Multiple sequence alignment - TraesCS6B01G251700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G251700 chr6B 100.000 4547 0 0 1 4547 451671011 451675557 0.000000e+00 8397.0
1 TraesCS6B01G251700 chr6D 95.373 1794 61 11 925 2704 290900721 290902506 0.000000e+00 2833.0
2 TraesCS6B01G251700 chr6D 93.899 1557 63 16 2704 4234 290902566 290904116 0.000000e+00 2320.0
3 TraesCS6B01G251700 chr6D 82.090 469 41 13 1 454 290899746 290900186 1.200000e-95 361.0
4 TraesCS6B01G251700 chr6D 78.707 263 38 13 3741 3996 97570995 97571246 4.710000e-35 159.0
5 TraesCS6B01G251700 chr6A 95.779 1753 62 5 923 2668 432539342 432537595 0.000000e+00 2817.0
6 TraesCS6B01G251700 chr6A 94.041 1544 66 22 2704 4234 432534252 432532722 0.000000e+00 2318.0
7 TraesCS6B01G251700 chr6A 87.995 783 66 8 9 770 432766681 432765906 0.000000e+00 900.0
8 TraesCS6B01G251700 chr6A 75.641 312 53 14 327 628 97088103 97088401 2.850000e-27 134.0
9 TraesCS6B01G251700 chr5A 79.497 795 109 35 969 1723 634061206 634061986 2.430000e-142 516.0
10 TraesCS6B01G251700 chr5A 78.649 370 61 10 254 610 598357092 598356728 3.540000e-56 230.0
11 TraesCS6B01G251700 chr5A 93.878 49 3 0 817 865 684706850 684706802 1.750000e-09 75.0
12 TraesCS6B01G251700 chr2B 98.864 264 3 0 4284 4547 752930363 752930626 5.320000e-129 472.0
13 TraesCS6B01G251700 chr2B 98.485 264 4 0 4284 4547 617150011 617149748 2.480000e-127 466.0
14 TraesCS6B01G251700 chr2B 80.687 233 39 6 397 626 49328118 49327889 4.680000e-40 176.0
15 TraesCS6B01G251700 chr5B 98.485 264 4 0 4284 4547 863686 863949 2.480000e-127 466.0
16 TraesCS6B01G251700 chr5B 77.647 510 87 13 129 625 676509211 676508716 7.450000e-73 285.0
17 TraesCS6B01G251700 chr5B 80.697 373 35 17 1383 1723 637126530 637126897 5.840000e-64 255.0
18 TraesCS6B01G251700 chr1B 98.485 264 4 0 4284 4547 61991785 61991522 2.480000e-127 466.0
19 TraesCS6B01G251700 chr1B 98.120 266 4 1 4283 4547 672156870 672156605 3.200000e-126 462.0
20 TraesCS6B01G251700 chr1B 100.000 29 0 0 4231 4259 7867149 7867177 2.000000e-03 54.7
21 TraesCS6B01G251700 chr7B 98.106 264 5 0 4284 4547 6893956 6894219 1.150000e-125 460.0
22 TraesCS6B01G251700 chr7B 98.106 264 5 0 4284 4547 693386195 693386458 1.150000e-125 460.0
23 TraesCS6B01G251700 chr4B 98.106 264 5 0 4284 4547 28265611 28265874 1.150000e-125 460.0
24 TraesCS6B01G251700 chr4B 98.106 264 5 0 4284 4547 479217929 479218192 1.150000e-125 460.0
25 TraesCS6B01G251700 chr4B 77.973 513 96 8 106 604 64076479 64076988 5.710000e-79 305.0
26 TraesCS6B01G251700 chr4B 92.500 40 0 1 4232 4268 193542646 193542607 2.000000e-03 54.7
27 TraesCS6B01G251700 chr1A 86.136 339 31 11 3676 4004 555535881 555536213 7.240000e-93 351.0
28 TraesCS6B01G251700 chr1A 83.000 400 33 16 3618 4004 555535339 555535716 3.390000e-86 329.0
29 TraesCS6B01G251700 chr3B 78.928 541 92 15 106 625 638360439 638360978 9.360000e-92 348.0
30 TraesCS6B01G251700 chr3B 78.937 508 88 11 106 599 71649513 71649011 1.220000e-85 327.0
31 TraesCS6B01G251700 chr3B 85.852 311 30 8 3619 3929 507516683 507516387 7.340000e-83 318.0
32 TraesCS6B01G251700 chr3B 82.071 396 45 19 3619 4002 801299209 801299590 9.500000e-82 315.0
33 TraesCS6B01G251700 chr3B 77.725 422 81 5 217 625 821340462 821340041 3.510000e-61 246.0
34 TraesCS6B01G251700 chr3B 92.500 40 0 1 4232 4268 581347371 581347410 2.000000e-03 54.7
35 TraesCS6B01G251700 chr5D 77.956 499 91 15 142 625 14375475 14374981 1.240000e-75 294.0
36 TraesCS6B01G251700 chr5D 81.375 349 51 9 3619 3958 379088290 379087947 5.800000e-69 272.0
37 TraesCS6B01G251700 chr5D 81.143 350 38 14 1400 1723 506246539 506246886 5.840000e-64 255.0
38 TraesCS6B01G251700 chr2D 77.618 487 98 3 151 627 48132063 48132548 7.450000e-73 285.0
39 TraesCS6B01G251700 chr2D 77.926 376 65 10 3619 3986 26481877 26481512 7.660000e-53 219.0
40 TraesCS6B01G251700 chr3A 83.025 324 41 10 3644 3958 63426455 63426137 9.630000e-72 281.0
41 TraesCS6B01G251700 chr3A 88.889 81 5 4 3936 4013 63844335 63844414 3.740000e-16 97.1
42 TraesCS6B01G251700 chr4D 77.848 474 89 5 150 611 381731449 381731918 3.460000e-71 279.0
43 TraesCS6B01G251700 chr4D 77.426 474 91 5 150 611 381734478 381734947 7.500000e-68 268.0
44 TraesCS6B01G251700 chr2A 79.070 430 73 11 210 625 723059290 723059716 3.460000e-71 279.0
45 TraesCS6B01G251700 chr2A 77.844 167 30 6 129 292 65824893 65824731 3.740000e-16 97.1
46 TraesCS6B01G251700 chr3D 79.404 403 59 17 3623 4007 64836237 64835841 3.490000e-66 263.0
47 TraesCS6B01G251700 chr7A 76.908 498 90 10 149 625 694042246 694042739 4.510000e-65 259.0
48 TraesCS6B01G251700 chr7A 75.826 484 102 8 143 614 710369965 710370445 9.840000e-57 231.0
49 TraesCS6B01G251700 chr1D 92.308 52 4 0 823 874 452896581 452896632 1.750000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G251700 chr6B 451671011 451675557 4546 False 8397.0 8397 100.000 1 4547 1 chr6B.!!$F1 4546
1 TraesCS6B01G251700 chr6D 290899746 290904116 4370 False 1838.0 2833 90.454 1 4234 3 chr6D.!!$F2 4233
2 TraesCS6B01G251700 chr6A 432532722 432539342 6620 True 2567.5 2817 94.910 923 4234 2 chr6A.!!$R2 3311
3 TraesCS6B01G251700 chr6A 432765906 432766681 775 True 900.0 900 87.995 9 770 1 chr6A.!!$R1 761
4 TraesCS6B01G251700 chr5A 634061206 634061986 780 False 516.0 516 79.497 969 1723 1 chr5A.!!$F1 754
5 TraesCS6B01G251700 chr4B 64076479 64076988 509 False 305.0 305 77.973 106 604 1 chr4B.!!$F2 498
6 TraesCS6B01G251700 chr1A 555535339 555536213 874 False 340.0 351 84.568 3618 4004 2 chr1A.!!$F1 386
7 TraesCS6B01G251700 chr3B 638360439 638360978 539 False 348.0 348 78.928 106 625 1 chr3B.!!$F2 519
8 TraesCS6B01G251700 chr3B 71649011 71649513 502 True 327.0 327 78.937 106 599 1 chr3B.!!$R1 493
9 TraesCS6B01G251700 chr4D 381731449 381734947 3498 False 273.5 279 77.637 150 611 2 chr4D.!!$F1 461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 3303 0.874175 CTGTTGTTGTCCTCGTGCGA 60.874 55.0 0.0 0.0 0.00 5.10 F
1732 5096 0.958382 TTGGTATGCTGGTGCCGTTC 60.958 55.0 0.0 0.0 38.71 3.95 F
2566 5937 0.736053 TTCCAAGTGTGTTTCGCCAC 59.264 50.0 0.0 0.0 35.86 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 5715 0.107456 CTTGTGGGAGTGTGTGCTCT 59.893 55.0 0.00 0.00 35.89 4.09 R
3518 10219 0.376152 CTTAGCTGCATCAACGCTGG 59.624 55.0 7.60 0.00 35.33 4.85 R
4243 11476 0.026285 GCACTATAGCGCGGTTGTTG 59.974 55.0 19.09 10.24 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.647797 TTGTTCCCTTTTCTTCTTCTTTTTAAC 57.352 29.630 0.00 0.00 0.00 2.01
41 42 6.219302 TCTTTTTAACGTTTGATCGAGTCC 57.781 37.500 5.91 0.00 34.70 3.85
127 143 2.546584 CCTTGCTGGCAGGAAAGTTTTC 60.547 50.000 21.99 0.00 36.46 2.29
149 166 6.110411 TCTTTTTAGATGTCCCTTCGAGTT 57.890 37.500 0.00 0.00 0.00 3.01
150 167 6.531021 TCTTTTTAGATGTCCCTTCGAGTTT 58.469 36.000 0.00 0.00 0.00 2.66
153 170 5.740290 TTAGATGTCCCTTCGAGTTTTCT 57.260 39.130 0.00 0.00 0.00 2.52
174 3055 2.262423 AGGCTTTGTGTCCTTCTCAC 57.738 50.000 0.00 0.00 36.48 3.51
212 3093 3.390639 ACTGCTCCCTGAAGATGGAATAG 59.609 47.826 0.00 0.00 0.00 1.73
350 3239 2.615447 TGTCTACGTTCGTGTGTCTTCT 59.385 45.455 8.14 0.00 0.00 2.85
352 3241 2.031420 TCTACGTTCGTGTGTCTTCTGG 60.031 50.000 8.14 0.00 0.00 3.86
