.00 3.67
3433 7248 7.911205 CACAAGAAACGTTAAACTTATCAACCA 59.089 33.333 0.00 0.00 0.00 3.67
3434 7249 8.124199 TCACAAGAAACGTTAAACTTATCAACC 58.876 33.333 0.00 0.00 0.00 3.77
3442 7257 6.293790 GGCCTAATCACAAGAAACGTTAAACT 60.294 38.462 0.00 0.00 0.00 2.66
3447 7262 3.252458 GTGGCCTAATCACAAGAAACGTT 59.748 43.478 3.32 0.00 35.39 3.99
3448 7263 2.812011 GTGGCCTAATCACAAGAAACGT 59.188 45.455 3.32 0.00 35.39 3.99
3449 7264 3.074412 AGTGGCCTAATCACAAGAAACG 58.926 45.455 3.32 0.00 37.58 3.60
3450 7265 4.082733 GGAAGTGGCCTAATCACAAGAAAC 60.083 45.833 3.32 0.00 37.58 2.78
3451 7266 4.079253 GGAAGTGGCCTAATCACAAGAAA 58.921 43.478 3.32 0.00 37.58 2.52
3452 7267 3.073798 TGGAAGTGGCCTAATCACAAGAA 59.926 43.478 3.32 0.00 37.58 2.52
3453 7268 2.642311 TGGAAGTGGCCTAATCACAAGA 59.358 45.455 3.32 0.00 37.58 3.02
3457 7272 3.073274 ACTTGGAAGTGGCCTAATCAC 57.927 47.619 3.32 0.00 37.98 3.06
3469 7284 1.070445 TGGCCATTTTGCACTTGGAAG 59.930 47.619 0.00 0.00 31.94 3.46
3470 7285 1.126488 TGGCCATTTTGCACTTGGAA 58.874 45.000 0.00 0.00 31.94 3.53
3471 7286 1.126488 TTGGCCATTTTGCACTTGGA 58.874 45.000 6.09 0.00 31.94 3.53
3472 7287 1.228533 GTTGGCCATTTTGCACTTGG 58.771 50.000 6.09 4.70 0.00 3.61
3474 7289 0.463620 ACGTTGGCCATTTTGCACTT 59.536 45.000 6.09 0.00 0.00 3.16
3475 7290 0.249405 CACGTTGGCCATTTTGCACT 60.249 50.000 6.09 0.00 0.00 4.40
3477 7292 1.593750 GCACGTTGGCCATTTTGCA 60.594 52.632 21.94 0.00 0.00 4.08
3478 7293 1.593750 TGCACGTTGGCCATTTTGC 60.594 52.632 20.69 20.69 0.00 3.68
3479 7294 0.529337 TGTGCACGTTGGCCATTTTG 60.529 50.000 6.09 4.78 0.00 2.44
3480 7295 0.176680 TTGTGCACGTTGGCCATTTT 59.823 45.000 6.09 0.00 0.00 1.82
3484 7299 0.176680 ATTTTTGTGCACGTTGGCCA 59.823 45.000 13.13 0.00 0.00 5.36
3485 7300 0.858583 GATTTTTGTGCACGTTGGCC 59.141 50.000 13.13 0.00 0.00 5.36
3486 7301 0.858583 GGATTTTTGTGCACGTTGGC 59.141 50.000 13.13 0.00 0.00 4.52
3488 7303 2.126467 CCAGGATTTTTGTGCACGTTG 58.874 47.619 13.13 1.55 0.00 4.10
3492 7307 3.445096 AGATAGCCAGGATTTTTGTGCAC 59.555 43.478 10.75 10.75 0.00 4.57
3493 7308 3.696051 GAGATAGCCAGGATTTTTGTGCA 59.304 43.478 0.00 0.00 0.00 4.57
3495 7310 7.572523 TTATGAGATAGCCAGGATTTTTGTG 57.427 36.000 0.00 0.00 0.00 3.33
3503 7318 7.872061 TTCCTTAATTATGAGATAGCCAGGA 57.128 36.000 0.00 0.00 0.00 3.86
3505 7320 9.307121 CGTATTCCTTAATTATGAGATAGCCAG 57.693 37.037 0.04 0.00 0.00 4.85
