Multiple sequence alignment - TraesCS6B01G253100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G253100 chr6B 100.000 5677 0 0 1 5677 454079933 454074257 0.000000e+00 10484.0
1 TraesCS6B01G253100 chr6D 95.978 2710 96 8 2972 5677 292033220 292030520 0.000000e+00 4388.0
2 TraesCS6B01G253100 chr6D 92.270 2044 112 12 946 2977 292035288 292033279 0.000000e+00 2857.0
3 TraesCS6B01G253100 chr6A 95.530 2707 113 5 2972 5677 431051664 431054363 0.000000e+00 4322.0
4 TraesCS6B01G253100 chr6A 92.962 2046 113 14 946 2977 431049580 431051608 0.000000e+00 2952.0
5 TraesCS6B01G253100 chr1D 75.684 621 110 28 212 803 346843535 346844143 7.250000e-69 272.0
6 TraesCS6B01G253100 chr1D 94.737 38 2 0 250 287 338922149 338922186 6.140000e-05 60.2
7 TraesCS6B01G253100 chr7D 79.470 302 47 9 233 530 16637214 16636924 3.470000e-47 200.0
8 TraesCS6B01G253100 chr7D 76.866 268 51 6 535 799 530906001 530905742 2.130000e-29 141.0
9 TraesCS6B01G253100 chr3B 80.150 267 46 2 535 800 262085258 262084998 5.800000e-45 193.0
10 TraesCS6B01G253100 chr3B 80.952 189 30 4 609 797 4628269 4628451 1.650000e-30 145.0
11 TraesCS6B01G253100 chr3A 79.775 267 43 5 535 799 233024647 233024390 3.490000e-42 183.0
12 TraesCS6B01G253100 chr3A 92.308 78 6 0 720 797 724913631 724913708 1.670000e-20 111.0
13 TraesCS6B01G253100 chr5D 77.239 268 50 8 535 799 531278894 531279153 4.580000e-31 147.0
14 TraesCS6B01G253100 chr5B 76.557 273 53 8 535 804 529211287 529211551 7.670000e-29 139.0
15 TraesCS6B01G253100 chr1A 78.212 179 32 4 621 799 387860836 387860665 2.160000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G253100 chr6B 454074257 454079933 5676 True 10484.0 10484 100.000 1 5677 1 chr6B.!!$R1 5676
1 TraesCS6B01G253100 chr6D 292030520 292035288 4768 True 3622.5 4388 94.124 946 5677 2 chr6D.!!$R1 4731
2 TraesCS6B01G253100 chr6A 431049580 431054363 4783 False 3637.0 4322 94.246 946 5677 2 chr6A.!!$F1 4731
3 TraesCS6B01G253100 chr1D 346843535 346844143 608 False 272.0 272 75.684 212 803 1 chr1D.!!$F2 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 917 0.033504 GTCAGTTGACCAGAGCCGAA 59.966 55.000 0.72 0.0 39.07 4.30 F
1490 1523 0.036388 GTTTCTGCGAGGTCATGGGA 60.036 55.000 0.00 0.0 0.00 4.37 F
1791 1826 0.857675 ACAAAGCCCCAAGGTTAGGT 59.142 50.000 0.00 0.0 34.29 3.08 F
2620 2668 1.039856 GCCACACCCTTGAACAATGT 58.960 50.000 0.00 0.0 0.00 2.71 F
3722 3834 1.275291 TGAGCCCCTCTAGTTTGAACG 59.725 52.381 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1764 0.461516 CAGCATCCTGTCTCGCATGT 60.462 55.0 0.0 0.0 34.31 3.21 R
3439 3551 1.541310 CCACTCCCAGGTTCTGCGTA 61.541 60.0 0.0 0.0 0.00 4.42 R
3528 3640 2.468532 ACCTTTTTCGCAACAACTCG 57.531 45.0 0.0 0.0 0.00 4.18 R
3849 3962 0.247460 CTGGGATCAGAACGAGCACA 59.753 55.0 0.0 0.0 42.44 4.57 R
5420 5536 0.392998 ATTCCATCACCGACAGCCAC 60.393 55.0 0.0 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.254026 GGCCTAACCCACTTGAAACC 58.746 55.000 0.00 0.00 0.00 3.27
24 25 1.203013 GGCCTAACCCACTTGAAACCT 60.203 52.381 0.00 0.00 0.00 3.50
25 26 2.594131 GCCTAACCCACTTGAAACCTT 58.406 47.619 0.00 0.00 0.00 3.50
26 27 3.499021 GGCCTAACCCACTTGAAACCTTA 60.499 47.826 0.00 0.00 0.00 2.69
27 28 4.146564 GCCTAACCCACTTGAAACCTTAA 58.853 43.478 0.00 0.00 0.00 1.85
28 29 4.585581 GCCTAACCCACTTGAAACCTTAAA 59.414 41.667 0.00 0.00 0.00 1.52
29 30 5.508489 GCCTAACCCACTTGAAACCTTAAAC 60.508 44.000 0.00 0.00 0.00 2.01
30 31 5.831525 CCTAACCCACTTGAAACCTTAAACT 59.168 40.000 0.00 0.00 0.00 2.66
31 32 6.999871 CCTAACCCACTTGAAACCTTAAACTA 59.000 38.462 0.00 0.00 0.00 2.24
32 33 6.954487 AACCCACTTGAAACCTTAAACTAG 57.046 37.500 0.00 0.00 0.00 2.57
33 34 5.382616 ACCCACTTGAAACCTTAAACTAGG 58.617 41.667 0.00 0.00 41.31 3.02
34 35 4.217767 CCCACTTGAAACCTTAAACTAGGC 59.782 45.833 0.00 0.00 38.99 3.93
35 36 4.217767 CCACTTGAAACCTTAAACTAGGCC 59.782 45.833 0.00 0.00 38.99 5.19
36 37 4.217767 CACTTGAAACCTTAAACTAGGCCC 59.782 45.833 0.00 0.00 38.99 5.80
37 38 4.141111 ACTTGAAACCTTAAACTAGGCCCA 60.141 41.667 0.00 0.00 38.99 5.36
38 39 4.668138 TGAAACCTTAAACTAGGCCCAT 57.332 40.909 0.00 0.00 38.99 4.00
39 40 4.340617 TGAAACCTTAAACTAGGCCCATG 58.659 43.478 0.00 0.00 38.99 3.66
40 41 4.043561 TGAAACCTTAAACTAGGCCCATGA 59.956 41.667 0.00 0.00 38.99 3.07
41 42 4.668138 AACCTTAAACTAGGCCCATGAA 57.332 40.909 0.00 0.00 38.99 2.57
42 43 4.668138 ACCTTAAACTAGGCCCATGAAA 57.332 40.909 0.00 0.00 38.99 2.69
43 44 5.005628 ACCTTAAACTAGGCCCATGAAAA 57.994 39.130 0.00 0.00 38.99 2.29
44 45 5.399113 ACCTTAAACTAGGCCCATGAAAAA 58.601 37.500 0.00 0.00 38.99 1.94
60 61 1.952193 AAAAATGCAAGTGGTGGTGC 58.048 45.000 0.00 0.00 41.29 5.01
61 62 1.122227 AAAATGCAAGTGGTGGTGCT 58.878 45.000 0.00 0.00 41.48 4.40
62 63 1.993956 AAATGCAAGTGGTGGTGCTA 58.006 45.000 0.00 0.00 41.48 3.49
63 64 1.993956 AATGCAAGTGGTGGTGCTAA 58.006 45.000 0.00 0.00 41.48 3.09
64 65 1.993956 ATGCAAGTGGTGGTGCTAAA 58.006 45.000 0.00 0.00 41.48 1.85
65 66 1.769026 TGCAAGTGGTGGTGCTAAAA 58.231 45.000 0.00 0.00 41.48 1.52
66 67 1.680735 TGCAAGTGGTGGTGCTAAAAG 59.319 47.619 0.00 0.00 41.48 2.27
67 68 1.681264 GCAAGTGGTGGTGCTAAAAGT 59.319 47.619 0.00 0.00 37.78 2.66
68 69 2.100749 GCAAGTGGTGGTGCTAAAAGTT 59.899 45.455 0.00 0.00 37.78 2.66
69 70 3.430236 GCAAGTGGTGGTGCTAAAAGTTT 60.430 43.478 0.00 0.00 37.78 2.66
70 71 4.111916 CAAGTGGTGGTGCTAAAAGTTTG 58.888 43.478 0.00 0.00 0.00 2.93
71 72 3.361786 AGTGGTGGTGCTAAAAGTTTGT 58.638 40.909 0.00 0.00 0.00 2.83
72 73 3.380320 AGTGGTGGTGCTAAAAGTTTGTC 59.620 43.478 0.00 0.00 0.00 3.18
73 74 2.691011 TGGTGGTGCTAAAAGTTTGTCC 59.309 45.455 0.00 0.00 0.00 4.02
74 75 2.035449 GGTGGTGCTAAAAGTTTGTCCC 59.965 50.000 0.00 0.00 0.00 4.46
75 76 2.691011 GTGGTGCTAAAAGTTTGTCCCA 59.309 45.455 0.00 0.00 0.00 4.37
76 77 3.320826 GTGGTGCTAAAAGTTTGTCCCAT 59.679 43.478 0.00 0.00 0.00 4.00
77 78 4.521256 GTGGTGCTAAAAGTTTGTCCCATA 59.479 41.667 0.00 0.00 0.00 2.74
78 79 4.521256 TGGTGCTAAAAGTTTGTCCCATAC 59.479 41.667 0.00 0.00 0.00 2.39
79 80 4.082408 GGTGCTAAAAGTTTGTCCCATACC 60.082 45.833 0.00 0.00 0.00 2.73
80 81 3.754323 TGCTAAAAGTTTGTCCCATACCG 59.246 43.478 0.00 0.00 0.00 4.02
81 82 3.427098 GCTAAAAGTTTGTCCCATACCGC 60.427 47.826 0.00 0.00 0.00 5.68
82 83 2.579410 AAAGTTTGTCCCATACCGCT 57.421 45.000 0.00 0.00 0.00 5.52
83 84 3.706600 AAAGTTTGTCCCATACCGCTA 57.293 42.857 0.00 0.00 0.00 4.26
84 85 2.981859 AGTTTGTCCCATACCGCTAG 57.018 50.000 0.00 0.00 0.00 3.42
85 86 2.185387 AGTTTGTCCCATACCGCTAGT 58.815 47.619 0.00 0.00 0.00 2.57
86 87 2.093658 AGTTTGTCCCATACCGCTAGTG 60.094 50.000 0.00 0.00 0.00 2.74
87 88 1.855295 TTGTCCCATACCGCTAGTGA 58.145 50.000 4.44 0.00 0.00 3.41
88 89 1.855295 TGTCCCATACCGCTAGTGAA 58.145 50.000 4.44 0.00 0.00 3.18
89 90 1.754803 TGTCCCATACCGCTAGTGAAG 59.245 52.381 4.44 0.00 0.00 3.02
90 91 2.029623 GTCCCATACCGCTAGTGAAGA 58.970 52.381 4.44 0.00 0.00 2.87
91 92 2.429610 GTCCCATACCGCTAGTGAAGAA 59.570 50.000 4.44 0.00 0.00 2.52
92 93 3.101437 TCCCATACCGCTAGTGAAGAAA 58.899 45.455 4.44 0.00 0.00 2.52
93 94 3.132289 TCCCATACCGCTAGTGAAGAAAG 59.868 47.826 4.44 0.00 0.00 2.62
94 95 3.118738 CCCATACCGCTAGTGAAGAAAGT 60.119 47.826 4.44 0.00 0.00 2.66
95 96 4.098960 CCCATACCGCTAGTGAAGAAAGTA 59.901 45.833 4.44 0.00 0.00 2.24
96 97 5.221461 CCCATACCGCTAGTGAAGAAAGTAT 60.221 44.000 4.44 0.06 0.00 2.12
97 98 6.281405 CCATACCGCTAGTGAAGAAAGTATT 58.719 40.000 4.44 0.00 0.00 1.89
98 99 7.431249 CCATACCGCTAGTGAAGAAAGTATTA 58.569 38.462 4.44 0.00 0.00 0.98
99 100 7.595502 CCATACCGCTAGTGAAGAAAGTATTAG 59.404 40.741 4.44 0.00 0.00 1.73
100 101 6.770746 ACCGCTAGTGAAGAAAGTATTAGA 57.229 37.500 4.44 0.00 0.00 2.10