391 3285 3.072944 ACGCTACTCTTCAACGACTACT 58.927 45.455 0.00 0.00 0.00 2.57
409 3303 0.874175 CTGTTGTTGTCCTCGTGCGA 60.874 55.000 0.00 0.00 0.00 5.10
419 3313 1.202842 TCCTCGTGCGATGGTCCTATA 60.203 52.381 0.00 0.00 0.00 1.31
423 3317 1.611977 CGTGCGATGGTCCTATAAGGA 59.388 52.381 0.00 0.00 43.43 3.36
441 3335 1.197721 GGACTTGGCATGACGACTTTG 59.802 52.381 7.45 0.00 0.00 2.77
460 3695 7.435068 ACTTTGCGACTGTCTATTACAAAAT 57.565 32.000 6.21 0.00 37.74 1.82
492 3727 3.316573 CTGGTGAGGAAGGGGCGAC 62.317 68.421 0.00 0.00 0.00 5.19
540 3784 2.641305 AGTCGTCGCTAGTTGGTCTAT 58.359 47.619 0.00 0.00 0.00 1.98
712 3962 9.683069 ACTCAATTTTTGAAAGTATAGCAAGTG 57.317 29.630 0.00 0.00 39.58 3.16
747 3997 7.602265 GGCAAGCAACTCAATTAAATTAGGAAA 59.398 33.333 0.00 0.00 0.00 3.13
773 4023 6.892310 ACAGAACAAGACAAAAGAAAATGC 57.108 33.333 0.00 0.00 0.00 3.56
774 4024 5.812127 ACAGAACAAGACAAAAGAAAATGCC 59.188 36.000 0.00 0.00 0.00 4.40
775 4025 6.044682 CAGAACAAGACAAAAGAAAATGCCT 58.955 36.000 0.00 0.00 0.00 4.75
776 4026 6.019318 CAGAACAAGACAAAAGAAAATGCCTG 60.019 38.462 0.00 0.00 0.00 4.85
777 4027 4.122046 ACAAGACAAAAGAAAATGCCTGC 58.878 39.130 0.00 0.00 0.00 4.85
778 4028 4.121317 CAAGACAAAAGAAAATGCCTGCA 58.879 39.130 0.00 0.00 0.00 4.41
779 4029 4.612264 AGACAAAAGAAAATGCCTGCAT 57.388 36.364 0.00 0.00 38.46 3.96
780 4030 5.726980 AGACAAAAGAAAATGCCTGCATA 57.273 34.783 4.84 0.00 35.31 3.14
781 4031 6.100404 AGACAAAAGAAAATGCCTGCATAA 57.900 33.333 4.84 0.00 35.31 1.90
782 4032 6.523840 AGACAAAAGAAAATGCCTGCATAAA 58.476 32.000 4.84 0.00 35.31 1.40
783 4033 7.163441 AGACAAAAGAAAATGCCTGCATAAAT 58.837 30.769 4.84 0.00 35.31 1.40
784 4034 8.313292 AGACAAAAGAAAATGCCTGCATAAATA 58.687 29.630 4.84 0.00 35.31 1.40
785 4035 9.101655 GACAAAAGAAAATGCCTGCATAAATAT 57.898 29.630 4.84 0.00 35.31 1.28
786 4036 9.452287 ACAAAAGAAAATGCCTGCATAAATATT 57.548 25.926 4.84 0.00 35.31 1.28
787 4037 9.925268 CAAAAGAAAATGCCTGCATAAATATTC 57.075 29.630 4.84 5.91 35.31 1.75
788 4038 9.669887 AAAAGAAAATGCCTGCATAAATATTCA 57.330 25.926 4.84 0.00 35.31 2.57
789 4039 9.841295 AAAGAAAATGCCTGCATAAATATTCAT 57.159 25.926 4.84 0.00 35.31 2.57
790 4040 8.827177 AGAAAATGCCTGCATAAATATTCATG 57.173 30.769 4.84 0.00 35.31 3.07
791 4041 8.426489 AGAAAATGCCTGCATAAATATTCATGT 58.574 29.630 4.84 0.00 35.31 3.21
792 4042 7.956420 AAATGCCTGCATAAATATTCATGTG 57.044 32.000 4.84 0.00 35.31 3.21
793 4043 6.904463 ATGCCTGCATAAATATTCATGTGA 57.096 33.333 2.09 0.00 34.49 3.58
794 4044 6.712179 TGCCTGCATAAATATTCATGTGAA 57.288 33.333 0.54 0.00 38.56 3.18
795 4045 7.110043 TGCCTGCATAAATATTCATGTGAAA 57.890 32.000 0.54 0.00 37.61 2.69
796 4046 7.728148 TGCCTGCATAAATATTCATGTGAAAT 58.272 30.769 0.54 0.00 37.61 2.17
797 4047 7.868922 TGCCTGCATAAATATTCATGTGAAATC 59.131 33.333 0.54 0.00 37.61 2.17
798 4048 8.086522 GCCTGCATAAATATTCATGTGAAATCT 58.913 33.333 0.54 0.00 37.61 2.40
799 4049 9.976511 CCTGCATAAATATTCATGTGAAATCTT 57.023 29.630 0.54 0.00 37.61 2.40
834 4084 9.618890 ATTGTATGACTTAGATGTGCAATACTT 57.381 29.630 0.00 0.00 0.00 2.24
836 4086 9.750125 TGTATGACTTAGATGTGCAATACTTAG 57.250 33.333 0.00 0.00 0.00 2.18
837 4087 9.197694 GTATGACTTAGATGTGCAATACTTAGG 57.802 37.037 0.00 0.00 0.00 2.69
838 4088 6.582636 TGACTTAGATGTGCAATACTTAGGG 58.417 40.000 0.00 0.00 0.00 3.53
839 4089 6.156256 TGACTTAGATGTGCAATACTTAGGGT 59.844 38.462 0.00 0.00 0.00 4.34
840 4090 7.343574 TGACTTAGATGTGCAATACTTAGGGTA 59.656 37.037 0.00 0.00 34.62 3.69
841 4091 8.263854 ACTTAGATGTGCAATACTTAGGGTAT 57.736 34.615 0.00 0.00 42.38 2.73
842 4092 9.375974 ACTTAGATGTGCAATACTTAGGGTATA 57.624 33.333 0.00 0.00 39.94 1.47
845 4095 8.671987 AGATGTGCAATACTTAGGGTATATCT 57.328 34.615 0.00 0.00 39.94 1.98
846 4096 9.769677 AGATGTGCAATACTTAGGGTATATCTA 57.230 33.333 0.00 0.00 39.94 1.98
848 4098 9.769677 ATGTGCAATACTTAGGGTATATCTAGA 57.230 33.333 0.00 0.00 39.94 2.43
849 4099 9.769677 TGTGCAATACTTAGGGTATATCTAGAT 57.230 33.333 10.73 10.73 39.94 1.98
886 4136 6.667007 ACTGTATTTATAACGGGGTTTTCG 57.333 37.500 0.00 0.00 0.00 3.46
890 4140 6.765036 TGTATTTATAACGGGGTTTTCGCATA 59.235 34.615 0.00 0.00 34.25 3.14
891 4141 5.482686 TTTATAACGGGGTTTTCGCATAC 57.517 39.130 0.00 0.00 34.25 2.39
892 4142 2.469274 TAACGGGGTTTTCGCATACA 57.531 45.000 0.00 0.00 34.25 2.29
898 4148 2.758423 GGGGTTTTCGCATACAAGGATT 59.242 45.455 0.00 0.00 34.25 3.01
900 4150 4.583073 GGGGTTTTCGCATACAAGGATTAT 59.417 41.667 0.00 0.00 34.25 1.28
901 4151 5.507315 GGGGTTTTCGCATACAAGGATTATG 60.507 44.000 0.00 0.00 34.25 1.90
902 4152 5.067283 GGGTTTTCGCATACAAGGATTATGT 59.933 40.000 0.00 0.00 34.81 2.29
903 4153 6.261381 GGGTTTTCGCATACAAGGATTATGTA 59.739 38.462 0.00 0.00 37.64 2.29
904 4154 7.130269 GGTTTTCGCATACAAGGATTATGTAC 58.870 38.462 0.00 0.00 36.19 2.90
910 4160 8.749354 TCGCATACAAGGATTATGTACTATCAT 58.251 33.333 0.00 0.00 36.19 2.45
919 4169 9.736414 AGGATTATGTACTATCATACTACACGT 57.264 33.333 0.00 0.00 31.19 4.49
979 4306 4.492160 GACATCTCGCCGTCGCCA 62.492 66.667 0.00 0.00 35.26 5.69
1021 4348 2.109799 CATCTCCGCCGCCTTCAT 59.890 61.111 0.00 0.00 0.00 2.57
1076 4403 1.138661 GACCATCCTCTTCCTGCTCTG 59.861 57.143 0.00 0.00 0.00 3.35
1182 4512 3.007920 CAGCAGCCTGGAGGAGGT 61.008 66.667 0.00 0.00 44.97 3.85
1220 4559 3.746949 GATGAGCTGGTGGGCGAGG 62.747 68.421 0.00 0.00 37.29 4.63
1519 4859 3.510388 TGCTCAACACGGAGAAGATAG 57.490 47.619 0.00 0.00 37.05 2.08
1723 5087 3.119388 CCCTGTTCAACATTGGTATGCTG 60.119 47.826 0.00 0.00 35.03 4.41
1728 5092 1.135024 CAACATTGGTATGCTGGTGCC 60.135 52.381 0.00 0.00 38.71 5.01
1732 5096 0.958382 TTGGTATGCTGGTGCCGTTC 60.958 55.000 0.00 0.00 38.71 3.95
1743 5107 1.883926 GGTGCCGTTCCATTACAGTTT 59.116 47.619 0.00 0.00 0.00 2.66
1774 5139 9.646427 CCCTAGTGATATTTAGAACTGAATAGC 57.354 37.037 7.37 7.37 30.98 2.97
1792 5157 6.599244 TGAATAGCCATTGGTATGCTAATAGC 59.401 38.462 5.12 5.12 42.82 2.97
1823 5188 1.247567 ATGTTTCCTGTTTCCGCTGG 58.752 50.000 0.00 0.00 0.00 4.85
1839 5204 3.618594 CCGCTGGTATTCATTCATATCCG 59.381 47.826 0.00 0.00 0.00 4.18
1941 5306 5.006261 GGTAGTTTGGTCATTTTTGTGCAAC 59.994 40.000 0.00 0.00 37.35 4.17
1964 5329 9.994432 CAACACCATAGAATGAATCTTAGTTTC 57.006 33.333 0.00 0.00 39.71 2.78
1965 5330 9.739276 AACACCATAGAATGAATCTTAGTTTCA 57.261 29.630 8.00 8.00 39.71 2.69
1966 5331 9.388506 ACACCATAGAATGAATCTTAGTTTCAG 57.611 33.333 10.83 0.11 39.71 3.02
1967 5332 8.341173 CACCATAGAATGAATCTTAGTTTCAGC 58.659 37.037 10.83 6.33 39.71 4.26
1968 5333 8.049117 ACCATAGAATGAATCTTAGTTTCAGCA 58.951 33.333 10.83 0.00 39.71 4.41
1970 5335 9.713740 CATAGAATGAATCTTAGTTTCAGCAAC 57.286 33.333 10.83 3.83 39.71 4.17
1971 5336 7.750229 AGAATGAATCTTAGTTTCAGCAACA 57.250 32.000 10.83 0.00 36.60 3.33
1972 5337 7.588512 AGAATGAATCTTAGTTTCAGCAACAC 58.411 34.615 10.83 1.20 36.60 3.32
1973 5338 5.342806 TGAATCTTAGTTTCAGCAACACG 57.657 39.130 1.97 0.00 37.93 4.49
1997 5364 6.570378 CGTTTATTTGAAATCTTGGCTGACCT 60.570 38.462 0.00 0.00 36.63 3.85
2043 5410 5.065914 ACCCGGTTTAACTAGGAAGAAAAC 58.934 41.667 0.00 0.00 34.36 2.43
2044 5411 4.456911 CCCGGTTTAACTAGGAAGAAAACC 59.543 45.833 0.00 12.80 42.49 3.27
2050 5417 9.511272 GGTTTAACTAGGAAGAAAACCTCAATA 57.489 33.333 14.42 0.00 42.55 1.90
