Multiple sequence alignment - TraesCS6B01G250600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G250600 chr6B 100.000 2414 0 0 1 2414 450081005 450083418 0.000000e+00 4458.0
1 TraesCS6B01G250600 chr6B 97.368 76 0 2 785 860 34333647 34333720 7.010000e-26 128.0
2 TraesCS6B01G250600 chr5D 98.481 724 10 1 1691 2414 503248165 503248887 0.000000e+00 1275.0
3 TraesCS6B01G250600 chr5D 98.204 724 12 1 1691 2414 503261883 503261161 0.000000e+00 1264.0
4 TraesCS6B01G250600 chr5D 96.502 486 16 1 284 769 432293049 432293533 0.000000e+00 802.0
5 TraesCS6B01G250600 chr5D 98.731 394 5 0 933 1326 6188122 6188515 0.000000e+00 701.0
6 TraesCS6B01G250600 chr5D 98.750 240 3 0 1327 1566 345938529 345938768 6.170000e-116 427.0
7 TraesCS6B01G250600 chr5D 98.750 240 3 0 1327 1566 503330635 503330874 6.170000e-116 427.0
8 TraesCS6B01G250600 chr5D 97.500 240 6 0 1327 1566 6236176 6235937 6.210000e-111 411.0
9 TraesCS6B01G250600 chr5D 100.000 128 0 0 1565 1692 446176814 446176941 1.120000e-58 237.0
10 TraesCS6B01G250600 chr5D 100.000 126 0 0 1 126 6187251 6187126 1.440000e-57 233.0
11 TraesCS6B01G250600 chr5D 100.000 126 0 0 1 126 432405184 432405309 1.440000e-57 233.0
12 TraesCS6B01G250600 chr5D 100.000 126 0 0 1 126 503279914 503280039 1.440000e-57 233.0
13 TraesCS6B01G250600 chr5D 99.219 128 1 0 1565 1692 503275710 503275583 5.190000e-57 231.0
14 TraesCS6B01G250600 chr5D 96.203 79 1 2 785 863 484114133 484114057 7.010000e-26 128.0
15 TraesCS6B01G250600 chr2A 98.481 724 10 1 1691 2414 726903561 726902839 0.000000e+00 1275.0
16 TraesCS6B01G250600 chr7D 98.343 724 11 1 1691 2414 231605024 231604302 0.000000e+00 1269.0
17 TraesCS6B01G250600 chr7D 97.083 240 6 1 1327 1566 88619353 88619115 1.040000e-108 403.0
18 TraesCS6B01G250600 chr7D 99.219 128 1 0 1565 1692 231577114 231577241 5.190000e-57 231.0
19 TraesCS6B01G250600 chr7D 97.368 76 0 2 785 860 231597990 231598063 7.010000e-26 128.0
20 TraesCS6B01G250600 chr3A 98.204 724 12 1 1691 2414 66002239 66001517 0.000000e+00 1264.0
21 TraesCS6B01G250600 chr3A 96.708 486 15 1 284 769 672878761 672879245 0.000000e+00 808.0
22 TraesCS6B01G250600 chr3A 99.219 128 1 0 1565 1692 672907494 672907367 5.190000e-57 231.0
23 TraesCS6B01G250600 chr3A 94.253 87 3 2 858 942 593311669 593311583 5.420000e-27 132.0
24 TraesCS6B01G250600 chr7B 98.194 720 13 0 1695 2414 663096528 663095809 0.000000e+00 1258.0
25 TraesCS6B01G250600 chr7B 97.928 724 14 1 1691 2414 662729808 662730530 0.000000e+00 1253.0
26 TraesCS6B01G250600 chr7B 98.817 507 6 0 284 790 662737191 662736685 0.000000e+00 904.0
27 TraesCS6B01G250600 chr3B 97.928 724 14 1 1691 2414 201542414 201543136 0.000000e+00 1253.0
28 TraesCS6B01G250600 chr3B 98.422 507 8 0 284 790 201561103 201561609 0.000000e+00 893.0
29 TraesCS6B01G250600 chr3B 97.917 240 5 0 1327 1566 201492728 201492967 1.340000e-112 416.0
30 TraesCS6B01G250600 chr3B 99.219 128 1 0 1565 1692 101913691 101913818 5.190000e-57 231.0
31 TraesCS6B01G250600 chr3B 97.368 76 0 2 785 860 201562407 201562480 7.010000e-26 128.0
32 TraesCS6B01G250600 chr1D 97.928 724 14 1 1691 2414 254528500 254529222 0.000000e+00 1253.0
33 TraesCS6B01G250600 chr1D 97.925 241 4 1 1327 1566 254476722 254476962 1.340000e-112 416.0
34 TraesCS6B01G250600 chr1D 100.000 126 0 0 1 126 254399799 254399924 1.440000e-57 233.0
35 TraesCS6B01G250600 chr1D 100.000 74 0 0 858 931 176206721 176206648 1.160000e-28 137.0
36 TraesCS6B01G250600 chr1D 100.000 74 0 0 858 931 254385041 254385114 1.160000e-28 137.0
37 TraesCS6B01G250600 chr1D 97.368 76 0 2 785 860 254534571 254534498 7.010000e-26 128.0
38 TraesCS6B01G250600 chr1B 98.619 507 7 0 284 790 633729193 633729699 0.000000e+00 898.0
39 TraesCS6B01G250600 chr1B 100.000 39 0 0 752 790 406148043 406148081 3.330000e-09 73.1
40 TraesCS6B01G250600 chr2D 97.942 486 8 2 284 769 196964075 196964558 0.000000e+00 841.0
41 TraesCS6B01G250600 chr2D 97.755 490 7 1 284 769 272801988 272802477 0.000000e+00 841.0
42 TraesCS6B01G250600 chr2D 97.755 490 7 1 284 769 630268899 630268410 0.000000e+00 841.0