101 102 6.562518 ACCGCTAGTGAAGAAAGTATTAGAC 58.437 40.000 4.44 0.00 0.00 2.59
102 103 5.978322 CCGCTAGTGAAGAAAGTATTAGACC 59.022 44.000 4.44 0.00 0.00 3.85
103 104 6.405508 CCGCTAGTGAAGAAAGTATTAGACCA 60.406 42.308 4.44 0.00 0.00 4.02
104 105 6.472808 CGCTAGTGAAGAAAGTATTAGACCAC 59.527 42.308 0.00 0.00 0.00 4.16
105 106 7.548967 GCTAGTGAAGAAAGTATTAGACCACT 58.451 38.462 0.00 0.00 36.48 4.00
106 107 8.035984 GCTAGTGAAGAAAGTATTAGACCACTT 58.964 37.037 0.00 0.00 36.56 3.16
107 108 9.930693 CTAGTGAAGAAAGTATTAGACCACTTT 57.069 33.333 0.00 0.00 45.29 2.66
126 127 9.696572 ACCACTTTATATAGTGAGTTCTCTACA 57.303 33.333 20.90 0.00 46.72 2.74
127 128 9.953697 CCACTTTATATAGTGAGTTCTCTACAC 57.046 37.037 20.90 0.00 46.72 2.90
128 129 9.953697 CACTTTATATAGTGAGTTCTCTACACC 57.046 37.037 15.88 0.00 46.72 4.16
129 130 9.696572 ACTTTATATAGTGAGTTCTCTACACCA 57.303 33.333 0.00 0.00 35.47 4.17
137 138 8.596781 AGTGAGTTCTCTACACCATATTTAGT 57.403 34.615 0.00 0.00 35.47 2.24
138 139 8.470805 AGTGAGTTCTCTACACCATATTTAGTG 58.529 37.037 0.00 0.00 39.93 2.74
139 140 8.467598 GTGAGTTCTCTACACCATATTTAGTGA 58.532 37.037 4.68 0.00 37.43 3.41
140 141 9.201989 TGAGTTCTCTACACCATATTTAGTGAT 57.798 33.333 4.68 0.00 37.43 3.06
141 142 9.469807 GAGTTCTCTACACCATATTTAGTGATG 57.530 37.037 4.68 0.00 37.43 3.07
142 143 8.982723 AGTTCTCTACACCATATTTAGTGATGT 58.017 33.333 4.68 0.00 37.43 3.06
143 144 9.035607 GTTCTCTACACCATATTTAGTGATGTG 57.964 37.037 4.68 0.00 37.43 3.21
144 145 8.306313 TCTCTACACCATATTTAGTGATGTGT 57.694 34.615 0.00 0.00 37.43 3.72
145 146 8.758829 TCTCTACACCATATTTAGTGATGTGTT 58.241 33.333 0.00 0.00 37.43 3.32
149 150 8.506168 ACACCATATTTAGTGATGTGTTAAGG 57.494 34.615 4.68 0.00 37.43 2.69
150 151 8.325787 ACACCATATTTAGTGATGTGTTAAGGA 58.674 33.333 4.68 0.00 37.43 3.36
151 152 9.173021 CACCATATTTAGTGATGTGTTAAGGAA 57.827 33.333 0.00 0.00 36.01 3.36
152 153 9.747898 ACCATATTTAGTGATGTGTTAAGGAAA 57.252 29.630 0.00 0.00 0.00 3.13
161 162 9.793259 AGTGATGTGTTAAGGAAAGAAATAGAA 57.207 29.630 0.00 0.00 0.00 2.10
165 166 9.793259 ATGTGTTAAGGAAAGAAATAGAAGACA 57.207 29.630 0.00 0.00 0.00 3.41
166 167 9.621629 TGTGTTAAGGAAAGAAATAGAAGACAA 57.378 29.630 0.00 0.00 0.00 3.18
167 168 9.880064 GTGTTAAGGAAAGAAATAGAAGACAAC 57.120 33.333 0.00 0.00 0.00 3.32
168 169 9.621629 TGTTAAGGAAAGAAATAGAAGACAACA 57.378 29.630 0.00 0.00 0.00 3.33
169 170 9.880064 GTTAAGGAAAGAAATAGAAGACAACAC 57.120 33.333 0.00 0.00 0.00 3.32
170 171 6.787085 AGGAAAGAAATAGAAGACAACACG 57.213 37.500 0.00 0.00 0.00 4.49
171 172 5.701290 AGGAAAGAAATAGAAGACAACACGG 59.299 40.000 0.00 0.00 0.00 4.94
172 173 5.106673 GGAAAGAAATAGAAGACAACACGGG 60.107 44.000 0.00 0.00 0.00 5.28
173 174 3.335579 AGAAATAGAAGACAACACGGGC 58.664 45.455 0.00 0.00 0.00 6.13
174 175 2.851263 AATAGAAGACAACACGGGCA 57.149 45.000 0.00 0.00 0.00 5.36
175 176 2.094762 ATAGAAGACAACACGGGCAC 57.905 50.000 0.00 0.00 0.00 5.01
177 178 1.593209 GAAGACAACACGGGCACGA 60.593 57.895 19.19 0.00 44.60 4.35
178 179 1.557443 GAAGACAACACGGGCACGAG 61.557 60.000 19.19 10.92 44.60 4.18
179 180 3.712881 GACAACACGGGCACGAGC 61.713 66.667 19.19 0.00 44.60 5.03
180 181 4.539083 ACAACACGGGCACGAGCA 62.539 61.111 19.19 0.00 44.60 4.26
181 182 4.012895 CAACACGGGCACGAGCAC 62.013 66.667 19.19 0.94 44.60 4.40
195 196 2.743928 GCACGAGGCTCAGGGTTG 60.744 66.667 15.95 4.20 40.25 3.77
196 197 3.059982 CACGAGGCTCAGGGTTGA 58.940 61.111 15.95 0.00 0.00 3.18
203 204 2.031012 CTCAGGGTTGAGCGTGCA 59.969 61.111 0.00 0.00 43.98 4.57
204 205 2.280797 TCAGGGTTGAGCGTGCAC 60.281 61.111 6.82 6.82 0.00 4.57
205 206 3.716006 CAGGGTTGAGCGTGCACG 61.716 66.667 34.01 34.01 43.27 5.34
206 207 4.235762 AGGGTTGAGCGTGCACGT 62.236 61.111 36.80 24.72 42.22 4.49
207 208 4.012895 GGGTTGAGCGTGCACGTG 62.013 66.667 36.80 12.28 42.22 4.49
208 209 2.964925 GGTTGAGCGTGCACGTGA 60.965 61.111 36.80 20.11 42.22 4.35
209 210 2.546321 GTTGAGCGTGCACGTGAG 59.454 61.111 36.80 13.00 42.22 3.51
210 211 1.949133 GTTGAGCGTGCACGTGAGA 60.949 57.895 36.80 19.91 42.22 3.27
215 216 2.021584 GCGTGCACGTGAGACATGA 61.022 57.895 36.80 0.00 42.22 3.07
216 217 1.556591 GCGTGCACGTGAGACATGAA 61.557 55.000 36.80 0.00 42.22 2.57
227 228 3.123621 GTGAGACATGAACGTGAATGGTC 59.876 47.826 13.53 10.35 0.00 4.02
237 238 1.468520 CGTGAATGGTCTGCCGAAATT 59.531 47.619 0.00 0.00 37.67 1.82
252 253 4.506838 CGAAATTCGGTCTGATGACTTC 57.493 45.455 7.61 0.00 42.54 3.01
256 257 1.186200 TCGGTCTGATGACTTCCAGG 58.814 55.000 0.00 0.00 42.54 4.45
261 262 2.514824 GATGACTTCCAGGGGCGC 60.515 66.667 0.00 0.00 0.00 6.53
267 268 1.903404 CTTCCAGGGGCGCAACTTT 60.903 57.895 10.83 0.00 0.00 2.66
268 269 1.866853 CTTCCAGGGGCGCAACTTTC 61.867 60.000 10.83 0.00 0.00 2.62
274 275 1.221466 GGGGCGCAACTTTCTTTTGC 61.221 55.000 10.83 0.00 44.94 3.68
296 298 5.694006 TGCCGTTTTATTTTTGATGTCTTGG 59.306 36.000 0.00 0.00 0.00 3.61
297 299 5.389411 GCCGTTTTATTTTTGATGTCTTGGC 60.389 40.000 0.00 0.00 0.00 4.52
298 300 5.694006 CCGTTTTATTTTTGATGTCTTGGCA 59.306 36.000 0.00 0.00 0.00 4.92
366 370 2.668457 AGTCGTTTGAGATTGTGATCGC 59.332 45.455 0.00 0.00 37.37 4.58
371 375 2.584492 TGAGATTGTGATCGCGACAT 57.416 45.000 12.93 0.00 37.37 3.06
377 381 2.134201 TGTGATCGCGACATGATACC 57.866 50.000 12.93 0.00 0.00 2.73
378 382 1.053048 GTGATCGCGACATGATACCG 58.947 55.000 12.93 0.00 0.00 4.02
384 388 0.941463 GCGACATGATACCGCCTCTG 60.941 60.000 0.00 0.00 42.77 3.35
394 398 2.400467 ACCGCCTCTGGTCCTATTAT 57.600 50.000 0.00 0.00 37.91 1.28
399 403 6.203072 ACCGCCTCTGGTCCTATTATATATT 58.797 40.000 0.00 0.00 37.91 1.28
400 404 6.098409 ACCGCCTCTGGTCCTATTATATATTG 59.902 42.308 0.00 0.00 37.91 1.90
401 405 6.463049 CCGCCTCTGGTCCTATTATATATTGG 60.463 46.154 0.00 0.00 0.00 3.16
402 406 6.292150 GCCTCTGGTCCTATTATATATTGGC 58.708 44.000 0.00 0.00 0.00 4.52
403 407 6.689177 GCCTCTGGTCCTATTATATATTGGCC 60.689 46.154 0.00 0.00 0.00 5.36
405 409 7.195374 TCTGGTCCTATTATATATTGGCCAC 57.805 40.000 3.88 0.00 0.00 5.01
407 411 5.793237 TGGTCCTATTATATATTGGCCACCA 59.207 40.000 3.88 0.31 0.00 4.17
420 428 0.671251 GCCACCAATCACGACCAAAA 59.329 50.000 0.00 0.00 0.00 2.44
427 435 3.980775 CCAATCACGACCAAAAACACATC 59.019 43.478 0.00 0.00 0.00 3.06
428 436 3.536158 ATCACGACCAAAAACACATCG 57.464 42.857 0.00 0.00 38.71 3.84
436 444 4.810790 ACCAAAAACACATCGAAAACACA 58.189 34.783 0.00 0.00 0.00 3.72
440 448 6.915300 CCAAAAACACATCGAAAACACATAGA 59.085 34.615 0.00 0.00 0.00 1.98
447 455 7.132213 CACATCGAAAACACATAGAGTTTTGT 58.868 34.615 8.56 0.00 46.01 2.83
448 456 7.321271 CACATCGAAAACACATAGAGTTTTGTC 59.679 37.037 8.56 0.00 46.01 3.18
450 458 7.173863 TCGAAAACACATAGAGTTTTGTCTC 57.826 36.000 8.56 0.00 46.01 3.36
451 459 6.065153 CGAAAACACATAGAGTTTTGTCTCG 58.935 40.000 8.56 3.23 46.01 4.04
455 463 5.844004 ACACATAGAGTTTTGTCTCGTCTT 58.156 37.500 0.00 0.00 39.21 3.01
459 467 3.531538 AGAGTTTTGTCTCGTCTTGCAA 58.468 40.909 0.00 0.00 39.21 4.08
460 468 3.309954 AGAGTTTTGTCTCGTCTTGCAAC 59.690 43.478 0.00 0.00 39.21 4.17
462 470 3.689649 AGTTTTGTCTCGTCTTGCAACTT 59.310 39.130 0.00 0.00 0.00 2.66
463 471 3.673746 TTTGTCTCGTCTTGCAACTTG 57.326 42.857 0.00 0.00 0.00 3.16
464 472 0.937304 TGTCTCGTCTTGCAACTTGC 59.063 50.000 6.82 6.82 45.29 4.01
465 473 1.221414 GTCTCGTCTTGCAACTTGCT 58.779 50.000 14.78 0.00 45.31 3.91
467 475 1.202521 TCTCGTCTTGCAACTTGCTCA 60.203 47.619 14.78 1.20 45.31 4.26
485 493 0.731417 CACCACCGTAGTCTACTCCG 59.269 60.000 8.37 0.00 0.00 4.63
490 498 1.156645 CCGTAGTCTACTCCGTCCCG 61.157 65.000 8.37 0.00 0.00 5.14
493 501 2.570135 GTAGTCTACTCCGTCCCGAAT 58.430 52.381 2.53 0.00 0.00 3.34
497 505 2.679132 CTACTCCGTCCCGAATGCCG 62.679 65.000 0.00 0.00 38.18 5.69
