Multiple sequence alignment - TraesCS6B01G250700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G250700 chr6B 100.000 2240 0 0 1 2240 450082295 450084534 0.000000e+00 4137.0
1 TraesCS6B01G250700 chr2A 98.587 1840 25 1 401 2240 726903561 726901723 0.000000e+00 3253.0
2 TraesCS6B01G250700 chr5D 98.152 1840 32 2 401 2240 503248165 503250002 0.000000e+00 3208.0
3 TraesCS6B01G250700 chr5D 98.750 240 3 0 37 276 345938529 345938768 5.720000e-116 427.0
4 TraesCS6B01G250700 chr5D 98.750 240 3 0 37 276 503330635 503330874 5.720000e-116 427.0
5 TraesCS6B01G250700 chr5D 97.500 240 6 0 37 276 6236176 6235937 5.760000e-111 411.0
6 TraesCS6B01G250700 chr5D 100.000 128 0 0 275 402 446176814 446176941 1.030000e-58 237.0
7 TraesCS6B01G250700 chr5D 99.219 128 1 0 275 402 503275710 503275583 4.810000e-57 231.0
8 TraesCS6B01G250700 chr3D 98.152 1840 32 2 401 2240 589260633 589258796 0.000000e+00 3208.0
9 TraesCS6B01G250700 chr3D 100.000 37 0 0 1 37 589280002 589279966 3.990000e-08 69.4
10 TraesCS6B01G250700 chr3B 98.152 1840 33 1 401 2240 201571893 201570055 0.000000e+00 3208.0
11 TraesCS6B01G250700 chr3B 97.935 1840 34 3 401 2240 201542414 201544249 0.000000e+00 3184.0
12 TraesCS6B01G250700 chr3B 97.917 240 5 0 37 276 201492728 201492967 1.240000e-112 416.0
13 TraesCS6B01G250700 chr3B 99.219 128 1 0 275 402 101913691 101913818 4.810000e-57 231.0
14 TraesCS6B01G250700 chr7B 98.043 1840 34 2 401 2240 662729808 662731645 0.000000e+00 3197.0
15 TraesCS6B01G250700 chr7B 97.985 1836 36 1 405 2240 663096528 663094694 0.000000e+00 3184.0
16 TraesCS6B01G250700 chr7A 97.985 1836 36 1 405 2240 258307916 258306082 0.000000e+00 3184.0
17 TraesCS6B01G250700 chr1D 97.880 1840 38 1 401 2240 254528500 254530338 0.000000e+00 3181.0
18 TraesCS6B01G250700 chr1D 97.925 241 4 1 37 276 254476722 254476962 1.240000e-112 416.0
19 TraesCS6B01G250700 chr1A 98.333 240 4 0 37 276 554448221 554447982 2.660000e-114 422.0
20 TraesCS6B01G250700 chr1A 99.219 128 1 0 275 402 554514764 554514891 4.810000e-57 231.0
21 TraesCS6B01G250700 chrUn 97.925 241 4 1 37 276 426380661 426380421 1.240000e-112 416.0
22 TraesCS6B01G250700 chrUn 99.219 128 1 0 275 402 389361651 389361778 4.810000e-57 231.0
23 TraesCS6B01G250700 chrUn 99.219 128 1 0 275 402 421834773 421834900 4.810000e-57 231.0
24 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 93410091 93410056 1.440000e-07 67.6
25 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 216519062 216519027 1.440000e-07 67.6
26 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 216521304 216521339 1.440000e-07 67.6
27 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 216522450 216522415 1.440000e-07 67.6
28 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 249999994 249999959 1.440000e-07 67.6
29 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 280743164 280743129 1.440000e-07 67.6
30 TraesCS6B01G250700 chrUn 100.000 36 0 0 1 36 396205820 396205785 1.440000e-07 67.6
31 TraesCS6B01G250700 chr2D 97.925 241 4 1 37 276 648663579 648663339 1.240000e-112 416.0
32 TraesCS6B01G250700 chr7D 97.083 240 6 1 37 276 88619353 88619115 9.630000e-109 403.0
33 TraesCS6B01G250700 chr7D 99.219 128 1 0 275 402 231577114 231577241 4.810000e-57 231.0
34 TraesCS6B01G250700 chr6D 99.219 128 1 0 275 402 168257442 168257569 4.810000e-57 231.0
35 TraesCS6B01G250700 chr6D 100.000 36 0 0 1 36 168252224 168252189 1.440000e-07 67.6
36 TraesCS6B01G250700 chr3A 99.219 128 1 0 275 402 672907494 672907367 4.810000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G250700 chr6B 450082295 450084534 2239 False 4137 4137 100.000 1 2240 1 chr6B.!!$F1 2239
1 TraesCS6B01G250700 chr2A 726901723 726903561 1838 True 3253 3253 98.587 401 2240 1 chr2A.!!$R1 1839
2 TraesCS6B01G250700 chr5D 503248165 503250002 1837 False 3208 3208 98.152 401 2240 1 chr5D.!!$F3 1839
3 TraesCS6B01G250700 chr3D 589258796 589260633 1837 True 3208 3208 98.152 401 2240 1 chr3D.!!$R1 1839
4 TraesCS6B01G250700 chr3B 201570055 201571893 1838 True 3208 3208 98.152 401 2240 1 chr3B.!!$R1 1839
5 TraesCS6B01G250700 chr3B 201542414 201544249 1835 False 3184 3184 97.935 401 2240 1 chr3B.!!$F3 1839
6 TraesCS6B01G250700 chr7B 662729808 662731645 1837 False 3197 3197 98.043 401 2240 1 chr7B.!!$F1 1839
7 TraesCS6B01G250700 chr7B 663094694 663096528 1834 True 3184 3184 97.985 405 2240 1 chr7B.!!$R1 1835
8 TraesCS6B01G250700 chr7A 258306082 258307916 1834 True 3184 3184 97.985 405 2240 1 chr7A.!!$R1 1835
9 TraesCS6B01G250700 chr1D 254528500 254530338 1838 False 3181 3181 97.880 401 2240 1 chr1D.!!$F2 1839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034863 TCGGAATTGTACCCAAGCCC 60.035 55.0 0.0 0.0 33.17 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1837 1.612146 TTCTGTCGCTCCATCCCCA 60.612 57.895 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.950836 TATGTTATGCATGGCCGTGC 59.049 50.000 37.97 37.97 45.25 5.34
39 40 3.329929 CCTAAGGGCATATCGGTAACC 57.670 52.381 0.00 0.00 0.00 2.85
40 41 2.635915 CCTAAGGGCATATCGGTAACCA 59.364 50.000 1.04 0.00 0.00 3.67
41 42 3.071892 CCTAAGGGCATATCGGTAACCAA 59.928 47.826 1.04 0.00 0.00 3.67
42 43 2.632987 AGGGCATATCGGTAACCAAC 57.367 50.000 1.04 0.00 0.00 3.77
43 44 1.841277 AGGGCATATCGGTAACCAACA 59.159 47.619 1.04 0.00 0.00 3.33
44 45 2.240160 AGGGCATATCGGTAACCAACAA 59.760 45.455 1.04 0.00 0.00 2.83
45 46 2.356695 GGGCATATCGGTAACCAACAAC 59.643 50.000 1.04 0.00 0.00 3.32
46 47 3.275999 GGCATATCGGTAACCAACAACT 58.724 45.455 0.00 0.00 0.00 3.16
47 48 4.444536 GGCATATCGGTAACCAACAACTA 58.555 43.478 0.00 0.00 0.00 2.24
48 49 4.877251 GGCATATCGGTAACCAACAACTAA 59.123 41.667 0.00 0.00 0.00 2.24
49 50 5.007332 GGCATATCGGTAACCAACAACTAAG 59.993 44.000 0.00 0.00 0.00 2.18
50 51 5.813672 GCATATCGGTAACCAACAACTAAGA 59.186 40.000 0.00 0.00 0.00 2.10
51 52 6.482308 GCATATCGGTAACCAACAACTAAGAT 59.518 38.462 0.00 0.00 0.00 2.40
52 53 7.654520 GCATATCGGTAACCAACAACTAAGATA 59.345 37.037 0.00 0.00 0.00 1.98
53 54 9.537192 CATATCGGTAACCAACAACTAAGATAA 57.463 33.333 0.00 0.00 0.00 1.75
54 55 9.760077 ATATCGGTAACCAACAACTAAGATAAG 57.240 33.333 0.00 0.00 0.00 1.73
55 56 5.870978 TCGGTAACCAACAACTAAGATAAGC 59.129 40.000 0.00 0.00 0.00 3.09
56 57 5.640357 CGGTAACCAACAACTAAGATAAGCA 59.360 40.000 0.00 0.00 0.00 3.91
57 58 6.401796 CGGTAACCAACAACTAAGATAAGCAC 60.402 42.308 0.00 0.00 0.00 4.40
58 59 5.607119 AACCAACAACTAAGATAAGCACG 57.393 39.130 0.00 0.00 0.00 5.34
59 60 4.890088 ACCAACAACTAAGATAAGCACGA 58.110 39.130 0.00 0.00 0.00 4.35
60 61 5.302360 ACCAACAACTAAGATAAGCACGAA 58.698 37.500 0.00 0.00 0.00 3.85
61 62 5.761234 ACCAACAACTAAGATAAGCACGAAA 59.239 36.000 0.00 0.00 0.00 3.46
62 63 6.261381 ACCAACAACTAAGATAAGCACGAAAA 59.739 34.615 0.00 0.00 0.00 2.29
63 64 7.040686 ACCAACAACTAAGATAAGCACGAAAAT 60.041 33.333 0.00 0.00 0.00 1.82
64 65 7.481798 CCAACAACTAAGATAAGCACGAAAATC 59.518 37.037 0.00 0.00 0.00 2.17
65 66 7.667043 ACAACTAAGATAAGCACGAAAATCA 57.333 32.000 0.00 0.00 0.00 2.57
66 67 8.094798 ACAACTAAGATAAGCACGAAAATCAA 57.905 30.769 0.00 0.00 0.00 2.57