43 TraesCS6B01G250600 chr2D 98.985 394 3 1 933 1326 322926922 322926530 0.000000e+00 704.0
44 TraesCS6B01G250600 chr2D 97.925 241 4 1 1327 1566 648663579 648663339 1.340000e-112 416.0
45 TraesCS6B01G250600 chr2D 97.368 76 0 2 785 860 299148035 299148108 7.010000e-26 128.0
46 TraesCS6B01G250600 chr2D 97.368 76 0 2 785 860 630267602 630267529 7.010000e-26 128.0
47 TraesCS6B01G250600 chr5B 97.119 486 13 1 284 769 432876395 432875911 0.000000e+00 819.0
48 TraesCS6B01G250600 chrUn 98.985 394 3 1 933 1326 93410448 93410056 0.000000e+00 704.0
49 TraesCS6B01G250600 chrUn 98.731 394 4 1 933 1326 216519419 216519027 0.000000e+00 699.0
50 TraesCS6B01G250600 chrUn 98.731 394 4 1 933 1326 216520947 216521339 0.000000e+00 699.0
51 TraesCS6B01G250600 chrUn 97.925 241 4 1 1327 1566 426380661 426380421 1.340000e-112 416.0
52 TraesCS6B01G250600 chrUn 98.773 163 1 1 127 288 216514246 216514084 3.040000e-74 289.0
53 TraesCS6B01G250600 chrUn 98.773 163 1 1 127 288 286269137 286269299 3.040000e-74 289.0
54 TraesCS6B01G250600 chrUn 98.773 163 1 1 127 288 379972020 379971858 3.040000e-74 289.0
55 TraesCS6B01G250600 chrUn 98.773 163 1 1 127 288 412654322 412654484 3.040000e-74 289.0
56 TraesCS6B01G250600 chrUn 98.773 163 1 1 127 288 420149779 420149941 3.040000e-74 289.0
57 TraesCS6B01G250600 chrUn 99.219 128 1 0 1565 1692 389361651 389361778 5.190000e-57 231.0
58 TraesCS6B01G250600 chrUn 99.219 128 1 0 1565 1692 421834773 421834900 5.190000e-57 231.0
59 TraesCS6B01G250600 chrUn 100.000 74 0 0 858 931 216509138 216509211 1.160000e-28 137.0
60 TraesCS6B01G250600 chrUn 100.000 74 0 0 858 931 397077324 397077397 1.160000e-28 137.0
61 TraesCS6B01G250600 chrUn 100.000 74 0 0 858 931 453113668 453113595 1.160000e-28 137.0
62 TraesCS6B01G250600 chrUn 98.649 74 1 0 858 931 440226883 440226956 5.420000e-27 132.0
63 TraesCS6B01G250600 chrUn 97.368 76 0 2 785 860 416132544 416132617 7.010000e-26 128.0
64 TraesCS6B01G250600 chr4A 98.985 394 3 1 933 1326 73813753 73813361 0.000000e+00 704.0
65 TraesCS6B01G250600 chr4A 100.000 126 0 0 1 126 73814342 73814217 1.440000e-57 233.0
66 TraesCS6B01G250600 chr1A 98.985 394 3 1 933 1326 554511431 554511823 0.000000e+00 704.0
67 TraesCS6B01G250600 chr1A 98.333 240 4 0 1327 1566 554448221 554447982 2.870000e-114 422.0
68 TraesCS6B01G250600 chr1A 98.773 163 1 1 127 288 554517143 554517305 3.040000e-74 289.0
69 TraesCS6B01G250600 chr1A 99.219 128 1 0 1565 1692 554514764 554514891 5.190000e-57 231.0
70 TraesCS6B01G250600 chr1A 99.206 126 1 0 1 126 554510566 554510441 6.710000e-56 228.0
71 TraesCS6B01G250600 chr3D 98.734 395 4 1 933 1327 589280359 589279966 0.000000e+00 701.0
72 TraesCS6B01G250600 chr3D 98.773 163 1 1 127 288 80425804 80425966 3.040000e-74 289.0
73 TraesCS6B01G250600 chr3D 98.773 163 1 1 127 288 589272599 589272437 3.040000e-74 289.0
74 TraesCS6B01G250600 chr3D 100.000 126 0 0 1 126 589281230 589281355 1.440000e-57 233.0
75 TraesCS6B01G250600 chr6D 98.731 394 4 1 933 1326 168252581 168252189 0.000000e+00 699.0
76 TraesCS6B01G250600 chr6D 98.773 163 1 1 127 288 319937757 319937595 3.040000e-74 289.0
77 TraesCS6B01G250600 chr6D 100.000 126 0 0 1 126 45517881 45517756 1.440000e-57 233.0
78 TraesCS6B01G250600 chr6D 99.219 128 1 0 1565 1692 168257442 168257569 5.190000e-57 231.0
79 TraesCS6B01G250600 chr6D 100.000 74 0 0 858 931 389249355 389249282 1.160000e-28 137.0
80 TraesCS6B01G250600 chr6D 100.000 74 0 0 858 931 389254150 389254077 1.160000e-28 137.0
81 TraesCS6B01G250600 chr5A 100.000 126 0 0 1 126 34951645 34951520 1.440000e-57 233.0
82 TraesCS6B01G250600 chr7A 97.368 76 0 2 785 860 352679065 352679138 7.010000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G250600 chr6B 450081005 450083418 2413 False 4458.0 4458 100.000000 1 2414 1 chr6B.!!$F2 2413
1 TraesCS6B01G250600 chr5D 503248165 503248887 722 False 1275.0 1275 98.481000 1691 2414 1 chr5D.!!$F6 723
2 TraesCS6B01G250600 chr5D 503261161 503261883 722 True 1264.0 1264 98.204000 1691 2414 1 chr5D.!!$R4 723
3 TraesCS6B01G250600 chr2A 726902839 726903561 722 True 1275.0 1275 98.481000 1691 2414 1 chr2A.!!$R1 723