498 506 3.833645 CTCCGTCCCGAATGCCGA 61.834 66.667 0.00 0.00 41.76 5.54
521 529 4.194720 ATCGACGTGCGGGAGAGC 62.195 66.667 0.00 0.00 41.33 4.09
534 542 3.427309 GAGAGCAAGTCTCCGGAAC 57.573 57.895 5.23 7.15 45.57 3.62
537 545 1.819903 AGAGCAAGTCTCCGGAACTAC 59.180 52.381 16.39 10.48 42.90 2.73
538 546 1.819903 GAGCAAGTCTCCGGAACTACT 59.180 52.381 16.39 15.97 35.77 2.57
539 547 1.819903 AGCAAGTCTCCGGAACTACTC 59.180 52.381 16.39 10.28 0.00 2.59
540 548 1.544691 GCAAGTCTCCGGAACTACTCA 59.455 52.381 16.39 0.00 0.00 3.41
541 549 2.166664 GCAAGTCTCCGGAACTACTCAT 59.833 50.000 16.39 1.06 0.00 2.90
542 550 3.380637 GCAAGTCTCCGGAACTACTCATA 59.619 47.826 16.39 0.00 0.00 2.15
543 551 4.498345 GCAAGTCTCCGGAACTACTCATAG 60.498 50.000 16.39 8.31 34.25 2.23
545 553 4.453751 AGTCTCCGGAACTACTCATAGTC 58.546 47.826 5.23 0.00 41.00 2.59
546 554 3.248125 GTCTCCGGAACTACTCATAGTCG 59.752 52.174 5.23 0.00 41.00 4.18
547 555 3.118482 TCTCCGGAACTACTCATAGTCGT 60.118 47.826 5.23 0.00 41.00 4.34
548 556 3.201290 TCCGGAACTACTCATAGTCGTC 58.799 50.000 0.00 0.00 41.00 4.20
550 558 4.100035 TCCGGAACTACTCATAGTCGTCTA 59.900 45.833 0.00 0.00 41.00 2.59
552 560 4.807834 CGGAACTACTCATAGTCGTCTACA 59.192 45.833 0.00 0.00 41.00 2.74
572 599 2.717580 ACGTCGTTAGCAACAGATCA 57.282 45.000 0.00 0.00 0.00 2.92
575 602 3.179048 CGTCGTTAGCAACAGATCATCA 58.821 45.455 0.00 0.00 0.00 3.07
576 603 3.000674 CGTCGTTAGCAACAGATCATCAC 60.001 47.826 0.00 0.00 0.00 3.06
580 607 4.436050 CGTTAGCAACAGATCATCACCAAC 60.436 45.833 0.00 0.00 0.00 3.77
584 611 3.441222 GCAACAGATCATCACCAACATCA 59.559 43.478 0.00 0.00 0.00 3.07
592 619 7.004691 AGATCATCACCAACATCATCATCAAT 58.995 34.615 0.00 0.00 0.00 2.57
595 622 7.933396 TCATCACCAACATCATCATCAATAAC 58.067 34.615 0.00 0.00 0.00 1.89
596 623 7.556996 TCATCACCAACATCATCATCAATAACA 59.443 33.333 0.00 0.00 0.00 2.41
598 625 7.933396 TCACCAACATCATCATCAATAACATC 58.067 34.615 0.00 0.00 0.00 3.06
602 629 7.095102 CCAACATCATCATCAATAACATCGCTA 60.095 37.037 0.00 0.00 0.00 4.26
603 630 8.448615 CAACATCATCATCAATAACATCGCTAT 58.551 33.333 0.00 0.00 0.00 2.97
604 631 7.971455 ACATCATCATCAATAACATCGCTATG 58.029 34.615 0.00 0.00 39.17 2.23
605 632 6.413018 TCATCATCAATAACATCGCTATGC 57.587 37.500 0.00 0.00 36.50 3.14
606 633 5.933463 TCATCATCAATAACATCGCTATGCA 59.067 36.000 0.00 0.00 36.50 3.96
608 635 5.989249 TCATCAATAACATCGCTATGCAAC 58.011 37.500 0.00 0.00 36.50 4.17
609 636 5.526846 TCATCAATAACATCGCTATGCAACA 59.473 36.000 0.00 0.00 36.50 3.33
616 644 3.062099 ACATCGCTATGCAACAACTAACG 59.938 43.478 0.00 0.00 36.50 3.18
617 645 2.949142 TCGCTATGCAACAACTAACGA 58.051 42.857 0.00 0.00 0.00 3.85
624 652 4.782252 TGCAACAACTAACGAACAGTAC 57.218 40.909 0.00 0.00 0.00 2.73
625 653 3.243410 TGCAACAACTAACGAACAGTACG 59.757 43.478 0.00 0.00 0.00 3.67
628 656 4.558538 ACAACTAACGAACAGTACGTCT 57.441 40.909 0.00 0.00 43.16 4.18
653 681 9.767684 CTATCGTGATCTGTTTATGTCTCTATC 57.232 37.037 0.00 0.00 0.00 2.08
655 683 7.643579 TCGTGATCTGTTTATGTCTCTATCTG 58.356 38.462 0.00 0.00 0.00 2.90
656 684 7.283354 TCGTGATCTGTTTATGTCTCTATCTGT 59.717 37.037 0.00 0.00 0.00 3.41
657 685 8.560374 CGTGATCTGTTTATGTCTCTATCTGTA 58.440 37.037 0.00 0.00 0.00 2.74
672 700 9.682465 TCTCTATCTGTAGTAGTTGTTACATGT 57.318 33.333 2.69 2.69 34.56 3.21
674 702 8.188799 TCTATCTGTAGTAGTTGTTACATGTGC 58.811 37.037 9.11 1.72 34.56 4.57
675 703 6.091718 TCTGTAGTAGTTGTTACATGTGCA 57.908 37.500 9.11 4.65 34.56 4.57
676 704 6.517605 TCTGTAGTAGTTGTTACATGTGCAA 58.482 36.000 9.11 10.84 34.56 4.08
679 707 6.708502 TGTAGTAGTTGTTACATGTGCAATGT 59.291 34.615 9.11 15.56 34.56 2.71
682 710 5.261209 AGTTGTTACATGTGCAATGTTGT 57.739 34.783 9.11 8.12 33.76 3.32
684 712 6.800543 AGTTGTTACATGTGCAATGTTGTTA 58.199 32.000 9.11 0.00 33.76 2.41
697 725 8.719560 TGCAATGTTGTTATGCATATTTTCAT 57.280 26.923 7.36 7.94 44.52 2.57
729 758 8.784994 TCTAGTATGCTAGTAGTAGATTGTTGC 58.215 37.037 16.31 0.00 43.86 4.17
736 765 8.084684 TGCTAGTAGTAGATTGTTGCATGATAG 58.915 37.037 8.87 0.00 0.00 2.08
787 816 8.937634 ACTGAAATTAATCATGAATTTGCCTC 57.062 30.769 8.27 0.00 36.78 4.70
799 828 7.760794 TCATGAATTTGCCTCATATTTCAACAC 59.239 33.333 0.00 0.00 32.20 3.32
803 832 2.754552 TGCCTCATATTTCAACACCTGC 59.245 45.455 0.00 0.00 0.00 4.85
804 833 2.754552 GCCTCATATTTCAACACCTGCA 59.245 45.455 0.00 0.00 0.00 4.41
805 834 3.193267 GCCTCATATTTCAACACCTGCAA 59.807 43.478 0.00 0.00 0.00 4.08
806 835 4.142093 GCCTCATATTTCAACACCTGCAAT 60.142 41.667 0.00 0.00 0.00 3.56
807 836 5.067674 GCCTCATATTTCAACACCTGCAATA 59.932 40.000 0.00 0.00 29.38 1.90
808 837 6.405731 GCCTCATATTTCAACACCTGCAATAA 60.406 38.462 0.00 0.00 28.76 1.40
809 838 7.685155 GCCTCATATTTCAACACCTGCAATAAT 60.685 37.037 0.00 0.00 28.76 1.28
810 839 7.864379 CCTCATATTTCAACACCTGCAATAATC 59.136 37.037 0.00 0.00 28.76 1.75
811 840 8.523915 TCATATTTCAACACCTGCAATAATCT 57.476 30.769 0.00 0.00 28.76 2.40
812 841 9.625747 TCATATTTCAACACCTGCAATAATCTA 57.374 29.630 0.00 0.00 28.76 1.98
813 842 9.669353 CATATTTCAACACCTGCAATAATCTAC 57.331 33.333 0.00 0.00 28.76 2.59
814 843 7.944729 ATTTCAACACCTGCAATAATCTACT 57.055 32.000 0.00 0.00 0.00 2.57
815 844 6.985188 TTCAACACCTGCAATAATCTACTC 57.015 37.500 0.00 0.00 0.00 2.59
816 845 5.428253 TCAACACCTGCAATAATCTACTCC 58.572 41.667 0.00 0.00 0.00 3.85
817 846 5.045942 TCAACACCTGCAATAATCTACTCCA 60.046 40.000 0.00 0.00 0.00 3.86
818 847 5.435686 ACACCTGCAATAATCTACTCCAA 57.564 39.130 0.00 0.00 0.00 3.53
819 848 5.186198 ACACCTGCAATAATCTACTCCAAC 58.814 41.667 0.00 0.00 0.00 3.77
820 849 5.045578 ACACCTGCAATAATCTACTCCAACT 60.046 40.000 0.00 0.00 0.00 3.16
821 850 5.882557 CACCTGCAATAATCTACTCCAACTT 59.117 40.000 0.00 0.00 0.00 2.66
822 851 7.047891 CACCTGCAATAATCTACTCCAACTTA 58.952 38.462 0.00 0.00 0.00 2.24
823 852 7.011482 CACCTGCAATAATCTACTCCAACTTAC 59.989 40.741 0.00 0.00 0.00 2.34
824 853 6.483640 CCTGCAATAATCTACTCCAACTTACC 59.516 42.308 0.00 0.00 0.00 2.85
825 854 6.953101 TGCAATAATCTACTCCAACTTACCA 58.047 36.000 0.00 0.00 0.00 3.25
826 855 7.573710 TGCAATAATCTACTCCAACTTACCAT 58.426 34.615 0.00 0.00 0.00 3.55
827 856 8.710239 TGCAATAATCTACTCCAACTTACCATA 58.290 33.333 0.00 0.00 0.00 2.74
828 857 8.989980 GCAATAATCTACTCCAACTTACCATAC 58.010 37.037 0.00 0.00 0.00 2.39
829 858 9.193133 CAATAATCTACTCCAACTTACCATACG 57.807 37.037 0.00 0.00 0.00 3.06
830 859 5.786264 ATCTACTCCAACTTACCATACGG 57.214 43.478 0.00 0.00 38.77 4.02
831 860 3.956199 TCTACTCCAACTTACCATACGGG 59.044 47.826 0.00 0.00 44.81 5.28
832 861 2.823959 ACTCCAACTTACCATACGGGA 58.176 47.619 0.00 0.00 41.15 5.14
833 862 3.175594 ACTCCAACTTACCATACGGGAA 58.824 45.455 0.00 0.00 41.15 3.97
834 863 3.055602 ACTCCAACTTACCATACGGGAAC 60.056 47.826 0.00 0.00 41.15 3.62
835 864 3.175594 TCCAACTTACCATACGGGAACT 58.824 45.455 0.00 0.00 41.15 3.01
836 865 3.583966 TCCAACTTACCATACGGGAACTT 59.416 43.478 0.00 0.00 41.15 2.66
837 866 3.687698 CCAACTTACCATACGGGAACTTG 59.312 47.826 0.00 0.00 41.15 3.16
838 867 4.563993 CCAACTTACCATACGGGAACTTGA 60.564 45.833 0.00 0.00 41.15 3.02
839 868 4.895668 ACTTACCATACGGGAACTTGAA 57.104 40.909 0.00 0.00 41.15 2.69
840 869 5.231702 ACTTACCATACGGGAACTTGAAA 57.768 39.130 0.00 0.00 41.15 2.69
841 870 5.623169 ACTTACCATACGGGAACTTGAAAA 58.377 37.500 0.00 0.00 41.15 2.29
842 871 6.063404 ACTTACCATACGGGAACTTGAAAAA 58.937 36.000 0.00 0.00 41.15 1.94
865 894 5.941555 AAAACTTAACATGTGGGTTTCCA 57.058 34.783 18.00 0.00 41.58 3.53
875 904 2.818751 TGGGTTTCCACTTGTCAGTT 57.181 45.000 0.00 0.00 38.32 3.16
876 905 2.374184 TGGGTTTCCACTTGTCAGTTG 58.626 47.619 0.00 0.00 38.32 3.16
877 906 2.025793 TGGGTTTCCACTTGTCAGTTGA 60.026 45.455 0.00 0.00 38.32 3.18