67 68 8.564574 ACAACTAAGATAAGCACGAAAATCAAA 58.435 29.630 0.00 0.00 0.00 2.69
68 69 9.055248 CAACTAAGATAAGCACGAAAATCAAAG 57.945 33.333 0.00 0.00 0.00 2.77
69 70 7.244192 ACTAAGATAAGCACGAAAATCAAAGC 58.756 34.615 0.00 0.00 0.00 3.51
70 71 5.886960 AGATAAGCACGAAAATCAAAGCT 57.113 34.783 0.00 0.00 0.00 3.74
71 72 6.259550 AGATAAGCACGAAAATCAAAGCTT 57.740 33.333 0.00 0.00 43.80 3.74
72 73 6.317857 AGATAAGCACGAAAATCAAAGCTTC 58.682 36.000 0.00 0.00 41.87 3.86
73 74 3.988379 AGCACGAAAATCAAAGCTTCA 57.012 38.095 0.00 0.00 0.00 3.02
74 75 4.305989 AGCACGAAAATCAAAGCTTCAA 57.694 36.364 0.00 0.00 0.00 2.69
75 76 4.874970 AGCACGAAAATCAAAGCTTCAAT 58.125 34.783 0.00 0.00 0.00 2.57
76 77 6.012658 AGCACGAAAATCAAAGCTTCAATA 57.987 33.333 0.00 0.00 0.00 1.90
77 78 6.446318 AGCACGAAAATCAAAGCTTCAATAA 58.554 32.000 0.00 0.00 0.00 1.40
78 79 6.922957 AGCACGAAAATCAAAGCTTCAATAAA 59.077 30.769 0.00 0.00 0.00 1.40
79 80 7.437862 AGCACGAAAATCAAAGCTTCAATAAAA 59.562 29.630 0.00 0.00 0.00 1.52
80 81 8.061268 GCACGAAAATCAAAGCTTCAATAAAAA 58.939 29.630 0.00 0.00 0.00 1.94
81 82 9.356929 CACGAAAATCAAAGCTTCAATAAAAAC 57.643 29.630 0.00 0.00 0.00 2.43
82 83 9.092876 ACGAAAATCAAAGCTTCAATAAAAACA 57.907 25.926 0.00 0.00 0.00 2.83
83 84 9.571804 CGAAAATCAAAGCTTCAATAAAAACAG 57.428 29.630 0.00 0.00 0.00 3.16
89 90 9.677567 TCAAAGCTTCAATAAAAACAGATACAC 57.322 29.630 0.00 0.00 0.00 2.90
90 91 8.915654 CAAAGCTTCAATAAAAACAGATACACC 58.084 33.333 0.00 0.00 0.00 4.16
91 92 8.409358 AAGCTTCAATAAAAACAGATACACCT 57.591 30.769 0.00 0.00 0.00 4.00
92 93 9.515226 AAGCTTCAATAAAAACAGATACACCTA 57.485 29.630 0.00 0.00 0.00 3.08
93 94 9.515226 AGCTTCAATAAAAACAGATACACCTAA 57.485 29.630 0.00 0.00 0.00 2.69
100 101 7.515957 AAAAACAGATACACCTAATACGTCG 57.484 36.000 0.00 0.00 0.00 5.12
101 102 6.441093 AAACAGATACACCTAATACGTCGA 57.559 37.500 0.00 0.00 0.00 4.20
102 103 6.441093 AACAGATACACCTAATACGTCGAA 57.559 37.500 0.00 0.00 0.00 3.71
103 104 6.441093 ACAGATACACCTAATACGTCGAAA 57.559 37.500 0.00 0.00 0.00 3.46
104 105 6.261118 ACAGATACACCTAATACGTCGAAAC 58.739 40.000 0.00 0.00 0.00 2.78
105 106 6.094603 ACAGATACACCTAATACGTCGAAACT 59.905 38.462 0.00 0.00 0.00 2.66
106 107 6.632035 CAGATACACCTAATACGTCGAAACTC 59.368 42.308 0.00 0.00 0.00 3.01
107 108 4.771590 ACACCTAATACGTCGAAACTCA 57.228 40.909 0.00 0.00 0.00 3.41
108 109 5.320549 ACACCTAATACGTCGAAACTCAT 57.679 39.130 0.00 0.00 0.00 2.90
109 110 5.717119 ACACCTAATACGTCGAAACTCATT 58.283 37.500 0.00 0.00 0.00 2.57
110 111 5.575606 ACACCTAATACGTCGAAACTCATTG 59.424 40.000 0.00 0.00 0.00 2.82
111 112 4.565564 ACCTAATACGTCGAAACTCATTGC 59.434 41.667 0.00 0.00 0.00 3.56
112 113 4.025979 CCTAATACGTCGAAACTCATTGCC 60.026 45.833 0.00 0.00 0.00 4.52
113 114 1.717194 TACGTCGAAACTCATTGCCC 58.283 50.000 0.00 0.00 0.00 5.36
114 115 0.250124 ACGTCGAAACTCATTGCCCA 60.250 50.000 0.00 0.00 0.00 5.36
115 116 0.871722 CGTCGAAACTCATTGCCCAA 59.128 50.000 0.00 0.00 0.00 4.12
116 117 1.135972 CGTCGAAACTCATTGCCCAAG 60.136 52.381 0.00 0.00 0.00 3.61
117 118 1.200020 GTCGAAACTCATTGCCCAAGG 59.800 52.381 0.00 0.00 0.00 3.61
118 119 0.527565 CGAAACTCATTGCCCAAGGG 59.472 55.000 0.00 0.00 38.57 3.95
119 120 1.632589 GAAACTCATTGCCCAAGGGT 58.367 50.000 7.05 0.00 37.65 4.34
120 121 2.802719 GAAACTCATTGCCCAAGGGTA 58.197 47.619 7.05 0.00 37.65 3.69
121 122 3.365472 GAAACTCATTGCCCAAGGGTAT 58.635 45.455 7.05 0.00 37.65 2.73
122 123 4.532834 GAAACTCATTGCCCAAGGGTATA 58.467 43.478 7.05 0.00 37.65 1.47
123 124 3.864789 ACTCATTGCCCAAGGGTATAG 57.135 47.619 7.05 3.50 37.65 1.31
124 125 3.393687 ACTCATTGCCCAAGGGTATAGA 58.606 45.455 7.05 2.83 37.65 1.98
125 126 3.785887 ACTCATTGCCCAAGGGTATAGAA 59.214 43.478 7.05 0.00 37.65 2.10
126 127 4.229582 ACTCATTGCCCAAGGGTATAGAAA 59.770 41.667 7.05 0.00 37.65 2.52
127 128 4.792068 TCATTGCCCAAGGGTATAGAAAG 58.208 43.478 7.05 0.00 37.65 2.62
128 129 4.476846 TCATTGCCCAAGGGTATAGAAAGA 59.523 41.667 7.05 0.00 37.65 2.52
129 130 3.926058 TGCCCAAGGGTATAGAAAGAC 57.074 47.619 7.05 0.00 37.65 3.01
130 131 2.169769 TGCCCAAGGGTATAGAAAGACG 59.830 50.000 7.05 0.00 37.65 4.18
131 132 2.484947 GCCCAAGGGTATAGAAAGACGG 60.485 54.545 7.05 0.00 37.65 4.79
132 133 2.770232 CCCAAGGGTATAGAAAGACGGT 59.230 50.000 0.00 0.00 0.00 4.83
133 134 3.199289 CCCAAGGGTATAGAAAGACGGTT 59.801 47.826 0.00 0.00 0.00 4.44
134 135 4.324022 CCCAAGGGTATAGAAAGACGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
135 136 4.874396 CCAAGGGTATAGAAAGACGGTTTC 59.126 45.833 4.74 4.74 0.00 2.78
136 137 4.750021 AGGGTATAGAAAGACGGTTTCC 57.250 45.455 8.46 0.00 0.00 3.13
137 138 4.098894 AGGGTATAGAAAGACGGTTTCCA 58.901 43.478 8.46 0.00 0.00 3.53
138 139 4.081254 AGGGTATAGAAAGACGGTTTCCAC 60.081 45.833 8.46 5.43 0.00 4.02
139 140 4.322953 GGGTATAGAAAGACGGTTTCCACA 60.323 45.833 8.46 0.00 0.00 4.17
140 141 5.425630 GGTATAGAAAGACGGTTTCCACAT 58.574 41.667 8.46 4.07 0.00 3.21
141 142 5.522824 GGTATAGAAAGACGGTTTCCACATC 59.477 44.000 8.46 0.00 0.00 3.06
142 143 3.485463 AGAAAGACGGTTTCCACATCA 57.515 42.857 8.46 0.00 0.00 3.07
143 144 3.815809 AGAAAGACGGTTTCCACATCAA 58.184 40.909 8.46 0.00 0.00 2.57
144 145 4.204012 AGAAAGACGGTTTCCACATCAAA 58.796 39.130 8.46 0.00 0.00 2.69
145 146 4.642885 AGAAAGACGGTTTCCACATCAAAA 59.357 37.500 8.46 0.00 0.00 2.44
146 147 4.993029 AAGACGGTTTCCACATCAAAAA 57.007 36.364 0.00 0.00 0.00 1.94
147 148 4.301637 AGACGGTTTCCACATCAAAAAC 57.698 40.909 0.00 0.00 33.22 2.43
148 149 3.697045 AGACGGTTTCCACATCAAAAACA 59.303 39.130 0.00 0.00 35.17 2.83
149 150 4.158764 AGACGGTTTCCACATCAAAAACAA 59.841 37.500 0.00 0.00 35.17 2.83
150 151 4.177783 ACGGTTTCCACATCAAAAACAAC 58.822 39.130 0.00 0.00 35.17 3.32
151 152 4.177026 CGGTTTCCACATCAAAAACAACA 58.823 39.130 0.00 0.00 35.17 3.33
152 153 4.627467 CGGTTTCCACATCAAAAACAACAA 59.373 37.500 0.00 0.00 35.17 2.83
153 154 5.120830 CGGTTTCCACATCAAAAACAACAAA 59.879 36.000 0.00 0.00 35.17 2.83
154 155 6.347725 CGGTTTCCACATCAAAAACAACAAAA 60.348 34.615 0.00 0.00 35.17 2.44
155 156 7.363431 GGTTTCCACATCAAAAACAACAAAAA 58.637 30.769 0.00 0.00 35.17 1.94
156 157 7.324856 GGTTTCCACATCAAAAACAACAAAAAC 59.675 33.333 0.00 0.00 35.17 2.43
157 158 6.158175 TCCACATCAAAAACAACAAAAACG 57.842 33.333 0.00 0.00 0.00 3.60
158 159 5.926542 TCCACATCAAAAACAACAAAAACGA 59.073 32.000 0.00 0.00 0.00 3.85
159 160 6.090088 TCCACATCAAAAACAACAAAAACGAG 59.910 34.615 0.00 0.00 0.00 4.18
160 161 5.727592 CACATCAAAAACAACAAAAACGAGC 59.272 36.000 0.00 0.00 0.00 5.03
161 162 4.554162 TCAAAAACAACAAAAACGAGCG 57.446 36.364 0.00 0.00 0.00 5.03
162 163 3.080739 CAAAAACAACAAAAACGAGCGC 58.919 40.909 0.00 0.00 0.00 5.92
163 164 1.983972 AAACAACAAAAACGAGCGCA 58.016 40.000 11.47 0.00 0.00 6.09
164 165 1.983972 AACAACAAAAACGAGCGCAA 58.016 40.000 11.47 0.00 0.00 4.85
165 166 1.983972 ACAACAAAAACGAGCGCAAA 58.016 40.000 11.47 0.00 0.00 3.68
166 167 1.651631 ACAACAAAAACGAGCGCAAAC 59.348 42.857 11.47 0.00 0.00 2.93
167 168 1.651138 CAACAAAAACGAGCGCAAACA 59.349 42.857 11.47 0.00 0.00 2.83
168 169 2.202295 ACAAAAACGAGCGCAAACAT 57.798 40.000 11.47 0.00 0.00 2.71
169 170 3.341857 ACAAAAACGAGCGCAAACATA 57.658 38.095 11.47 0.00 0.00 2.29