4 TraesCS6B01G250600 chr7D 231604302 231605024 722 True 1269.0 1269 98.343000 1691 2414 1 chr7D.!!$R2 723
5 TraesCS6B01G250600 chr3A 66001517 66002239 722 True 1264.0 1264 98.204000 1691 2414 1 chr3A.!!$R1 723
6 TraesCS6B01G250600 chr7B 663095809 663096528 719 True 1258.0 1258 98.194000 1695 2414 1 chr7B.!!$R2 719
7 TraesCS6B01G250600 chr7B 662729808 662730530 722 False 1253.0 1253 97.928000 1691 2414 1 chr7B.!!$F1 723
8 TraesCS6B01G250600 chr7B 662736685 662737191 506 True 904.0 904 98.817000 284 790 1 chr7B.!!$R1 506
9 TraesCS6B01G250600 chr3B 201542414 201543136 722 False 1253.0 1253 97.928000 1691 2414 1 chr3B.!!$F3 723
10 TraesCS6B01G250600 chr3B 201561103 201562480 1377 False 510.5 893 97.895000 284 860 2 chr3B.!!$F4 576
11 TraesCS6B01G250600 chr1D 254528500 254529222 722 False 1253.0 1253 97.928000 1691 2414 1 chr1D.!!$F4 723
12 TraesCS6B01G250600 chr1B 633729193 633729699 506 False 898.0 898 98.619000 284 790 1 chr1B.!!$F2 506
13 TraesCS6B01G250600 chr2D 630267529 630268899 1370 True 484.5 841 97.561500 284 860 2 chr2D.!!$R3 576
14 TraesCS6B01G250600 chr4A 73813361 73814342 981 True 468.5 704 99.492500 1 1326 2 chr4A.!!$R1 1325
15 TraesCS6B01G250600 chr1A 554511431 554517305 5874 False 408.0 704 98.992333 127 1692 3 chr1A.!!$F1 1565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 1884 0.242017 CCCTTCTTCTTGCGCCAAAG 59.758 55.0 4.18 2.39 0.0 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 6779 0.838608 TACCCACCTGTGTCGGTTTT 59.161 50.0 3.98 0.0 34.29 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 4.323553 ACGAGAGTTGTTGAAACTAGCT 57.676 40.909 0.00 0.00 46.40 3.32
128 129 5.116882 ACGAGAGTTGTTGAAACTAGCTTT 58.883 37.500 0.00 0.00 46.40 3.51
129 130 5.234543 ACGAGAGTTGTTGAAACTAGCTTTC 59.765 40.000 0.00 9.52 46.40 2.62
131 132 6.018669 CGAGAGTTGTTGAAACTAGCTTTCTT 60.019 38.462 14.65 0.00 39.36 2.52
133 134 6.038714 AGAGTTGTTGAAACTAGCTTTCTTGG 59.961 38.462 14.65 0.00 39.36 3.61
134 135 5.652452 AGTTGTTGAAACTAGCTTTCTTGGT 59.348 36.000 14.65 0.00 39.36 3.67
135 136 6.152831 AGTTGTTGAAACTAGCTTTCTTGGTT 59.847 34.615 14.65 0.00 39.36 3.67
136 137 6.524101 TGTTGAAACTAGCTTTCTTGGTTT 57.476 33.333 14.65 0.00 39.36 3.27
138 139 6.811170 TGTTGAAACTAGCTTTCTTGGTTTTG 59.189 34.615 14.65 0.00 39.36 2.44
139 140 6.524101 TGAAACTAGCTTTCTTGGTTTTGT 57.476 33.333 14.65 0.00 39.36 2.83
140 141 6.560711 TGAAACTAGCTTTCTTGGTTTTGTC 58.439 36.000 14.65 0.00 39.36 3.18
141 142 5.515797 AACTAGCTTTCTTGGTTTTGTCC 57.484 39.130 0.00 0.00 0.00 4.02
142 143 4.532834 ACTAGCTTTCTTGGTTTTGTCCA 58.467 39.130 0.00 0.00 35.49 4.02
144 145 3.365472 AGCTTTCTTGGTTTTGTCCAGT 58.635 40.909 0.00 0.00 38.80 4.00
145 146 3.381590 AGCTTTCTTGGTTTTGTCCAGTC 59.618 43.478 0.00 0.00 38.80 3.51
146 147 3.130340 GCTTTCTTGGTTTTGTCCAGTCA 59.870 43.478 0.00 0.00 38.80 3.41
147 148 4.202151 GCTTTCTTGGTTTTGTCCAGTCAT 60.202 41.667 0.00 0.00 38.80 3.06
148 149 5.682212 GCTTTCTTGGTTTTGTCCAGTCATT 60.682 40.000 0.00 0.00 38.80 2.57
149 150 6.460953 GCTTTCTTGGTTTTGTCCAGTCATTA 60.461 38.462 0.00 0.00 38.80 1.90
150 151 7.411486 TTTCTTGGTTTTGTCCAGTCATTAA 57.589 32.000 0.00 0.00 38.80 1.40
151 152 7.595819 TTCTTGGTTTTGTCCAGTCATTAAT 57.404 32.000 0.00 0.00 38.80 1.40
152 153 8.698973 TTCTTGGTTTTGTCCAGTCATTAATA 57.301 30.769 0.00 0.00 38.80 0.98
153 154 8.698973 TCTTGGTTTTGTCCAGTCATTAATAA 57.301 30.769 0.00 0.00 38.80 1.40
154 155 8.573035 TCTTGGTTTTGTCCAGTCATTAATAAC 58.427 33.333 0.00 0.00 38.80 1.89
155 156 8.472007 TTGGTTTTGTCCAGTCATTAATAACT 57.528 30.769 0.00 0.00 38.80 2.24
156 157 8.472007 TGGTTTTGTCCAGTCATTAATAACTT 57.528 30.769 0.00 0.00 33.19 2.66
157 158 8.356657 TGGTTTTGTCCAGTCATTAATAACTTG 58.643 33.333 0.00 0.00 33.19 3.16
158 159 8.573035 GGTTTTGTCCAGTCATTAATAACTTGA 58.427 33.333 0.00 0.00 0.00 3.02
194 195 9.480538 GATAATAGTAGATAGAAAGAACGCTCG 57.519 37.037 0.00 0.00 0.00 5.03
195 196 6.864360 ATAGTAGATAGAAAGAACGCTCGT 57.136 37.500 0.00 0.00 0.00 4.18
196 197 7.959689 ATAGTAGATAGAAAGAACGCTCGTA 57.040 36.000 0.00 0.00 0.00 3.43
197 198 6.674694 AGTAGATAGAAAGAACGCTCGTAA 57.325 37.500 0.00 0.00 0.00 3.18