2148 5519 2.832129 TCTTCGAATAGGAGGTTGCACT 59.168 45.455 0.00 0.00 0.00 4.40
2292 5663 1.512996 CTGCTAAGCCGCCATCCATG 61.513 60.000 0.00 0.00 0.00 3.66
2318 5689 4.341487 GGGAAATAAACCCTGTGCTTAGT 58.659 43.478 0.00 0.00 43.65 2.24
2338 5709 5.019785 AGTTAAACTCGTCCATATCCACC 57.980 43.478 0.00 0.00 0.00 4.61
2344 5715 3.008594 ACTCGTCCATATCCACCAACAAA 59.991 43.478 0.00 0.00 0.00 2.83
2476 5847 7.301054 CACAAAAATCTCTCACCACACTAATC 58.699 38.462 0.00 0.00 0.00 1.75
2566 5937 0.736053 TTCCAAGTGTGTTTCGCCAC 59.264 50.000 0.00 0.00 35.86 5.01
2622 5993 5.385198 ACTTTTTGTGAAGGATAGCCTGAA 58.615 37.500 0.00 0.00 46.28 3.02
2694 6065 4.487714 TTGTATGGGTGAAGGAGATGAC 57.512 45.455 0.00 0.00 0.00 3.06
2758 9449 2.026262 GTGGTCTTGAGAATTGGCCCTA 60.026 50.000 0.00 0.00 0.00 3.53
2792 9483 9.928618 TCTTGGGTTTATACATTATGAATTCCA 57.071 29.630 2.27 0.00 0.00 3.53
2853 9544 5.297776 GCTCTTGCACATTGGTTCTATACAT 59.702 40.000 0.00 0.00 39.41 2.29
3157 9856 9.793245 GTTTCTATTATAAATCATTCACCGTCG 57.207 33.333 0.00 0.00 0.00 5.12
3305 10006 5.582950 TTGCCTGCCCTTGTATAGATTAT 57.417 39.130 0.00 0.00 0.00 1.28
3339 10040 1.962807 TGCAAGCACCTAAACAGCATT 59.037 42.857 0.00 0.00 0.00 3.56
3484 10185 1.134098 CACCATATTTCCTCCCGCTGT 60.134 52.381 0.00 0.00 0.00 4.40
3518 10219 5.557891 AACTATGAAGCTGCAGAATTGAC 57.442 39.130 20.43 0.00 0.00 3.18
3543 10244 2.778659 GTTGATGCAGCTAAGCTTTCG 58.221 47.619 3.20 0.00 36.40 3.46
3553 10254 3.118592 AGCTAAGCTTTCGTGATAAGGCT 60.119 43.478 3.20 0.00 42.93 4.58
3561 10262 3.034721 TCGTGATAAGGCTGAAACGTT 57.965 42.857 9.52 0.00 33.07 3.99
3563 10264 3.922240 TCGTGATAAGGCTGAAACGTTAC 59.078 43.478 0.00 0.00 33.07 2.50
3598 10299 6.806751 TCAGTTTTGTATAGCAGGCTAGTAG 58.193 40.000 7.14 0.00 31.45 2.57
3638 10339 3.502211 ACGGATGTGGAGTTTTTAAGCTG 59.498 43.478 0.00 0.00 0.00 4.24
3671 10372 2.070783 TCCCGCGTGAACAGTAAATTC 58.929 47.619 4.92 0.00 0.00 2.17
3675 10376 3.181524 CCGCGTGAACAGTAAATTCGAAT 60.182 43.478 4.39 4.39 0.00 3.34
3676 10377 4.391358 CGCGTGAACAGTAAATTCGAATT 58.609 39.130 17.60 17.60 0.00 2.17
3677 10378 4.843984 CGCGTGAACAGTAAATTCGAATTT 59.156 37.500 32.16 32.16 41.24 1.82
3678 10379 6.010675 CGCGTGAACAGTAAATTCGAATTTA 58.989 36.000 30.31 30.31 39.24 1.40
3752 10464 5.402997 TGGAGTGCATGCAAAAATTCATA 57.597 34.783 24.58 5.88 0.00 2.15
3829 10548 6.202570 TGTTACTTTCAAATGCATTTTGGAGC 59.797 34.615 21.95 11.38 44.07 4.70
3835 10554 4.464951 TCAAATGCATTTTGGAGCTCTGAT 59.535 37.500 21.95 0.00 44.07 2.90
3841 10560 4.387862 GCATTTTGGAGCTCTGATTTTGTG 59.612 41.667 14.64 4.39 0.00 3.33
3863 10582 0.968405 TTTTGCCATGACTTGCTCCC 59.032 50.000 0.00 0.00 0.00 4.30
4050 11279 6.554334 TTTTTGCTTTCTATTAGTCGCAGT 57.446 33.333 0.00 0.00 0.00 4.40
4069 11298 4.216257 GCAGTTGTACACAAATCTGATGGT 59.784 41.667 13.82 0.00 37.63 3.55
4237 11470 9.107177 TCATCTTGATTGAAGATCTTTTAGAGC 57.893 33.333 9.87 0.00 46.84 4.09
4238 11471 8.890718 CATCTTGATTGAAGATCTTTTAGAGCA 58.109 33.333 9.87 0.00 46.84 4.26
4239 11472 9.629878 ATCTTGATTGAAGATCTTTTAGAGCAT 57.370 29.630 9.87 0.00 46.84 3.79
4240 11473 9.107177 TCTTGATTGAAGATCTTTTAGAGCATC 57.893 33.333 9.87 4.85 35.64 3.91
4241 11474 9.111613 CTTGATTGAAGATCTTTTAGAGCATCT 57.888 33.333 9.87 0.00 41.11 2.90
4252 11485 1.796796 GAGCATCTCCAACAACCGC 59.203 57.895 0.00 0.00 0.00 5.68
4253 11486 1.970917 GAGCATCTCCAACAACCGCG 61.971 60.000 0.00 0.00 0.00 6.46
4254 11487 2.480555 CATCTCCAACAACCGCGC 59.519 61.111 0.00 0.00 0.00 6.86
4255 11488 2.034879 CATCTCCAACAACCGCGCT 61.035 57.895 5.56 0.00 0.00 5.92
4256 11489 0.739462 CATCTCCAACAACCGCGCTA 60.739 55.000 5.56 0.00 0.00 4.26
4257 11490 0.178068 ATCTCCAACAACCGCGCTAT 59.822 50.000 5.56 0.00 0.00 2.97
4258 11491 0.818938 TCTCCAACAACCGCGCTATA 59.181 50.000 5.56 0.00 0.00 1.31
4259 11492 1.202371 TCTCCAACAACCGCGCTATAG 60.202 52.381 5.56 0.00 0.00 1.31
4260 11493 0.533491 TCCAACAACCGCGCTATAGT 59.467 50.000 5.56 0.00 0.00 2.12
4261 11494 0.650512 CCAACAACCGCGCTATAGTG 59.349 55.000 5.56 9.02 0.00 2.74
4276 11509 3.163358 GTGCCGCGCGCTAAAAAC 61.163 61.111 30.48 15.70 38.78 2.43
4277 11510 4.392576 TGCCGCGCGCTAAAAACC 62.393 61.111 30.48 9.29 38.78 3.27
4278 11511 4.097863 GCCGCGCGCTAAAAACCT 62.098 61.111 30.48 0.00 0.00 3.50
4279 11512 2.559330 CCGCGCGCTAAAAACCTT 59.441 55.556 30.48 0.00 0.00 3.50
4280 11513 1.081708 CCGCGCGCTAAAAACCTTT 60.082 52.632 30.48 0.00 0.00 3.11
4281 11514 0.662077 CCGCGCGCTAAAAACCTTTT 60.662 50.000 30.48 0.00 0.00 2.27
4282 11515 1.125270 CGCGCGCTAAAAACCTTTTT 58.875 45.000 30.48 1.59 42.51 1.94
4283 11516 1.137019 CGCGCGCTAAAAACCTTTTTG 60.137 47.619 30.48 3.74 40.33 2.44
4284 11517 1.396690 GCGCGCTAAAAACCTTTTTGC 60.397 47.619 26.67 7.83 40.33 3.68
4285 11518 1.137019 CGCGCTAAAAACCTTTTTGCG 60.137 47.619 25.48 25.48 46.91 4.85
4286 11519 2.553536 CGCTAAAAACCTTTTTGCGC 57.446 45.000 21.13 0.00 43.28 6.09
4287 11520 1.137019 CGCTAAAAACCTTTTTGCGCG 60.137 47.619 21.13 18.98 45.29 6.86
4288 11521 1.396690 GCTAAAAACCTTTTTGCGCGC 60.397 47.619 27.26 27.26 40.33 6.86
4289 11522 0.847035 TAAAAACCTTTTTGCGCGCG 59.153 45.000 28.44 28.44 40.33 6.86
4290 11523 2.354763 AAAAACCTTTTTGCGCGCGC 62.355 50.000 45.02 45.02 38.81 6.86
4312 11545 3.043713 CGTTCCAGCAGAGCGCAA 61.044 61.111 11.47 0.00 42.43 4.85
4313 11546 2.606961 CGTTCCAGCAGAGCGCAAA 61.607 57.895 11.47 0.00 42.43 3.68
4314 11547 1.654220 GTTCCAGCAGAGCGCAAAA 59.346 52.632 11.47 0.00 46.13 2.44
4315 11548 0.030638 GTTCCAGCAGAGCGCAAAAA 59.969 50.000 11.47 0.00 46.13 1.94
4316 11549 0.961019 TTCCAGCAGAGCGCAAAAAT 59.039 45.000 11.47 0.00 46.13 1.82
4317 11550 1.819928 TCCAGCAGAGCGCAAAAATA 58.180 45.000 11.47 0.00 46.13 1.40
4318 11551 1.468520 TCCAGCAGAGCGCAAAAATAC 59.531 47.619 11.47 0.00 46.13 1.89
4319 11552 1.199789 CCAGCAGAGCGCAAAAATACA 59.800 47.619 11.47 0.00 46.13 2.29
4320 11553 2.512885 CAGCAGAGCGCAAAAATACAG 58.487 47.619 11.47 0.00 46.13 2.74
4321 11554 1.135575 AGCAGAGCGCAAAAATACAGC 60.136 47.619 11.47 0.00 46.13 4.40
4325 11558 2.979036 CGCAAAAATACAGCGCGC 59.021 55.556 26.66 26.66 45.14 6.86
4326 11559 2.823894 CGCAAAAATACAGCGCGCG 61.824 57.895 28.44 28.44 45.14 6.86
4327 11560 2.979036 CAAAAATACAGCGCGCGC 59.021 55.556 45.10 45.10 42.33 6.86
4344 11577 3.124921 CGACTCGCCGGGCATTTT 61.125 61.111 20.71 0.00 0.00 1.82
4345 11578 2.485122 GACTCGCCGGGCATTTTG 59.515 61.111 20.71 1.74 0.00 2.44
4346 11579 3.683587 GACTCGCCGGGCATTTTGC 62.684 63.158 20.71 0.00 44.08 3.68
4396 11629 8.763049 TGAACATGTAAAATTTGACACAAACA 57.237 26.923 10.69 6.88 0.00 2.83
4397 11630 9.208022 TGAACATGTAAAATTTGACACAAACAA 57.792 25.926 10.69 0.00 0.00 2.83
4398 11631 9.687717 GAACATGTAAAATTTGACACAAACAAG 57.312 29.630 10.69 0.00 0.00 3.16
4399 11632 8.770438 ACATGTAAAATTTGACACAAACAAGT 57.230 26.923 10.69 0.00 0.00 3.16
4400 11633 9.213799 ACATGTAAAATTTGACACAAACAAGTT 57.786 25.926 10.69 0.00 0.00 2.66
4401 11634 9.475505 CATGTAAAATTTGACACAAACAAGTTG 57.524 29.630 10.69 0.00 43.43 3.16
4402 11635 8.818141 TGTAAAATTTGACACAAACAAGTTGA 57.182 26.923 10.54 0.00 39.87 3.18
4403 11636 9.429359 TGTAAAATTTGACACAAACAAGTTGAT 57.571 25.926 10.54 0.00 39.87 2.57