170 171 3.896122 ACAAAAACGAGCGCAAACATAT 58.104 36.364 11.47 0.00 0.00 1.78
171 172 5.037015 ACAAAAACGAGCGCAAACATATA 57.963 34.783 11.47 0.00 0.00 0.86
172 173 5.453648 ACAAAAACGAGCGCAAACATATAA 58.546 33.333 11.47 0.00 0.00 0.98
173 174 6.090129 ACAAAAACGAGCGCAAACATATAAT 58.910 32.000 11.47 0.00 0.00 1.28
174 175 7.244898 ACAAAAACGAGCGCAAACATATAATA 58.755 30.769 11.47 0.00 0.00 0.98
175 176 7.428183 ACAAAAACGAGCGCAAACATATAATAG 59.572 33.333 11.47 0.00 0.00 1.73
176 177 4.647291 ACGAGCGCAAACATATAATAGC 57.353 40.909 11.47 0.00 0.00 2.97
177 178 3.121279 ACGAGCGCAAACATATAATAGCG 59.879 43.478 11.47 0.00 46.99 4.26
178 179 3.121279 CGAGCGCAAACATATAATAGCGT 59.879 43.478 11.47 0.00 46.09 5.07
179 180 4.322539 CGAGCGCAAACATATAATAGCGTA 59.677 41.667 11.47 0.00 46.09 4.42
180 181 5.004440 CGAGCGCAAACATATAATAGCGTAT 59.996 40.000 11.47 0.00 46.09 3.06
181 182 6.453791 CGAGCGCAAACATATAATAGCGTATT 60.454 38.462 11.47 0.00 46.09 1.89
182 183 6.762108 AGCGCAAACATATAATAGCGTATTC 58.238 36.000 11.47 0.00 46.09 1.75
183 184 5.666878 GCGCAAACATATAATAGCGTATTCG 59.333 40.000 0.30 0.00 46.09 3.34
184 185 6.175770 CGCAAACATATAATAGCGTATTCGG 58.824 40.000 0.00 0.00 40.25 4.30
185 186 6.034150 CGCAAACATATAATAGCGTATTCGGA 59.966 38.462 0.00 0.00 40.25 4.55
186 187 7.411049 CGCAAACATATAATAGCGTATTCGGAA 60.411 37.037 0.00 0.00 40.25 4.30
187 188 8.388103 GCAAACATATAATAGCGTATTCGGAAT 58.612 33.333 8.49 8.49 37.56 3.01
190 191 8.997621 ACATATAATAGCGTATTCGGAATTGT 57.002 30.769 8.76 0.00 37.56 2.71
193 194 7.823149 ATAATAGCGTATTCGGAATTGTACC 57.177 36.000 8.76 0.00 37.56 3.34
194 195 2.830104 AGCGTATTCGGAATTGTACCC 58.170 47.619 8.76 0.00 37.56 3.69
195 196 2.168936 AGCGTATTCGGAATTGTACCCA 59.831 45.455 8.76 0.00 37.56 4.51
196 197 2.937799 GCGTATTCGGAATTGTACCCAA 59.062 45.455 8.76 0.00 37.56 4.12
197 198 3.001939 GCGTATTCGGAATTGTACCCAAG 59.998 47.826 8.76 0.00 37.56 3.61
198 199 3.001939 CGTATTCGGAATTGTACCCAAGC 59.998 47.826 8.76 0.00 33.17 4.01
199 200 1.828979 TTCGGAATTGTACCCAAGCC 58.171 50.000 0.00 0.00 33.17 4.35
200 201 0.034863 TCGGAATTGTACCCAAGCCC 60.035 55.000 0.00 0.00 33.17 5.19
201 202 1.035385 CGGAATTGTACCCAAGCCCC 61.035 60.000 0.00 0.00 33.17 5.80
202 203 0.335019 GGAATTGTACCCAAGCCCCT 59.665 55.000 0.00 0.00 33.17 4.79
203 204 1.685180 GGAATTGTACCCAAGCCCCTC 60.685 57.143 0.00 0.00 33.17 4.30
204 205 0.335019 AATTGTACCCAAGCCCCTCC 59.665 55.000 0.00 0.00 33.17 4.30
205 206 1.580994 ATTGTACCCAAGCCCCTCCC 61.581 60.000 0.00 0.00 33.17 4.30
206 207 2.612746 GTACCCAAGCCCCTCCCA 60.613 66.667 0.00 0.00 0.00 4.37
207 208 2.006991 GTACCCAAGCCCCTCCCAT 61.007 63.158 0.00 0.00 0.00 4.00
208 209 2.006415 TACCCAAGCCCCTCCCATG 61.006 63.158 0.00 0.00 0.00 3.66
209 210 4.147587 CCCAAGCCCCTCCCATGG 62.148 72.222 4.14 4.14 0.00 3.66
210 211 4.147587 CCAAGCCCCTCCCATGGG 62.148 72.222 26.30 26.30 46.56 4.00
211 212 3.350163 CAAGCCCCTCCCATGGGT 61.350 66.667 30.28 7.14 45.70 4.51
212 213 2.537959 AAGCCCCTCCCATGGGTT 60.538 61.111 30.28 13.43 45.70 4.11
213 214 2.626467 AAGCCCCTCCCATGGGTTC 61.626 63.158 30.28 15.00 45.70 3.62
214 215 3.023735 GCCCCTCCCATGGGTTCT 61.024 66.667 30.28 0.00 45.70 3.01
215 216 1.696314 GCCCCTCCCATGGGTTCTA 60.696 63.158 30.28 10.36 45.70 2.10
216 217 1.068352 GCCCCTCCCATGGGTTCTAT 61.068 60.000 30.28 0.00 45.70 1.98
217 218 1.768725 GCCCCTCCCATGGGTTCTATA 60.769 57.143 30.28 9.15 45.70 1.31
218 219 1.985895 CCCCTCCCATGGGTTCTATAC 59.014 57.143 30.28 0.00 45.70 1.47
219 220 1.985895 CCCTCCCATGGGTTCTATACC 59.014 57.143 30.28 0.00 46.99 2.73
234 235 8.345724 GGTTCTATACCCGATTCATAACTAGA 57.654 38.462 0.00 0.00 41.43 2.43
235 236 8.800332 GGTTCTATACCCGATTCATAACTAGAA 58.200 37.037 0.00 0.00 41.43 2.10
238 239 8.521176 TCTATACCCGATTCATAACTAGAAAGC 58.479 37.037 0.00 0.00 0.00 3.51
239 240 5.615925 ACCCGATTCATAACTAGAAAGCT 57.384 39.130 0.00 0.00 0.00 3.74
240 241 5.990668 ACCCGATTCATAACTAGAAAGCTT 58.009 37.500 0.00 0.00 0.00 3.74
241 242 6.049790 ACCCGATTCATAACTAGAAAGCTTC 58.950 40.000 0.00 0.00 0.00 3.86
242 243 6.127026 ACCCGATTCATAACTAGAAAGCTTCT 60.127 38.462 0.00 1.33 43.72 2.85
243 244 6.422400 CCCGATTCATAACTAGAAAGCTTCTC 59.578 42.308 0.00 0.00 41.14 2.87
244 245 7.206687 CCGATTCATAACTAGAAAGCTTCTCT 58.793 38.462 0.00 7.84 41.14 3.10
245 246 7.168972 CCGATTCATAACTAGAAAGCTTCTCTG 59.831 40.741 16.59 11.11 41.14 3.35
246 247 7.168972 CGATTCATAACTAGAAAGCTTCTCTGG 59.831 40.741 16.59 15.99 41.14 3.86
247 248 6.859112 TCATAACTAGAAAGCTTCTCTGGT 57.141 37.500 16.33 16.33 41.14 4.00
248 249 6.868622 TCATAACTAGAAAGCTTCTCTGGTC 58.131 40.000 19.84 6.75 41.14 4.02
249 250 4.545208 AACTAGAAAGCTTCTCTGGTCC 57.455 45.455 19.84 0.00 41.14 4.46
250 251 3.785364 ACTAGAAAGCTTCTCTGGTCCT 58.215 45.455 16.33 0.00 41.14 3.85
251 252 4.164204 ACTAGAAAGCTTCTCTGGTCCTT 58.836 43.478 16.33 1.78 41.14 3.36
252 253 3.694043 AGAAAGCTTCTCTGGTCCTTC 57.306 47.619 0.00 0.00 34.07 3.46
253 254 2.975489 AGAAAGCTTCTCTGGTCCTTCA 59.025 45.455 0.00 0.00 34.07 3.02
254 255 2.849294 AAGCTTCTCTGGTCCTTCAC 57.151 50.000 0.00 0.00 0.00 3.18
255 256 2.022718 AGCTTCTCTGGTCCTTCACT 57.977 50.000 0.00 0.00 0.00 3.41
256 257 3.176924 AGCTTCTCTGGTCCTTCACTA 57.823 47.619 0.00 0.00 0.00 2.74
257 258 3.511477 AGCTTCTCTGGTCCTTCACTAA 58.489 45.455 0.00 0.00 0.00 2.24
258 259 3.259625 AGCTTCTCTGGTCCTTCACTAAC 59.740 47.826 0.00 0.00 0.00 2.34
259 260 3.617775 GCTTCTCTGGTCCTTCACTAACC 60.618 52.174 0.00 0.00 0.00 2.85
260 261 2.168496 TCTCTGGTCCTTCACTAACCG 58.832 52.381 0.00 0.00 35.76 4.44
261 262 1.204941 CTCTGGTCCTTCACTAACCGG 59.795 57.143 0.00 0.00 40.23 5.28
262 263 0.249398 CTGGTCCTTCACTAACCGGG 59.751 60.000 6.32 0.00 36.06 5.73
263 264 1.196104 TGGTCCTTCACTAACCGGGG 61.196 60.000 6.32 0.00 35.76 5.73
264 265 1.078637 GTCCTTCACTAACCGGGGC 60.079 63.158 6.32 0.00 0.00 5.80
265 266 1.229400 TCCTTCACTAACCGGGGCT 60.229 57.895 6.32 0.00 0.00 5.19
266 267 0.041535 TCCTTCACTAACCGGGGCTA 59.958 55.000 6.32 0.00 0.00 3.93
267 268 0.906775 CCTTCACTAACCGGGGCTAA 59.093 55.000 6.32 0.00 0.00 3.09
268 269 1.279846 CCTTCACTAACCGGGGCTAAA 59.720 52.381 6.32 0.00 0.00 1.85
269 270 2.290450 CCTTCACTAACCGGGGCTAAAA 60.290 50.000 6.32 0.00 0.00 1.52
270 271 2.773993 TCACTAACCGGGGCTAAAAG 57.226 50.000 6.32 0.00 0.00 2.27
271 272 1.980036 TCACTAACCGGGGCTAAAAGT 59.020 47.619 6.32 0.00 0.00 2.66
272 273 2.027837 TCACTAACCGGGGCTAAAAGTC 60.028 50.000 6.32 0.00 0.00 3.01
273 274 1.280133 ACTAACCGGGGCTAAAAGTCC 59.720 52.381 6.32 0.00 39.92 3.85
274 275 1.558294 CTAACCGGGGCTAAAAGTCCT 59.442 52.381 6.32 0.00 40.65 3.85
275 276 0.037734 AACCGGGGCTAAAAGTCCTG 59.962 55.000 6.32 0.00 45.96 3.86
276 277 1.749258 CCGGGGCTAAAAGTCCTGC 60.749 63.158 0.59 0.00 45.03 4.85
277 278 1.299976 CGGGGCTAAAAGTCCTGCT 59.700 57.895 0.00 0.00 39.88 4.24
278 279 0.744771 CGGGGCTAAAAGTCCTGCTC 60.745 60.000 0.00 0.00 39.88 4.26
279 280 0.328258 GGGGCTAAAAGTCCTGCTCA 59.672 55.000 0.00 0.00 40.65 4.26
280 281 1.271926 GGGGCTAAAAGTCCTGCTCAA 60.272 52.381 0.00 0.00 40.65 3.02
281 282 2.514803 GGGCTAAAAGTCCTGCTCAAA 58.485 47.619 0.00 0.00 36.93 2.69
282 283 2.229062 GGGCTAAAAGTCCTGCTCAAAC 59.771 50.000 0.00 0.00 36.93 2.93