198 199 6.717413 AGTAGATAGAAAGAACGCTCGTAAG 58.283 40.000 0.00 0.00 0.00 2.34
199 200 4.922719 AGATAGAAAGAACGCTCGTAAGG 58.077 43.478 0.00 0.00 38.47 2.69
200 201 4.639310 AGATAGAAAGAACGCTCGTAAGGA 59.361 41.667 0.00 0.00 38.47 3.36
201 202 3.219052 AGAAAGAACGCTCGTAAGGAG 57.781 47.619 0.00 0.00 46.06 3.69
202 203 2.557490 AGAAAGAACGCTCGTAAGGAGT 59.443 45.455 0.00 0.00 45.03 3.85
203 204 2.633199 AAGAACGCTCGTAAGGAGTC 57.367 50.000 0.00 0.00 45.03 3.36
204 205 0.810016 AGAACGCTCGTAAGGAGTCC 59.190 55.000 0.00 0.00 45.03 3.85
205 206 0.810016 GAACGCTCGTAAGGAGTCCT 59.190 55.000 5.62 5.62 45.03 3.85
206 207 2.012673 GAACGCTCGTAAGGAGTCCTA 58.987 52.381 13.43 0.00 45.03 2.94
207 208 2.345124 ACGCTCGTAAGGAGTCCTAT 57.655 50.000 13.43 5.63 45.03 2.57
208 209 2.652590 ACGCTCGTAAGGAGTCCTATT 58.347 47.619 13.43 0.00 45.03 1.73
209 210 2.358267 ACGCTCGTAAGGAGTCCTATTG 59.642 50.000 13.43 5.10 45.03 1.90
210 211 2.617308 CGCTCGTAAGGAGTCCTATTGA 59.383 50.000 13.43 9.39 45.03 2.57
211 212 3.066342 CGCTCGTAAGGAGTCCTATTGAA 59.934 47.826 13.43 0.00 45.03 2.69
212 213 4.439700 CGCTCGTAAGGAGTCCTATTGAAA 60.440 45.833 13.43 0.00 45.03 2.69
213 214 4.804665 GCTCGTAAGGAGTCCTATTGAAAC 59.195 45.833 13.43 3.66 45.03 2.78
214 215 5.334724 TCGTAAGGAGTCCTATTGAAACC 57.665 43.478 13.43 0.00 31.13 3.27
215 216 4.773674 TCGTAAGGAGTCCTATTGAAACCA 59.226 41.667 13.43 0.00 31.13 3.67
216 217 5.246656 TCGTAAGGAGTCCTATTGAAACCAA 59.753 40.000 13.43 0.00 31.13 3.67
217 218 5.581085 CGTAAGGAGTCCTATTGAAACCAAG 59.419 44.000 13.43 0.00 31.13 3.61
218 219 5.843019 AAGGAGTCCTATTGAAACCAAGA 57.157 39.130 13.43 0.00 31.13 3.02
219 220 5.843019 AGGAGTCCTATTGAAACCAAGAA 57.157 39.130 10.94 0.00 28.47 2.52
220 221 6.200878 AGGAGTCCTATTGAAACCAAGAAA 57.799 37.500 10.94 0.00 28.47 2.52
221 222 6.794534 AGGAGTCCTATTGAAACCAAGAAAT 58.205 36.000 10.94 0.00 28.47 2.17
222 223 7.928873 AGGAGTCCTATTGAAACCAAGAAATA 58.071 34.615 10.94 0.00 28.47 1.40
223 224 8.560903 AGGAGTCCTATTGAAACCAAGAAATAT 58.439 33.333 10.94 0.00 28.47 1.28
224 225 9.847224 GGAGTCCTATTGAAACCAAGAAATATA 57.153 33.333 0.41 0.00 0.00 0.86
226 227 9.853177 AGTCCTATTGAAACCAAGAAATATAGG 57.147 33.333 0.00 0.00 0.00 2.57
227 228 8.568794 GTCCTATTGAAACCAAGAAATATAGGC 58.431 37.037 0.00 0.00 0.00 3.93
228 229 7.724061 TCCTATTGAAACCAAGAAATATAGGCC 59.276 37.037 0.00 0.00 0.00 5.19
229 230 7.725844 CCTATTGAAACCAAGAAATATAGGCCT 59.274 37.037 11.78 11.78 0.00 5.19
230 231 6.773976 TTGAAACCAAGAAATATAGGCCTG 57.226 37.500 17.99 0.00 0.00 4.85
231 232 4.644685 TGAAACCAAGAAATATAGGCCTGC 59.355 41.667 17.99 0.00 0.00 4.85
232 233 4.526438 AACCAAGAAATATAGGCCTGCT 57.474 40.909 17.99 5.03 0.00 4.24
233 234 4.526438 ACCAAGAAATATAGGCCTGCTT 57.474 40.909 17.99 2.64 0.00 3.91
234 235 4.210331 ACCAAGAAATATAGGCCTGCTTG 58.790 43.478 17.99 17.02 0.00 4.01
235 236 3.005155 CCAAGAAATATAGGCCTGCTTGC 59.995 47.826 17.99 4.50 32.23 4.01
243 244 2.677524 GCCTGCTTGCCATCCACA 60.678 61.111 0.00 0.00 0.00 4.17
244 245 2.998279 GCCTGCTTGCCATCCACAC 61.998 63.158 0.00 0.00 0.00 3.82
245 246 2.345760 CCTGCTTGCCATCCACACC 61.346 63.158 0.00 0.00 0.00 4.16
246 247 1.604308 CTGCTTGCCATCCACACCA 60.604 57.895 0.00 0.00 0.00 4.17
247 248 1.592400 CTGCTTGCCATCCACACCAG 61.592 60.000 0.00 0.00 0.00 4.00
248 249 1.303561 GCTTGCCATCCACACCAGA 60.304 57.895 0.00 0.00 0.00 3.86
249 250 0.895100 GCTTGCCATCCACACCAGAA 60.895 55.000 0.00 0.00 0.00 3.02
250 251 1.843368 CTTGCCATCCACACCAGAAT 58.157 50.000 0.00 0.00 0.00 2.40
251 252 2.945440 GCTTGCCATCCACACCAGAATA 60.945 50.000 0.00 0.00 0.00 1.75
252 253 2.715749 TGCCATCCACACCAGAATAG 57.284 50.000 0.00 0.00 0.00 1.73
253 254 2.195727 TGCCATCCACACCAGAATAGA 58.804 47.619 0.00 0.00 0.00 1.98
254 255 2.779430 TGCCATCCACACCAGAATAGAT 59.221 45.455 0.00 0.00 0.00 1.98
255 256 3.973305 TGCCATCCACACCAGAATAGATA 59.027 43.478 0.00 0.00 0.00 1.98
256 257 4.040829 TGCCATCCACACCAGAATAGATAG 59.959 45.833 0.00 0.00 0.00 2.08
257 258 4.284490 GCCATCCACACCAGAATAGATAGA 59.716 45.833 0.00 0.00 0.00 1.98
258 259 5.568423 GCCATCCACACCAGAATAGATAGAG 60.568 48.000 0.00 0.00 0.00 2.43