4404 11637 9.687717 GTAAAATTTGACACAAACAAGTTGATG 57.312 29.630 10.54 10.51 39.87 3.07
4405 11638 8.545229 AAAATTTGACACAAACAAGTTGATGA 57.455 26.923 10.54 0.00 39.87 2.92
4406 11639 8.545229 AAATTTGACACAAACAAGTTGATGAA 57.455 26.923 10.54 0.00 39.87 2.57
4407 11640 8.721019 AATTTGACACAAACAAGTTGATGAAT 57.279 26.923 10.54 2.53 39.87 2.57
4408 11641 9.814899 AATTTGACACAAACAAGTTGATGAATA 57.185 25.926 10.54 0.00 39.87 1.75
4409 11642 9.814899 ATTTGACACAAACAAGTTGATGAATAA 57.185 25.926 10.54 2.64 39.87 1.40
4410 11643 9.645059 TTTGACACAAACAAGTTGATGAATAAA 57.355 25.926 10.54 7.49 39.87 1.40
4411 11644 9.645059 TTGACACAAACAAGTTGATGAATAAAA 57.355 25.926 10.54 1.09 39.87 1.52
4412 11645 9.645059 TGACACAAACAAGTTGATGAATAAAAA 57.355 25.926 10.54 0.00 39.87 1.94
4426 11659 7.852971 ATGAATAAAAATTCATGCCCACAAG 57.147 32.000 11.71 0.00 46.21 3.16
4427 11660 6.767456 TGAATAAAAATTCATGCCCACAAGT 58.233 32.000 0.00 0.00 35.80 3.16
4428 11661 7.222872 TGAATAAAAATTCATGCCCACAAGTT 58.777 30.769 0.00 0.00 35.80 2.66
4429 11662 7.387397 TGAATAAAAATTCATGCCCACAAGTTC 59.613 33.333 0.00 0.00 35.80 3.01
4430 11663 4.686191 AAAATTCATGCCCACAAGTTCA 57.314 36.364 0.00 0.00 0.00 3.18
4431 11664 4.895668 AAATTCATGCCCACAAGTTCAT 57.104 36.364 0.00 0.00 0.00 2.57
4432 11665 4.460948 AATTCATGCCCACAAGTTCATC 57.539 40.909 0.00 0.00 0.00 2.92
4433 11666 2.583024 TCATGCCCACAAGTTCATCA 57.417 45.000 0.00 0.00 0.00 3.07
4434 11667 2.874014 TCATGCCCACAAGTTCATCAA 58.126 42.857 0.00 0.00 0.00 2.57
4435 11668 3.229293 TCATGCCCACAAGTTCATCAAA 58.771 40.909 0.00 0.00 0.00 2.69
4436 11669 3.640498 TCATGCCCACAAGTTCATCAAAA 59.360 39.130 0.00 0.00 0.00 2.44
4437 11670 4.283978 TCATGCCCACAAGTTCATCAAAAT 59.716 37.500 0.00 0.00 0.00 1.82
4438 11671 4.255833 TGCCCACAAGTTCATCAAAATC 57.744 40.909 0.00 0.00 0.00 2.17
4439 11672 3.640498 TGCCCACAAGTTCATCAAAATCA 59.360 39.130 0.00 0.00 0.00 2.57
4440 11673 4.283978 TGCCCACAAGTTCATCAAAATCAT 59.716 37.500 0.00 0.00 0.00 2.45
4441 11674 4.628333 GCCCACAAGTTCATCAAAATCATG 59.372 41.667 0.00 0.00 0.00 3.07
4442 11675 4.628333 CCCACAAGTTCATCAAAATCATGC 59.372 41.667 0.00 0.00 0.00 4.06
4443 11676 4.628333 CCACAAGTTCATCAAAATCATGCC 59.372 41.667 0.00 0.00 0.00 4.40
4444 11677 4.628333 CACAAGTTCATCAAAATCATGCCC 59.372 41.667 0.00 0.00 0.00 5.36
4445 11678 4.283978 ACAAGTTCATCAAAATCATGCCCA 59.716 37.500 0.00 0.00 0.00 5.36
4446 11679 4.460948 AGTTCATCAAAATCATGCCCAC 57.539 40.909 0.00 0.00 0.00 4.61
4447 11680 3.833650 AGTTCATCAAAATCATGCCCACA 59.166 39.130 0.00 0.00 0.00 4.17
4448 11681 4.283978 AGTTCATCAAAATCATGCCCACAA 59.716 37.500 0.00 0.00 0.00 3.33
4449 11682 4.459390 TCATCAAAATCATGCCCACAAG 57.541 40.909 0.00 0.00 0.00 3.16
4450 11683 3.833650 TCATCAAAATCATGCCCACAAGT 59.166 39.130 0.00 0.00 0.00 3.16
4451 11684 4.283978 TCATCAAAATCATGCCCACAAGTT 59.716 37.500 0.00 0.00 0.00 2.66
4452 11685 4.255833 TCAAAATCATGCCCACAAGTTC 57.744 40.909 0.00 0.00 0.00 3.01
4453 11686 3.640498 TCAAAATCATGCCCACAAGTTCA 59.360 39.130 0.00 0.00 0.00 3.18
4454 11687 4.283978 TCAAAATCATGCCCACAAGTTCAT 59.716 37.500 0.00 0.00 0.00 2.57
4455 11688 4.460948 AAATCATGCCCACAAGTTCATC 57.539 40.909 0.00 0.00 0.00 2.92
4456 11689 1.838112 TCATGCCCACAAGTTCATCC 58.162 50.000 0.00 0.00 0.00 3.51
4457 11690 1.075212 TCATGCCCACAAGTTCATCCA 59.925 47.619 0.00 0.00 0.00 3.41
4458 11691 1.894466 CATGCCCACAAGTTCATCCAA 59.106 47.619 0.00 0.00 0.00 3.53
4459 11692 1.327303 TGCCCACAAGTTCATCCAAC 58.673 50.000 0.00 0.00 34.86 3.77
4460 11693 0.603065 GCCCACAAGTTCATCCAACC 59.397 55.000 0.00 0.00 35.28 3.77
4461 11694 1.993956 CCCACAAGTTCATCCAACCA 58.006 50.000 0.00 0.00 35.28 3.67
4462 11695 2.315176 CCCACAAGTTCATCCAACCAA 58.685 47.619 0.00 0.00 35.28 3.67
4463 11696 2.297033 CCCACAAGTTCATCCAACCAAG 59.703 50.000 0.00 0.00 35.28 3.61
4464 11697 2.958355 CCACAAGTTCATCCAACCAAGT 59.042 45.455 0.00 0.00 35.28 3.16
4465 11698 3.384467 CCACAAGTTCATCCAACCAAGTT 59.616 43.478 0.00 0.00 35.28 2.66
4466 11699 4.499696 CCACAAGTTCATCCAACCAAGTTC 60.500 45.833 0.00 0.00 35.28 3.01
4467 11700 4.097741 CACAAGTTCATCCAACCAAGTTCA 59.902 41.667 0.00 0.00 35.28 3.18
4468 11701 4.709397 ACAAGTTCATCCAACCAAGTTCAA 59.291 37.500 0.00 0.00 35.28 2.69
4469 11702 5.186797 ACAAGTTCATCCAACCAAGTTCAAA 59.813 36.000 0.00 0.00 35.28 2.69
4470 11703 6.127083 ACAAGTTCATCCAACCAAGTTCAAAT 60.127 34.615 0.00 0.00 35.28 2.32
4471 11704 5.846203 AGTTCATCCAACCAAGTTCAAATG 58.154 37.500 0.00 0.00 35.28 2.32
4472 11705 4.255833 TCATCCAACCAAGTTCAAATGC 57.744 40.909 0.00 0.00 0.00 3.56
4473 11706 3.640498 TCATCCAACCAAGTTCAAATGCA 59.360 39.130 0.00 0.00 0.00 3.96
4474 11707 4.100653 TCATCCAACCAAGTTCAAATGCAA 59.899 37.500 0.00 0.00 0.00 4.08
4475 11708 4.478206 TCCAACCAAGTTCAAATGCAAA 57.522 36.364 0.00 0.00 0.00 3.68
4476 11709 4.187694 TCCAACCAAGTTCAAATGCAAAC 58.812 39.130 0.00 0.00 0.00 2.93
4477 11710 4.081198 TCCAACCAAGTTCAAATGCAAACT 60.081 37.500 0.00 0.00 37.32 2.66
4478 11711 5.127845 TCCAACCAAGTTCAAATGCAAACTA 59.872 36.000 2.05 0.00 34.71 2.24
4479 11712 5.814705 CCAACCAAGTTCAAATGCAAACTAA 59.185 36.000 2.05 0.00 34.71 2.24
4480 11713 6.314896 CCAACCAAGTTCAAATGCAAACTAAA 59.685 34.615 2.05 0.00 34.71 1.85
4481 11714 7.148340 CCAACCAAGTTCAAATGCAAACTAAAA 60.148 33.333 2.05 0.00 34.71 1.52
4482 11715 7.538303 ACCAAGTTCAAATGCAAACTAAAAG 57.462 32.000 2.05 0.00 34.71 2.27
4483 11716 7.102993 ACCAAGTTCAAATGCAAACTAAAAGT 58.897 30.769 2.05 0.00 34.71 2.66
4484 11717 7.606073 ACCAAGTTCAAATGCAAACTAAAAGTT 59.394 29.630 2.05 0.00 40.80 2.66
4485 11718 8.116136 CCAAGTTCAAATGCAAACTAAAAGTTC 58.884 33.333 2.05 0.00 37.47 3.01
4486 11719 8.655092 CAAGTTCAAATGCAAACTAAAAGTTCA 58.345 29.630 2.05 0.00 37.47 3.18
4487 11720 8.770438 AGTTCAAATGCAAACTAAAAGTTCAA 57.230 26.923 0.00 0.00 37.47 2.69
4488 11721 8.872845 AGTTCAAATGCAAACTAAAAGTTCAAG 58.127 29.630 0.00 0.00 37.47 3.02
4489 11722 8.868916 GTTCAAATGCAAACTAAAAGTTCAAGA 58.131 29.630 0.00 0.00 37.47 3.02
4490 11723 8.406172 TCAAATGCAAACTAAAAGTTCAAGAC 57.594 30.769 0.00 0.00 37.47 3.01
4491 11724 8.031864 TCAAATGCAAACTAAAAGTTCAAGACA 58.968 29.630 0.00 0.00 37.47 3.41
4492 11725 8.819974 CAAATGCAAACTAAAAGTTCAAGACAT 58.180 29.630 0.00 0.00 37.47 3.06
4493 11726 7.935338 ATGCAAACTAAAAGTTCAAGACATG 57.065 32.000 0.00 0.00 37.47 3.21
4494 11727 7.094508 TGCAAACTAAAAGTTCAAGACATGA 57.905 32.000 0.00 0.00 37.47 3.07
4495 11728 7.542890 TGCAAACTAAAAGTTCAAGACATGAA 58.457 30.769 0.00 0.00 45.71 2.57
4506 11739 6.940831 TTCAAGACATGAAAGACACATCAA 57.059 33.333 0.00 0.00 44.94 2.57
4507 11740 6.549912 TCAAGACATGAAAGACACATCAAG 57.450 37.500 0.00 0.00 34.30 3.02
4508 11741 5.049198 TCAAGACATGAAAGACACATCAAGC 60.049 40.000 0.00 0.00 34.30 4.01
4509 11742 3.755378 AGACATGAAAGACACATCAAGCC 59.245 43.478 0.00 0.00 0.00 4.35
4510 11743 3.755378 GACATGAAAGACACATCAAGCCT 59.245 43.478 0.00 0.00 0.00 4.58
4511 11744 3.755378 ACATGAAAGACACATCAAGCCTC 59.245 43.478 0.00 0.00 0.00 4.70
4512 11745 3.490439 TGAAAGACACATCAAGCCTCA 57.510 42.857 0.00 0.00 0.00 3.86
4513 11746 4.025040 TGAAAGACACATCAAGCCTCAT 57.975 40.909 0.00 0.00 0.00 2.90
4514 11747 4.005650 TGAAAGACACATCAAGCCTCATC 58.994 43.478 0.00 0.00 0.00 2.92