878 907 2.357952 GGGTTTCCACTTGTCAGTTGAC 59.642 50.000 5.33 5.33 44.97 3.18
879 908 2.357952 GGTTTCCACTTGTCAGTTGACC 59.642 50.000 9.60 0.00 44.15 4.02
880 909 3.013921 GTTTCCACTTGTCAGTTGACCA 58.986 45.455 9.60 0.00 44.15 4.02
881 910 2.620251 TCCACTTGTCAGTTGACCAG 57.380 50.000 9.60 10.22 44.15 4.00
882 911 2.115427 TCCACTTGTCAGTTGACCAGA 58.885 47.619 17.27 2.69 44.15 3.86
883 912 2.103094 TCCACTTGTCAGTTGACCAGAG 59.897 50.000 17.27 10.77 44.15 3.35
884 913 1.869767 CACTTGTCAGTTGACCAGAGC 59.130 52.381 17.27 0.00 44.15 4.09
885 914 1.202698 ACTTGTCAGTTGACCAGAGCC 60.203 52.381 17.27 0.00 44.15 4.70
886 915 0.249868 TTGTCAGTTGACCAGAGCCG 60.250 55.000 9.60 0.00 44.15 5.52
887 916 1.112916 TGTCAGTTGACCAGAGCCGA 61.113 55.000 9.60 0.00 44.15 5.54
888 917 0.033504 GTCAGTTGACCAGAGCCGAA 59.966 55.000 0.72 0.00 39.07 4.30
889 918 0.318441 TCAGTTGACCAGAGCCGAAG 59.682 55.000 0.00 0.00 0.00 3.79
901 930 2.561373 CCGAAGGCGCAAACTTCC 59.439 61.111 10.83 0.00 46.14 3.46
902 931 2.561373 CGAAGGCGCAAACTTCCC 59.439 61.111 10.83 0.00 40.90 3.97
903 932 2.962569 GAAGGCGCAAACTTCCCC 59.037 61.111 10.83 0.00 38.67 4.81
904 933 2.978018 GAAGGCGCAAACTTCCCCG 61.978 63.158 10.83 0.00 38.67 5.73
907 936 3.670377 GCGCAAACTTCCCCGCTT 61.670 61.111 0.30 0.00 42.83 4.68
908 937 2.561373 CGCAAACTTCCCCGCTTC 59.439 61.111 0.00 0.00 0.00 3.86
909 938 2.962569 GCAAACTTCCCCGCTTCC 59.037 61.111 0.00 0.00 0.00 3.46
910 939 1.603739 GCAAACTTCCCCGCTTCCT 60.604 57.895 0.00 0.00 0.00 3.36
911 940 1.587043 GCAAACTTCCCCGCTTCCTC 61.587 60.000 0.00 0.00 0.00 3.71
912 941 0.960861 CAAACTTCCCCGCTTCCTCC 60.961 60.000 0.00 0.00 0.00 4.30
913 942 2.138453 AAACTTCCCCGCTTCCTCCC 62.138 60.000 0.00 0.00 0.00 4.30
914 943 3.798511 CTTCCCCGCTTCCTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
915 944 4.348495 TTCCCCGCTTCCTCCCCT 62.348 66.667 0.00 0.00 0.00 4.79
916 945 4.798682 TCCCCGCTTCCTCCCCTC 62.799 72.222 0.00 0.00 0.00 4.30
918 947 3.009115 CCCGCTTCCTCCCCTCAA 61.009 66.667 0.00 0.00 0.00 3.02
919 948 2.602676 CCCGCTTCCTCCCCTCAAA 61.603 63.158 0.00 0.00 0.00 2.69
920 949 1.378762 CCGCTTCCTCCCCTCAAAA 59.621 57.895 0.00 0.00 0.00 2.44
921 950 0.251165 CCGCTTCCTCCCCTCAAAAA 60.251 55.000 0.00 0.00 0.00 1.94
1132 1161 3.151022 CTCCAGGCTCGTCTCCCC 61.151 72.222 0.00 0.00 0.00 4.81
1162 1191 5.521010 CCACCGCTTTTACGATTCTTGTATA 59.479 40.000 0.00 0.00 34.06 1.47
1248 1280 2.342648 GGTTCAGGAAGACGCCGT 59.657 61.111 0.00 0.00 0.00 5.68
1252 1284 1.541310 TTCAGGAAGACGCCGTGGAT 61.541 55.000 0.00 0.00 0.00 3.41
1255 1287 0.673644 AGGAAGACGCCGTGGATTTG 60.674 55.000 0.00 0.00 0.00 2.32
1261 1293 2.167693 AGACGCCGTGGATTTGAATCTA 59.832 45.455 0.00 0.00 35.73 1.98
1274 1306 6.258068 GGATTTGAATCTACGGTTCGATTCTT 59.742 38.462 22.27 13.43 43.59 2.52
1290 1322 4.818546 CGATTCTTATTGGACTGGAATGCT 59.181 41.667 0.00 0.00 0.00 3.79
1292 1324 3.889815 TCTTATTGGACTGGAATGCTGG 58.110 45.455 0.00 0.00 0.00 4.85
1302 1334 1.648467 GGAATGCTGGTCCTGCGTTC 61.648 60.000 32.49 32.49 46.32 3.95
1332 1365 7.975616 CCAAAAGAAAAACAGAAGAGTTCATGA 59.024 33.333 0.00 0.00 0.00 3.07
1360 1393 2.423517 GGGGAGAGTTGGGATCATTTCC 60.424 54.545 0.00 0.00 44.62 3.13
1379 1412 7.290248 TCATTTCCCTCTCGATTTAGTAGGATT 59.710 37.037 0.00 0.00 0.00 3.01
1387 1420 5.345702 TCGATTTAGTAGGATTTGGTGTCG 58.654 41.667 0.00 0.00 0.00 4.35
1396 1429 4.466827 AGGATTTGGTGTCGGTTTAAAGT 58.533 39.130 0.00 0.00 0.00 2.66
1401 1434 2.363680 TGGTGTCGGTTTAAAGTCCGTA 59.636 45.455 14.72 5.42 45.88 4.02
1423 1456 1.134877 GCTTCCGTTCCCTACCTACAC 60.135 57.143 0.00 0.00 0.00 2.90
1431 1464 2.104967 TCCCTACCTACACGTTGATGG 58.895 52.381 0.00 0.00 0.00 3.51
1437 1470 1.730064 CCTACACGTTGATGGTTTCCG 59.270 52.381 0.00 0.00 0.00 4.30
1464 1497 1.466167 CCTTGTGATTCTTGAGTGGCG 59.534 52.381 0.00 0.00 0.00 5.69
1490 1523 0.036388 GTTTCTGCGAGGTCATGGGA 60.036 55.000 0.00 0.00 0.00 4.37
1493 1526 1.788229 TCTGCGAGGTCATGGGATTA 58.212 50.000 0.00 0.00 0.00 1.75
1503 1536 6.070538 CGAGGTCATGGGATTATAGGATCTTT 60.071 42.308 0.00 0.00 0.00 2.52
1532 1567 9.698309 TCACTTCTTTGAATTTTGTTTGTACAA 57.302 25.926 3.59 3.59 42.34 2.41
1548 1583 2.472695 ACAACTCTGGCTATTGCGAA 57.527 45.000 0.00 0.00 40.82 4.70
1549 1584 2.778299 ACAACTCTGGCTATTGCGAAA 58.222 42.857 0.00 0.00 40.82 3.46
1554 1589 5.023533 ACTCTGGCTATTGCGAAAATCTA 57.976 39.130 0.00 0.00 40.82 1.98
1563 1598 6.798959 GCTATTGCGAAAATCTAGCTAATTGG 59.201 38.462 0.00 0.00 33.63 3.16
1568 1603 4.214332 CGAAAATCTAGCTAATTGGCCCTC 59.786 45.833 10.54 0.00 0.00 4.30
1575 1610 1.940613 GCTAATTGGCCCTCAAGTACG 59.059 52.381 1.65 0.00 38.95 3.67
1587 1622 3.186409 CCTCAAGTACGAACATGTTGGTG 59.814 47.826 29.68 16.64 33.60 4.17
1614 1649 3.745458 CAGCCTTTCTTGAGTGAGAGTTC 59.255 47.826 0.00 0.00 0.00 3.01
1622 1657 1.552337 TGAGTGAGAGTTCCATCCTGC 59.448 52.381 0.00 0.00 0.00 4.85
1633 1668 5.021458 AGTTCCATCCTGCAAATCATTCTT 58.979 37.500 0.00 0.00 0.00 2.52
1729 1764 4.711846 AGTGAAGCTGGTAGTCATCACATA 59.288 41.667 12.16 0.00 39.60 2.29
1759 1794 2.038952 ACAGGATGCTGCTAACACAAGA 59.961 45.455 14.95 0.00 42.53 3.02
1774 1809 5.643379 ACACAAGAAAAGCTGAGAAAACA 57.357 34.783 0.00 0.00 0.00 2.83
1787 1822 2.434336 GAGAAAACAAAGCCCCAAGGTT 59.566 45.455 0.00 0.00 37.97 3.50
1788 1823 3.639561 GAGAAAACAAAGCCCCAAGGTTA 59.360 43.478 0.00 0.00 34.29 2.85
1789 1824 3.641436 AGAAAACAAAGCCCCAAGGTTAG 59.359 43.478 0.00 0.00 34.29 2.34
1790 1825 2.009681 AACAAAGCCCCAAGGTTAGG 57.990 50.000 0.00 0.00 34.29 2.69
1791 1826 0.857675 ACAAAGCCCCAAGGTTAGGT 59.142 50.000 0.00 0.00 34.29 3.08
1864 1899 5.107133 TGCATTAGTACTCTTTTAGACGCC 58.893 41.667 0.00 0.00 0.00 5.68
1939 1976 6.113411 GTGCCACAACTATAATCTGGTAACT 58.887 40.000 0.00 0.00 37.61 2.24
1942 1979 7.120579 TGCCACAACTATAATCTGGTAACTTTG 59.879 37.037 0.00 0.00 37.61 2.77
1943 1980 7.415206 GCCACAACTATAATCTGGTAACTTTGG 60.415 40.741 0.00 0.00 37.61 3.28
2020 2059 9.860898 GTTCAATATGCTCTAAATTCAAAAGGT 57.139 29.630 0.00 0.00 0.00 3.50
2029 2068 7.114953 GCTCTAAATTCAAAAGGTTGCTTGTAC 59.885 37.037 0.00 0.00 34.50 2.90
2035 2074 5.433526 TCAAAAGGTTGCTTGTACTGTACT 58.566 37.500 17.98 0.00 34.50 2.73
2093 2132 2.225091 TGTTGGAAGGATCAATGCTGGT 60.225 45.455 0.00 0.00 0.00 4.00
2612 2660 3.868200 GACCCCAGCCACACCCTTG 62.868 68.421 0.00 0.00 0.00 3.61
2620 2668 1.039856 GCCACACCCTTGAACAATGT 58.960 50.000 0.00 0.00 0.00 2.71
2628 2676 6.878923 CACACCCTTGAACAATGTAATCTCTA 59.121 38.462 0.00 0.00 0.00 2.43
2699 2747 6.741724 TCTCTGGCCCCTTCTTTTAATTATT 58.258 36.000 0.00 0.00 0.00 1.40
2786 2834 6.653320 TGATACACCTCAGTTAAAACCATGTC 59.347 38.462 0.00 0.00 0.00 3.06
2941 2989 8.728088 ACTGCTTTGTTATCAAAAGAAATACG 57.272 30.769 0.90 0.00 42.02 3.06
2942 2990 8.349983 ACTGCTTTGTTATCAAAAGAAATACGT 58.650 29.630 0.00 0.00 42.02 3.57
2943 2991 9.820229 CTGCTTTGTTATCAAAAGAAATACGTA 57.180 29.630 0.00 0.00 42.02 3.57
2944 2992 9.601971 TGCTTTGTTATCAAAAGAAATACGTAC 57.398 29.630 0.00 0.00 42.02 3.67
2959 3007 7.914346 AGAAATACGTACTACATACTGCTGAAC 59.086 37.037 0.00 0.00 0.00 3.18
3041 3153 4.081198 TGCAATTTGGGAGTGAACAAACTT 60.081 37.500 0.00 0.00 39.15 2.66
3149 3261 4.003648 TGCTCTTTTTCCTTGCTAGCTAC 58.996 43.478 17.23 0.00 0.00 3.58
3163 3275 4.022242 TGCTAGCTACCGGATATCTGTTTC 60.022 45.833 17.23 0.00 0.00 2.78
3330 3442 8.062065 TCTGAAAATCTTTTGTAAGGTTGTGT 57.938 30.769 0.00 0.00 34.93 3.72
3334 3446 2.614983 TCTTTTGTAAGGTTGTGTCCGC 59.385 45.455 0.00 0.00 32.02 5.54
3399 3511 6.827251 ACAATTGCTACATTCAGATGAGATGT 59.173 34.615 5.05 12.20 36.73 3.06
3427 3539 5.251932 TCCCATTATGTTTCCACTTCTGGTA 59.748 40.000 0.00 0.00 38.90 3.25