259 260 5.541868 CCATCCACACCAGAATAGATAGAGT 59.458 44.000 0.00 0.00 0.00 3.24
260 261 6.042552 CCATCCACACCAGAATAGATAGAGTT 59.957 42.308 0.00 0.00 0.00 3.01
261 262 7.419518 CCATCCACACCAGAATAGATAGAGTTT 60.420 40.741 0.00 0.00 0.00 2.66
262 263 7.496346 TCCACACCAGAATAGATAGAGTTTT 57.504 36.000 0.00 0.00 0.00 2.43
263 264 7.556844 TCCACACCAGAATAGATAGAGTTTTC 58.443 38.462 0.00 0.00 0.00 2.29
264 265 6.763610 CCACACCAGAATAGATAGAGTTTTCC 59.236 42.308 0.00 0.00 0.00 3.13
265 266 6.477033 CACACCAGAATAGATAGAGTTTTCCG 59.523 42.308 0.00 0.00 0.00 4.30
266 267 6.380274 ACACCAGAATAGATAGAGTTTTCCGA 59.620 38.462 0.00 0.00 0.00 4.55
267 268 7.093465 ACACCAGAATAGATAGAGTTTTCCGAA 60.093 37.037 0.00 0.00 0.00 4.30
268 269 7.436673 CACCAGAATAGATAGAGTTTTCCGAAG 59.563 40.741 0.00 0.00 0.00 3.79
269 270 7.342284 ACCAGAATAGATAGAGTTTTCCGAAGA 59.658 37.037 0.00 0.00 0.00 2.87
270 271 8.198109 CCAGAATAGATAGAGTTTTCCGAAGAA 58.802 37.037 0.00 0.00 0.00 2.52
271 272 9.587772 CAGAATAGATAGAGTTTTCCGAAGAAA 57.412 33.333 0.00 0.00 40.26 2.52
272 273 9.589111 AGAATAGATAGAGTTTTCCGAAGAAAC 57.411 33.333 0.00 0.00 41.69 2.78
273 274 8.719560 AATAGATAGAGTTTTCCGAAGAAACC 57.280 34.615 0.00 0.00 41.69 3.27
274 275 6.361768 AGATAGAGTTTTCCGAAGAAACCT 57.638 37.500 0.00 0.00 41.69 3.50
275 276 6.166982 AGATAGAGTTTTCCGAAGAAACCTG 58.833 40.000 0.00 0.00 41.69 4.00
276 277 2.879026 AGAGTTTTCCGAAGAAACCTGC 59.121 45.455 0.00 0.00 41.69 4.85
277 278 2.879026 GAGTTTTCCGAAGAAACCTGCT 59.121 45.455 0.00 0.00 41.69 4.24
278 279 4.062991 GAGTTTTCCGAAGAAACCTGCTA 58.937 43.478 0.00 0.00 41.69 3.49
279 280 4.065789 AGTTTTCCGAAGAAACCTGCTAG 58.934 43.478 0.00 0.00 41.69 3.42
280 281 3.764237 TTTCCGAAGAAACCTGCTAGT 57.236 42.857 0.00 0.00 37.07 2.57
281 282 2.743636 TCCGAAGAAACCTGCTAGTG 57.256 50.000 0.00 0.00 0.00 2.74
282 283 1.275291 TCCGAAGAAACCTGCTAGTGG 59.725 52.381 0.00 0.00 0.00 4.00
476 519 2.880963 AGCTTCATACGGCTTCTCTC 57.119 50.000 0.00 0.00 34.96 3.20
514 558 1.804748 GGACTGTTTTGTTCCTAGCCG 59.195 52.381 0.00 0.00 0.00 5.52
878 1860 9.745018 ATAATAACCAAGTCAAGATGATATGGG 57.255 33.333 14.76 4.27 38.50 4.00
879 1861 5.456921 AACCAAGTCAAGATGATATGGGT 57.543 39.130 14.76 8.46 38.50 4.51
880 1862 5.041191 ACCAAGTCAAGATGATATGGGTC 57.959 43.478 14.76 0.00 38.50 4.46
881 1863 4.060900 CCAAGTCAAGATGATATGGGTCG 58.939 47.826 6.52 0.00 33.78 4.79
882 1864 3.393089 AGTCAAGATGATATGGGTCGC 57.607 47.619 0.00 0.00 0.00 5.19
883 1865 2.037772 AGTCAAGATGATATGGGTCGCC 59.962 50.000 0.00 0.00 0.00 5.54
884 1866 1.347707 TCAAGATGATATGGGTCGCCC 59.652 52.381 7.87 7.87 45.71 6.13
894 1876 4.303257 GGTCGCCCCTTCTTCTTG 57.697 61.111 0.00 0.00 0.00 3.02
895 1877 2.041115 GGTCGCCCCTTCTTCTTGC 61.041 63.158 0.00 0.00 0.00 4.01
896 1878 2.047274 TCGCCCCTTCTTCTTGCG 60.047 61.111 0.00 0.00 46.09 4.85
897 1879 3.804193 CGCCCCTTCTTCTTGCGC 61.804 66.667 0.00 0.00 38.69 6.09
898 1880 3.443925 GCCCCTTCTTCTTGCGCC 61.444 66.667 4.18 0.00 0.00 6.53
899 1881 2.034066 CCCCTTCTTCTTGCGCCA 59.966 61.111 4.18 0.00 0.00 5.69
900 1882 1.603455 CCCCTTCTTCTTGCGCCAA 60.603 57.895 4.18 0.00 0.00 4.52
901 1883 1.178534 CCCCTTCTTCTTGCGCCAAA 61.179 55.000 4.18 0.00 0.00 3.28
902 1884 0.242017 CCCTTCTTCTTGCGCCAAAG 59.758 55.000 4.18 2.39 0.00 2.77
903 1885 1.238439 CCTTCTTCTTGCGCCAAAGA 58.762 50.000 4.18 5.34 34.36 2.52
904 1886 1.815003 CCTTCTTCTTGCGCCAAAGAT 59.185 47.619 10.60 0.00 36.12 2.40
905 1887 2.159462 CCTTCTTCTTGCGCCAAAGATC 60.159 50.000 10.60 0.00 36.12 2.75
906 1888 2.479566 TCTTCTTGCGCCAAAGATCT 57.520 45.000 10.60 0.00 36.12 2.75
907 1889 2.783135 TCTTCTTGCGCCAAAGATCTT 58.217 42.857 10.60 0.88 36.12 2.40
908 1890 3.937814 TCTTCTTGCGCCAAAGATCTTA 58.062 40.909 8.75 0.00 36.12 2.10
909 1891 3.684788 TCTTCTTGCGCCAAAGATCTTAC 59.315 43.478 8.75 0.70 36.12 2.34
910 1892 2.356135 TCTTGCGCCAAAGATCTTACC 58.644 47.619 8.75 0.00 31.19 2.85
911 1893 2.083774 CTTGCGCCAAAGATCTTACCA 58.916 47.619 8.75 0.00 0.00 3.25
912 1894 2.418368 TGCGCCAAAGATCTTACCAT 57.582 45.000 8.75 0.00 0.00 3.55
913 1895 2.722094 TGCGCCAAAGATCTTACCATT 58.278 42.857 8.75 0.00 0.00 3.16