4515 11748 3.996921 AAGACACATCAAGCCTCATCT 57.003 42.857 0.00 0.00 0.00 2.90
4516 11749 3.996921 AGACACATCAAGCCTCATCTT 57.003 42.857 0.00 0.00 0.00 2.40
4517 11750 3.871485 AGACACATCAAGCCTCATCTTC 58.129 45.455 0.00 0.00 0.00 2.87
4518 11751 3.262660 AGACACATCAAGCCTCATCTTCA 59.737 43.478 0.00 0.00 0.00 3.02
4519 11752 4.080469 AGACACATCAAGCCTCATCTTCAT 60.080 41.667 0.00 0.00 0.00 2.57
4520 11753 4.197750 ACACATCAAGCCTCATCTTCATC 58.802 43.478 0.00 0.00 0.00 2.92
4521 11754 4.080469 ACACATCAAGCCTCATCTTCATCT 60.080 41.667 0.00 0.00 0.00 2.90
4522 11755 4.882427 CACATCAAGCCTCATCTTCATCTT 59.118 41.667 0.00 0.00 0.00 2.40
4523 11756 5.007823 CACATCAAGCCTCATCTTCATCTTC 59.992 44.000 0.00 0.00 0.00 2.87
4524 11757 4.148128 TCAAGCCTCATCTTCATCTTCC 57.852 45.455 0.00 0.00 0.00 3.46
4525 11758 3.779183 TCAAGCCTCATCTTCATCTTCCT 59.221 43.478 0.00 0.00 0.00 3.36
4526 11759 4.128643 CAAGCCTCATCTTCATCTTCCTC 58.871 47.826 0.00 0.00 0.00 3.71
4527 11760 3.656496 AGCCTCATCTTCATCTTCCTCT 58.344 45.455 0.00 0.00 0.00 3.69
4528 11761 4.039339 AGCCTCATCTTCATCTTCCTCTT 58.961 43.478 0.00 0.00 0.00 2.85
4529 11762 4.101430 AGCCTCATCTTCATCTTCCTCTTC 59.899 45.833 0.00 0.00 0.00 2.87
4530 11763 4.101430 GCCTCATCTTCATCTTCCTCTTCT 59.899 45.833 0.00 0.00 0.00 2.85
4531 11764 5.396660 GCCTCATCTTCATCTTCCTCTTCTT 60.397 44.000 0.00 0.00 0.00 2.52
4532 11765 6.282930 CCTCATCTTCATCTTCCTCTTCTTC 58.717 44.000 0.00 0.00 0.00 2.87
4533 11766 5.900425 TCATCTTCATCTTCCTCTTCTTCG 58.100 41.667 0.00 0.00 0.00 3.79
4534 11767 5.420421 TCATCTTCATCTTCCTCTTCTTCGT 59.580 40.000 0.00 0.00 0.00 3.85
4535 11768 5.317733 TCTTCATCTTCCTCTTCTTCGTC 57.682 43.478 0.00 0.00 0.00 4.20
4536 11769 5.013547 TCTTCATCTTCCTCTTCTTCGTCT 58.986 41.667 0.00 0.00 0.00 4.18
4537 11770 5.478679 TCTTCATCTTCCTCTTCTTCGTCTT 59.521 40.000 0.00 0.00 0.00 3.01
4538 11771 5.317733 TCATCTTCCTCTTCTTCGTCTTC 57.682 43.478 0.00 0.00 0.00 2.87
4539 11772 3.833545 TCTTCCTCTTCTTCGTCTTCG 57.166 47.619 0.00 0.00 38.55 3.79
4540 11773 3.147629 TCTTCCTCTTCTTCGTCTTCGT 58.852 45.455 0.00 0.00 38.33 3.85
4541 11774 3.188873 TCTTCCTCTTCTTCGTCTTCGTC 59.811 47.826 0.00 0.00 38.33 4.20
4542 11775 1.811359 TCCTCTTCTTCGTCTTCGTCC 59.189 52.381 0.00 0.00 38.33 4.79
4543 11776 1.813786 CCTCTTCTTCGTCTTCGTCCT 59.186 52.381 0.00 0.00 38.33 3.85
4544 11777 2.159490 CCTCTTCTTCGTCTTCGTCCTC 60.159 54.545 0.00 0.00 38.33 3.71
4545 11778 2.484651 CTCTTCTTCGTCTTCGTCCTCA 59.515 50.000 0.00 0.00 38.33 3.86
4546 11779 3.082548 TCTTCTTCGTCTTCGTCCTCAT 58.917 45.455 0.00 0.00 38.33 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.790825 GGACTCGATCAAACGTTAAAAAGAAG 59.209 38.462 0.00 0.00 34.70 2.85
18 19 5.178067 GGGACTCGATCAAACGTTAAAAAGA 59.822 40.000 0.00 0.00 34.70 2.52
19 20 5.178809 AGGGACTCGATCAAACGTTAAAAAG 59.821 40.000 0.00 0.00 34.70 2.27
73 74 1.207089 CTATGGCCACCGAAGACAAGA 59.793 52.381 8.16 0.00 0.00 3.02
76 77 1.622607 CCCTATGGCCACCGAAGACA 61.623 60.000 8.16 0.00 0.00 3.41
127 143 6.803154 AAACTCGAAGGGACATCTAAAAAG 57.197 37.500 0.00 0.00 0.00 2.27
139 155 3.336138 AGCCTAAGAAAACTCGAAGGG 57.664 47.619 0.00 0.00 0.00 3.95
149 166 5.048846 AGAAGGACACAAAGCCTAAGAAA 57.951 39.130 0.00 0.00 33.20 2.52
150 167 4.102524 TGAGAAGGACACAAAGCCTAAGAA 59.897 41.667 0.00 0.00 33.20 2.52
153 170 3.740115 GTGAGAAGGACACAAAGCCTAA 58.260 45.455 0.00 0.00 38.05 2.69
174 3055 2.115595 GCAGTCGTCATCTCATCTTCG 58.884 52.381 0.00 0.00 0.00 3.79
391 3285 0.249699 ATCGCACGAGGACAACAACA 60.250 50.000 0.00 0.00 0.00 3.33
419 3313 0.687354 AGTCGTCATGCCAAGTCCTT 59.313 50.000 0.00 0.00 0.00 3.36
423 3317 0.593128 GCAAAGTCGTCATGCCAAGT 59.407 50.000 0.00 0.00 34.03 3.16
427 3321 1.132640 GTCGCAAAGTCGTCATGCC 59.867 57.895 5.25 0.00 36.75 4.40
441 3335 7.928402 CAAAACATTTTGTAATAGACAGTCGC 58.072 34.615 8.62 0.00 41.87 5.19
460 3695 3.432186 CCTCACCAGAGACAGACAAAACA 60.432 47.826 0.00 0.00 44.98 2.83
471 3706 1.613630 GCCCCTTCCTCACCAGAGA 60.614 63.158 0.00 0.00 44.98 3.10
625 3874 5.968254 TGCACATATAAGTGAACCTCGTAA 58.032 37.500 12.15 0.00 42.05 3.18
627 3876 4.465632 TGCACATATAAGTGAACCTCGT 57.534 40.909 12.15 0.00 42.05 4.18
628 3877 5.991328 ATTGCACATATAAGTGAACCTCG 57.009 39.130 12.15 0.00 42.05 4.63
629 3878 8.338259 CAAGTATTGCACATATAAGTGAACCTC 58.662 37.037 12.15 0.00 40.39 3.85
711 3961 2.554032 GAGTTGCTTGCCTTCTTTAGCA 59.446 45.455 0.00 0.00 41.51 3.49
712 3962 2.554032 TGAGTTGCTTGCCTTCTTTAGC 59.446 45.455 0.00 0.00 0.00 3.09
747 3997 8.229811 GCATTTTCTTTTGTCTTGTTCTGTTTT 58.770 29.630 0.00 0.00 0.00 2.43
756 4006 4.121317 TGCAGGCATTTTCTTTTGTCTTG 58.879 39.130 0.00 0.00 0.00 3.02
771 4021 6.712179 TTCACATGAATATTTATGCAGGCA 57.288 33.333 17.60 0.00 0.00 4.75
772 4022 8.086522 AGATTTCACATGAATATTTATGCAGGC 58.913 33.333 17.60 5.57 33.54 4.85
773 4023 9.976511 AAGATTTCACATGAATATTTATGCAGG 57.023 29.630 17.60 9.49 33.54 4.85
808 4058 9.618890 AAGTATTGCACATCTAAGTCATACAAT 57.381 29.630 0.00 0.00 0.00 2.71
810 4060 9.750125 CTAAGTATTGCACATCTAAGTCATACA 57.250 33.333 0.00 0.00 0.00 2.29
811 4061 9.197694 CCTAAGTATTGCACATCTAAGTCATAC 57.802 37.037 0.00 0.00 0.00 2.39
812 4062 8.367911 CCCTAAGTATTGCACATCTAAGTCATA 58.632 37.037 0.00 0.00 0.00 2.15
813 4063 7.147479 ACCCTAAGTATTGCACATCTAAGTCAT 60.147 37.037 0.00 0.00 0.00 3.06
814 4064 6.156256 ACCCTAAGTATTGCACATCTAAGTCA 59.844 38.462 0.00 0.00 0.00 3.41
815 4065 6.583562 ACCCTAAGTATTGCACATCTAAGTC 58.416 40.000 0.00 0.00 0.00 3.01
816 4066 6.561519 ACCCTAAGTATTGCACATCTAAGT 57.438 37.500 0.00 0.00 0.00 2.24
819 4069 9.769677 AGATATACCCTAAGTATTGCACATCTA 57.230 33.333 0.00 0.00 41.97 1.98
820 4070 8.671987 AGATATACCCTAAGTATTGCACATCT 57.328 34.615 0.00 0.00 41.97 2.90
822 4072 9.769677 TCTAGATATACCCTAAGTATTGCACAT 57.230 33.333 0.00 0.00 41.97 3.21
823 4073 9.769677 ATCTAGATATACCCTAAGTATTGCACA 57.230 33.333 2.53 0.00 41.97 4.57
857 4107 9.519191 AAACCCCGTTATAAATACAGTTTTACT 57.481 29.630 0.00 0.00 0.00 2.24
860 4110 8.022550 CGAAAACCCCGTTATAAATACAGTTTT 58.977 33.333 11.39 11.39 37.54 2.43
861 4111 7.529158 CGAAAACCCCGTTATAAATACAGTTT 58.471 34.615 0.00 0.00 0.00 2.66
862 4112 6.403527 GCGAAAACCCCGTTATAAATACAGTT 60.404 38.462 0.00 0.00 0.00 3.16
863 4113 5.065090 GCGAAAACCCCGTTATAAATACAGT 59.935 40.000 0.00 0.00 0.00 3.55
864 4114 5.064962 TGCGAAAACCCCGTTATAAATACAG 59.935 40.000 0.00 0.00 0.00 2.74
865 4115 4.940046 TGCGAAAACCCCGTTATAAATACA 59.060 37.500 0.00 0.00 0.00 2.29
866 4116 5.482686 TGCGAAAACCCCGTTATAAATAC 57.517 39.130 0.00 0.00 0.00 1.89
867 4117 6.765036 TGTATGCGAAAACCCCGTTATAAATA 59.235 34.615 0.00 0.00 0.00 1.40
868 4118 5.589452 TGTATGCGAAAACCCCGTTATAAAT 59.411 36.000 0.00 0.00 0.00 1.40
869 4119 4.940046 TGTATGCGAAAACCCCGTTATAAA 59.060 37.500 0.00 0.00 0.00 1.40
870 4120 4.511527 TGTATGCGAAAACCCCGTTATAA 58.488 39.130 0.00 0.00 0.00 0.98
871 4121 4.134379 TGTATGCGAAAACCCCGTTATA 57.866 40.909 0.00 0.00 0.00 0.98
872 4122 2.988570 TGTATGCGAAAACCCCGTTAT 58.011 42.857 0.00 0.00 0.00 1.89
873 4123 2.469274 TGTATGCGAAAACCCCGTTA 57.531 45.000 0.00 0.00 0.00 3.18
874 4124 1.538075 CTTGTATGCGAAAACCCCGTT 59.462 47.619 0.00 0.00 0.00 4.44
875 4125 1.161843 CTTGTATGCGAAAACCCCGT 58.838 50.000 0.00 0.00 0.00 5.28