283 284 2.229062 GGCTAAAAGTCCTGCTCAAACC 59.771 50.000 0.00 0.00 0.00 3.27
284 285 2.095718 GCTAAAAGTCCTGCTCAAACCG 60.096 50.000 0.00 0.00 0.00 4.44
285 286 1.318576 AAAAGTCCTGCTCAAACCGG 58.681 50.000 0.00 0.00 0.00 5.28
286 287 0.472471 AAAGTCCTGCTCAAACCGGA 59.528 50.000 9.46 0.00 0.00 5.14
287 288 0.472471 AAGTCCTGCTCAAACCGGAA 59.528 50.000 9.46 0.00 0.00 4.30
288 289 0.250338 AGTCCTGCTCAAACCGGAAC 60.250 55.000 9.46 0.00 0.00 3.62
289 290 0.250338 GTCCTGCTCAAACCGGAACT 60.250 55.000 9.46 0.00 0.00 3.01
290 291 0.250295 TCCTGCTCAAACCGGAACTG 60.250 55.000 9.46 1.53 0.00 3.16
291 292 1.576421 CTGCTCAAACCGGAACTGC 59.424 57.895 9.46 6.35 0.00 4.40
292 293 0.886490 CTGCTCAAACCGGAACTGCT 60.886 55.000 9.46 0.00 0.00 4.24
293 294 0.394938 TGCTCAAACCGGAACTGCTA 59.605 50.000 9.46 0.00 0.00 3.49
294 295 1.079503 GCTCAAACCGGAACTGCTAG 58.920 55.000 9.46 0.00 0.00 3.42
295 296 1.337823 GCTCAAACCGGAACTGCTAGA 60.338 52.381 9.46 0.00 0.00 2.43
296 297 2.611518 CTCAAACCGGAACTGCTAGAG 58.388 52.381 9.46 0.00 0.00 2.43
297 298 1.275291 TCAAACCGGAACTGCTAGAGG 59.725 52.381 9.46 0.00 0.00 3.69
298 299 1.275291 CAAACCGGAACTGCTAGAGGA 59.725 52.381 9.46 0.00 0.00 3.71
299 300 1.640917 AACCGGAACTGCTAGAGGAA 58.359 50.000 9.46 0.00 0.00 3.36
300 301 0.896226 ACCGGAACTGCTAGAGGAAC 59.104 55.000 9.46 0.00 0.00 3.62
301 302 0.179134 CCGGAACTGCTAGAGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
302 303 0.809385 CGGAACTGCTAGAGGAACGA 59.191 55.000 0.00 0.00 0.00 3.85
303 304 1.201647 CGGAACTGCTAGAGGAACGAA 59.798 52.381 0.00 0.00 0.00 3.85
304 305 2.159226 CGGAACTGCTAGAGGAACGAAT 60.159 50.000 0.00 0.00 0.00 3.34
305 306 3.676324 CGGAACTGCTAGAGGAACGAATT 60.676 47.826 0.00 0.00 0.00 2.17
306 307 4.254492 GGAACTGCTAGAGGAACGAATTT 58.746 43.478 0.00 0.00 0.00 1.82
307 308 4.695928 GGAACTGCTAGAGGAACGAATTTT 59.304 41.667 0.00 0.00 0.00 1.82
308 309 5.163844 GGAACTGCTAGAGGAACGAATTTTC 60.164 44.000 0.00 0.00 0.00 2.29
309 310 4.894784 ACTGCTAGAGGAACGAATTTTCA 58.105 39.130 0.00 0.00 0.00 2.69
310 311 5.305585 ACTGCTAGAGGAACGAATTTTCAA 58.694 37.500 0.00 0.00 0.00 2.69
311 312 5.940470 ACTGCTAGAGGAACGAATTTTCAAT 59.060 36.000 0.00 0.00 0.00 2.57
312 313 7.103641 ACTGCTAGAGGAACGAATTTTCAATA 58.896 34.615 0.00 0.00 0.00 1.90
313 314 7.278868 ACTGCTAGAGGAACGAATTTTCAATAG 59.721 37.037 0.00 0.00 0.00 1.73
314 315 6.037172 TGCTAGAGGAACGAATTTTCAATAGC 59.963 38.462 0.00 10.38 35.26 2.97
315 316 6.037172 GCTAGAGGAACGAATTTTCAATAGCA 59.963 38.462 0.00 0.00 35.04 3.49
316 317 7.254932 GCTAGAGGAACGAATTTTCAATAGCAT 60.255 37.037 0.00 0.00 35.04 3.79
317 318 9.261180 CTAGAGGAACGAATTTTCAATAGCATA 57.739 33.333 0.00 0.00 0.00 3.14
318 319 8.506168 AGAGGAACGAATTTTCAATAGCATAA 57.494 30.769 0.00 0.00 0.00 1.90
319 320 8.398665 AGAGGAACGAATTTTCAATAGCATAAC 58.601 33.333 0.00 0.00 0.00 1.89
320 321 8.281212 AGGAACGAATTTTCAATAGCATAACT 57.719 30.769 0.00 0.00 0.00 2.24
321 322 8.739972 AGGAACGAATTTTCAATAGCATAACTT 58.260 29.630 0.00 0.00 0.00 2.66
322 323 8.798153 GGAACGAATTTTCAATAGCATAACTTG 58.202 33.333 0.00 0.00 0.00 3.16
323 324 8.687824 AACGAATTTTCAATAGCATAACTTGG 57.312 30.769 0.00 0.00 0.00 3.61
324 325 7.257722 ACGAATTTTCAATAGCATAACTTGGG 58.742 34.615 0.00 0.00 0.00 4.12
325 326 6.198966 CGAATTTTCAATAGCATAACTTGGGC 59.801 38.462 0.00 0.00 0.00 5.36
326 327 6.796785 ATTTTCAATAGCATAACTTGGGCT 57.203 33.333 0.00 0.00 41.51 5.19
327 328 5.835113 TTTCAATAGCATAACTTGGGCTC 57.165 39.130 0.00 0.00 39.01 4.70
328 329 3.820557 TCAATAGCATAACTTGGGCTCC 58.179 45.455 0.00 0.00 39.01 4.70
329 330 3.459598 TCAATAGCATAACTTGGGCTCCT 59.540 43.478 0.00 0.00 39.01 3.69
330 331 4.658435 TCAATAGCATAACTTGGGCTCCTA 59.342 41.667 0.00 0.00 39.01 2.94
331 332 4.899352 ATAGCATAACTTGGGCTCCTAG 57.101 45.455 0.00 2.13 39.01 3.02
332 333 2.764269 AGCATAACTTGGGCTCCTAGA 58.236 47.619 9.06 0.00 30.74 2.43
333 334 3.115390 AGCATAACTTGGGCTCCTAGAA 58.885 45.455 9.06 0.00 30.74 2.10
334 335 3.718956 AGCATAACTTGGGCTCCTAGAAT 59.281 43.478 9.06 1.58 30.74 2.40
335 336 4.907875 AGCATAACTTGGGCTCCTAGAATA 59.092 41.667 9.06 3.79 30.74 1.75
336 337 5.549619 AGCATAACTTGGGCTCCTAGAATAT 59.450 40.000 9.06 5.41 30.74 1.28
337 338 5.645497 GCATAACTTGGGCTCCTAGAATATG 59.355 44.000 17.13 17.13 35.45 1.78
338 339 4.713792 AACTTGGGCTCCTAGAATATGG 57.286 45.455 9.06 0.00 31.18 2.74
339 340 2.373502 ACTTGGGCTCCTAGAATATGGC 59.626 50.000 9.06 0.00 31.18 4.40
340 341 0.976641 TGGGCTCCTAGAATATGGCG 59.023 55.000 0.00 0.00 0.00 5.69
341 342 0.391793 GGGCTCCTAGAATATGGCGC 60.392 60.000 0.00 0.00 33.70 6.53
342 343 0.391793 GGCTCCTAGAATATGGCGCC 60.392 60.000 22.73 22.73 45.31 6.53
343 344 0.391793 GCTCCTAGAATATGGCGCCC 60.392 60.000 26.77 7.94 0.00 6.13
344 345 1.270907 CTCCTAGAATATGGCGCCCT 58.729 55.000 26.77 18.16 0.00 5.19
345 346 1.625818 CTCCTAGAATATGGCGCCCTT 59.374 52.381 26.77 15.12 0.00 3.95
346 347 1.347707 TCCTAGAATATGGCGCCCTTG 59.652 52.381 26.77 13.75 0.00 3.61
347 348 1.611673 CCTAGAATATGGCGCCCTTGG 60.612 57.143 26.77 18.94 0.00 3.61
348 349 0.400213 TAGAATATGGCGCCCTTGGG 59.600 55.000 26.77 0.32 0.00 4.12
349 350 1.150536 GAATATGGCGCCCTTGGGA 59.849 57.895 26.77 3.54 0.00 4.37
350 351 1.152756 AATATGGCGCCCTTGGGAC 60.153 57.895 26.77 0.00 0.00 4.46
352 353 1.932156 ATATGGCGCCCTTGGGACAA 61.932 55.000 26.77 0.73 46.73 3.18
353 354 1.932156 TATGGCGCCCTTGGGACAAT 61.932 55.000 26.77 9.84 46.73 2.71
354 355 3.808692 TATGGCGCCCTTGGGACAATC 62.809 57.143 26.77 0.00 46.73 2.67
375 376 6.610075 ATCTATTTGATTGCAGGGTTTTGT 57.390 33.333 0.00 0.00 29.59 2.83
376 377 6.418057 TCTATTTGATTGCAGGGTTTTGTT 57.582 33.333 0.00 0.00 0.00 2.83
377 378 6.454795 TCTATTTGATTGCAGGGTTTTGTTC 58.545 36.000 0.00 0.00 0.00 3.18
378 379 3.467374 TTGATTGCAGGGTTTTGTTCC 57.533 42.857 0.00 0.00 0.00 3.62
379 380 1.339610 TGATTGCAGGGTTTTGTTCCG 59.660 47.619 0.00 0.00 0.00 4.30
380 381 1.611491 GATTGCAGGGTTTTGTTCCGA 59.389 47.619 0.00 0.00 0.00 4.55
381 382 1.475403 TTGCAGGGTTTTGTTCCGAA 58.525 45.000 0.00 0.00 0.00 4.30
382 383 1.028905 TGCAGGGTTTTGTTCCGAAG 58.971 50.000 0.00 0.00 0.00 3.79
383 384 0.318699 GCAGGGTTTTGTTCCGAAGC 60.319 55.000 0.00 0.00 0.00 3.86
384 385 1.028905 CAGGGTTTTGTTCCGAAGCA 58.971 50.000 0.00 0.00 0.00 3.91
385 386 1.407258 CAGGGTTTTGTTCCGAAGCAA 59.593 47.619 0.00 0.00 0.00 3.91
386 387 2.104170 AGGGTTTTGTTCCGAAGCAAA 58.896 42.857 0.00 5.36 0.00 3.68
387 388 2.100749 AGGGTTTTGTTCCGAAGCAAAG 59.899 45.455 8.11 0.00 0.00 2.77
388 389 2.100087 GGGTTTTGTTCCGAAGCAAAGA 59.900 45.455 8.11 0.00 0.00 2.52
389 390 3.243737 GGGTTTTGTTCCGAAGCAAAGAT 60.244 43.478 8.11 0.00 0.00 2.40
390 391 4.022676 GGGTTTTGTTCCGAAGCAAAGATA 60.023 41.667 8.11 0.00 0.00 1.98
391 392 5.336451 GGGTTTTGTTCCGAAGCAAAGATAT 60.336 40.000 8.11 0.00 0.00 1.63
392 393 5.800438 GGTTTTGTTCCGAAGCAAAGATATC 59.200 40.000 0.00 0.00 0.00 1.63
393 394 5.560966 TTTGTTCCGAAGCAAAGATATCC 57.439 39.130 0.00 0.00 0.00 2.59
394 395 3.194861 TGTTCCGAAGCAAAGATATCCG 58.805 45.455 0.00 0.00 0.00 4.18
395 396 1.865865 TCCGAAGCAAAGATATCCGC 58.134 50.000 0.00 0.02 0.00 5.54
396 397 1.138069 TCCGAAGCAAAGATATCCGCA 59.862 47.619 10.87 0.00 0.00 5.69