3508 7323 8.475639 TCCCGTATTCCTTAATTATGAGATAGC 58.524 37.037 0.04 0.00 0.00 2.97
3511 7326 8.437274 ACTCCCGTATTCCTTAATTATGAGAT 57.563 34.615 0.04 0.00 0.00 2.75
3514 7329 9.096823 ACATACTCCCGTATTCCTTAATTATGA 57.903 33.333 0.04 0.00 34.14 2.15
3520 7335 7.148205 GCAAAAACATACTCCCGTATTCCTTAA 60.148 37.037 0.00 0.00 34.14 1.85
3521 7336 6.316890 GCAAAAACATACTCCCGTATTCCTTA 59.683 38.462 0.00 0.00 34.14 2.69
3524 7339 4.396790 TGCAAAAACATACTCCCGTATTCC 59.603 41.667 0.00 0.00 34.14 3.01
3525 7340 5.123344 ACTGCAAAAACATACTCCCGTATTC 59.877 40.000 0.00 0.00 34.14 1.75
3528 7343 3.749088 CACTGCAAAAACATACTCCCGTA 59.251 43.478 0.00 0.00 0.00 4.02
3529 7344 2.552315 CACTGCAAAAACATACTCCCGT 59.448 45.455 0.00 0.00 0.00 5.28
3530 7345 2.811431 TCACTGCAAAAACATACTCCCG 59.189 45.455 0.00 0.00 0.00 5.14
3532 7347 6.681777 AGAAATCACTGCAAAAACATACTCC 58.318 36.000 0.00 0.00 0.00 3.85
3534 7851 8.819974 CAAAAGAAATCACTGCAAAAACATACT 58.180 29.630 0.00 0.00 0.00 2.12
3535 7852 8.603181 ACAAAAGAAATCACTGCAAAAACATAC 58.397 29.630 0.00 0.00 0.00 2.39
3545 7862 7.702348 GGGACATAATACAAAAGAAATCACTGC 59.298 37.037 0.00 0.00 0.00 4.40
3546 7863 8.960591 AGGGACATAATACAAAAGAAATCACTG 58.039 33.333 0.00 0.00 0.00 3.66
3548 7865 9.573133 CAAGGGACATAATACAAAAGAAATCAC 57.427 33.333 0.00 0.00 0.00 3.06
3552 7869 9.974980 GAAACAAGGGACATAATACAAAAGAAA 57.025 29.630 0.00 0.00 0.00 2.52
3565 7882 5.892348 ACCTCTTTATGAAACAAGGGACAT 58.108 37.500 0.00 0.00 0.00 3.06
3567 7884 7.939784 ATTACCTCTTTATGAAACAAGGGAC 57.060 36.000 0.00 0.00 0.00 4.46
3568 7885 9.847224 GATATTACCTCTTTATGAAACAAGGGA 57.153 33.333 0.00 0.00 0.00 4.20
3569 7886 9.627123 TGATATTACCTCTTTATGAAACAAGGG 57.373 33.333 0.00 0.00 0.00 3.95
3580 7897 8.148351 GCACCATACTGTGATATTACCTCTTTA 58.852 37.037 0.00 0.00 38.55 1.85
3582 7899 6.327626 AGCACCATACTGTGATATTACCTCTT 59.672 38.462 0.00 0.00 38.55 2.85
3583 7900 5.841237 AGCACCATACTGTGATATTACCTCT 59.159 40.000 0.00 0.00 38.55 3.69
3584 7901 6.102897 AGCACCATACTGTGATATTACCTC 57.897 41.667 0.00 0.00 38.55 3.85
3585 7902 6.099701 TCAAGCACCATACTGTGATATTACCT 59.900 38.462 0.00 0.00 38.55 3.08
3587 7904 7.495934 AGTTCAAGCACCATACTGTGATATTAC 59.504 37.037 0.00 0.00 38.55 1.89
3589 7906 6.418101 AGTTCAAGCACCATACTGTGATATT 58.582 36.000 0.00 0.00 38.55 1.28
3590 7907 5.994250 AGTTCAAGCACCATACTGTGATAT 58.006 37.500 0.00 0.00 38.55 1.63
3591 7908 5.420725 AGTTCAAGCACCATACTGTGATA 57.579 39.130 0.00 0.00 38.55 2.15