876 4126 0.450184 CCTTGTATGCGAAAACCCCG 59.550 55.000 0.00 0.00 0.00 5.73
877 4127 1.828979 TCCTTGTATGCGAAAACCCC 58.171 50.000 0.00 0.00 0.00 4.95
878 4128 5.067283 ACATAATCCTTGTATGCGAAAACCC 59.933 40.000 0.00 0.00 33.07 4.11
879 4129 6.131544 ACATAATCCTTGTATGCGAAAACC 57.868 37.500 0.00 0.00 33.07 3.27
880 4130 7.916552 AGTACATAATCCTTGTATGCGAAAAC 58.083 34.615 0.00 0.00 33.07 2.43
885 4135 8.932945 ATGATAGTACATAATCCTTGTATGCG 57.067 34.615 0.00 0.00 33.07 4.73
1021 4348 1.300931 GGCGGCATAGCGATGAGAA 60.301 57.895 11.36 0.00 38.18 2.87
1182 4512 3.458163 CGACGCTAAGGGCCCTGA 61.458 66.667 29.50 19.35 37.74 3.86
1347 4686 9.421399 TGAAAAAGGTTCCTTATCTTCTTCTTT 57.579 29.630 4.43 0.00 0.00 2.52
1519 4859 1.268079 GGTGCTCTCAGCCTTGAAAAC 59.732 52.381 0.00 0.00 41.51 2.43
1723 5087 1.530323 AACTGTAATGGAACGGCACC 58.470 50.000 0.00 0.00 0.00 5.01
1728 5092 6.753107 AGGGAAATAAACTGTAATGGAACG 57.247 37.500 0.00 0.00 0.00 3.95
1732 5096 8.980481 ATCACTAGGGAAATAAACTGTAATGG 57.020 34.615 0.00 0.00 0.00 3.16
1761 5126 5.997746 GCATACCAATGGCTATTCAGTTCTA 59.002 40.000 0.00 0.00 33.38 2.10
1917 5282 4.688021 TGCACAAAAATGACCAAACTACC 58.312 39.130 0.00 0.00 0.00 3.18
1941 5306 8.341173 GCTGAAACTAAGATTCATTCTATGGTG 58.659 37.037 0.00 0.00 36.30 4.17
1942 5307 8.049117 TGCTGAAACTAAGATTCATTCTATGGT 58.951 33.333 0.00 0.00 36.30 3.55
1964 5329 6.991485 AGATTTCAAATAAACGTGTTGCTG 57.009 33.333 0.00 0.00 0.00 4.41
1965 5330 6.420604 CCAAGATTTCAAATAAACGTGTTGCT 59.579 34.615 0.00 0.00 0.00 3.91
1966 5331 6.580476 CCAAGATTTCAAATAAACGTGTTGC 58.420 36.000 0.00 0.00 0.00 4.17
1967 5332 6.420604 AGCCAAGATTTCAAATAAACGTGTTG 59.579 34.615 0.00 0.00 0.00 3.33
1968 5333 6.420604 CAGCCAAGATTTCAAATAAACGTGTT 59.579 34.615 0.00 0.00 0.00 3.32
1970 5335 6.088085 GTCAGCCAAGATTTCAAATAAACGTG 59.912 38.462 0.00 0.00 0.00 4.49
1971 5336 6.149633 GTCAGCCAAGATTTCAAATAAACGT 58.850 36.000 0.00 0.00 0.00 3.99
1972 5337 5.572896 GGTCAGCCAAGATTTCAAATAAACG 59.427 40.000 0.00 0.00 34.09 3.60
1973 5338 6.691508 AGGTCAGCCAAGATTTCAAATAAAC 58.308 36.000 0.00 0.00 37.19 2.01
1997 5364 7.523052 GGGTAACAAACATTGAGCAATGAGTAA 60.523 37.037 25.20 6.84 44.67 2.24
2043 5410 9.046296 CACTTATTAAGCCTGTTAGTATTGAGG 57.954 37.037 3.28 0.00 0.00 3.86
2044 5411 8.552034 GCACTTATTAAGCCTGTTAGTATTGAG 58.448 37.037 3.28 0.00 0.00 3.02
2050 5417 6.472887 TCAAGCACTTATTAAGCCTGTTAGT 58.527 36.000 3.28 0.00 0.00 2.24
2122 5489 3.399952 ACCTCCTATTCGAAGAAGGGA 57.600 47.619 22.59 13.15 45.90 4.20
2292 5663 2.028476 GCACAGGGTTTATTTCCCCAAC 60.028 50.000 0.00 0.00 45.64 3.77
2318 5689 5.180271 GTTGGTGGATATGGACGAGTTTAA 58.820 41.667 0.00 0.00 0.00 1.52
2338 5709 1.334869 GGGAGTGTGTGCTCTTTGTTG 59.665 52.381 0.00 0.00 35.89 3.33
2344 5715 0.107456 CTTGTGGGAGTGTGTGCTCT 59.893 55.000 0.00 0.00 35.89 4.09
2434 5805 0.746659 GTGGCTTTGAACCTTGTGCT 59.253 50.000 0.00 0.00 0.00 4.40
2476 5847 1.243342 TTCACATGCCCCTTTGCTCG 61.243 55.000 0.00 0.00 0.00 5.03
2537 5908 1.351017 CACACTTGGAAGGGAGGCTAA 59.649 52.381 0.00 0.00 32.48 3.09
2539 5910 1.062488 ACACACTTGGAAGGGAGGCT 61.062 55.000 0.00 0.00 32.48 4.58
2591 5962 4.016444 TCCTTCACAAAAAGTCTGTGCTT 58.984 39.130 0.00 0.00 43.20 3.91
2694 6065 1.220206 CAGTGACCTAGGCTGCAGG 59.780 63.158 17.12 2.88 39.25 4.85
2792 9483 4.464008 TCCAACTGAGAATTGCTTCTGTT 58.536 39.130 0.00 0.00 41.87 3.16
2853 9544 6.383147 ACCTAAATCGAAGATTCCAAGGTCTA 59.617 38.462 13.80 0.00 45.12 2.59
3157 9856 7.596749 TTCTAAATTCCTTTCGTGAGATGAC 57.403 36.000 0.00 0.00 41.60 3.06
3267 9967 0.750850 GCAATGATGGCCAAGAGCAT 59.249 50.000 10.96 8.79 46.50 3.79
3305 10006 5.887598 AGGTGCTTGCATCAAACTATCAATA 59.112 36.000 8.65 0.00 0.00 1.90
3339 10040 7.663493 TGGAAATCACACACATTGTATTAGACA 59.337 33.333 0.00 0.00 35.67 3.41
3484 10185 6.757010 GCAGCTTCATAGTTAAGTAGCTTGTA 59.243 38.462 3.06 0.00 36.88 2.41
3518 10219 0.376152 CTTAGCTGCATCAACGCTGG 59.624 55.000 7.60 0.00 35.33 4.85
3543 10244 4.251268 AGGTAACGTTTCAGCCTTATCAC 58.749 43.478 5.91 0.00 46.39 3.06
3553 10254 6.932400 ACTGAACATTCATAGGTAACGTTTCA 59.068 34.615 5.91 0.00 38.04 2.69
3563 10264 8.892723 TGCTATACAAAACTGAACATTCATAGG 58.107 33.333 0.00 0.00 36.46 2.57
3598 10299 5.611796 TCCGTACATGTACCGATGTATAC 57.388 43.478 26.37 4.40 40.18 1.47
3700 10412 9.836864 ATTCTTTAAAGTTTGCCAGAAAAAGAT 57.163 25.926 14.74 0.00 33.24 2.40
3702 10414 8.882736 ACATTCTTTAAAGTTTGCCAGAAAAAG 58.117 29.630 14.74 0.00 0.00 2.27
3708 10420 6.760770 TCCAAACATTCTTTAAAGTTTGCCAG 59.239 34.615 18.41 10.08 45.90 4.85
3752 10464 4.128643 CCTTGCACCAATGTGATTTTGTT 58.871 39.130 0.00 0.00 45.76 2.83
3765 10477 0.752009 TTTTACCACGCCTTGCACCA 60.752 50.000 0.00 0.00 0.00 4.17
3863 10582 6.951530 GCAAATTTTCATCACGAAATCACATG 59.048 34.615 0.00 0.00 43.12 3.21
3986 11214 6.235231 TGGCGAAAGTATCCTTCTAATCTT 57.765 37.500 0.00 0.00 0.00 2.40
4005 11233 6.927294 AATATAGAAAGAAGAAGGTTGGCG 57.073 37.500 0.00 0.00 0.00 5.69
4050 11279 5.106197 GCATCACCATCAGATTTGTGTACAA 60.106 40.000 0.00 0.00 0.00 2.41
4069 11298 1.208052 GCTGAACTCTAGGGTGCATCA 59.792 52.381 3.11 0.00 0.00 3.07
4133 11363 0.684535 CGGGAAATTTGGGGTTTGCT 59.315 50.000 0.00 0.00 0.00 3.91
4234 11467 1.796796 GCGGTTGTTGGAGATGCTC 59.203 57.895 0.00 0.00 0.00 4.26
4235 11468 2.034879 CGCGGTTGTTGGAGATGCT 61.035 57.895 0.00 0.00 0.00 3.79
4236 11469 2.480555 CGCGGTTGTTGGAGATGC 59.519 61.111 0.00 0.00 0.00 3.91
4237 11470 0.739462 TAGCGCGGTTGTTGGAGATG 60.739 55.000 19.09 0.00 0.00 2.90
4238 11471 0.178068 ATAGCGCGGTTGTTGGAGAT 59.822 50.000 19.09 0.00 0.00 2.75
4239 11472 0.818938 TATAGCGCGGTTGTTGGAGA 59.181 50.000 19.09 0.00 0.00 3.71
4240 11473 1.209128 CTATAGCGCGGTTGTTGGAG 58.791 55.000 19.09 1.19 0.00 3.86
4241 11474 0.533491 ACTATAGCGCGGTTGTTGGA 59.467 50.000 19.09 0.00 0.00 3.53
4242 11475 0.650512 CACTATAGCGCGGTTGTTGG 59.349 55.000 19.09 6.77 0.00 3.77
4243 11476 0.026285 GCACTATAGCGCGGTTGTTG 59.974 55.000 19.09 10.24 0.00 3.33
4244 11477 1.087771 GGCACTATAGCGCGGTTGTT 61.088 55.000 19.09 4.59 34.64 2.83
4245 11478 1.520787 GGCACTATAGCGCGGTTGT 60.521 57.895 19.09 10.84 34.64 3.32
4246 11479 2.585869 CGGCACTATAGCGCGGTTG 61.586 63.158 19.09 10.09 34.64 3.77
4247 11480 2.279252 CGGCACTATAGCGCGGTT 60.279 61.111 19.09 7.20 34.64 4.44
4248 11481 4.944372 GCGGCACTATAGCGCGGT 62.944 66.667 17.70 17.70 34.64 5.68
4261 11494 3.604494 AAGGTTTTTAGCGCGCGGC 62.604 57.895 33.06 23.14 44.05 6.53
4262 11495 0.662077 AAAAGGTTTTTAGCGCGCGG 60.662 50.000 33.06 13.66 0.00 6.46
4263 11496 1.125270 AAAAAGGTTTTTAGCGCGCG 58.875 45.000 28.44 28.44 38.50 6.86
4264 11497 1.396690 GCAAAAAGGTTTTTAGCGCGC 60.397 47.619 26.66 26.66 38.23 6.86
4265 11498 1.137019 CGCAAAAAGGTTTTTAGCGCG 60.137 47.619 20.78 17.38 43.28 6.86
4266 11499 2.553536 CGCAAAAAGGTTTTTAGCGC 57.446 45.000 20.78 0.00 43.28 5.92
4267 11500 2.553536 GCGCAAAAAGGTTTTTAGCG 57.446 45.000 24.42 24.42 46.91 4.26
4268 11501 1.396690 GCGCGCAAAAAGGTTTTTAGC 60.397 47.619 29.10 13.33 38.23 3.09
4269 11502 1.137019 CGCGCGCAAAAAGGTTTTTAG 60.137 47.619 32.61 5.06 38.23 1.85
4270 11503 0.847035 CGCGCGCAAAAAGGTTTTTA 59.153 45.000 32.61 0.00 38.23 1.52
4271 11504 1.633697 CGCGCGCAAAAAGGTTTTT 59.366 47.368 32.61 0.00 40.75 1.94