397 398 1.528586 CCGAAGCAAAGATATCCGCAG 59.471 52.381 10.87 3.59 0.00 5.18
398 399 2.473816 CGAAGCAAAGATATCCGCAGA 58.526 47.619 10.87 0.00 0.00 4.26
399 400 2.474359 CGAAGCAAAGATATCCGCAGAG 59.526 50.000 10.87 0.20 0.00 3.35
400 401 2.540265 AGCAAAGATATCCGCAGAGG 57.460 50.000 10.87 0.00 42.97 3.69
401 402 0.871057 GCAAAGATATCCGCAGAGGC 59.129 55.000 0.00 0.00 40.77 4.70
402 403 1.542108 GCAAAGATATCCGCAGAGGCT 60.542 52.381 0.00 0.00 40.77 4.58
403 404 2.289072 GCAAAGATATCCGCAGAGGCTA 60.289 50.000 0.00 0.00 40.77 3.93
520 521 1.342819 GCTTCTCCACGAGGCTCATAT 59.657 52.381 15.95 0.00 41.20 1.78
563 564 5.841237 AGTATGTAACTGATGCCATACTCCT 59.159 40.000 5.56 0.00 43.93 3.69
588 589 2.234300 AAGCTCGAACGACCTTCAAA 57.766 45.000 0.00 0.00 0.00 2.69
1030 1031 2.238847 GATGCGGACTACCTGCACCA 62.239 60.000 0.19 0.00 43.73 4.17
1056 1057 5.006386 ACAGAAAGACCCTATGAAGCTTTG 58.994 41.667 0.00 0.00 0.00 2.77
1219 1221 1.550976 CCAAGGGACAGTCTCAGGTAC 59.449 57.143 2.43 0.00 0.00 3.34
1608 1610 1.690985 TCCATATCCGGTGTGGGCA 60.691 57.895 17.99 2.49 39.43 5.36
1640 1642 3.335786 TGAGAGGACCTTTCCCTAGTACA 59.664 47.826 9.47 0.00 44.10 2.90
2021 2023 7.260603 GCACTTGCCATCTATCTTTATTGTTT 58.739 34.615 0.00 0.00 34.31 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.950836 GCACGGCCATGCATAACATA 59.049 50.000 20.95 0.00 45.39 2.29
1 2 1.735360 GCACGGCCATGCATAACAT 59.265 52.632 20.95 0.00 45.39 2.71
19 20 2.635915 TGGTTACCGATATGCCCTTAGG 59.364 50.000 0.00 0.00 0.00 2.69
20 21 4.062991 GTTGGTTACCGATATGCCCTTAG 58.937 47.826 0.00 0.00 0.00 2.18
21 22 3.455177 TGTTGGTTACCGATATGCCCTTA 59.545 43.478 0.00 0.00 0.00 2.69
22 23 2.240160 TGTTGGTTACCGATATGCCCTT 59.760 45.455 0.00 0.00 0.00 3.95
23 24 1.841277 TGTTGGTTACCGATATGCCCT 59.159 47.619 0.00 0.00 0.00 5.19
24 25 2.335316 TGTTGGTTACCGATATGCCC 57.665 50.000 0.00 0.00 0.00 5.36
25 26 3.275999 AGTTGTTGGTTACCGATATGCC 58.724 45.455 0.00 0.00 0.00 4.40
26 27 5.813672 TCTTAGTTGTTGGTTACCGATATGC 59.186 40.000 0.00 0.00 0.00 3.14
27 28 9.537192 TTATCTTAGTTGTTGGTTACCGATATG 57.463 33.333 0.00 0.00 0.00 1.78
28 29 9.760077 CTTATCTTAGTTGTTGGTTACCGATAT 57.240 33.333 0.00 0.00 0.00 1.63
29 30 7.707893 GCTTATCTTAGTTGTTGGTTACCGATA 59.292 37.037 0.00 0.00 0.00 2.92
30 31 6.537660 GCTTATCTTAGTTGTTGGTTACCGAT 59.462 38.462 0.00 0.00 0.00 4.18
31 32 5.870978 GCTTATCTTAGTTGTTGGTTACCGA 59.129 40.000 0.00 0.00 0.00 4.69
32 33 5.640357 TGCTTATCTTAGTTGTTGGTTACCG 59.360 40.000 0.00 0.00 0.00 4.02
33 34 6.401796 CGTGCTTATCTTAGTTGTTGGTTACC 60.402 42.308 0.00 0.00 0.00 2.85
34 35 6.366877 TCGTGCTTATCTTAGTTGTTGGTTAC 59.633 38.462 0.00 0.00 0.00 2.50
35 36 6.457355 TCGTGCTTATCTTAGTTGTTGGTTA 58.543 36.000 0.00 0.00 0.00 2.85
36 37 5.302360 TCGTGCTTATCTTAGTTGTTGGTT 58.698 37.500 0.00 0.00 0.00 3.67
37 38 4.890088 TCGTGCTTATCTTAGTTGTTGGT 58.110 39.130 0.00 0.00 0.00 3.67
38 39 5.856126 TTCGTGCTTATCTTAGTTGTTGG 57.144 39.130 0.00 0.00 0.00 3.77
39 40 8.015087 TGATTTTCGTGCTTATCTTAGTTGTTG 58.985 33.333 0.00 0.00 0.00 3.33
40 41 8.094798 TGATTTTCGTGCTTATCTTAGTTGTT 57.905 30.769 0.00 0.00 0.00 2.83
41 42 7.667043 TGATTTTCGTGCTTATCTTAGTTGT 57.333 32.000 0.00 0.00 0.00 3.32
42 43 8.948853 TTTGATTTTCGTGCTTATCTTAGTTG 57.051 30.769 0.00 0.00 0.00 3.16
43 44 7.750903 GCTTTGATTTTCGTGCTTATCTTAGTT 59.249 33.333 0.00 0.00 0.00 2.24
44 45 7.119846 AGCTTTGATTTTCGTGCTTATCTTAGT 59.880 33.333 0.00 0.00 0.00 2.24
45 46 7.467623 AGCTTTGATTTTCGTGCTTATCTTAG 58.532 34.615 0.00 0.00 0.00 2.18
46 47 7.377766 AGCTTTGATTTTCGTGCTTATCTTA 57.622 32.000 0.00 0.00 0.00 2.10
47 48 6.259550 AGCTTTGATTTTCGTGCTTATCTT 57.740 33.333 0.00 0.00 0.00 2.40
48 49 5.886960 AGCTTTGATTTTCGTGCTTATCT 57.113 34.783 0.00 0.00 0.00 1.98
49 50 6.086222 TGAAGCTTTGATTTTCGTGCTTATC 58.914 36.000 0.00 0.00 40.26 1.75
50 51 6.012658 TGAAGCTTTGATTTTCGTGCTTAT 57.987 33.333 0.00 0.00 40.26 1.73
51 52 5.431420 TGAAGCTTTGATTTTCGTGCTTA 57.569 34.783 0.00 0.00 40.26 3.09
52 53 4.305989 TGAAGCTTTGATTTTCGTGCTT 57.694 36.364 0.00 0.00 42.42 3.91
53 54 3.988379 TGAAGCTTTGATTTTCGTGCT 57.012 38.095 0.00 0.00 0.00 4.40
54 55 6.689178 TTATTGAAGCTTTGATTTTCGTGC 57.311 33.333 0.00 0.00 0.00 5.34
55 56 9.356929 GTTTTTATTGAAGCTTTGATTTTCGTG 57.643 29.630 0.00 0.00 0.00 4.35
56 57 9.092876 TGTTTTTATTGAAGCTTTGATTTTCGT 57.907 25.926 0.00 0.00 0.00 3.85
57 58 9.571804 CTGTTTTTATTGAAGCTTTGATTTTCG 57.428 29.630 0.00 0.00 0.00 3.46
63 64 9.677567 GTGTATCTGTTTTTATTGAAGCTTTGA 57.322 29.630 0.00 0.00 0.00 2.69
64 65 8.915654 GGTGTATCTGTTTTTATTGAAGCTTTG 58.084 33.333 0.00 0.00 0.00 2.77
65 66 8.860088 AGGTGTATCTGTTTTTATTGAAGCTTT 58.140 29.630 0.00 0.00 0.00 3.51
66 67 8.409358 AGGTGTATCTGTTTTTATTGAAGCTT 57.591 30.769 0.00 0.00 0.00 3.74
67 68 9.515226 TTAGGTGTATCTGTTTTTATTGAAGCT 57.485 29.630 0.00 0.00 0.00 3.74
74 75 9.241317 CGACGTATTAGGTGTATCTGTTTTTAT 57.759 33.333 0.00 0.00 0.00 1.40
75 76 8.458052 TCGACGTATTAGGTGTATCTGTTTTTA 58.542 33.333 0.00 0.00 0.00 1.52
76 77 7.315142 TCGACGTATTAGGTGTATCTGTTTTT 58.685 34.615 0.00 0.00 0.00 1.94
77 78 6.855836 TCGACGTATTAGGTGTATCTGTTTT 58.144 36.000 0.00 0.00 0.00 2.43
78 79 6.441093 TCGACGTATTAGGTGTATCTGTTT 57.559 37.500 0.00 0.00 0.00 2.83
79 80 6.441093 TTCGACGTATTAGGTGTATCTGTT 57.559 37.500 0.00 0.00 0.00 3.16
80 81 6.094603 AGTTTCGACGTATTAGGTGTATCTGT 59.905 38.462 0.00 0.00 0.00 3.41
81 82 6.493116 AGTTTCGACGTATTAGGTGTATCTG 58.507 40.000 0.00 0.00 0.00 2.90
82 83 6.317140 TGAGTTTCGACGTATTAGGTGTATCT 59.683 38.462 0.00 0.00 0.00 1.98
83 84 6.489675 TGAGTTTCGACGTATTAGGTGTATC 58.510 40.000 0.00 0.00 0.00 2.24
84 85 6.441093 TGAGTTTCGACGTATTAGGTGTAT 57.559 37.500 0.00 0.00 0.00 2.29
85 86 5.878332 TGAGTTTCGACGTATTAGGTGTA 57.122 39.130 0.00 0.00 0.00 2.90
86 87 4.771590 TGAGTTTCGACGTATTAGGTGT 57.228 40.909 0.00 0.00 0.00 4.16
87 88 5.500290 GCAATGAGTTTCGACGTATTAGGTG 60.500 44.000 0.00 0.00 0.00 4.00
88 89 4.565564 GCAATGAGTTTCGACGTATTAGGT 59.434 41.667 0.00 0.00 0.00 3.08
89 90 4.025979 GGCAATGAGTTTCGACGTATTAGG 60.026 45.833 0.00 0.00 0.00 2.69
90 91 4.025979 GGGCAATGAGTTTCGACGTATTAG 60.026 45.833 0.00 0.00 0.00 1.73
91 92 3.866910 GGGCAATGAGTTTCGACGTATTA 59.133 43.478 0.00 0.00 0.00 0.98
92 93 2.676342 GGGCAATGAGTTTCGACGTATT 59.324 45.455 0.00 0.00 0.00 1.89
93 94 2.277084 GGGCAATGAGTTTCGACGTAT 58.723 47.619 0.00 0.00 0.00 3.06
94 95 1.001068 TGGGCAATGAGTTTCGACGTA 59.999 47.619 0.00 0.00 0.00 3.57
95 96 0.250124 TGGGCAATGAGTTTCGACGT 60.250 50.000 0.00 0.00 0.00 4.34
96 97 0.871722 TTGGGCAATGAGTTTCGACG 59.128 50.000 0.00 0.00 0.00 5.12
97 98 1.200020 CCTTGGGCAATGAGTTTCGAC 59.800 52.381 0.00 0.00 0.00 4.20
98 99 1.533625 CCTTGGGCAATGAGTTTCGA 58.466 50.000 0.00 0.00 0.00 3.71
99 100 0.527565 CCCTTGGGCAATGAGTTTCG 59.472 55.000 0.00 0.00 0.00 3.46
100 101 1.632589 ACCCTTGGGCAATGAGTTTC 58.367 50.000 5.46 0.00 0.00 2.78
101 102 2.990740 TACCCTTGGGCAATGAGTTT 57.009 45.000 5.46 0.00 0.00 2.66
102 103 3.785887 TCTATACCCTTGGGCAATGAGTT 59.214 43.478 5.46 0.00 0.00 3.01
103 104 3.393687 TCTATACCCTTGGGCAATGAGT 58.606 45.455 5.46 0.00 0.00 3.41