3592 7909 4.292186 AGTTCAAGCACCATACTGTGAT 57.708 40.909 0.00 0.00 38.55 3.06
3593 7910 3.769739 AGTTCAAGCACCATACTGTGA 57.230 42.857 0.00 0.00 38.55 3.58
3594 7911 4.275689 TCAAAGTTCAAGCACCATACTGTG 59.724 41.667 0.00 0.00 39.29 3.66
3595 7912 4.460263 TCAAAGTTCAAGCACCATACTGT 58.540 39.130 0.00 0.00 0.00 3.55
3596 7913 5.437289 TTCAAAGTTCAAGCACCATACTG 57.563 39.130 0.00 0.00 0.00 2.74
3598 7915 7.865385 TGTATTTTCAAAGTTCAAGCACCATAC 59.135 33.333 0.00 0.00 0.00 2.39
3599 7916 7.946207 TGTATTTTCAAAGTTCAAGCACCATA 58.054 30.769 0.00 0.00 0.00 2.74
3600 7917 6.815089 TGTATTTTCAAAGTTCAAGCACCAT 58.185 32.000 0.00 0.00 0.00 3.55
3601 7918 6.096141 TCTGTATTTTCAAAGTTCAAGCACCA 59.904 34.615 0.00 0.00 0.00 4.17
3602 7919 6.503524 TCTGTATTTTCAAAGTTCAAGCACC 58.496 36.000 0.00 0.00 0.00 5.01
3603 7920 8.579682 AATCTGTATTTTCAAAGTTCAAGCAC 57.420 30.769 0.00 0.00 0.00 4.40
3604 7921 9.897744 CTAATCTGTATTTTCAAAGTTCAAGCA 57.102 29.630 0.00 0.00 0.00 3.91
3605 7922 9.899226 ACTAATCTGTATTTTCAAAGTTCAAGC 57.101 29.630 0.00 0.00 0.00 4.01
3608 7925 9.349713 ACCACTAATCTGTATTTTCAAAGTTCA 57.650 29.630 0.00 0.00 0.00 3.18
3609 7926 9.827411 GACCACTAATCTGTATTTTCAAAGTTC 57.173 33.333 0.00 0.00 0.00 3.01
3611 7928 8.918202 TGACCACTAATCTGTATTTTCAAAGT 57.082 30.769 0.00 0.00 0.00 2.66
3612 7929 9.994432 GATGACCACTAATCTGTATTTTCAAAG 57.006 33.333 0.00 0.00 0.00 2.77
3613 7930 8.956426 GGATGACCACTAATCTGTATTTTCAAA 58.044 33.333 0.00 0.00 35.97 2.69
3614 7931 8.106462 TGGATGACCACTAATCTGTATTTTCAA 58.894 33.333 0.00 0.00 41.77 2.69
3619 7936 7.200434 AGTTGGATGACCACTAATCTGTATT 57.800 36.000 0.00 0.00 46.80 1.89
3620 7937 6.814954 AGTTGGATGACCACTAATCTGTAT 57.185 37.500 0.00 0.00 46.80 2.29
3621 7938 6.406370 CAAGTTGGATGACCACTAATCTGTA 58.594 40.000 0.00 0.00 46.80 2.74
3623 7940 4.095483 GCAAGTTGGATGACCACTAATCTG 59.905 45.833 4.75 0.00 46.80 2.90
3625 7942 3.063997 CGCAAGTTGGATGACCACTAATC 59.936 47.826 4.75 0.00 46.80 1.75
3626 7943 3.009723 CGCAAGTTGGATGACCACTAAT 58.990 45.455 4.75 0.00 46.80 1.73
3627 7944 2.422597 CGCAAGTTGGATGACCACTAA 58.577 47.619 4.75 0.00 46.80 2.24
3628 7945 2.093306 CGCAAGTTGGATGACCACTA 57.907 50.000 4.75 0.00 46.80 2.74
3629 7946 2.932663 CGCAAGTTGGATGACCACT 58.067 52.632 4.75 0.00 46.80 4.00
3644 7961 3.073678 ACTGTATTTGCATGAGAACGCA 58.926 40.909 0.00 0.00 36.05 5.24