4272 11505 2.866010 GCGCGCGCAAAAAGGTTTT 61.866 52.632 46.11 0.00 41.49 2.43
4273 11506 3.326981 GCGCGCGCAAAAAGGTTT 61.327 55.556 46.11 0.00 41.49 3.27
4295 11528 2.116736 TTTTGCGCTCTGCTGGAACG 62.117 55.000 9.73 0.00 46.63 3.95
4296 11529 0.030638 TTTTTGCGCTCTGCTGGAAC 59.969 50.000 9.73 0.00 46.63 3.62
4297 11530 0.961019 ATTTTTGCGCTCTGCTGGAA 59.039 45.000 9.73 0.00 46.63 3.53
4298 11531 1.468520 GTATTTTTGCGCTCTGCTGGA 59.531 47.619 9.73 0.00 46.63 3.86
4299 11532 1.199789 TGTATTTTTGCGCTCTGCTGG 59.800 47.619 9.73 0.00 46.63 4.85
4300 11533 2.512885 CTGTATTTTTGCGCTCTGCTG 58.487 47.619 9.73 0.00 46.63 4.41
4301 11534 1.135575 GCTGTATTTTTGCGCTCTGCT 60.136 47.619 9.73 0.00 46.63 4.24
4302 11535 1.262882 GCTGTATTTTTGCGCTCTGC 58.737 50.000 9.73 2.76 46.70 4.26
4303 11536 1.527696 CGCTGTATTTTTGCGCTCTG 58.472 50.000 9.73 0.00 43.08 3.35
4304 11537 3.975992 CGCTGTATTTTTGCGCTCT 57.024 47.368 9.73 0.00 43.08 4.09
4309 11542 2.979036 CGCGCGCTGTATTTTTGC 59.021 55.556 30.48 0.00 0.00 3.68
4310 11543 2.823894 CGCGCGCGCTGTATTTTTG 61.824 57.895 45.97 27.04 39.32 2.44
4311 11544 2.573167 CGCGCGCGCTGTATTTTT 60.573 55.556 45.97 0.00 39.32 1.94
4312 11545 3.483665 TCGCGCGCGCTGTATTTT 61.484 55.556 45.97 0.00 39.59 1.82
4313 11546 4.204891 GTCGCGCGCGCTGTATTT 62.205 61.111 45.97 0.00 39.59 1.40
4327 11560 3.124921 AAAATGCCCGGCGAGTCG 61.125 61.111 9.30 8.54 0.00 4.18
4328 11561 2.485122 CAAAATGCCCGGCGAGTC 59.515 61.111 9.30 0.00 0.00 3.36
4329 11562 3.747976 GCAAAATGCCCGGCGAGT 61.748 61.111 9.30 0.00 37.42 4.18
4330 11563 1.723608 TATGCAAAATGCCCGGCGAG 61.724 55.000 9.30 0.00 44.23 5.03
4331 11564 1.106351 ATATGCAAAATGCCCGGCGA 61.106 50.000 9.30 0.00 44.23 5.54
4332 11565 0.595588 TATATGCAAAATGCCCGGCG 59.404 50.000 4.58 0.00 44.23 6.46
4333 11566 2.609350 CATATATGCAAAATGCCCGGC 58.391 47.619 1.04 1.04 44.23 6.13
4334 11567 2.824936 TCCATATATGCAAAATGCCCGG 59.175 45.455 7.24 0.00 44.23 5.73
4335 11568 4.724074 ATCCATATATGCAAAATGCCCG 57.276 40.909 7.24 0.00 44.23 6.13
4336 11569 9.452287 AAAAATATCCATATATGCAAAATGCCC 57.548 29.630 7.24 0.00 44.23 5.36
4370 11603 9.376075 TGTTTGTGTCAAATTTTACATGTTCAT 57.624 25.926 2.30 0.00 0.00 2.57
4371 11604 8.763049 TGTTTGTGTCAAATTTTACATGTTCA 57.237 26.923 2.30 0.00 0.00 3.18
4372 11605 9.687717 CTTGTTTGTGTCAAATTTTACATGTTC 57.312 29.630 2.30 0.00 0.00 3.18
4373 11606 9.213799 ACTTGTTTGTGTCAAATTTTACATGTT 57.786 25.926 2.30 0.00 0.00 2.71
4374 11607 8.770438 ACTTGTTTGTGTCAAATTTTACATGT 57.230 26.923 8.37 2.69 0.00 3.21
4375 11608 9.475505 CAACTTGTTTGTGTCAAATTTTACATG 57.524 29.630 8.37 0.00 0.00 3.21
4376 11609 9.429359 TCAACTTGTTTGTGTCAAATTTTACAT 57.571 25.926 8.37 0.00 36.49 2.29
4377 11610 8.818141 TCAACTTGTTTGTGTCAAATTTTACA 57.182 26.923 1.01 1.01 36.49 2.41
4378 11611 9.687717 CATCAACTTGTTTGTGTCAAATTTTAC 57.312 29.630 0.00 0.00 36.49 2.01
4379 11612 9.645059 TCATCAACTTGTTTGTGTCAAATTTTA 57.355 25.926 0.00 0.00 36.49 1.52
4380 11613 8.545229 TCATCAACTTGTTTGTGTCAAATTTT 57.455 26.923 0.00 0.00 36.49 1.82
4381 11614 8.545229 TTCATCAACTTGTTTGTGTCAAATTT 57.455 26.923 0.00 0.00 36.49 1.82
4382 11615 8.721019 ATTCATCAACTTGTTTGTGTCAAATT 57.279 26.923 0.00 0.00 36.49 1.82
4383 11616 9.814899 TTATTCATCAACTTGTTTGTGTCAAAT 57.185 25.926 0.00 0.00 36.49 2.32
4384 11617 9.645059 TTTATTCATCAACTTGTTTGTGTCAAA 57.355 25.926 0.00 0.00 36.49 2.69
4385 11618 9.645059 TTTTATTCATCAACTTGTTTGTGTCAA 57.355 25.926 0.00 0.00 36.49 3.18
4386 11619 9.645059 TTTTTATTCATCAACTTGTTTGTGTCA 57.355 25.926 0.00 0.00 36.49 3.58
4394 11627 8.938906 GGCATGAATTTTTATTCATCAACTTGT 58.061 29.630 9.72 0.00 46.24 3.16
4395 11628 8.392612 GGGCATGAATTTTTATTCATCAACTTG 58.607 33.333 9.72 2.66 46.24 3.16
4396 11629 8.102047 TGGGCATGAATTTTTATTCATCAACTT 58.898 29.630 9.72 0.00 46.24 2.66
4397 11630 7.550196 GTGGGCATGAATTTTTATTCATCAACT 59.450 33.333 9.72 0.00 46.24 3.16
4398 11631 7.333921 TGTGGGCATGAATTTTTATTCATCAAC 59.666 33.333 9.72 5.64 46.24 3.18
4399 11632 7.392418 TGTGGGCATGAATTTTTATTCATCAA 58.608 30.769 9.72 0.00 46.24 2.57
4400 11633 6.944096 TGTGGGCATGAATTTTTATTCATCA 58.056 32.000 9.72 4.28 46.24 3.07
4401 11634 7.550196 ACTTGTGGGCATGAATTTTTATTCATC 59.450 33.333 9.72 6.24 46.24 2.92
4403 11636 6.767456 ACTTGTGGGCATGAATTTTTATTCA 58.233 32.000 0.00 3.33 43.72 2.57
4404 11637 7.387397 TGAACTTGTGGGCATGAATTTTTATTC 59.613 33.333 0.00 0.00 0.00 1.75
4405 11638 7.222872 TGAACTTGTGGGCATGAATTTTTATT 58.777 30.769 0.00 0.00 0.00 1.40
4406 11639 6.767456 TGAACTTGTGGGCATGAATTTTTAT 58.233 32.000 0.00 0.00 0.00 1.40
4407 11640 6.166984 TGAACTTGTGGGCATGAATTTTTA 57.833 33.333 0.00 0.00 0.00 1.52
4408 11641 5.033589 TGAACTTGTGGGCATGAATTTTT 57.966 34.783 0.00 0.00 0.00 1.94
4409 11642 4.686191 TGAACTTGTGGGCATGAATTTT 57.314 36.364 0.00 0.00 0.00 1.82
4410 11643 4.283978 TGATGAACTTGTGGGCATGAATTT 59.716 37.500 0.00 0.00 0.00 1.82
4411 11644 3.833650 TGATGAACTTGTGGGCATGAATT 59.166 39.130 0.00 0.00 0.00 2.17
4412 11645 3.433343 TGATGAACTTGTGGGCATGAAT 58.567 40.909 0.00 0.00 0.00 2.57
4413 11646 2.874014 TGATGAACTTGTGGGCATGAA 58.126 42.857 0.00 0.00 0.00 2.57
4414 11647 2.583024 TGATGAACTTGTGGGCATGA 57.417 45.000 0.00 0.00 0.00 3.07
4415 11648 3.663995 TTTGATGAACTTGTGGGCATG 57.336 42.857 0.00 0.00 0.00 4.06
4416 11649 4.283978 TGATTTTGATGAACTTGTGGGCAT 59.716 37.500 0.00 0.00 0.00 4.40
4417 11650 3.640498 TGATTTTGATGAACTTGTGGGCA 59.360 39.130 0.00 0.00 0.00 5.36
4418 11651 4.255833 TGATTTTGATGAACTTGTGGGC 57.744 40.909 0.00 0.00 0.00 5.36
4419 11652 4.628333 GCATGATTTTGATGAACTTGTGGG 59.372 41.667 0.00 0.00 0.00 4.61
4420 11653 4.628333 GGCATGATTTTGATGAACTTGTGG 59.372 41.667 0.00 0.00 0.00 4.17
4421 11654 4.628333 GGGCATGATTTTGATGAACTTGTG 59.372 41.667 0.00 0.00 0.00 3.33
4422 11655 4.283978 TGGGCATGATTTTGATGAACTTGT 59.716 37.500 0.00 0.00 0.00 3.16
4423 11656 4.628333 GTGGGCATGATTTTGATGAACTTG 59.372 41.667 0.00 0.00 0.00 3.16
4424 11657 4.283978 TGTGGGCATGATTTTGATGAACTT 59.716 37.500 0.00 0.00 0.00 2.66
4425 11658 3.833650 TGTGGGCATGATTTTGATGAACT 59.166 39.130 0.00 0.00 0.00 3.01
4426 11659 4.191033 TGTGGGCATGATTTTGATGAAC 57.809 40.909 0.00 0.00 0.00 3.18
4427 11660 4.283978 ACTTGTGGGCATGATTTTGATGAA 59.716 37.500 0.00 0.00 0.00 2.57
4428 11661 3.833650 ACTTGTGGGCATGATTTTGATGA 59.166 39.130 0.00 0.00 0.00 2.92
4429 11662 4.196626 ACTTGTGGGCATGATTTTGATG 57.803 40.909 0.00 0.00 0.00 3.07
4430 11663 4.283978 TGAACTTGTGGGCATGATTTTGAT 59.716 37.500 0.00 0.00 0.00 2.57
4431 11664 3.640498 TGAACTTGTGGGCATGATTTTGA 59.360 39.130 0.00 0.00 0.00 2.69
4432 11665 3.992643 TGAACTTGTGGGCATGATTTTG 58.007 40.909 0.00 0.00 0.00 2.44
4433 11666 4.322953 GGATGAACTTGTGGGCATGATTTT 60.323 41.667 0.00 0.00 0.00 1.82
4434 11667 3.196254 GGATGAACTTGTGGGCATGATTT 59.804 43.478 0.00 0.00 0.00 2.17
4435 11668 2.762327 GGATGAACTTGTGGGCATGATT 59.238 45.455 0.00 0.00 0.00 2.57
4436 11669 2.291735 TGGATGAACTTGTGGGCATGAT 60.292 45.455 0.00 0.00 0.00 2.45
4437 11670 1.075212 TGGATGAACTTGTGGGCATGA 59.925 47.619 0.00 0.00 0.00 3.07
4438 11671 1.548081 TGGATGAACTTGTGGGCATG 58.452 50.000 0.00 0.00 0.00 4.06