914 1896 3.088532 TGCGCCAAAGATCTTACCATTT 58.911 40.909 8.75 0.00 0.00 2.32
915 1897 3.128589 TGCGCCAAAGATCTTACCATTTC 59.871 43.478 8.75 0.00 0.00 2.17
916 1898 3.489229 GCGCCAAAGATCTTACCATTTCC 60.489 47.826 8.75 0.00 0.00 3.13
917 1899 3.242739 CGCCAAAGATCTTACCATTTCCG 60.243 47.826 8.75 0.32 0.00 4.30
918 1900 3.945285 GCCAAAGATCTTACCATTTCCGA 59.055 43.478 8.75 0.00 0.00 4.55
919 1901 4.398044 GCCAAAGATCTTACCATTTCCGAA 59.602 41.667 8.75 0.00 0.00 4.30
920 1902 5.449177 GCCAAAGATCTTACCATTTCCGAAG 60.449 44.000 8.75 0.00 0.00 3.79
1247 2229 2.455674 ATGAGTTTCGCTACAGCACA 57.544 45.000 1.61 0.00 42.21 4.57
1329 2311 3.329929 CCTAAGGGCATATCGGTAACC 57.670 52.381 0.00 0.00 0.00 2.85
1330 2312 2.635915 CCTAAGGGCATATCGGTAACCA 59.364 50.000 1.04 0.00 0.00 3.67
1331 2313 3.071892 CCTAAGGGCATATCGGTAACCAA 59.928 47.826 1.04 0.00 0.00 3.67
1332 2314 2.632987 AGGGCATATCGGTAACCAAC 57.367 50.000 1.04 0.00 0.00 3.77
1333 2315 1.841277 AGGGCATATCGGTAACCAACA 59.159 47.619 1.04 0.00 0.00 3.33
1335 2317 2.356695 GGGCATATCGGTAACCAACAAC 59.643 50.000 1.04 0.00 0.00 3.32
1337 2319 4.444536 GGCATATCGGTAACCAACAACTA 58.555 43.478 0.00 0.00 0.00 2.24
1338 2320 4.877251 GGCATATCGGTAACCAACAACTAA 59.123 41.667 0.00 0.00 0.00 2.24
1339 2321 5.007332 GGCATATCGGTAACCAACAACTAAG 59.993 44.000 0.00 0.00 0.00 2.18
1340 2322 5.813672 GCATATCGGTAACCAACAACTAAGA 59.186 40.000 0.00 0.00 0.00 2.10
1344 2942 9.760077 ATATCGGTAACCAACAACTAAGATAAG 57.240 33.333 0.00 0.00 0.00 1.73
1345 2943 5.870978 TCGGTAACCAACAACTAAGATAAGC 59.129 40.000 0.00 0.00 0.00 3.09
1349 2947 4.890088 ACCAACAACTAAGATAAGCACGA 58.110 39.130 0.00 0.00 0.00 4.35
1357 2955 8.564574 ACAACTAAGATAAGCACGAAAATCAAA 58.435 29.630 0.00 0.00 0.00 2.69
1358 2956 9.055248 CAACTAAGATAAGCACGAAAATCAAAG 57.945 33.333 0.00 0.00 0.00 2.77
1359 2957 7.244192 ACTAAGATAAGCACGAAAATCAAAGC 58.756 34.615 0.00 0.00 0.00 3.51
1365 2963 4.874970 AGCACGAAAATCAAAGCTTCAAT 58.125 34.783 0.00 0.00 0.00 2.57
1366 2964 6.012658 AGCACGAAAATCAAAGCTTCAATA 57.987 33.333 0.00 0.00 0.00 1.90
1367 2965 6.446318 AGCACGAAAATCAAAGCTTCAATAA 58.554 32.000 0.00 0.00 0.00 1.40
1368 2966 6.922957 AGCACGAAAATCAAAGCTTCAATAAA 59.077 30.769 0.00 0.00 0.00 1.40
1369 2967 7.437862 AGCACGAAAATCAAAGCTTCAATAAAA 59.562 29.630 0.00 0.00 0.00 1.52
1372 2970 9.092876 ACGAAAATCAAAGCTTCAATAAAAACA 57.907 25.926 0.00 0.00 0.00 2.83
1373 2971 9.571804 CGAAAATCAAAGCTTCAATAAAAACAG 57.428 29.630 0.00 0.00 0.00 3.16
1379 2977 9.677567 TCAAAGCTTCAATAAAAACAGATACAC 57.322 29.630 0.00 0.00 0.00 2.90
1380 2978 8.915654 CAAAGCTTCAATAAAAACAGATACACC 58.084 33.333 0.00 0.00 0.00 4.16
1381 2979 8.409358 AAGCTTCAATAAAAACAGATACACCT 57.591 30.769 0.00 0.00 0.00 4.00
1382 2980 9.515226 AAGCTTCAATAAAAACAGATACACCTA 57.485 29.630 0.00 0.00 0.00 3.08
1383 2981 9.515226 AGCTTCAATAAAAACAGATACACCTAA 57.485 29.630 0.00 0.00 0.00 2.69
1394 3169 6.261118 ACAGATACACCTAATACGTCGAAAC 58.739 40.000 0.00 0.00 0.00 2.78
1397 3172 4.771590 ACACCTAATACGTCGAAACTCA 57.228 40.909 0.00 0.00 0.00 3.41
1398 3173 5.320549 ACACCTAATACGTCGAAACTCAT 57.679 39.130 0.00 0.00 0.00 2.90
1400 3175 5.575606 ACACCTAATACGTCGAAACTCATTG 59.424 40.000 0.00 0.00 0.00 2.82
1401 3176 4.565564 ACCTAATACGTCGAAACTCATTGC 59.434 41.667 0.00 0.00 0.00 3.56
1402 3177 4.025979 CCTAATACGTCGAAACTCATTGCC 60.026 45.833 0.00 0.00 0.00 4.52
1403 3178 1.717194 TACGTCGAAACTCATTGCCC 58.283 50.000 0.00 0.00 0.00 5.36
1404 3179 0.250124 ACGTCGAAACTCATTGCCCA 60.250 50.000 0.00 0.00 0.00 5.36
1405 3180 0.871722 CGTCGAAACTCATTGCCCAA 59.128 50.000 0.00 0.00 0.00 4.12
1407 3182 1.200020 GTCGAAACTCATTGCCCAAGG 59.800 52.381 0.00 0.00 0.00 3.61
1408 3183 0.527565 CGAAACTCATTGCCCAAGGG 59.472 55.000 0.00 0.00 38.57 3.95
1420 3960 2.169769 TGCCCAAGGGTATAGAAAGACG 59.830 50.000 7.05 0.00 37.65 4.18
1421 3961 2.484947 GCCCAAGGGTATAGAAAGACGG 60.485 54.545 7.05 0.00 37.65 4.79
1422 3962 2.770232 CCCAAGGGTATAGAAAGACGGT 59.230 50.000 0.00 0.00 0.00 4.83
1424 3964 4.324022 CCCAAGGGTATAGAAAGACGGTTT 60.324 45.833 0.00 0.00 0.00 3.27
1425 3965 4.874396 CCAAGGGTATAGAAAGACGGTTTC 59.126 45.833 4.74 4.74 0.00 2.78