3439 3551 6.317312 TCCACTTCTGGTATACCGGTAATAT 58.683 40.000 26.65 5.92 43.01 1.28
3528 3640 3.715628 ACTGTGTCAATGGAAAGTTGC 57.284 42.857 0.00 0.00 0.00 4.17
3722 3834 1.275291 TGAGCCCCTCTAGTTTGAACG 59.725 52.381 0.00 0.00 0.00 3.95
3849 3962 3.331889 ACAGAGGGAAATGGTTCACAGAT 59.668 43.478 0.00 0.00 39.88 2.90
3983 4096 4.840401 CGAATCACGTCAATTCTTAGCA 57.160 40.909 14.86 0.00 37.22 3.49
3999 4112 0.625316 AGCATTGCCATGGGTAGACA 59.375 50.000 15.13 0.00 0.00 3.41
4001 4114 1.134946 GCATTGCCATGGGTAGACAAC 59.865 52.381 15.13 0.00 0.00 3.32
4021 4134 2.239400 CCAGGGTCTTCCAAGTTTTCC 58.761 52.381 0.00 0.00 38.24 3.13
4057 4170 5.825532 TGATTTATCTTGTGGGGACAATGA 58.174 37.500 0.00 0.00 46.06 2.57
4187 4300 1.133606 GTTCAACACCTCCCCAAAGGA 60.134 52.381 0.00 0.00 44.91 3.36
4209 4322 6.095021 AGGAAAATTAGCTTCGGGTAATGAAC 59.905 38.462 0.00 0.00 44.67 3.18
4336 4449 0.536260 ATCAGAGAGCAGTCTGTGGC 59.464 55.000 13.37 0.00 43.02 5.01
4371 4484 4.142609 TCAGATACTTCATGGCAACCTC 57.857 45.455 0.00 0.00 0.00 3.85
4384 4497 2.229784 GGCAACCTCAGTTTTCCAGATG 59.770 50.000 0.00 0.00 32.45 2.90
4471 4584 3.918294 TGATGATTCTGATGCTGGACA 57.082 42.857 0.00 0.00 0.00 4.02
4582 4695 2.615912 GCAGTATCTCCAACTTCCATGC 59.384 50.000 0.00 0.00 0.00 4.06
4639 4752 6.662755 ACAGAAGTTGCCTGAATTCCATATA 58.337 36.000 2.27 0.00 35.69 0.86
4674 4787 0.962356 CCCTTTTGAGCAGCGGTCAT 60.962 55.000 10.38 0.00 39.81 3.06
4699 4812 1.528586 CTTTTGTGACTCTGCTGTCCG 59.471 52.381 0.00 0.00 36.21 4.79
4743 4856 4.458989 TGGTGGATAAACATTTGACAGAGC 59.541 41.667 0.00 0.00 0.00 4.09
4769 4882 6.259608 CAGAGTTGTTTGATGATCCTGATACC 59.740 42.308 0.00 0.00 0.00 2.73
4811 4924 5.163612 GGATCAGCTACCTTTGAAATTCACC 60.164 44.000 0.00 0.00 0.00 4.02
5060 5173 1.803334 TTGGTTTCTCGTCGAATGGG 58.197 50.000 0.00 0.00 0.00 4.00
5123 5236 0.468226 TCGAAGGCAACACCAAGAGT 59.532 50.000 0.00 0.00 43.14 3.24
5124 5237 1.689813 TCGAAGGCAACACCAAGAGTA 59.310 47.619 0.00 0.00 43.14 2.59
5204 5317 1.078759 GCGAGACTCCCATGTTGTCG 61.079 60.000 0.00 0.00 36.01 4.35
5265 5381 6.959639 TCCTTGAAGTGCTATTTGTTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
5439 5556 0.392998 GTGGCTGTCGGTGATGGAAT 60.393 55.000 0.00 0.00 0.00 3.01
5455 5572 0.381801 GAATGCCTGCACGGTTATGG 59.618 55.000 0.00 0.00 34.25 2.74
5521 5638 3.164977 TTGCCGTGGTCAGGGTCA 61.165 61.111 10.80 7.02 38.54 4.02
5667 5784 0.109342 GGTCCATCTACCCTGGCATG 59.891 60.000 0.00 0.00 33.02 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.203013 AGGTTTCAAGTGGGTTAGGCC 60.203 52.381 0.00 0.00 0.00 5.19
5 6 2.287977 AGGTTTCAAGTGGGTTAGGC 57.712 50.000 0.00 0.00 0.00 3.93
6 7 5.831525 AGTTTAAGGTTTCAAGTGGGTTAGG 59.168 40.000 0.00 0.00 0.00 2.69
7 8 6.954487 AGTTTAAGGTTTCAAGTGGGTTAG 57.046 37.500 0.00 0.00 0.00 2.34
8 9 6.999871 CCTAGTTTAAGGTTTCAAGTGGGTTA 59.000 38.462 0.00 0.00 31.46 2.85
9 10 5.831525 CCTAGTTTAAGGTTTCAAGTGGGTT 59.168 40.000 0.00 0.00 31.46 4.11
10 11 5.382616 CCTAGTTTAAGGTTTCAAGTGGGT 58.617 41.667 0.00 0.00 31.46 4.51
11 12 4.217767 GCCTAGTTTAAGGTTTCAAGTGGG 59.782 45.833 0.00 0.00 39.02 4.61
12 13 4.217767 GGCCTAGTTTAAGGTTTCAAGTGG 59.782 45.833 0.00 0.00 39.02 4.00
13 14 4.217767 GGGCCTAGTTTAAGGTTTCAAGTG 59.782 45.833 0.84 0.00 39.02 3.16
14 15 4.141111 TGGGCCTAGTTTAAGGTTTCAAGT 60.141 41.667 4.53 0.00 39.02 3.16
15 16 4.403734 TGGGCCTAGTTTAAGGTTTCAAG 58.596 43.478 4.53 0.00 39.02 3.02
16 17 4.456662 TGGGCCTAGTTTAAGGTTTCAA 57.543 40.909 4.53 0.00 39.02 2.69
17 18 4.043561 TCATGGGCCTAGTTTAAGGTTTCA 59.956 41.667 4.53 0.00 39.02 2.69
18 19 4.595986 TCATGGGCCTAGTTTAAGGTTTC 58.404 43.478 4.53 0.00 39.02 2.78
19 20 4.668138 TCATGGGCCTAGTTTAAGGTTT 57.332 40.909 4.53 0.00 39.02 3.27
20 21 4.668138 TTCATGGGCCTAGTTTAAGGTT 57.332 40.909 4.53 0.00 39.02 3.50
21 22 4.668138 TTTCATGGGCCTAGTTTAAGGT 57.332 40.909 4.53 0.00 39.02 3.50
22 23 5.993748 TTTTTCATGGGCCTAGTTTAAGG 57.006 39.130 4.53 0.00 39.87 2.69
41 42 1.485895 AGCACCACCACTTGCATTTTT 59.514 42.857 0.00 0.00 41.48 1.94
42 43 1.122227 AGCACCACCACTTGCATTTT 58.878 45.000 0.00 0.00 41.48 1.82
43 44 1.993956 TAGCACCACCACTTGCATTT 58.006 45.000 0.00 0.00 41.48 2.32
44 45 1.993956 TTAGCACCACCACTTGCATT 58.006 45.000 0.00 0.00 41.48 3.56
45 46 1.993956 TTTAGCACCACCACTTGCAT 58.006 45.000 0.00 0.00 41.48 3.96
46 47 1.680735 CTTTTAGCACCACCACTTGCA 59.319 47.619 0.00 0.00 41.48 4.08
47 48 1.681264 ACTTTTAGCACCACCACTTGC 59.319 47.619 0.00 0.00 39.16 4.01
48 49 4.111916 CAAACTTTTAGCACCACCACTTG 58.888 43.478 0.00 0.00 0.00 3.16
49 50 3.767131 ACAAACTTTTAGCACCACCACTT 59.233 39.130 0.00 0.00 0.00 3.16
50 51 3.361786 ACAAACTTTTAGCACCACCACT 58.638 40.909 0.00 0.00 0.00 4.00
51 52 3.490249 GGACAAACTTTTAGCACCACCAC 60.490 47.826 0.00 0.00 0.00 4.16
52 53 2.691011 GGACAAACTTTTAGCACCACCA 59.309 45.455 0.00 0.00 0.00 4.17
53 54 2.035449 GGGACAAACTTTTAGCACCACC 59.965 50.000 0.00 0.00 0.00 4.61
54 55 2.691011 TGGGACAAACTTTTAGCACCAC 59.309 45.455 0.00 0.00 31.92 4.16
55 56 3.019799 TGGGACAAACTTTTAGCACCA 57.980 42.857 0.00 0.00 31.92 4.17
70 71 2.029623 TCTTCACTAGCGGTATGGGAC 58.970 52.381 0.00 0.00 0.00 4.46
71 72 2.447408 TCTTCACTAGCGGTATGGGA 57.553 50.000 0.00 0.00 0.00 4.37
72 73 3.118738 ACTTTCTTCACTAGCGGTATGGG 60.119 47.826 0.00 0.00 0.00 4.00
73 74 4.124851 ACTTTCTTCACTAGCGGTATGG 57.875 45.455 0.00 0.00 0.00 2.74
74 75 8.350722 TCTAATACTTTCTTCACTAGCGGTATG 58.649 37.037 0.00 0.00 0.00 2.39
75 76 8.351461 GTCTAATACTTTCTTCACTAGCGGTAT 58.649 37.037 0.00 0.00 0.00 2.73
76 77 7.201767 GGTCTAATACTTTCTTCACTAGCGGTA 60.202 40.741 0.00 0.00 0.00 4.02
77 78 6.405619 GGTCTAATACTTTCTTCACTAGCGGT 60.406 42.308 0.00 0.00 0.00 5.68
78 79 5.978322 GGTCTAATACTTTCTTCACTAGCGG 59.022 44.000 0.00 0.00 0.00 5.52
79 80 6.472808 GTGGTCTAATACTTTCTTCACTAGCG 59.527 42.308 0.00 0.00 0.00 4.26
80 81 7.548967 AGTGGTCTAATACTTTCTTCACTAGC 58.451 38.462 0.00 0.00 32.13 3.42
81 82 9.930693 AAAGTGGTCTAATACTTTCTTCACTAG 57.069 33.333 0.00 0.00 41.83 2.57
100 101 9.696572 TGTAGAGAACTCACTATATAAAGTGGT 57.303 33.333 5.92 1.41 45.69 4.16
101 102 9.953697 GTGTAGAGAACTCACTATATAAAGTGG 57.046 37.037 5.92 0.90 45.69 4.00
102 103 9.953697 GGTGTAGAGAACTCACTATATAAAGTG 57.046 37.037 4.64 0.00 46.78 3.16
103 104 9.696572 TGGTGTAGAGAACTCACTATATAAAGT 57.303 33.333 4.64 0.00 33.30 2.66
111 112 9.696572 ACTAAATATGGTGTAGAGAACTCACTA 57.303 33.333 4.64 0.00 33.30 2.74
112 113 8.470805 CACTAAATATGGTGTAGAGAACTCACT 58.529 37.037 4.64 0.00 33.67 3.41
113 114 8.467598 TCACTAAATATGGTGTAGAGAACTCAC 58.532 37.037 4.64 2.03 38.97 3.51
114 115 8.589701 TCACTAAATATGGTGTAGAGAACTCA 57.410 34.615 4.64 0.00 38.97 3.41
115 116 9.469807 CATCACTAAATATGGTGTAGAGAACTC 57.530 37.037 0.00 0.00 38.97 3.01
116 117 8.982723 ACATCACTAAATATGGTGTAGAGAACT 58.017 33.333 0.00 0.00 39.65 3.01
117 118 9.035607 CACATCACTAAATATGGTGTAGAGAAC 57.964 37.037 0.00 0.00 39.42 3.01
118 119 8.758829 ACACATCACTAAATATGGTGTAGAGAA 58.241 33.333 0.00 0.00 39.42 2.87
119 120 8.306313 ACACATCACTAAATATGGTGTAGAGA 57.694 34.615 0.00 0.00 39.42 3.10
120 121 8.948631 AACACATCACTAAATATGGTGTAGAG 57.051 34.615 0.00 0.00 39.42 2.43
123 124 9.607988 CCTTAACACATCACTAAATATGGTGTA 57.392 33.333 0.00 0.00 39.42 2.90
124 125 8.325787 TCCTTAACACATCACTAAATATGGTGT 58.674 33.333 0.00 0.00 42.20 4.16
125 126 8.731275 TCCTTAACACATCACTAAATATGGTG 57.269 34.615 0.00 0.00 39.24 4.17
126 127 9.747898 TTTCCTTAACACATCACTAAATATGGT 57.252 29.630 0.00 0.00 0.00 3.55
135 136 9.793259 TTCTATTTCTTTCCTTAACACATCACT 57.207 29.630 0.00 0.00 0.00 3.41
139 140 9.793259 TGTCTTCTATTTCTTTCCTTAACACAT 57.207 29.630 0.00 0.00 0.00 3.21
140 141 9.621629 TTGTCTTCTATTTCTTTCCTTAACACA 57.378 29.630 0.00 0.00 0.00 3.72