4439 11672 1.895131 GTTGGATGAACTTGTGGGCAT 59.105 47.619 0.00 0.00 0.00 4.40
4440 11673 1.327303 GTTGGATGAACTTGTGGGCA 58.673 50.000 0.00 0.00 0.00 5.36
4441 11674 0.603065 GGTTGGATGAACTTGTGGGC 59.397 55.000 0.00 0.00 34.66 5.36
4442 11675 1.993956 TGGTTGGATGAACTTGTGGG 58.006 50.000 0.00 0.00 34.66 4.61
4443 11676 2.958355 ACTTGGTTGGATGAACTTGTGG 59.042 45.455 0.00 0.00 34.66 4.17
4444 11677 4.097741 TGAACTTGGTTGGATGAACTTGTG 59.902 41.667 0.00 0.00 34.66 3.33
4445 11678 4.277476 TGAACTTGGTTGGATGAACTTGT 58.723 39.130 0.00 0.00 34.66 3.16
4446 11679 4.916983 TGAACTTGGTTGGATGAACTTG 57.083 40.909 0.00 0.00 34.66 3.16
4447 11680 5.930837 TTTGAACTTGGTTGGATGAACTT 57.069 34.783 0.00 0.00 34.66 2.66
4448 11681 5.739935 GCATTTGAACTTGGTTGGATGAACT 60.740 40.000 0.00 0.00 34.66 3.01
4449 11682 4.448732 GCATTTGAACTTGGTTGGATGAAC 59.551 41.667 0.00 0.00 0.00 3.18
4450 11683 4.100653 TGCATTTGAACTTGGTTGGATGAA 59.899 37.500 0.00 0.00 0.00 2.57
4451 11684 3.640498 TGCATTTGAACTTGGTTGGATGA 59.360 39.130 0.00 0.00 0.00 2.92
4452 11685 3.992643 TGCATTTGAACTTGGTTGGATG 58.007 40.909 0.00 0.00 0.00 3.51
4453 11686 4.686191 TTGCATTTGAACTTGGTTGGAT 57.314 36.364 0.00 0.00 0.00 3.41
4454 11687 4.081198 AGTTTGCATTTGAACTTGGTTGGA 60.081 37.500 0.00 0.00 32.43 3.53
4455 11688 4.190772 AGTTTGCATTTGAACTTGGTTGG 58.809 39.130 0.00 0.00 32.43 3.77
4456 11689 6.900568 TTAGTTTGCATTTGAACTTGGTTG 57.099 33.333 6.81 0.00 37.32 3.77
4457 11690 7.606073 ACTTTTAGTTTGCATTTGAACTTGGTT 59.394 29.630 6.81 0.00 37.32 3.67
4458 11691 7.102993 ACTTTTAGTTTGCATTTGAACTTGGT 58.897 30.769 6.81 0.30 37.32 3.67
4459 11692 7.538303 ACTTTTAGTTTGCATTTGAACTTGG 57.462 32.000 6.81 0.00 37.32 3.61
4460 11693 8.655092 TGAACTTTTAGTTTGCATTTGAACTTG 58.345 29.630 6.81 0.06 38.80 3.16
4461 11694 8.770438 TGAACTTTTAGTTTGCATTTGAACTT 57.230 26.923 6.81 0.00 38.80 2.66
4462 11695 8.770438 TTGAACTTTTAGTTTGCATTTGAACT 57.230 26.923 6.73 6.73 38.80 3.01
4463 11696 8.868916 TCTTGAACTTTTAGTTTGCATTTGAAC 58.131 29.630 0.00 0.00 38.80 3.18
4464 11697 8.868916 GTCTTGAACTTTTAGTTTGCATTTGAA 58.131 29.630 0.00 0.00 38.80 2.69
4465 11698 8.031864 TGTCTTGAACTTTTAGTTTGCATTTGA 58.968 29.630 0.00 0.00 38.80 2.69
4466 11699 8.183830 TGTCTTGAACTTTTAGTTTGCATTTG 57.816 30.769 0.00 0.00 38.80 2.32
4467 11700 8.819974 CATGTCTTGAACTTTTAGTTTGCATTT 58.180 29.630 0.00 0.00 38.80 2.32
4468 11701 8.196771 TCATGTCTTGAACTTTTAGTTTGCATT 58.803 29.630 0.00 0.00 38.80 3.56
4469 11702 7.715657 TCATGTCTTGAACTTTTAGTTTGCAT 58.284 30.769 0.00 0.00 38.80 3.96
4470 11703 7.094508 TCATGTCTTGAACTTTTAGTTTGCA 57.905 32.000 0.00 0.00 38.80 4.08
4471 11704 7.985634 TTCATGTCTTGAACTTTTAGTTTGC 57.014 32.000 0.00 0.00 38.80 3.68
4472 11705 9.787532 TCTTTCATGTCTTGAACTTTTAGTTTG 57.212 29.630 0.80 0.00 43.99 2.93
4473 11706 9.788960 GTCTTTCATGTCTTGAACTTTTAGTTT 57.211 29.630 0.80 0.00 43.99 2.66
4474 11707 8.956426 TGTCTTTCATGTCTTGAACTTTTAGTT 58.044 29.630 0.80 0.00 43.99 2.24
4475 11708 8.398665 GTGTCTTTCATGTCTTGAACTTTTAGT 58.601 33.333 0.80 0.00 43.99 2.24
4476 11709 8.397906 TGTGTCTTTCATGTCTTGAACTTTTAG 58.602 33.333 0.80 0.00 43.99 1.85
4477 11710 8.275015 TGTGTCTTTCATGTCTTGAACTTTTA 57.725 30.769 0.80 0.00 43.99 1.52
4478 11711 7.156876 TGTGTCTTTCATGTCTTGAACTTTT 57.843 32.000 0.80 0.00 43.99 2.27
4479 11712 6.757897 TGTGTCTTTCATGTCTTGAACTTT 57.242 33.333 0.80 0.00 43.99 2.66
4480 11713 6.543465 TGATGTGTCTTTCATGTCTTGAACTT 59.457 34.615 0.80 0.00 43.99 2.66
4481 11714 6.057533 TGATGTGTCTTTCATGTCTTGAACT 58.942 36.000 0.80 0.00 43.99 3.01
4482 11715 6.304356 TGATGTGTCTTTCATGTCTTGAAC 57.696 37.500 0.80 0.00 43.99 3.18
4483 11716 6.513884 GCTTGATGTGTCTTTCATGTCTTGAA 60.514 38.462 0.00 0.00 42.62 2.69
4484 11717 5.049198 GCTTGATGTGTCTTTCATGTCTTGA 60.049 40.000 0.00 0.00 0.00 3.02
4485 11718 5.152097 GCTTGATGTGTCTTTCATGTCTTG 58.848 41.667 0.00 0.00 0.00 3.02
4486 11719 4.217118 GGCTTGATGTGTCTTTCATGTCTT 59.783 41.667 0.00 0.00 0.00 3.01
4487 11720 3.755378 GGCTTGATGTGTCTTTCATGTCT 59.245 43.478 0.00 0.00 0.00 3.41
4488 11721 3.755378 AGGCTTGATGTGTCTTTCATGTC 59.245 43.478 0.00 0.00 0.00 3.06
4489 11722 3.755378 GAGGCTTGATGTGTCTTTCATGT 59.245 43.478 0.00 0.00 0.00 3.21
4490 11723 3.754850 TGAGGCTTGATGTGTCTTTCATG 59.245 43.478 0.00 0.00 0.00 3.07
4491 11724 4.025040 TGAGGCTTGATGTGTCTTTCAT 57.975 40.909 0.00 0.00 0.00 2.57
4492 11725 3.490439 TGAGGCTTGATGTGTCTTTCA 57.510 42.857 0.00 0.00 0.00 2.69
4493 11726 4.260170 AGATGAGGCTTGATGTGTCTTTC 58.740 43.478 0.00 0.00 0.00 2.62
4494 11727 4.298103 AGATGAGGCTTGATGTGTCTTT 57.702 40.909 0.00 0.00 0.00 2.52
4495 11728 3.996921 AGATGAGGCTTGATGTGTCTT 57.003 42.857 0.00 0.00 0.00 3.01
4496 11729 3.262660 TGAAGATGAGGCTTGATGTGTCT 59.737 43.478 0.00 0.00 0.00 3.41
4497 11730 3.603532 TGAAGATGAGGCTTGATGTGTC 58.396 45.455 0.00 0.00 0.00 3.67
4498 11731 3.708403 TGAAGATGAGGCTTGATGTGT 57.292 42.857 0.00 0.00 0.00 3.72
4499 11732 4.452825 AGATGAAGATGAGGCTTGATGTG 58.547 43.478 0.00 0.00 0.00 3.21
4500 11733 4.774660 AGATGAAGATGAGGCTTGATGT 57.225 40.909 0.00 0.00 0.00 3.06
4501 11734 4.515944 GGAAGATGAAGATGAGGCTTGATG 59.484 45.833 0.00 0.00 0.00 3.07
4502 11735 4.412858 AGGAAGATGAAGATGAGGCTTGAT 59.587 41.667 0.00 0.00 0.00 2.57
4503 11736 3.779183 AGGAAGATGAAGATGAGGCTTGA 59.221 43.478 0.00 0.00 0.00 3.02
4504 11737 4.128643 GAGGAAGATGAAGATGAGGCTTG 58.871 47.826 0.00 0.00 0.00 4.01
4505 11738 4.039339 AGAGGAAGATGAAGATGAGGCTT 58.961 43.478 0.00 0.00 0.00 4.35
4506 11739 3.656496 AGAGGAAGATGAAGATGAGGCT 58.344 45.455 0.00 0.00 0.00 4.58
4507 11740 4.101430 AGAAGAGGAAGATGAAGATGAGGC 59.899 45.833 0.00 0.00 0.00 4.70
4508 11741 5.874897 AGAAGAGGAAGATGAAGATGAGG 57.125 43.478 0.00 0.00 0.00 3.86
4509 11742 5.978919 CGAAGAAGAGGAAGATGAAGATGAG 59.021 44.000 0.00 0.00 0.00 2.90
4510 11743 5.420421 ACGAAGAAGAGGAAGATGAAGATGA 59.580 40.000 0.00 0.00 0.00 2.92
4511 11744 5.659463 ACGAAGAAGAGGAAGATGAAGATG 58.341 41.667 0.00 0.00 0.00 2.90
4512 11745 5.656416 AGACGAAGAAGAGGAAGATGAAGAT 59.344 40.000 0.00 0.00 0.00 2.40
4513 11746 5.013547 AGACGAAGAAGAGGAAGATGAAGA 58.986 41.667 0.00 0.00 0.00 2.87
4514 11747 5.323371 AGACGAAGAAGAGGAAGATGAAG 57.677 43.478 0.00 0.00 0.00 3.02
4515 11748 5.620205 CGAAGACGAAGAAGAGGAAGATGAA 60.620 44.000 0.00 0.00 42.66 2.57
4516 11749 4.142578 CGAAGACGAAGAAGAGGAAGATGA 60.143 45.833 0.00 0.00 42.66 2.92
4517 11750 4.101942 CGAAGACGAAGAAGAGGAAGATG 58.898 47.826 0.00 0.00 42.66 2.90
4518 11751 3.759618 ACGAAGACGAAGAAGAGGAAGAT 59.240 43.478 0.00 0.00 42.66 2.40
4519 11752 3.147629 ACGAAGACGAAGAAGAGGAAGA 58.852 45.455 0.00 0.00 42.66 2.87
4520 11753 3.494232 GACGAAGACGAAGAAGAGGAAG 58.506 50.000 0.00 0.00 42.66 3.46
4521 11754 2.228343 GGACGAAGACGAAGAAGAGGAA 59.772 50.000 0.00 0.00 42.66 3.36
4522 11755 1.811359 GGACGAAGACGAAGAAGAGGA 59.189 52.381 0.00 0.00 42.66 3.71
4523 11756 1.813786 AGGACGAAGACGAAGAAGAGG 59.186 52.381 0.00 0.00 42.66 3.69
4524 11757 2.484651 TGAGGACGAAGACGAAGAAGAG 59.515 50.000 0.00 0.00 42.66 2.85
4525 11758 2.501261 TGAGGACGAAGACGAAGAAGA 58.499 47.619 0.00 0.00 42.66 2.87
4526 11759 2.991434 TGAGGACGAAGACGAAGAAG 57.009 50.000 0.00 0.00 42.66 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.