1426 3966 4.750021 AGGGTATAGAAAGACGGTTTCC 57.250 45.455 8.46 0.00 0.00 3.13
1428 3968 4.081254 AGGGTATAGAAAGACGGTTTCCAC 60.081 45.833 8.46 5.43 0.00 4.02
1430 3970 5.425630 GGTATAGAAAGACGGTTTCCACAT 58.574 41.667 8.46 4.07 0.00 3.21
1431 3971 5.522824 GGTATAGAAAGACGGTTTCCACATC 59.477 44.000 8.46 0.00 0.00 3.06
1434 3974 4.204012 AGAAAGACGGTTTCCACATCAAA 58.796 39.130 8.46 0.00 0.00 2.69
1435 3975 4.642885 AGAAAGACGGTTTCCACATCAAAA 59.357 37.500 8.46 0.00 0.00 2.44
1437 3977 4.301637 AGACGGTTTCCACATCAAAAAC 57.698 40.909 0.00 0.00 33.22 2.43
1439 3979 4.158764 AGACGGTTTCCACATCAAAAACAA 59.841 37.500 0.00 0.00 35.17 2.83
1441 3981 4.177026 CGGTTTCCACATCAAAAACAACA 58.823 39.130 0.00 0.00 35.17 3.33
1446 3986 7.324856 GGTTTCCACATCAAAAACAACAAAAAC 59.675 33.333 0.00 0.00 35.17 2.43
1447 3987 6.158175 TCCACATCAAAAACAACAAAAACG 57.842 33.333 0.00 0.00 0.00 3.60
1448 3988 5.926542 TCCACATCAAAAACAACAAAAACGA 59.073 32.000 0.00 0.00 0.00 3.85
1449 3989 6.090088 TCCACATCAAAAACAACAAAAACGAG 59.910 34.615 0.00 0.00 0.00 4.18
1451 3991 4.554162 TCAAAAACAACAAAAACGAGCG 57.446 36.364 0.00 0.00 0.00 5.03
1452 3992 3.080739 CAAAAACAACAAAAACGAGCGC 58.919 40.909 0.00 0.00 0.00 5.92
1454 3994 1.983972 AACAACAAAAACGAGCGCAA 58.016 40.000 11.47 0.00 0.00 4.85
1456 3996 1.651631 ACAACAAAAACGAGCGCAAAC 59.348 42.857 11.47 0.00 0.00 2.93
1457 3997 1.651138 CAACAAAAACGAGCGCAAACA 59.349 42.857 11.47 0.00 0.00 2.83
1458 3998 2.202295 ACAAAAACGAGCGCAAACAT 57.798 40.000 11.47 0.00 0.00 2.71
1459 3999 3.341857 ACAAAAACGAGCGCAAACATA 57.658 38.095 11.47 0.00 0.00 2.29
1460 4000 3.896122 ACAAAAACGAGCGCAAACATAT 58.104 36.364 11.47 0.00 0.00 1.78
1465 4005 7.428183 ACAAAAACGAGCGCAAACATATAATAG 59.572 33.333 11.47 0.00 0.00 1.73
1466 4006 4.647291 ACGAGCGCAAACATATAATAGC 57.353 40.909 11.47 0.00 0.00 2.97
1467 4007 3.121279 ACGAGCGCAAACATATAATAGCG 59.879 43.478 11.47 0.00 46.99 4.26
1468 4008 3.121279 CGAGCGCAAACATATAATAGCGT 59.879 43.478 11.47 0.00 46.09 5.07
1469 4009 4.322539 CGAGCGCAAACATATAATAGCGTA 59.677 41.667 11.47 0.00 46.09 4.42
1470 4010 5.004440 CGAGCGCAAACATATAATAGCGTAT 59.996 40.000 11.47 0.00 46.09 3.06
1471 4011 6.453791 CGAGCGCAAACATATAATAGCGTATT 60.454 38.462 11.47 0.00 46.09 1.89
1472 4012 6.762108 AGCGCAAACATATAATAGCGTATTC 58.238 36.000 11.47 0.00 46.09 1.75
1473 4013 5.666878 GCGCAAACATATAATAGCGTATTCG 59.333 40.000 0.30 0.00 46.09 3.34
1476 4016 7.411049 CGCAAACATATAATAGCGTATTCGGAA 60.411 37.037 0.00 0.00 40.25 4.30
1480 4020 8.997621 ACATATAATAGCGTATTCGGAATTGT 57.002 30.769 8.76 0.00 37.56 2.71
1483 4023 7.823149 ATAATAGCGTATTCGGAATTGTACC 57.177 36.000 8.76 0.00 37.56 3.34
1484 4024 2.830104 AGCGTATTCGGAATTGTACCC 58.170 47.619 8.76 0.00 37.56 3.69
1485 4025 2.168936 AGCGTATTCGGAATTGTACCCA 59.831 45.455 8.76 0.00 37.56 4.51
1487 4027 3.001939 GCGTATTCGGAATTGTACCCAAG 59.998 47.826 8.76 0.00 37.56 3.61
1489 4029 1.828979 TTCGGAATTGTACCCAAGCC 58.171 50.000 0.00 0.00 33.17 4.35
1491 4031 1.035385 CGGAATTGTACCCAAGCCCC 61.035 60.000 0.00 0.00 33.17 5.80
1492 4032 0.335019 GGAATTGTACCCAAGCCCCT 59.665 55.000 0.00 0.00 33.17 4.79
1493 4033 1.685180 GGAATTGTACCCAAGCCCCTC 60.685 57.143 0.00 0.00 33.17 4.30
1494 4034 0.335019 AATTGTACCCAAGCCCCTCC 59.665 55.000 0.00 0.00 33.17 4.30
1495 4035 1.580994 ATTGTACCCAAGCCCCTCCC 61.581 60.000 0.00 0.00 33.17 4.30
1498 4038 2.006415 TACCCAAGCCCCTCCCATG 61.006 63.158 0.00 0.00 0.00 3.66
1499 4039 4.147587 CCCAAGCCCCTCCCATGG 62.148 72.222 4.14 4.14 0.00 3.66
1500 4040 4.147587 CCAAGCCCCTCCCATGGG 62.148 72.222 26.30 26.30 46.56 4.00
1501 4041 3.350163 CAAGCCCCTCCCATGGGT 61.350 66.667 30.28 7.14 45.70 4.51
1502 4042 2.537959 AAGCCCCTCCCATGGGTT 60.538 61.111 30.28 13.43 45.70 4.11
1503 4043 2.626467 AAGCCCCTCCCATGGGTTC 61.626 63.158 30.28 15.00 45.70 3.62
1504 4044 3.023735 GCCCCTCCCATGGGTTCT 61.024 66.667 30.28 0.00 45.70 3.01
1505 4045 1.696314 GCCCCTCCCATGGGTTCTA 60.696 63.158 30.28 10.36 45.70 2.10
1507 4047 1.768725 GCCCCTCCCATGGGTTCTATA 60.769 57.143 30.28 9.15 45.70 1.31
1508 4048 1.985895 CCCCTCCCATGGGTTCTATAC 59.014 57.143 30.28 0.00 45.70 1.47