104 105 4.437682 TTCTATACCCTTGGGCAATGAG 57.562 45.455 5.46 0.00 0.00 2.90
105 106 4.476846 TCTTTCTATACCCTTGGGCAATGA 59.523 41.667 5.46 0.00 0.00 2.57
106 107 4.580580 GTCTTTCTATACCCTTGGGCAATG 59.419 45.833 5.46 0.00 0.00 2.82
107 108 4.686122 CGTCTTTCTATACCCTTGGGCAAT 60.686 45.833 5.46 2.67 0.00 3.56
108 109 3.370103 CGTCTTTCTATACCCTTGGGCAA 60.370 47.826 5.46 0.00 0.00 4.52
109 110 2.169769 CGTCTTTCTATACCCTTGGGCA 59.830 50.000 5.46 0.00 0.00 5.36
110 111 2.484947 CCGTCTTTCTATACCCTTGGGC 60.485 54.545 5.46 0.00 0.00 5.36
111 112 2.770232 ACCGTCTTTCTATACCCTTGGG 59.230 50.000 3.77 3.77 0.00 4.12
112 113 4.482952 AACCGTCTTTCTATACCCTTGG 57.517 45.455 0.00 0.00 0.00 3.61
113 114 4.874396 GGAAACCGTCTTTCTATACCCTTG 59.126 45.833 3.58 0.00 0.00 3.61
114 115 4.533311 TGGAAACCGTCTTTCTATACCCTT 59.467 41.667 3.58 0.00 0.00 3.95
115 116 4.081254 GTGGAAACCGTCTTTCTATACCCT 60.081 45.833 3.58 0.00 0.00 4.34
116 117 4.186926 GTGGAAACCGTCTTTCTATACCC 58.813 47.826 3.58 0.00 0.00 3.69
117 118 4.824289 TGTGGAAACCGTCTTTCTATACC 58.176 43.478 3.58 0.00 0.00 2.73
118 119 6.103997 TGATGTGGAAACCGTCTTTCTATAC 58.896 40.000 3.58 2.61 0.00 1.47
119 120 6.288941 TGATGTGGAAACCGTCTTTCTATA 57.711 37.500 3.58 0.00 0.00 1.31
120 121 5.160607 TGATGTGGAAACCGTCTTTCTAT 57.839 39.130 3.58 0.00 0.00 1.98
121 122 4.610605 TGATGTGGAAACCGTCTTTCTA 57.389 40.909 3.58 0.00 0.00 2.10
122 123 3.485463 TGATGTGGAAACCGTCTTTCT 57.515 42.857 3.58 0.00 0.00 2.52
123 124 4.561735 TTTGATGTGGAAACCGTCTTTC 57.438 40.909 0.00 0.00 0.00 2.62
124 125 4.993029 TTTTGATGTGGAAACCGTCTTT 57.007 36.364 0.00 0.00 0.00 2.52
125 126 4.158764 TGTTTTTGATGTGGAAACCGTCTT 59.841 37.500 0.00 0.00 33.49 3.01
126 127 3.697045 TGTTTTTGATGTGGAAACCGTCT 59.303 39.130 0.00 0.00 33.49 4.18
127 128 4.035278 TGTTTTTGATGTGGAAACCGTC 57.965 40.909 0.00 0.00 33.49 4.79
128 129 4.177783 GTTGTTTTTGATGTGGAAACCGT 58.822 39.130 0.00 0.00 33.49 4.83
129 130 4.177026 TGTTGTTTTTGATGTGGAAACCG 58.823 39.130 0.00 0.00 33.49 4.44
130 131 6.487689 TTTGTTGTTTTTGATGTGGAAACC 57.512 33.333 0.00 0.00 33.49 3.27
131 132 7.058920 CGTTTTTGTTGTTTTTGATGTGGAAAC 59.941 33.333 0.00 0.00 34.67 2.78
132 133 7.042051 TCGTTTTTGTTGTTTTTGATGTGGAAA 60.042 29.630 0.00 0.00 0.00 3.13
133 134 6.423905 TCGTTTTTGTTGTTTTTGATGTGGAA 59.576 30.769 0.00 0.00 0.00 3.53
134 135 5.926542 TCGTTTTTGTTGTTTTTGATGTGGA 59.073 32.000 0.00 0.00 0.00 4.02
135 136 6.158175 TCGTTTTTGTTGTTTTTGATGTGG 57.842 33.333 0.00 0.00 0.00 4.17
136 137 5.727592 GCTCGTTTTTGTTGTTTTTGATGTG 59.272 36.000 0.00 0.00 0.00 3.21
137 138 5.443955 CGCTCGTTTTTGTTGTTTTTGATGT 60.444 36.000 0.00 0.00 0.00 3.06
138 139 4.949104 CGCTCGTTTTTGTTGTTTTTGATG 59.051 37.500 0.00 0.00 0.00 3.07
139 140 4.491763 GCGCTCGTTTTTGTTGTTTTTGAT 60.492 37.500 0.00 0.00 0.00 2.57
140 141 3.181539 GCGCTCGTTTTTGTTGTTTTTGA 60.182 39.130 0.00 0.00 0.00 2.69
141 142 3.080739 GCGCTCGTTTTTGTTGTTTTTG 58.919 40.909 0.00 0.00 0.00 2.44
142 143 2.731976 TGCGCTCGTTTTTGTTGTTTTT 59.268 36.364 9.73 0.00 0.00 1.94
143 144 2.329379 TGCGCTCGTTTTTGTTGTTTT 58.671 38.095 9.73 0.00 0.00 2.43
144 145 1.983972 TGCGCTCGTTTTTGTTGTTT 58.016 40.000 9.73 0.00 0.00 2.83
145 146 1.983972 TTGCGCTCGTTTTTGTTGTT 58.016 40.000 9.73 0.00 0.00 2.83
146 147 1.651631 GTTTGCGCTCGTTTTTGTTGT 59.348 42.857 9.73 0.00 0.00 3.32
147 148 1.651138 TGTTTGCGCTCGTTTTTGTTG 59.349 42.857 9.73 0.00 0.00 3.33
148 149 1.983972 TGTTTGCGCTCGTTTTTGTT 58.016 40.000 9.73 0.00 0.00 2.83
149 150 2.202295 ATGTTTGCGCTCGTTTTTGT 57.798 40.000 9.73 0.00 0.00 2.83
150 151 5.983790 TTATATGTTTGCGCTCGTTTTTG 57.016 34.783 9.73 0.00 0.00 2.44
151 152 6.413818 GCTATTATATGTTTGCGCTCGTTTTT 59.586 34.615 9.73 0.00 0.00 1.94
152 153 5.907391 GCTATTATATGTTTGCGCTCGTTTT 59.093 36.000 9.73 0.00 0.00 2.43
153 154 5.440685 GCTATTATATGTTTGCGCTCGTTT 58.559 37.500 9.73 0.00 0.00 3.60
154 155 4.376008 CGCTATTATATGTTTGCGCTCGTT 60.376 41.667 9.73 0.00 37.13 3.85
155 156 3.121279 CGCTATTATATGTTTGCGCTCGT 59.879 43.478 9.73 3.34 37.13 4.18
156 157 3.121279 ACGCTATTATATGTTTGCGCTCG 59.879 43.478 9.73 0.00 46.03 5.03
157 158 4.647291 ACGCTATTATATGTTTGCGCTC 57.353 40.909 9.73 0.00 46.03 5.03
158 159 6.453791 CGAATACGCTATTATATGTTTGCGCT 60.454 38.462 9.73 0.00 46.03 5.92
159 160 5.666878 CGAATACGCTATTATATGTTTGCGC 59.333 40.000 0.00 0.00 46.03 6.09
161 162 7.285783 TCCGAATACGCTATTATATGTTTGC 57.714 36.000 0.00 0.00 38.29 3.68
164 165 9.431887 ACAATTCCGAATACGCTATTATATGTT 57.568 29.630 0.00 0.00 38.29 2.71
165 166 8.997621 ACAATTCCGAATACGCTATTATATGT 57.002 30.769 0.00 0.00 38.29 2.29
167 168 9.525409 GGTACAATTCCGAATACGCTATTATAT 57.475 33.333 0.00 0.00 38.29 0.86
168 169 7.975616 GGGTACAATTCCGAATACGCTATTATA 59.024 37.037 0.00 0.00 38.29 0.98
169 170 6.815142 GGGTACAATTCCGAATACGCTATTAT 59.185 38.462 0.00 0.00 38.29 1.28
170 171 6.158598 GGGTACAATTCCGAATACGCTATTA 58.841 40.000 0.00 0.00 38.29 0.98
171 172 4.992951 GGGTACAATTCCGAATACGCTATT 59.007 41.667 0.00 0.00 38.29 1.73
172 173 4.039488 TGGGTACAATTCCGAATACGCTAT 59.961 41.667 9.64 0.00 38.29 2.97
173 174 3.384146 TGGGTACAATTCCGAATACGCTA 59.616 43.478 9.64 0.00 38.29 4.26
174 175 2.168936 TGGGTACAATTCCGAATACGCT 59.831 45.455 9.64 0.00 38.29 5.07
175 176 2.553086 TGGGTACAATTCCGAATACGC 58.447 47.619 0.00 0.00 38.29 4.42
176 177 3.001939 GCTTGGGTACAATTCCGAATACG 59.998 47.826 0.00 0.00 35.73 3.06
177 178 3.314357 GGCTTGGGTACAATTCCGAATAC 59.686 47.826 0.00 0.00 35.73 1.89
178 179 3.547746 GGCTTGGGTACAATTCCGAATA 58.452 45.455 0.00 0.00 35.73 1.75
179 180 2.375146 GGCTTGGGTACAATTCCGAAT 58.625 47.619 0.00 0.00 35.73 3.34
180 181 1.614850 GGGCTTGGGTACAATTCCGAA 60.615 52.381 0.00 0.00 35.73 4.30
181 182 0.034863 GGGCTTGGGTACAATTCCGA 60.035 55.000 0.00 0.00 35.73 4.55
182 183 1.035385 GGGGCTTGGGTACAATTCCG 61.035 60.000 0.00 0.00 35.73 4.30
183 184 0.335019 AGGGGCTTGGGTACAATTCC 59.665 55.000 0.00 0.00 35.73 3.01
184 185 1.685180 GGAGGGGCTTGGGTACAATTC 60.685 57.143 0.00 0.00 35.73 2.17
185 186 0.335019 GGAGGGGCTTGGGTACAATT 59.665 55.000 0.00 0.00 35.73 2.32
186 187 1.580994 GGGAGGGGCTTGGGTACAAT 61.581 60.000 0.00 0.00 35.73 2.71
187 188 2.235761 GGGAGGGGCTTGGGTACAA 61.236 63.158 0.00 0.00 34.87 2.41
188 189 2.612746 GGGAGGGGCTTGGGTACA 60.613 66.667 0.00 0.00 0.00 2.90
189 190 2.006991 ATGGGAGGGGCTTGGGTAC 61.007 63.158 0.00 0.00 0.00 3.34
190 191 2.006415 CATGGGAGGGGCTTGGGTA 61.006 63.158 0.00 0.00 0.00 3.69
191 192 3.350163 CATGGGAGGGGCTTGGGT 61.350 66.667 0.00 0.00 0.00 4.51
192 193 4.147587 CCATGGGAGGGGCTTGGG 62.148 72.222 2.85 0.00 0.00 4.12
193 194 4.147587 CCCATGGGAGGGGCTTGG 62.148 72.222 28.27 0.00 45.60 3.61
212 213 8.521176 GCTTTCTAGTTATGAATCGGGTATAGA 58.479 37.037 0.00 0.00 0.00 1.98
213 214 8.524487 AGCTTTCTAGTTATGAATCGGGTATAG 58.476 37.037 0.00 0.00 0.00 1.31
214 215 8.418597 AGCTTTCTAGTTATGAATCGGGTATA 57.581 34.615 0.00 0.00 0.00 1.47
215 216 7.304497 AGCTTTCTAGTTATGAATCGGGTAT 57.696 36.000 0.00 0.00 0.00 2.73
216 217 6.726490 AGCTTTCTAGTTATGAATCGGGTA 57.274 37.500 0.00 0.00 0.00 3.69
217 218 5.615925 AGCTTTCTAGTTATGAATCGGGT 57.384 39.130 0.00 0.00 0.00 5.28
218 219 6.284459 AGAAGCTTTCTAGTTATGAATCGGG 58.716 40.000 0.00 0.00 38.49 5.14