3645 7962 3.125146 TGACTGTATTTGCATGAGAACGC 59.875 43.478 0.00 0.00 0.00 4.84
3646 7963 4.926860 TGACTGTATTTGCATGAGAACG 57.073 40.909 0.00 0.00 0.00 3.95
3647 7964 9.793252 ATAAAATGACTGTATTTGCATGAGAAC 57.207 29.630 0.00 0.00 31.05 3.01
3649 7966 9.176460 TGATAAAATGACTGTATTTGCATGAGA 57.824 29.630 0.00 0.00 31.05 3.27
3650 7967 9.447040 CTGATAAAATGACTGTATTTGCATGAG 57.553 33.333 0.00 0.00 31.05 2.90
3655 7972 9.884465 GGATACTGATAAAATGACTGTATTTGC 57.116 33.333 0.00 0.00 32.09 3.68
3662 8114 6.049149 ACACCGGATACTGATAAAATGACTG 58.951 40.000 9.46 0.00 0.00 3.51
3663 8115 6.235231 ACACCGGATACTGATAAAATGACT 57.765 37.500 9.46 0.00 0.00 3.41
3667 8119 8.836413 CATGTAAACACCGGATACTGATAAAAT 58.164 33.333 9.46 0.00 0.00 1.82
3673 8125 3.680475 GCCATGTAAACACCGGATACTGA 60.680 47.826 9.46 0.00 0.00 3.41
3674 8126 2.612212 GCCATGTAAACACCGGATACTG 59.388 50.000 9.46 0.00 0.00 2.74
3675 8127 2.237643 TGCCATGTAAACACCGGATACT 59.762 45.455 9.46 0.00 0.00 2.12
3676 8128 2.634600 TGCCATGTAAACACCGGATAC 58.365 47.619 9.46 6.49 0.00 2.24
3677 8129 3.118223 TCATGCCATGTAAACACCGGATA 60.118 43.478 9.46 0.00 0.00 2.59
3678 8130 2.023673 CATGCCATGTAAACACCGGAT 58.976 47.619 9.46 0.00 0.00 4.18
3679 8131 1.003696 TCATGCCATGTAAACACCGGA 59.996 47.619 9.46 0.00 0.00 5.14
3680 8132 1.132262 GTCATGCCATGTAAACACCGG 59.868 52.381 4.31 0.00 0.00 5.28
3681 8133 2.083774 AGTCATGCCATGTAAACACCG 58.916 47.619 4.31 0.00 0.00 4.94
3683 8135 4.764679 TTCAGTCATGCCATGTAAACAC 57.235 40.909 4.31 0.00 0.00 3.32
3684 8136 4.582240 TGTTTCAGTCATGCCATGTAAACA 59.418 37.500 17.71 17.71 34.29 2.83
3685 8137 4.917415 GTGTTTCAGTCATGCCATGTAAAC 59.083 41.667 4.31 11.21 0.00 2.01
3687 8139 3.505680 GGTGTTTCAGTCATGCCATGTAA 59.494 43.478 4.31 0.00 0.00 2.41
3688 8140 3.081061 GGTGTTTCAGTCATGCCATGTA 58.919 45.455 4.31 0.00 0.00 2.29
3690 8142 1.203052 GGGTGTTTCAGTCATGCCATG 59.797 52.381 0.00 0.00 0.00 3.66
3691 8143 1.549203 GGGTGTTTCAGTCATGCCAT 58.451 50.000 0.00 0.00 0.00 4.40
3692 8144 0.539438 GGGGTGTTTCAGTCATGCCA 60.539 55.000 0.00 0.00 0.00 4.92
3694 8146 0.883833 CAGGGGTGTTTCAGTCATGC 59.116 55.000 0.00 0.00 0.00 4.06
3695 8147 0.883833 GCAGGGGTGTTTCAGTCATG 59.116 55.000 0.00 0.00 0.00 3.07
3696 8148 0.773644 AGCAGGGGTGTTTCAGTCAT 59.226 50.000 0.00 0.00 0.00 3.06
3697 8149 0.550914 AAGCAGGGGTGTTTCAGTCA 59.449 50.000 0.00 0.00 0.00 3.41
3698 8150 1.338020 CAAAGCAGGGGTGTTTCAGTC 59.662 52.381 0.00 0.00 0.00 3.51