141 142 9.880064 GTTGTCTTCTATTTCTTTCCTTAACAC 57.120 33.333 0.00 0.00 0.00 3.32
142 143 9.621629 TGTTGTCTTCTATTTCTTTCCTTAACA 57.378 29.630 0.00 0.00 0.00 2.41
143 144 9.880064 GTGTTGTCTTCTATTTCTTTCCTTAAC 57.120 33.333 0.00 0.00 0.00 2.01
144 145 8.770828 CGTGTTGTCTTCTATTTCTTTCCTTAA 58.229 33.333 0.00 0.00 0.00 1.85
145 146 7.386848 CCGTGTTGTCTTCTATTTCTTTCCTTA 59.613 37.037 0.00 0.00 0.00 2.69
146 147 6.204882 CCGTGTTGTCTTCTATTTCTTTCCTT 59.795 38.462 0.00 0.00 0.00 3.36
147 148 5.701290 CCGTGTTGTCTTCTATTTCTTTCCT 59.299 40.000 0.00 0.00 0.00 3.36
148 149 5.106673 CCCGTGTTGTCTTCTATTTCTTTCC 60.107 44.000 0.00 0.00 0.00 3.13
149 150 5.617087 GCCCGTGTTGTCTTCTATTTCTTTC 60.617 44.000 0.00 0.00 0.00 2.62
150 151 4.215613 GCCCGTGTTGTCTTCTATTTCTTT 59.784 41.667 0.00 0.00 0.00 2.52
151 152 3.751698 GCCCGTGTTGTCTTCTATTTCTT 59.248 43.478 0.00 0.00 0.00 2.52
152 153 3.244422 TGCCCGTGTTGTCTTCTATTTCT 60.244 43.478 0.00 0.00 0.00 2.52
153 154 3.071479 TGCCCGTGTTGTCTTCTATTTC 58.929 45.455 0.00 0.00 0.00 2.17
154 155 2.812011 GTGCCCGTGTTGTCTTCTATTT 59.188 45.455 0.00 0.00 0.00 1.40
155 156 2.423577 GTGCCCGTGTTGTCTTCTATT 58.576 47.619 0.00 0.00 0.00 1.73
156 157 1.671850 CGTGCCCGTGTTGTCTTCTAT 60.672 52.381 0.00 0.00 0.00 1.98
157 158 0.319211 CGTGCCCGTGTTGTCTTCTA 60.319 55.000 0.00 0.00 0.00 2.10
158 159 1.594293 CGTGCCCGTGTTGTCTTCT 60.594 57.895 0.00 0.00 0.00 2.85
159 160 1.557443 CTCGTGCCCGTGTTGTCTTC 61.557 60.000 0.00 0.00 35.01 2.87
160 161 1.594293 CTCGTGCCCGTGTTGTCTT 60.594 57.895 0.00 0.00 35.01 3.01
161 162 2.029073 CTCGTGCCCGTGTTGTCT 59.971 61.111 0.00 0.00 35.01 3.41
162 163 3.712881 GCTCGTGCCCGTGTTGTC 61.713 66.667 0.00 0.00 35.01 3.18
163 164 4.539083 TGCTCGTGCCCGTGTTGT 62.539 61.111 7.05 0.00 38.71 3.32
164 165 4.012895 GTGCTCGTGCCCGTGTTG 62.013 66.667 7.05 0.00 38.71 3.33
178 179 2.743928 CAACCCTGAGCCTCGTGC 60.744 66.667 0.00 0.00 41.71 5.34
179 180 1.079543 CTCAACCCTGAGCCTCGTG 60.080 63.158 0.00 0.00 42.66 4.35
180 181 3.382111 CTCAACCCTGAGCCTCGT 58.618 61.111 0.00 0.00 42.66 4.18
187 188 2.280797 GTGCACGCTCAACCCTGA 60.281 61.111 0.00 0.00 0.00 3.86
188 189 3.716006 CGTGCACGCTCAACCCTG 61.716 66.667 28.16 0.00 0.00 4.45
189 190 4.235762 ACGTGCACGCTCAACCCT 62.236 61.111 37.35 14.16 44.43 4.34
190 191 4.012895 CACGTGCACGCTCAACCC 62.013 66.667 37.35 0.00 44.43 4.11
191 192 2.943345 CTCACGTGCACGCTCAACC 61.943 63.158 37.35 0.00 44.43 3.77
192 193 1.949133 TCTCACGTGCACGCTCAAC 60.949 57.895 37.35 0.00 44.43 3.18
193 194 1.949133 GTCTCACGTGCACGCTCAA 60.949 57.895 37.35 18.97 44.43 3.02
194 195 2.354656 GTCTCACGTGCACGCTCA 60.355 61.111 37.35 20.65 44.43 4.26
195 196 1.734477 ATGTCTCACGTGCACGCTC 60.734 57.895 37.35 22.19 44.43 5.03
196 197 2.023771 CATGTCTCACGTGCACGCT 61.024 57.895 37.35 22.14 44.43 5.07
197 198 1.556591 TTCATGTCTCACGTGCACGC 61.557 55.000 37.35 21.62 44.43 5.34
198 199 0.161658 GTTCATGTCTCACGTGCACG 59.838 55.000 35.99 35.99 46.33 5.34
199 200 0.161658 CGTTCATGTCTCACGTGCAC 59.838 55.000 11.67 6.82 35.17 4.57
200 201 0.249280 ACGTTCATGTCTCACGTGCA 60.249 50.000 11.67 3.40 45.15 4.57
201 202 2.517598 ACGTTCATGTCTCACGTGC 58.482 52.632 11.67 0.00 45.15 5.34
204 205 2.092681 CCATTCACGTTCATGTCTCACG 59.907 50.000 0.00 0.39 39.86 4.35
205 206 3.067106 ACCATTCACGTTCATGTCTCAC 58.933 45.455 0.00 0.00 0.00 3.51
206 207 3.006859 AGACCATTCACGTTCATGTCTCA 59.993 43.478 0.00 0.00 0.00 3.27
207 208 3.369147 CAGACCATTCACGTTCATGTCTC 59.631 47.826 0.00 0.00 0.00 3.36
208 209 3.329386 CAGACCATTCACGTTCATGTCT 58.671 45.455 0.00 0.00 0.00 3.41
209 210 2.159653 GCAGACCATTCACGTTCATGTC 60.160 50.000 0.00 0.00 0.00 3.06
210 211 1.806542 GCAGACCATTCACGTTCATGT 59.193 47.619 0.00 0.00 0.00 3.21
215 216 0.250124 TTCGGCAGACCATTCACGTT 60.250 50.000 0.00 0.00 34.57 3.99
216 217 0.250124 TTTCGGCAGACCATTCACGT 60.250 50.000 0.00 0.00 34.57 4.49
237 238 1.186200 CCTGGAAGTCATCAGACCGA 58.814 55.000 0.00 0.00 46.15 4.69
243 244 2.989639 CGCCCCTGGAAGTCATCA 59.010 61.111 0.00 0.00 0.00 3.07
248 249 2.640581 AAAGTTGCGCCCCTGGAAGT 62.641 55.000 4.18 0.00 0.00 3.01
252 253 1.463553 AAAGAAAGTTGCGCCCCTGG 61.464 55.000 4.18 0.00 0.00 4.45
256 257 2.225348 GCAAAAGAAAGTTGCGCCC 58.775 52.632 4.18 0.00 41.74 6.13
261 262 8.784176 CAAAAATAAAACGGCAAAAGAAAGTTG 58.216 29.630 0.00 0.00 0.00 3.16
267 268 7.708752 AGACATCAAAAATAAAACGGCAAAAGA 59.291 29.630 0.00 0.00 0.00 2.52
268 269 7.850501 AGACATCAAAAATAAAACGGCAAAAG 58.149 30.769 0.00 0.00 0.00 2.27
274 275 5.694006 TGCCAAGACATCAAAAATAAAACGG 59.306 36.000 0.00 0.00 0.00 4.44
339 342 6.618287 TCACAATCTCAAACGACTTGATTT 57.382 33.333 5.40 1.69 43.20 2.17
341 344 5.062683 CGATCACAATCTCAAACGACTTGAT 59.937 40.000 5.40 0.00 43.20 2.57
350 353 2.682836 TGTCGCGATCACAATCTCAAA 58.317 42.857 14.06 0.00 0.00 2.69
358 362 1.599419 CGGTATCATGTCGCGATCACA 60.599 52.381 14.06 6.87 0.00 3.58
366 370 0.319040 CCAGAGGCGGTATCATGTCG 60.319 60.000 0.00 0.00 0.00 4.35
371 375 0.554305 TAGGACCAGAGGCGGTATCA 59.446 55.000 0.00 0.00 40.22 2.15
377 381 6.516718 CCAATATATAATAGGACCAGAGGCG 58.483 44.000 0.00 0.00 0.00 5.52
378 382 6.292150 GCCAATATATAATAGGACCAGAGGC 58.708 44.000 0.00 0.00 0.00 4.70
384 388 6.321821 TGGTGGCCAATATATAATAGGACC 57.678 41.667 7.24 0.00 0.00 4.46
399 403 2.033448 GGTCGTGATTGGTGGCCA 59.967 61.111 0.00 0.00 0.00 5.36
400 404 1.175983 TTTGGTCGTGATTGGTGGCC 61.176 55.000 0.00 0.00 0.00 5.36
401 405 0.671251 TTTTGGTCGTGATTGGTGGC 59.329 50.000 0.00 0.00 0.00 5.01
402 406 2.099921 TGTTTTTGGTCGTGATTGGTGG 59.900 45.455 0.00 0.00 0.00 4.61
403 407 3.112580 GTGTTTTTGGTCGTGATTGGTG 58.887 45.455 0.00 0.00 0.00 4.17
405 409 3.428746 TGTGTTTTTGGTCGTGATTGG 57.571 42.857 0.00 0.00 0.00 3.16
407 411 3.562141 TCGATGTGTTTTTGGTCGTGATT 59.438 39.130 0.00 0.00 34.24 2.57
411 415 4.099824 GTTTTCGATGTGTTTTTGGTCGT 58.900 39.130 0.00 0.00 34.24 4.34
414 422 4.810790 TGTGTTTTCGATGTGTTTTTGGT 58.189 34.783 0.00 0.00 0.00 3.67
420 428 6.861065 AACTCTATGTGTTTTCGATGTGTT 57.139 33.333 0.00 0.00 0.00 3.32
427 435 6.065153 CGAGACAAAACTCTATGTGTTTTCG 58.935 40.000 7.29 5.56 43.20 3.46
428 436 6.945072 ACGAGACAAAACTCTATGTGTTTTC 58.055 36.000 7.29 0.46 43.20 2.29
436 444 4.883083 TGCAAGACGAGACAAAACTCTAT 58.117 39.130 0.00 0.00 35.06 1.98
440 448 3.270877 AGTTGCAAGACGAGACAAAACT 58.729 40.909 0.00 0.00 0.00 2.66
459 467 0.317479 GACTACGGTGGTGAGCAAGT 59.683 55.000 0.49 0.00 0.00 3.16
460 468 0.603569 AGACTACGGTGGTGAGCAAG 59.396 55.000 0.49 0.00 0.00 4.01
462 470 1.171308 GTAGACTACGGTGGTGAGCA 58.829 55.000 0.49 0.00 0.00 4.26
463 471 1.401199 GAGTAGACTACGGTGGTGAGC 59.599 57.143 0.49 0.00 0.00 4.26
464 472 2.015587 GGAGTAGACTACGGTGGTGAG 58.984 57.143 0.49 0.00 0.00 3.51
465 473 1.676916 CGGAGTAGACTACGGTGGTGA 60.677 57.143 6.39 0.00 46.14 4.02
467 475 3.165606 CGGAGTAGACTACGGTGGT 57.834 57.895 6.39 0.00 46.14 4.16
485 493 3.186047 CACGTCGGCATTCGGGAC 61.186 66.667 0.00 0.00 39.77 4.46
503 511 2.278206 CTCTCCCGCACGTCGATG 60.278 66.667 2.26 2.26 41.67 3.84
508 516 3.575351 GACTTGCTCTCCCGCACGT 62.575 63.158 0.00 0.00 43.84 4.49
510 518 1.446966 GAGACTTGCTCTCCCGCAC 60.447 63.158 0.00 0.00 39.87 5.34
521 529 4.641094 ACTATGAGTAGTTCCGGAGACTTG 59.359 45.833 19.76 11.78 37.94 3.16
523 531 4.453751 GACTATGAGTAGTTCCGGAGACT 58.546 47.826 18.91 18.91 41.19 3.24
525 533 3.118482 ACGACTATGAGTAGTTCCGGAGA 60.118 47.826 3.34 0.00 41.19 3.71
528 536 3.204526 AGACGACTATGAGTAGTTCCGG 58.795 50.000 0.00 0.00 41.19 5.14
529 537 4.807834 TGTAGACGACTATGAGTAGTTCCG 59.192 45.833 0.00 0.00 41.19 4.30
530 538 6.485393 GTTGTAGACGACTATGAGTAGTTCC 58.515 44.000 0.00 0.00 41.19 3.62