219 220 7.168972 CAGAGAAGCTTTCTAGTTATGAATCGG 59.831 40.741 0.00 0.00 40.87 4.18
220 221 7.168972 CCAGAGAAGCTTTCTAGTTATGAATCG 59.831 40.741 0.00 0.00 40.87 3.34
221 222 7.984617 ACCAGAGAAGCTTTCTAGTTATGAATC 59.015 37.037 0.00 0.00 40.87 2.52
222 223 7.856415 ACCAGAGAAGCTTTCTAGTTATGAAT 58.144 34.615 0.00 0.00 40.87 2.57
223 224 7.246171 ACCAGAGAAGCTTTCTAGTTATGAA 57.754 36.000 0.00 0.00 40.87 2.57
224 225 6.127310 GGACCAGAGAAGCTTTCTAGTTATGA 60.127 42.308 0.00 0.00 40.87 2.15
225 226 6.045955 GGACCAGAGAAGCTTTCTAGTTATG 58.954 44.000 0.00 0.00 40.87 1.90
226 227 5.961421 AGGACCAGAGAAGCTTTCTAGTTAT 59.039 40.000 0.00 0.00 40.87 1.89
227 228 5.334421 AGGACCAGAGAAGCTTTCTAGTTA 58.666 41.667 0.00 0.00 40.87 2.24
228 229 4.164204 AGGACCAGAGAAGCTTTCTAGTT 58.836 43.478 0.00 0.00 40.87 2.24
229 230 3.785364 AGGACCAGAGAAGCTTTCTAGT 58.215 45.455 0.00 5.02 40.87 2.57
230 231 4.221703 TGAAGGACCAGAGAAGCTTTCTAG 59.778 45.833 0.00 1.75 40.87 2.43
231 232 4.021016 GTGAAGGACCAGAGAAGCTTTCTA 60.021 45.833 0.00 0.00 40.87 2.10
232 233 2.975489 TGAAGGACCAGAGAAGCTTTCT 59.025 45.455 0.00 2.81 44.21 2.52
233 234 3.070748 GTGAAGGACCAGAGAAGCTTTC 58.929 50.000 0.00 0.24 0.00 2.62
234 235 2.708325 AGTGAAGGACCAGAGAAGCTTT 59.292 45.455 0.00 0.00 0.00 3.51
235 236 2.334023 AGTGAAGGACCAGAGAAGCTT 58.666 47.619 0.00 0.00 0.00 3.74
236 237 2.022718 AGTGAAGGACCAGAGAAGCT 57.977 50.000 0.00 0.00 0.00 3.74
237 238 3.591023 GTTAGTGAAGGACCAGAGAAGC 58.409 50.000 0.00 0.00 0.00 3.86
238 239 3.367498 CGGTTAGTGAAGGACCAGAGAAG 60.367 52.174 0.00 0.00 32.95 2.85
239 240 2.561419 CGGTTAGTGAAGGACCAGAGAA 59.439 50.000 0.00 0.00 32.95 2.87
240 241 2.168496 CGGTTAGTGAAGGACCAGAGA 58.832 52.381 0.00 0.00 32.95 3.10
241 242 1.204941 CCGGTTAGTGAAGGACCAGAG 59.795 57.143 0.00 0.00 32.95 3.35
242 243 1.263356 CCGGTTAGTGAAGGACCAGA 58.737 55.000 0.00 0.00 32.95 3.86
243 244 0.249398 CCCGGTTAGTGAAGGACCAG 59.751 60.000 0.00 0.00 32.95 4.00
244 245 1.196104 CCCCGGTTAGTGAAGGACCA 61.196 60.000 0.00 0.00 32.95 4.02
245 246 1.600638 CCCCGGTTAGTGAAGGACC 59.399 63.158 0.00 0.00 0.00 4.46
246 247 1.078637 GCCCCGGTTAGTGAAGGAC 60.079 63.158 0.00 0.00 0.00 3.85
247 248 0.041535 TAGCCCCGGTTAGTGAAGGA 59.958 55.000 0.00 0.00 0.00 3.36
248 249 0.906775 TTAGCCCCGGTTAGTGAAGG 59.093 55.000 0.00 0.00 0.00 3.46
249 250 2.773993 TTTAGCCCCGGTTAGTGAAG 57.226 50.000 0.00 0.00 0.00 3.02
250 251 2.372837 ACTTTTAGCCCCGGTTAGTGAA 59.627 45.455 0.00 0.00 0.00 3.18
251 252 1.980036 ACTTTTAGCCCCGGTTAGTGA 59.020 47.619 0.00 0.00 0.00 3.41
252 253 2.353323 GACTTTTAGCCCCGGTTAGTG 58.647 52.381 0.00 0.00 0.00 2.74
253 254 1.280133 GGACTTTTAGCCCCGGTTAGT 59.720 52.381 0.00 0.00 0.00 2.24
254 255 1.558294 AGGACTTTTAGCCCCGGTTAG 59.442 52.381 0.00 0.00 0.00 2.34
255 256 1.279846 CAGGACTTTTAGCCCCGGTTA 59.720 52.381 0.00 0.00 0.00 2.85
256 257 0.037734 CAGGACTTTTAGCCCCGGTT 59.962 55.000 0.00 0.00 0.00 4.44
257 258 1.683441 CAGGACTTTTAGCCCCGGT 59.317 57.895 0.00 0.00 0.00 5.28
258 259 1.749258 GCAGGACTTTTAGCCCCGG 60.749 63.158 0.00 0.00 0.00 5.73
259 260 0.744771 GAGCAGGACTTTTAGCCCCG 60.745 60.000 0.00 0.00 0.00 5.73
260 261 0.328258 TGAGCAGGACTTTTAGCCCC 59.672 55.000 0.00 0.00 0.00 5.80
261 262 2.200373 TTGAGCAGGACTTTTAGCCC 57.800 50.000 0.00 0.00 0.00 5.19
262 263 2.229062 GGTTTGAGCAGGACTTTTAGCC 59.771 50.000 0.00 0.00 0.00 3.93
263 264 2.095718 CGGTTTGAGCAGGACTTTTAGC 60.096 50.000 0.00 0.00 0.00 3.09
264 265 2.484264 CCGGTTTGAGCAGGACTTTTAG 59.516 50.000 0.00 0.00 0.00 1.85
265 266 2.105134 TCCGGTTTGAGCAGGACTTTTA 59.895 45.455 0.00 0.00 0.00 1.52
266 267 1.133915 TCCGGTTTGAGCAGGACTTTT 60.134 47.619 0.00 0.00 0.00 2.27
267 268 0.472471 TCCGGTTTGAGCAGGACTTT 59.528 50.000 0.00 0.00 0.00 2.66
268 269 0.472471 TTCCGGTTTGAGCAGGACTT 59.528 50.000 0.00 0.00 31.69 3.01
269 270 0.250338 GTTCCGGTTTGAGCAGGACT 60.250 55.000 0.00 0.00 31.69 3.85
270 271 0.250338 AGTTCCGGTTTGAGCAGGAC 60.250 55.000 0.00 0.00 31.69 3.85
271 272 0.250295 CAGTTCCGGTTTGAGCAGGA 60.250 55.000 0.00 0.00 0.00 3.86
272 273 1.856265 GCAGTTCCGGTTTGAGCAGG 61.856 60.000 0.00 0.00 0.00 4.85
273 274 0.886490 AGCAGTTCCGGTTTGAGCAG 60.886 55.000 0.00 0.00 0.00 4.24
274 275 0.394938 TAGCAGTTCCGGTTTGAGCA 59.605 50.000 0.00 0.00 0.00 4.26
275 276 1.079503 CTAGCAGTTCCGGTTTGAGC 58.920 55.000 0.00 0.51 0.00 4.26
276 277 2.611518 CTCTAGCAGTTCCGGTTTGAG 58.388 52.381 0.00 0.00 0.00 3.02
277 278 1.275291 CCTCTAGCAGTTCCGGTTTGA 59.725 52.381 0.00 0.00 0.00 2.69
278 279 1.275291 TCCTCTAGCAGTTCCGGTTTG 59.725 52.381 0.00 0.00 0.00 2.93
279 280 1.640917 TCCTCTAGCAGTTCCGGTTT 58.359 50.000 0.00 0.00 0.00 3.27
280 281 1.275573 GTTCCTCTAGCAGTTCCGGTT 59.724 52.381 0.00 0.00 0.00 4.44
281 282 0.896226 GTTCCTCTAGCAGTTCCGGT 59.104 55.000 0.00 0.00 0.00 5.28
282 283 0.179134 CGTTCCTCTAGCAGTTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
283 284 0.809385 TCGTTCCTCTAGCAGTTCCG 59.191 55.000 0.00 0.00 0.00 4.30
284 285 3.528597 ATTCGTTCCTCTAGCAGTTCC 57.471 47.619 0.00 0.00 0.00 3.62
285 286 5.408604 TGAAAATTCGTTCCTCTAGCAGTTC 59.591 40.000 0.00 0.00 0.00 3.01
286 287 5.305585 TGAAAATTCGTTCCTCTAGCAGTT 58.694 37.500 0.00 0.00 0.00 3.16
287 288 4.894784 TGAAAATTCGTTCCTCTAGCAGT 58.105 39.130 0.00 0.00 0.00 4.40
288 289 5.862924 TTGAAAATTCGTTCCTCTAGCAG 57.137 39.130 0.00 0.00 0.00 4.24
289 290 6.037172 GCTATTGAAAATTCGTTCCTCTAGCA 59.963 38.462 0.00 0.00 32.99 3.49
290 291 6.037172 TGCTATTGAAAATTCGTTCCTCTAGC 59.963 38.462 0.00 0.00 33.17 3.42
291 292 7.539712 TGCTATTGAAAATTCGTTCCTCTAG 57.460 36.000 0.00 0.00 0.00 2.43
292 293 9.607988 TTATGCTATTGAAAATTCGTTCCTCTA 57.392 29.630 0.00 0.00 0.00 2.43
293 294 8.398665 GTTATGCTATTGAAAATTCGTTCCTCT 58.601 33.333 0.00 0.00 0.00 3.69
294 295 8.398665 AGTTATGCTATTGAAAATTCGTTCCTC 58.601 33.333 0.00 0.00 0.00 3.71
295 296 8.281212 AGTTATGCTATTGAAAATTCGTTCCT 57.719 30.769 0.00 0.00 0.00 3.36
296 297 8.798153 CAAGTTATGCTATTGAAAATTCGTTCC 58.202 33.333 0.00 0.00 0.00 3.62
297 298 8.798153 CCAAGTTATGCTATTGAAAATTCGTTC 58.202 33.333 0.00 0.00 0.00 3.95
298 299 7.759433 CCCAAGTTATGCTATTGAAAATTCGTT 59.241 33.333 0.00 0.00 0.00 3.85
299 300 7.257722 CCCAAGTTATGCTATTGAAAATTCGT 58.742 34.615 0.00 0.00 0.00 3.85
300 301 6.198966 GCCCAAGTTATGCTATTGAAAATTCG 59.801 38.462 0.00 0.00 0.00 3.34
301 302 7.267857 AGCCCAAGTTATGCTATTGAAAATTC 58.732 34.615 0.00 0.00 32.56 2.17
302 303 7.186570 AGCCCAAGTTATGCTATTGAAAATT 57.813 32.000 0.00 0.00 32.56 1.82
303 304 6.183360 GGAGCCCAAGTTATGCTATTGAAAAT 60.183 38.462 0.00 0.00 34.99 1.82
304 305 5.127031 GGAGCCCAAGTTATGCTATTGAAAA 59.873 40.000 0.00 0.00 34.99 2.29
305 306 4.644685 GGAGCCCAAGTTATGCTATTGAAA 59.355 41.667 0.00 0.00 34.99 2.69
306 307 4.079787 AGGAGCCCAAGTTATGCTATTGAA 60.080 41.667 0.00 0.00 34.99 2.69
307 308 3.459598 AGGAGCCCAAGTTATGCTATTGA 59.540 43.478 0.00 0.00 34.99 2.57
308 309 3.825328 AGGAGCCCAAGTTATGCTATTG 58.175 45.455 0.00 0.00 34.99 1.90
309 310 4.907875 TCTAGGAGCCCAAGTTATGCTATT 59.092 41.667 0.00 0.00 34.99 1.73
310 311 4.493618 TCTAGGAGCCCAAGTTATGCTAT 58.506 43.478 0.00 0.00 34.99 2.97