3699 8151 1.341976 ACAAAGCAGGGGTGTTTCAGT 60.342 47.619 0.00 0.00 0.00 3.41
3700 8152 1.402787 ACAAAGCAGGGGTGTTTCAG 58.597 50.000 0.00 0.00 0.00 3.02
3702 8154 2.979814 AAACAAAGCAGGGGTGTTTC 57.020 45.000 0.00 0.00 40.53 2.78
3703 8155 3.008485 TGAAAAACAAAGCAGGGGTGTTT 59.992 39.130 0.00 0.00 45.04 2.83
3704 8156 2.569404 TGAAAAACAAAGCAGGGGTGTT 59.431 40.909 0.00 0.00 37.07 3.32
3705 8157 2.183679 TGAAAAACAAAGCAGGGGTGT 58.816 42.857 0.00 0.00 0.00 4.16
3708 8160 2.549329 GCAATGAAAAACAAAGCAGGGG 59.451 45.455 0.00 0.00 34.22 4.79
3709 8161 3.002553 GTGCAATGAAAAACAAAGCAGGG 59.997 43.478 0.00 0.00 40.82 4.45
3711 8163 4.567558 TCTGTGCAATGAAAAACAAAGCAG 59.432 37.500 0.00 0.00 40.82 4.24
3712 8164 4.502016 TCTGTGCAATGAAAAACAAAGCA 58.498 34.783 0.00 0.00 39.02 3.91
3713 8165 5.467902 TTCTGTGCAATGAAAAACAAAGC 57.532 34.783 0.00 0.00 34.49 3.51
3715 8167 4.332268 GGCTTCTGTGCAATGAAAAACAAA 59.668 37.500 0.00 0.00 34.04 2.83
3718 8170 2.802247 GGGCTTCTGTGCAATGAAAAAC 59.198 45.455 0.00 0.00 34.04 2.43
3719 8171 2.224257 GGGGCTTCTGTGCAATGAAAAA 60.224 45.455 0.00 0.00 34.04 1.94
3722 8174 0.899717 GGGGGCTTCTGTGCAATGAA 60.900 55.000 0.00 0.00 34.04 2.57
3723 8175 1.304381 GGGGGCTTCTGTGCAATGA 60.304 57.895 0.00 0.00 34.04 2.57
3724 8176 1.304713 AGGGGGCTTCTGTGCAATG 60.305 57.895 0.00 0.00 34.04 2.82
3725 8177 1.000396 GAGGGGGCTTCTGTGCAAT 60.000 57.895 0.00 0.00 34.04 3.56
3726 8178 2.005606 TTGAGGGGGCTTCTGTGCAA 62.006 55.000 0.00 0.00 34.04 4.08
3727 8179 2.459969 TTGAGGGGGCTTCTGTGCA 61.460 57.895 0.00 0.00 34.04 4.57
3729 8181 0.178992 TTGTTGAGGGGGCTTCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
3730 8182 0.178990 GTTGTTGAGGGGGCTTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
3732 8184 0.178990 GTGTTGTTGAGGGGGCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
3733 8185 0.467290 TGTGTTGTTGAGGGGGCTTC 60.467 55.000 0.00 0.00 0.00 3.86
3734 8186 0.032615 TTGTGTTGTTGAGGGGGCTT 60.033 50.000 0.00 0.00 0.00 4.35
3735 8187 0.032615 TTTGTGTTGTTGAGGGGGCT 60.033 50.000 0.00 0.00 0.00 5.19
3736 8188 1.047801 ATTTGTGTTGTTGAGGGGGC 58.952 50.000 0.00 0.00 0.00 5.80
3738 8190 1.344114 CCCATTTGTGTTGTTGAGGGG 59.656 52.381 0.00 0.00 0.00 4.79
3739 8191 2.035832 GACCCATTTGTGTTGTTGAGGG 59.964 50.000 0.00 0.00 40.88 4.30
3740 8192 2.692557 TGACCCATTTGTGTTGTTGAGG 59.307 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.