546 554 3.044986 TGTTGCTAACGACGTTGTAGAC 58.955 45.455 23.00 15.45 32.23 2.59
547 555 3.003585 TCTGTTGCTAACGACGTTGTAGA 59.996 43.478 23.00 13.03 32.23 2.59
548 556 3.302555 TCTGTTGCTAACGACGTTGTAG 58.697 45.455 23.00 14.11 32.23 2.74
550 558 2.212869 TCTGTTGCTAACGACGTTGT 57.787 45.000 23.00 1.48 32.23 3.32
552 560 3.021269 TGATCTGTTGCTAACGACGTT 57.979 42.857 18.47 18.47 32.23 3.99
560 587 4.284829 TGTTGGTGATGATCTGTTGCTA 57.715 40.909 0.00 0.00 0.00 3.49
572 599 7.885009 TGTTATTGATGATGATGTTGGTGAT 57.115 32.000 0.00 0.00 0.00 3.06
575 602 6.513884 GCGATGTTATTGATGATGATGTTGGT 60.514 38.462 0.00 0.00 0.00 3.67
576 603 5.854866 GCGATGTTATTGATGATGATGTTGG 59.145 40.000 0.00 0.00 0.00 3.77
580 607 6.905609 GCATAGCGATGTTATTGATGATGATG 59.094 38.462 8.67 0.00 35.30 3.07
584 611 6.205270 TGTTGCATAGCGATGTTATTGATGAT 59.795 34.615 8.67 0.00 35.30 2.45
592 619 5.220322 CGTTAGTTGTTGCATAGCGATGTTA 60.220 40.000 8.67 0.00 35.30 2.41
595 622 3.305897 TCGTTAGTTGTTGCATAGCGATG 59.694 43.478 1.93 1.93 36.02 3.84
596 623 3.517602 TCGTTAGTTGTTGCATAGCGAT 58.482 40.909 0.00 0.00 29.10 4.58
598 625 3.120820 TGTTCGTTAGTTGTTGCATAGCG 60.121 43.478 0.00 0.00 0.00 4.26
602 629 4.084745 CGTACTGTTCGTTAGTTGTTGCAT 60.085 41.667 0.00 0.00 0.00 3.96
603 630 3.243410 CGTACTGTTCGTTAGTTGTTGCA 59.757 43.478 0.00 0.00 0.00 4.08
604 631 3.243643 ACGTACTGTTCGTTAGTTGTTGC 59.756 43.478 6.65 0.00 38.38 4.17
605 632 4.736793 AGACGTACTGTTCGTTAGTTGTTG 59.263 41.667 13.54 0.00 41.64 3.33
606 633 4.925068 AGACGTACTGTTCGTTAGTTGTT 58.075 39.130 13.54 0.00 41.64 2.83
608 635 5.447214 CGATAGACGTACTGTTCGTTAGTTG 59.553 44.000 13.54 3.82 41.64 3.16
609 636 5.554636 CGATAGACGTACTGTTCGTTAGTT 58.445 41.667 13.54 3.86 41.64 2.24
625 653 7.644490 AGAGACATAAACAGATCACGATAGAC 58.356 38.462 0.00 0.00 41.38 2.59
628 656 9.508642 AGATAGAGACATAAACAGATCACGATA 57.491 33.333 0.00 0.00 0.00 2.92
653 681 6.779115 TTGCACATGTAACAACTACTACAG 57.221 37.500 0.00 0.00 31.81 2.74
655 683 7.129109 ACATTGCACATGTAACAACTACTAC 57.871 36.000 13.90 0.00 0.00 2.73
656 684 7.227711 ACAACATTGCACATGTAACAACTACTA 59.772 33.333 13.90 0.00 0.00 1.82
657 685 6.039270 ACAACATTGCACATGTAACAACTACT 59.961 34.615 13.90 0.00 0.00 2.57
705 734 8.459911 TGCAACAATCTACTACTAGCATACTA 57.540 34.615 0.00 0.00 0.00 1.82
787 816 9.669353 GTAGATTATTGCAGGTGTTGAAATATG 57.331 33.333 0.00 0.00 37.19 1.78
796 825 5.045578 AGTTGGAGTAGATTATTGCAGGTGT 60.046 40.000 0.00 0.00 0.00 4.16
799 828 6.483640 GGTAAGTTGGAGTAGATTATTGCAGG 59.516 42.308 0.00 0.00 0.00 4.85
803 832 9.193133 CGTATGGTAAGTTGGAGTAGATTATTG 57.807 37.037 0.00 0.00 0.00 1.90
804 833 8.365647 CCGTATGGTAAGTTGGAGTAGATTATT 58.634 37.037 0.00 0.00 0.00 1.40
805 834 7.039223 CCCGTATGGTAAGTTGGAGTAGATTAT 60.039 40.741 0.00 0.00 0.00 1.28
806 835 6.266103 CCCGTATGGTAAGTTGGAGTAGATTA 59.734 42.308 0.00 0.00 0.00 1.75
807 836 5.070047 CCCGTATGGTAAGTTGGAGTAGATT 59.930 44.000 0.00 0.00 0.00 2.40
808 837 4.587684 CCCGTATGGTAAGTTGGAGTAGAT 59.412 45.833 0.00 0.00 0.00 1.98
809 838 3.956199 CCCGTATGGTAAGTTGGAGTAGA 59.044 47.826 0.00 0.00 0.00 2.59
810 839 3.956199 TCCCGTATGGTAAGTTGGAGTAG 59.044 47.826 0.00 0.00 34.77 2.57
811 840 3.979911 TCCCGTATGGTAAGTTGGAGTA 58.020 45.455 0.00 0.00 34.77 2.59
812 841 2.823959 TCCCGTATGGTAAGTTGGAGT 58.176 47.619 0.00 0.00 34.77 3.85
813 842 3.197116 AGTTCCCGTATGGTAAGTTGGAG 59.803 47.826 0.00 0.00 34.77 3.86
814 843 3.175594 AGTTCCCGTATGGTAAGTTGGA 58.824 45.455 0.00 0.00 34.77 3.53
815 844 3.622166 AGTTCCCGTATGGTAAGTTGG 57.378 47.619 0.00 0.00 34.77 3.77
816 845 4.571919 TCAAGTTCCCGTATGGTAAGTTG 58.428 43.478 16.92 16.92 36.69 3.16
817 846 4.895668 TCAAGTTCCCGTATGGTAAGTT 57.104 40.909 0.00 0.00 34.77 2.66
818 847 4.895668 TTCAAGTTCCCGTATGGTAAGT 57.104 40.909 0.00 0.00 34.77 2.24
819 848 6.563222 TTTTTCAAGTTCCCGTATGGTAAG 57.437 37.500 0.00 0.00 34.77 2.34
842 871 6.301169 TGGAAACCCACATGTTAAGTTTTT 57.699 33.333 15.21 2.90 31.14 1.94
843 872 5.941555 TGGAAACCCACATGTTAAGTTTT 57.058 34.783 15.21 2.01 31.14 2.43
855 884 6.218295 GTCAACTGACAAGTGGAAACCCAC 62.218 50.000 6.49 6.49 46.83 4.61
856 885 2.025793 TCAACTGACAAGTGGAAACCCA 60.026 45.455 0.00 0.00 33.13 4.51
857 886 2.357952 GTCAACTGACAAGTGGAAACCC 59.642 50.000 4.96 0.00 38.13 4.11
858 887 2.357952 GGTCAACTGACAAGTGGAAACC 59.642 50.000 11.76 0.00 46.47 3.27
859 888 3.013921 TGGTCAACTGACAAGTGGAAAC 58.986 45.455 11.76 0.00 46.47 2.78
860 889 3.054728 TCTGGTCAACTGACAAGTGGAAA 60.055 43.478 12.88 0.00 44.54 3.13
861 890 2.503765 TCTGGTCAACTGACAAGTGGAA 59.496 45.455 12.88 0.00 44.54 3.53
862 891 2.103094 CTCTGGTCAACTGACAAGTGGA 59.897 50.000 12.88 2.97 44.54 4.02
863 892 2.487934 CTCTGGTCAACTGACAAGTGG 58.512 52.381 12.88 5.28 44.54 4.00
864 893 1.869767 GCTCTGGTCAACTGACAAGTG 59.130 52.381 12.88 11.70 44.54 3.16
865 894 1.202698 GGCTCTGGTCAACTGACAAGT 60.203 52.381 12.88 0.00 44.54 3.16
866 895 1.517242 GGCTCTGGTCAACTGACAAG 58.483 55.000 11.76 9.77 45.38 3.16
867 896 0.249868 CGGCTCTGGTCAACTGACAA 60.250 55.000 11.76 0.00 46.47 3.18
868 897 1.112916 TCGGCTCTGGTCAACTGACA 61.113 55.000 11.76 0.00 46.47 3.58
869 898 0.033504 TTCGGCTCTGGTCAACTGAC 59.966 55.000 0.98 0.98 44.04 3.51
870 899 0.318441 CTTCGGCTCTGGTCAACTGA 59.682 55.000 0.00 0.00 0.00 3.41
871 900 0.671781 CCTTCGGCTCTGGTCAACTG 60.672 60.000 0.00 0.00 0.00 3.16
872 901 1.674057 CCTTCGGCTCTGGTCAACT 59.326 57.895 0.00 0.00 0.00 3.16
873 902 2.035442 GCCTTCGGCTCTGGTCAAC 61.035 63.158 0.00 0.00 46.69 3.18
874 903 2.347490 GCCTTCGGCTCTGGTCAA 59.653 61.111 0.00 0.00 46.69 3.18
883 912 2.126850 GAAGTTTGCGCCTTCGGC 60.127 61.111 4.18 0.00 46.75 5.54
884 913 2.561373 GGAAGTTTGCGCCTTCGG 59.439 61.111 15.65 0.00 39.36 4.30
885 914 2.561373 GGGAAGTTTGCGCCTTCG 59.439 61.111 15.65 0.00 39.36 3.79
886 915 2.962569 GGGGAAGTTTGCGCCTTC 59.037 61.111 14.33 14.33 38.05 3.46
887 916 2.983592 CGGGGAAGTTTGCGCCTT 60.984 61.111 4.18 0.00 36.31 4.35
890 919 3.610791 GAAGCGGGGAAGTTTGCGC 62.611 63.158 0.00 0.00 0.00 6.09
891 920 2.561373 GAAGCGGGGAAGTTTGCG 59.439 61.111 0.00 0.00 0.00 4.85
892 921 1.587043 GAGGAAGCGGGGAAGTTTGC 61.587 60.000 0.00 0.00 0.00 3.68
893 922 0.960861 GGAGGAAGCGGGGAAGTTTG 60.961 60.000 0.00 0.00 0.00 2.93
894 923 1.379146 GGAGGAAGCGGGGAAGTTT 59.621 57.895 0.00 0.00 0.00 2.66
895 924 2.603652 GGGAGGAAGCGGGGAAGTT 61.604 63.158 0.00 0.00 0.00 2.66
896 925 3.009714 GGGAGGAAGCGGGGAAGT 61.010 66.667 0.00 0.00 0.00 3.01
897 926 3.798511 GGGGAGGAAGCGGGGAAG 61.799 72.222 0.00 0.00 0.00 3.46
898 927 4.348495 AGGGGAGGAAGCGGGGAA 62.348 66.667 0.00 0.00 0.00 3.97
899 928 4.798682 GAGGGGAGGAAGCGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
901 930 2.137177 TTTTGAGGGGAGGAAGCGGG 62.137 60.000 0.00 0.00 0.00 6.13
902 931 0.251165 TTTTTGAGGGGAGGAAGCGG 60.251 55.000 0.00 0.00 0.00 5.52
903 932 3.339547 TTTTTGAGGGGAGGAAGCG 57.660 52.632 0.00 0.00 0.00 4.68
933 962 0.320683 GCAGCAAGCGGGGAATTTTT 60.321 50.000 0.00 0.00 0.00 1.94
934 963 1.293179 GCAGCAAGCGGGGAATTTT 59.707 52.632 0.00 0.00 0.00 1.82
935 964 2.973082 GCAGCAAGCGGGGAATTT 59.027 55.556 0.00 0.00 0.00 1.82
1132 1161 1.296056 CGTAAAAGCGGTGGAGGTGG 61.296 60.000 0.00 0.00 0.00 4.61
1134 1163 0.611714 ATCGTAAAAGCGGTGGAGGT 59.388 50.000 0.00 0.00 0.00 3.85
1162 1191 1.071857 GTTCCAAGAACTCGAGGGGTT 59.928 52.381 18.41 2.34 0.00 4.11
1189 1218 1.446272 GACGGGAACTTCTGCCTCG 60.446 63.158 0.00 0.00 31.94 4.63
1192 1221 0.250338 ACAAGACGGGAACTTCTGCC 60.250 55.000 0.00 0.00 38.11 4.85
1248 1280 4.459390 TCGAACCGTAGATTCAAATCCA 57.541 40.909 0.00 0.00 36.04 3.41
1252 1284 8.600625 CAATAAGAATCGAACCGTAGATTCAAA 58.399 33.333 21.73 14.05 0.00 2.69