311 312 3.923648 TCTAGGAGCCCAAGTTATGCTA 58.076 45.455 0.00 0.00 34.99 3.49
312 313 2.764269 TCTAGGAGCCCAAGTTATGCT 58.236 47.619 0.00 0.00 38.24 3.79
313 314 3.560636 TTCTAGGAGCCCAAGTTATGC 57.439 47.619 0.00 0.00 0.00 3.14
314 315 6.176183 CCATATTCTAGGAGCCCAAGTTATG 58.824 44.000 0.00 0.00 0.00 1.90
315 316 5.280727 GCCATATTCTAGGAGCCCAAGTTAT 60.281 44.000 0.00 0.00 0.00 1.89
316 317 4.041691 GCCATATTCTAGGAGCCCAAGTTA 59.958 45.833 0.00 0.00 0.00 2.24
317 318 3.181439 GCCATATTCTAGGAGCCCAAGTT 60.181 47.826 0.00 0.00 0.00 2.66
318 319 2.373502 GCCATATTCTAGGAGCCCAAGT 59.626 50.000 0.00 0.00 0.00 3.16
319 320 2.613977 CGCCATATTCTAGGAGCCCAAG 60.614 54.545 0.00 0.00 0.00 3.61
320 321 1.347707 CGCCATATTCTAGGAGCCCAA 59.652 52.381 0.00 0.00 0.00 4.12
321 322 0.976641 CGCCATATTCTAGGAGCCCA 59.023 55.000 0.00 0.00 0.00 5.36
322 323 0.391793 GCGCCATATTCTAGGAGCCC 60.392 60.000 0.00 0.00 43.75 5.19
323 324 3.145228 GCGCCATATTCTAGGAGCC 57.855 57.895 0.00 0.00 43.75 4.70
325 326 1.270907 AGGGCGCCATATTCTAGGAG 58.729 55.000 30.85 0.00 0.00 3.69
326 327 1.347707 CAAGGGCGCCATATTCTAGGA 59.652 52.381 30.85 0.00 0.00 2.94
327 328 1.611673 CCAAGGGCGCCATATTCTAGG 60.612 57.143 30.85 13.07 0.00 3.02
328 329 1.611673 CCCAAGGGCGCCATATTCTAG 60.612 57.143 30.85 10.35 0.00 2.43
329 330 0.400213 CCCAAGGGCGCCATATTCTA 59.600 55.000 30.85 0.00 0.00 2.10
330 331 1.151450 CCCAAGGGCGCCATATTCT 59.849 57.895 30.85 13.15 0.00 2.40
331 332 1.150536 TCCCAAGGGCGCCATATTC 59.849 57.895 30.85 10.59 34.68 1.75
332 333 1.152756 GTCCCAAGGGCGCCATATT 60.153 57.895 30.85 16.95 34.68 1.28
333 334 1.932156 TTGTCCCAAGGGCGCCATAT 61.932 55.000 30.85 10.95 34.68 1.78
334 335 1.932156 ATTGTCCCAAGGGCGCCATA 61.932 55.000 30.85 3.85 34.68 2.74
335 336 3.301222 ATTGTCCCAAGGGCGCCAT 62.301 57.895 30.85 21.35 34.68 4.40
336 337 3.936772 GATTGTCCCAAGGGCGCCA 62.937 63.158 30.85 2.40 34.68 5.69
337 338 2.265467 TAGATTGTCCCAAGGGCGCC 62.265 60.000 21.18 21.18 34.68 6.53
338 339 0.179018 ATAGATTGTCCCAAGGGCGC 60.179 55.000 0.00 0.00 34.68 6.53
339 340 2.348411 AATAGATTGTCCCAAGGGCG 57.652 50.000 0.00 0.00 34.68 6.13
340 341 3.631250 TCAAATAGATTGTCCCAAGGGC 58.369 45.455 0.00 0.00 40.11 5.19
352 353 6.610075 ACAAAACCCTGCAATCAAATAGAT 57.390 33.333 0.00 0.00 39.09 1.98
353 354 6.418057 AACAAAACCCTGCAATCAAATAGA 57.582 33.333 0.00 0.00 0.00 1.98
354 355 5.639082 GGAACAAAACCCTGCAATCAAATAG 59.361 40.000 0.00 0.00 0.00 1.73
355 356 5.546526 GGAACAAAACCCTGCAATCAAATA 58.453 37.500 0.00 0.00 0.00 1.40
356 357 4.388485 GGAACAAAACCCTGCAATCAAAT 58.612 39.130 0.00 0.00 0.00 2.32
357 358 3.739519 CGGAACAAAACCCTGCAATCAAA 60.740 43.478 0.00 0.00 0.00 2.69
358 359 2.223923 CGGAACAAAACCCTGCAATCAA 60.224 45.455 0.00 0.00 0.00 2.57
359 360 1.339610 CGGAACAAAACCCTGCAATCA 59.660 47.619 0.00 0.00 0.00 2.57
360 361 1.611491 TCGGAACAAAACCCTGCAATC 59.389 47.619 0.00 0.00 0.00 2.67
361 362 1.698506 TCGGAACAAAACCCTGCAAT 58.301 45.000 0.00 0.00 0.00 3.56
362 363 1.407258 CTTCGGAACAAAACCCTGCAA 59.593 47.619 0.00 0.00 0.00 4.08
363 364 1.028905 CTTCGGAACAAAACCCTGCA 58.971 50.000 0.00 0.00 0.00 4.41
364 365 0.318699 GCTTCGGAACAAAACCCTGC 60.319 55.000 0.00 0.00 0.00 4.85
365 366 1.028905 TGCTTCGGAACAAAACCCTG 58.971 50.000 0.00 0.00 0.00 4.45
366 367 1.770294 TTGCTTCGGAACAAAACCCT 58.230 45.000 4.13 0.00 0.00 4.34
367 368 2.100087 TCTTTGCTTCGGAACAAAACCC 59.900 45.455 14.70 0.00 0.00 4.11
368 369 3.430333 TCTTTGCTTCGGAACAAAACC 57.570 42.857 14.70 0.00 0.00 3.27
369 370 5.800438 GGATATCTTTGCTTCGGAACAAAAC 59.200 40.000 14.70 7.89 0.00 2.43
370 371 5.391523 CGGATATCTTTGCTTCGGAACAAAA 60.392 40.000 14.70 6.48 0.00 2.44
371 372 4.094294 CGGATATCTTTGCTTCGGAACAAA 59.906 41.667 2.05 13.75 0.00 2.83
372 373 3.621268 CGGATATCTTTGCTTCGGAACAA 59.379 43.478 2.05 0.00 0.00 2.83
373 374 3.194861 CGGATATCTTTGCTTCGGAACA 58.805 45.455 2.05 0.00 0.00 3.18
374 375 2.032808 GCGGATATCTTTGCTTCGGAAC 60.033 50.000 2.05 0.00 0.00 3.62
375 376 2.210116 GCGGATATCTTTGCTTCGGAA 58.790 47.619 2.05 0.00 0.00 4.30
376 377 1.138069 TGCGGATATCTTTGCTTCGGA 59.862 47.619 2.05 0.00 0.00 4.55
377 378 1.528586 CTGCGGATATCTTTGCTTCGG 59.471 52.381 2.05 0.00 0.00 4.30
378 379 2.473816 TCTGCGGATATCTTTGCTTCG 58.526 47.619 2.05 0.00 0.00 3.79
379 380 2.805099 CCTCTGCGGATATCTTTGCTTC 59.195 50.000 2.05 0.00 33.16 3.86
380 381 2.843701 CCTCTGCGGATATCTTTGCTT 58.156 47.619 2.05 0.00 33.16 3.91
381 382 1.542108 GCCTCTGCGGATATCTTTGCT 60.542 52.381 2.05 0.00 33.16 3.91
382 383 0.871057 GCCTCTGCGGATATCTTTGC 59.129 55.000 2.05 5.53 33.16 3.68
383 384 2.540265 AGCCTCTGCGGATATCTTTG 57.460 50.000 2.05 0.00 44.33 2.77
384 385 4.899352 AATAGCCTCTGCGGATATCTTT 57.101 40.909 2.05 0.00 43.42 2.52
385 386 4.899352 AAATAGCCTCTGCGGATATCTT 57.101 40.909 2.05 0.00 43.42 2.40
386 387 4.284490 TGAAAATAGCCTCTGCGGATATCT 59.716 41.667 2.05 0.00 43.42 1.98
387 388 4.569943 TGAAAATAGCCTCTGCGGATATC 58.430 43.478 0.00 0.00 43.42 1.63
388 389 4.564406 CCTGAAAATAGCCTCTGCGGATAT 60.564 45.833 0.00 0.00 46.09 1.63
389 390 3.244215 CCTGAAAATAGCCTCTGCGGATA 60.244 47.826 0.00 0.00 44.33 2.59
390 391 2.486191 CCTGAAAATAGCCTCTGCGGAT 60.486 50.000 0.00 0.00 44.33 4.18
391 392 1.134401 CCTGAAAATAGCCTCTGCGGA 60.134 52.381 0.00 0.00 44.33 5.54
392 393 1.303309 CCTGAAAATAGCCTCTGCGG 58.697 55.000 0.00 0.00 44.33 5.69
393 394 1.303309 CCCTGAAAATAGCCTCTGCG 58.697 55.000 0.00 0.00 44.33 5.18
394 395 2.426842 ACCCTGAAAATAGCCTCTGC 57.573 50.000 0.00 0.00 37.95 4.26
395 396 5.359194 TCTTACCCTGAAAATAGCCTCTG 57.641 43.478 0.00 0.00 0.00 3.35
396 397 5.104318 CCTTCTTACCCTGAAAATAGCCTCT 60.104 44.000 0.00 0.00 0.00 3.69
397 398 5.126779 CCTTCTTACCCTGAAAATAGCCTC 58.873 45.833 0.00 0.00 0.00 4.70
398 399 4.079730 CCCTTCTTACCCTGAAAATAGCCT 60.080 45.833 0.00 0.00 0.00 4.58
399 400 4.207955 CCCTTCTTACCCTGAAAATAGCC 58.792 47.826 0.00 0.00 0.00 3.93
400 401 4.207955 CCCCTTCTTACCCTGAAAATAGC 58.792 47.826 0.00 0.00 0.00 2.97
401 402 5.452341 ACCCCTTCTTACCCTGAAAATAG 57.548 43.478 0.00 0.00 0.00 1.73
402 403 6.273889 TCTACCCCTTCTTACCCTGAAAATA 58.726 40.000 0.00 0.00 0.00 1.40
403 404 5.105853 TCTACCCCTTCTTACCCTGAAAAT 58.894 41.667 0.00 0.00 0.00 1.82
563 564 1.891150 AGGTCGTTCGAGCTTTTCCTA 59.109 47.619 18.85 0.00 39.59 2.94
607 608 0.838608 TACCCACCTGTGTCGGTTTT 59.161 50.000 3.98 0.00 34.29 2.43
1030 1031 3.198853 GCTTCATAGGGTCTTTCTGTCCT 59.801 47.826 0.00 0.00 0.00 3.85
1056 1057 2.054453 GCCAATCCCAGGGAACAGC 61.054 63.158 13.94 11.79 34.34 4.40
1135 1137 2.042464 TGGTATCTCACTGATGGCTCC 58.958 52.381 0.00 0.00 36.65 4.70
1219 1221 2.550978 CTACGCCCCATAGAAACTGTG 58.449 52.381 0.00 0.00 0.00 3.66
1608 1610 5.397334 GGAAAGGTCCTCTCAATGCTCTAAT 60.397 44.000 0.00 0.00 41.24 1.73
1640 1642 1.982938 CGTCCTTCCCGGTCCTCTT 60.983 63.158 0.00 0.00 0.00 2.85
1748 1750 1.852157 GCACTCATCTTGGGGTGGGA 61.852 60.000 0.00 0.00 0.00 4.37
1835 1837 1.612146 TTCTGTCGCTCCATCCCCA 60.612 57.895 0.00 0.00 0.00 4.96
2167 2169 2.806244 CGAACCATGAACGAGGAAAGTT 59.194 45.455 0.00 0.00 34.07 2.66
2168 2170 2.036733 TCGAACCATGAACGAGGAAAGT 59.963 45.455 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.