1255 1287 6.921857 TCCAATAAGAATCGAACCGTAGATTC 59.078 38.462 16.14 16.14 0.00 2.52
1261 1293 4.181578 CAGTCCAATAAGAATCGAACCGT 58.818 43.478 0.00 0.00 0.00 4.83
1274 1306 2.092429 GGACCAGCATTCCAGTCCAATA 60.092 50.000 3.21 0.00 46.61 1.90
1308 1340 8.522830 TGTCATGAACTCTTCTGTTTTTCTTTT 58.477 29.630 0.00 0.00 0.00 2.27
1332 1365 1.786441 TCCCAACTCTCCCCAAAATGT 59.214 47.619 0.00 0.00 0.00 2.71
1360 1393 5.986135 CACCAAATCCTACTAAATCGAGAGG 59.014 44.000 0.00 0.00 0.00 3.69
1387 1420 2.413112 GGAAGCGTACGGACTTTAAACC 59.587 50.000 18.39 6.40 0.00 3.27
1396 1429 2.568090 GGAACGGAAGCGTACGGA 59.432 61.111 18.39 0.00 0.00 4.69
1401 1434 0.323725 TAGGTAGGGAACGGAAGCGT 60.324 55.000 0.00 0.00 0.00 5.07
1423 1456 1.508632 ACAGACGGAAACCATCAACG 58.491 50.000 0.00 0.00 0.00 4.10
1431 1464 2.557317 TCACAAGGAACAGACGGAAAC 58.443 47.619 0.00 0.00 0.00 2.78
1437 1470 5.049818 CACTCAAGAATCACAAGGAACAGAC 60.050 44.000 0.00 0.00 0.00 3.51
1464 1497 0.878961 ACCTCGCAGAAACCGAACAC 60.879 55.000 0.00 0.00 34.09 3.32
1507 1540 9.739786 GTTGTACAAACAAAATTCAAAGAAGTG 57.260 29.630 10.51 0.00 46.84 3.16
1532 1567 3.878778 AGATTTTCGCAATAGCCAGAGT 58.121 40.909 0.00 0.00 37.52 3.24
1548 1583 4.796110 TGAGGGCCAATTAGCTAGATTT 57.204 40.909 6.18 0.00 0.00 2.17
1549 1584 4.166919 ACTTGAGGGCCAATTAGCTAGATT 59.833 41.667 6.18 0.00 33.68 2.40
1554 1589 2.420129 CGTACTTGAGGGCCAATTAGCT 60.420 50.000 6.18 0.00 33.68 3.32
1563 1598 2.094762 ACATGTTCGTACTTGAGGGC 57.905 50.000 13.73 0.00 34.47 5.19
1568 1603 5.146460 CAATCACCAACATGTTCGTACTTG 58.854 41.667 8.48 11.04 35.98 3.16
1575 1610 2.331194 GCTGCAATCACCAACATGTTC 58.669 47.619 8.48 0.00 0.00 3.18
1587 1622 2.816087 TCACTCAAGAAAGGCTGCAATC 59.184 45.455 0.50 0.00 0.00 2.67
1614 1649 8.202137 AGAAATAAAGAATGATTTGCAGGATGG 58.798 33.333 0.00 0.00 35.86 3.51
1622 1657 8.991243 TGAAGCCAGAAATAAAGAATGATTTG 57.009 30.769 0.00 0.00 0.00 2.32
1633 1668 9.187996 TCAATCATTACATGAAGCCAGAAATAA 57.812 29.630 0.00 0.00 43.50 1.40
1658 1693 5.486526 CCTTCCATCTGCCATTAGATAGTC 58.513 45.833 0.00 0.00 35.70 2.59
1729 1764 0.461516 CAGCATCCTGTCTCGCATGT 60.462 55.000 0.00 0.00 34.31 3.21
1759 1794 3.432186 GGGGCTTTGTTTTCTCAGCTTTT 60.432 43.478 0.00 0.00 0.00 2.27
1774 1809 3.765968 CACCTAACCTTGGGGCTTT 57.234 52.632 0.00 0.00 35.63 3.51
1787 1822 2.357257 CCAGTGAGACTAGAGGCACCTA 60.357 54.545 0.00 0.00 31.85 3.08
1788 1823 1.618345 CCAGTGAGACTAGAGGCACCT 60.618 57.143 0.00 0.00 31.85 4.00
1789 1824 0.820871 CCAGTGAGACTAGAGGCACC 59.179 60.000 0.00 0.00 31.85 5.01
1790 1825 1.840737 TCCAGTGAGACTAGAGGCAC 58.159 55.000 0.00 1.06 0.00 5.01
1791 1826 2.171840 GTTCCAGTGAGACTAGAGGCA 58.828 52.381 0.00 0.00 0.00 4.75
1939 1976 7.123547 AGGTTGACACATAAGAAAAGAACCAAA 59.876 33.333 0.00 0.00 34.09 3.28
1942 1979 6.039382 ACAGGTTGACACATAAGAAAAGAACC 59.961 38.462 0.00 0.00 0.00 3.62
1943 1980 7.027778 ACAGGTTGACACATAAGAAAAGAAC 57.972 36.000 0.00 0.00 0.00 3.01
2020 2059 7.713507 ACAATCTAACAAGTACAGTACAAGCAA 59.286 33.333 13.37 0.00 0.00 3.91
2029 2068 5.062308 GGCTCGAACAATCTAACAAGTACAG 59.938 44.000 0.00 0.00 0.00 2.74
2035 2074 4.154015 CACATGGCTCGAACAATCTAACAA 59.846 41.667 0.00 0.00 0.00 2.83
2237 2280 3.117888 GGAAGTGATGCCCAAATAGGAGA 60.118 47.826 0.00 0.00 41.22 3.71
2612 2660 8.887717 ACTTGCTCATTAGAGATTACATTGTTC 58.112 33.333 0.00 0.00 44.98 3.18
2620 2668 7.044181 CACTTCCACTTGCTCATTAGAGATTA 58.956 38.462 0.00 0.00 44.98 1.75
2628 2676 1.985473 TGCACTTCCACTTGCTCATT 58.015 45.000 0.00 0.00 39.62 2.57
2699 2747 6.526526 AGAAGAGTCTAGCGACATATCACTA 58.473 40.000 0.00 0.00 42.73 2.74
2712 2760 7.939039 AGAGGATCAATAGTGAGAAGAGTCTAG 59.061 40.741 0.00 0.00 37.14 2.43
2786 2834 2.662535 TGACCCATTGGCAGGATATG 57.337 50.000 0.00 0.00 33.59 1.78
2941 2989 6.522761 CAAAACGTTCAGCAGTATGTAGTAC 58.477 40.000 0.00 0.00 39.31 2.73
2942 2990 5.119588 GCAAAACGTTCAGCAGTATGTAGTA 59.880 40.000 17.02 0.00 39.31 1.82
2943 2991 4.084013 GCAAAACGTTCAGCAGTATGTAGT 60.084 41.667 17.02 0.00 39.31 2.73
2944 2992 4.152402 AGCAAAACGTTCAGCAGTATGTAG 59.848 41.667 21.93 0.00 39.31 2.74
3016 3128 4.478206 TTGTTCACTCCCAAATTGCAAA 57.522 36.364 1.71 0.00 0.00 3.68
3149 3261 6.761242 TGTACATTTCAGAAACAGATATCCGG 59.239 38.462 0.00 0.00 0.00 5.14
3330 3442 3.452755 AACAACATATGATCTCGCGGA 57.547 42.857 10.38 2.40 0.00 5.54
3334 3446 5.750547 ACACTGCTAACAACATATGATCTCG 59.249 40.000 10.38 0.00 0.00 4.04
3399 3511 8.292444 CAGAAGTGGAAACATAATGGGATTAA 57.708 34.615 0.00 0.00 46.14 1.40
3427 3539 4.768968 AGGTTCTGCGTATATTACCGGTAT 59.231 41.667 16.67 4.07 0.00 2.73
3439 3551 1.541310 CCACTCCCAGGTTCTGCGTA 61.541 60.000 0.00 0.00 0.00 4.42
3528 3640 2.468532 ACCTTTTTCGCAACAACTCG 57.531 45.000 0.00 0.00 0.00 4.18
3591 3703 7.553402 ACCGCACCAACAATATTAAAGTACATA 59.447 33.333 0.00 0.00 0.00 2.29
3599 3711 5.416013 TCAATCACCGCACCAACAATATTAA 59.584 36.000 0.00 0.00 0.00 1.40
3757 3870 9.047947 AGAGGTAAACCAACTAGATAACAGAAT 57.952 33.333 0.00 0.00 38.89 2.40
3849 3962 0.247460 CTGGGATCAGAACGAGCACA 59.753 55.000 0.00 0.00 42.44 4.57
3983 4096 2.143876 GGTTGTCTACCCATGGCAAT 57.856 50.000 6.09 0.00 41.43 3.56
3999 4112 3.296854 GAAAACTTGGAAGACCCTGGTT 58.703 45.455 0.00 0.00 33.98 3.67
4001 4114 2.158460 AGGAAAACTTGGAAGACCCTGG 60.158 50.000 0.00 0.00 35.38 4.45
4034 4147 5.825532 TCATTGTCCCCACAAGATAAATCA 58.174 37.500 0.00 0.00 45.85 2.57
4187 4300 6.127730 CCAGTTCATTACCCGAAGCTAATTTT 60.128 38.462 0.00 0.00 0.00 1.82
4209 4322 3.887110 TCAGATTGAATATTGCAGCCCAG 59.113 43.478 0.00 0.00 0.00 4.45
4336 4449 1.131771 ATCTGATATTGCACGCGACG 58.868 50.000 15.93 4.12 0.00 5.12
4371 4484 2.941720 GCTCTAGGCATCTGGAAAACTG 59.058 50.000 0.00 0.00 41.35 3.16
4384 4497 4.342665 ACCTAGAAGTACAATGCTCTAGGC 59.657 45.833 22.20 0.00 46.38 3.93
4582 4695 3.617706 CACAATGCTCTTGCTCTCACTAG 59.382 47.826 0.00 0.00 40.48 2.57
4639 4752 7.309438 GCTCAAAAGGGTAATCTGAAGTTGAAT 60.309 37.037 0.00 0.00 0.00 2.57
4674 4787 3.070159 ACAGCAGAGTCACAAAAGCTCTA 59.930 43.478 0.00 0.00 37.48 2.43
4699 4812 7.554118 CCACCATTCCATCCATACAAGATATAC 59.446 40.741 0.00 0.00 0.00 1.47
4743 4856 4.582869 TCAGGATCATCAAACAACTCTGG 58.417 43.478 0.00 0.00 0.00 3.86
4769 4882 1.079127 CAGTCCCTGTACAAGCCCG 60.079 63.158 0.00 0.00 0.00 6.13
4811 4924 4.733405 GTGTACTTGGAAAAACTTGAAGCG 59.267 41.667 0.00 0.00 0.00 4.68
4928 5041 4.625742 TGCTTACAAGAACGCTCTGAATAC 59.374 41.667 0.00 0.00 30.03 1.89
5060 5173 9.577110 TCATCTTCAAAATCATTGCAAATACTC 57.423 29.630 1.71 0.00 0.00 2.59
5123 5236 4.645136 AGATCCGATGTACAGAACAAGCTA 59.355 41.667 0.33 0.00 42.70 3.32
5124 5237 3.449018 AGATCCGATGTACAGAACAAGCT 59.551 43.478 0.33 0.00 42.70 3.74
5132 5245 6.791887 AATAATGCAAGATCCGATGTACAG 57.208 37.500 0.33 0.00 0.00 2.74
5133 5246 6.017192 CCAAATAATGCAAGATCCGATGTACA 60.017 38.462 0.00 0.00 0.00 2.90
5204 5317 3.439129 GCTACCACCTTACACCATCAAAC 59.561 47.826 0.00 0.00 0.00 2.93
5265 5381 3.162666 CACTACCAGGGTCAGTCTACAA 58.837 50.000 0.00 0.00 0.00 2.41
5343 5459 4.843624 CAAGGTTTGGAGGGGTCC 57.156 61.111 0.00 0.00 0.00 4.46
5371 5487 4.158394 CCACACTTATTCACCTTGATTGGG 59.842 45.833 0.00 0.00 0.00 4.12
5416 5532 3.296709 ATCACCGACAGCCACCGAC 62.297 63.158 0.00 0.00 0.00 4.79
5420 5536 0.392998 ATTCCATCACCGACAGCCAC 60.393 55.000 0.00 0.00 0.00 5.01
5423 5539 1.718757 GGCATTCCATCACCGACAGC 61.719 60.000 0.00 0.00 0.00 4.40
5428 5544 1.750018 TGCAGGCATTCCATCACCG 60.750 57.895 0.00 0.00 33.74 4.94
5439 5556 1.376683 GTCCATAACCGTGCAGGCA 60.377 57.895 0.00 0.00 46.52 4.75
5455 5572 2.621055 ACTGACCTGCGATCTATCTGTC 59.379 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.