1509 4049 1.985895 CCCTCCCATGGGTTCTATACC 59.014 57.143 30.28 0.00 46.99 2.73
1524 4064 8.345724 GGTTCTATACCCGATTCATAACTAGA 57.654 38.462 0.00 0.00 41.43 2.43
1528 5066 8.521176 TCTATACCCGATTCATAACTAGAAAGC 58.479 37.037 0.00 0.00 0.00 3.51
1530 5068 5.990668 ACCCGATTCATAACTAGAAAGCTT 58.009 37.500 0.00 0.00 0.00 3.74
1538 5076 6.868622 TCATAACTAGAAAGCTTCTCTGGTC 58.131 40.000 19.84 6.75 41.14 4.02
1540 5078 3.785364 ACTAGAAAGCTTCTCTGGTCCT 58.215 45.455 16.33 0.00 41.14 3.85
1541 5079 4.164204 ACTAGAAAGCTTCTCTGGTCCTT 58.836 43.478 16.33 1.78 41.14 3.36
1542 5080 3.694043 AGAAAGCTTCTCTGGTCCTTC 57.306 47.619 0.00 0.00 34.07 3.46
1543 5081 2.975489 AGAAAGCTTCTCTGGTCCTTCA 59.025 45.455 0.00 0.00 34.07 3.02
1546 5084 3.176924 AGCTTCTCTGGTCCTTCACTA 57.823 47.619 0.00 0.00 0.00 2.74
1551 5089 1.204941 CTCTGGTCCTTCACTAACCGG 59.795 57.143 0.00 0.00 40.23 5.28
1552 5090 0.249398 CTGGTCCTTCACTAACCGGG 59.751 60.000 6.32 0.00 36.06 5.73
1553 5091 1.196104 TGGTCCTTCACTAACCGGGG 61.196 60.000 6.32 0.00 35.76 5.73
1554 5092 1.078637 GTCCTTCACTAACCGGGGC 60.079 63.158 6.32 0.00 0.00 5.80
1555 5093 1.229400 TCCTTCACTAACCGGGGCT 60.229 57.895 6.32 0.00 0.00 5.19
1561 5099 1.980036 TCACTAACCGGGGCTAAAAGT 59.020 47.619 6.32 0.00 0.00 2.66
1562 5100 2.027837 TCACTAACCGGGGCTAAAAGTC 60.028 50.000 6.32 0.00 0.00 3.01
1563 5101 1.280133 ACTAACCGGGGCTAAAAGTCC 59.720 52.381 6.32 0.00 39.92 3.85
1686 5370 1.138069 TCCGAAGCAAAGATATCCGCA 59.862 47.619 10.87 0.00 0.00 5.69
1692 5376 1.542108 GCAAAGATATCCGCAGAGGCT 60.542 52.381 0.00 0.00 40.77 4.58
1693 5377 2.289072 GCAAAGATATCCGCAGAGGCTA 60.289 50.000 0.00 0.00 40.77 3.93
1878 6760 2.234300 AAGCTCGAACGACCTTCAAA 57.766 45.000 0.00 0.00 0.00 2.69
2346 7474 5.006386 ACAGAAAGACCCTATGAAGCTTTG 58.994 41.667 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 5.930837 AATGACTGGACAAAACCAAGAAA 57.069 34.783 0.00 0.00 39.59 2.52
128 129 8.573035 GTTATTAATGACTGGACAAAACCAAGA 58.427 33.333 3.22 0.00 39.59 3.02
129 130 8.576442 AGTTATTAATGACTGGACAAAACCAAG 58.424 33.333 11.78 0.00 39.59 3.61
131 132 8.356657 CAAGTTATTAATGACTGGACAAAACCA 58.643 33.333 13.14 0.00 38.33 3.67
168 169 9.480538 CGAGCGTTCTTTCTATCTACTATTATC 57.519 37.037 0.00 0.00 0.00 1.75
169 170 9.001542 ACGAGCGTTCTTTCTATCTACTATTAT 57.998 33.333 0.00 0.00 0.00 1.28
170 171 8.375608 ACGAGCGTTCTTTCTATCTACTATTA 57.624 34.615 0.00 0.00 0.00 0.98
171 172 7.261829 ACGAGCGTTCTTTCTATCTACTATT 57.738 36.000 0.00 0.00 0.00 1.73
172 173 6.864360 ACGAGCGTTCTTTCTATCTACTAT 57.136 37.500 0.00 0.00 0.00 2.12
173 174 7.042187 CCTTACGAGCGTTCTTTCTATCTACTA 60.042 40.741 0.00 0.00 0.00 1.82
174 175 6.238429 CCTTACGAGCGTTCTTTCTATCTACT 60.238 42.308 0.00 0.00 0.00 2.57
175 176 5.908499 CCTTACGAGCGTTCTTTCTATCTAC 59.092 44.000 0.00 0.00 0.00 2.59
176 177 5.819379 TCCTTACGAGCGTTCTTTCTATCTA 59.181 40.000 0.00 0.00 0.00 1.98
177 178 4.639310 TCCTTACGAGCGTTCTTTCTATCT 59.361 41.667 0.00 0.00 0.00 1.98
178 179 4.918037 TCCTTACGAGCGTTCTTTCTATC 58.082 43.478 0.00 0.00 0.00 2.08
179 180 4.398673 ACTCCTTACGAGCGTTCTTTCTAT 59.601 41.667 0.00 0.00 43.01 1.98
180 181 3.755378 ACTCCTTACGAGCGTTCTTTCTA 59.245 43.478 0.00 0.00 43.01 2.10
181 182 2.557490 ACTCCTTACGAGCGTTCTTTCT 59.443 45.455 0.00 0.00 43.01 2.52
182 183 2.916089 GACTCCTTACGAGCGTTCTTTC 59.084 50.000 0.00 0.00 43.01 2.62
183 184 2.352519 GGACTCCTTACGAGCGTTCTTT 60.353 50.000 0.00 0.00 43.01 2.52
184 185 1.201880 GGACTCCTTACGAGCGTTCTT 59.798 52.381 0.00 0.00 43.01 2.52
185 186 0.810016 GGACTCCTTACGAGCGTTCT 59.190 55.000 0.00 0.00 43.01 3.01
186 187 0.810016 AGGACTCCTTACGAGCGTTC 59.190 55.000 0.00 0.00 43.01 3.95
187 188 2.119801 TAGGACTCCTTACGAGCGTT 57.880 50.000 1.94 0.00 43.01 4.84
188 189 2.345124 ATAGGACTCCTTACGAGCGT 57.655 50.000 1.94 0.00 43.01 5.07
189 190 2.617308 TCAATAGGACTCCTTACGAGCG 59.383 50.000 1.94 0.00 43.01 5.03
190 191 4.650754 TTCAATAGGACTCCTTACGAGC 57.349 45.455 1.94 0.00 43.01 5.03
191 192 5.105473 TGGTTTCAATAGGACTCCTTACGAG 60.105 44.000 1.94 0.00 44.95 4.18
192 193 4.773674 TGGTTTCAATAGGACTCCTTACGA 59.226 41.667 1.94 0.00 34.61 3.43
193 194 5.080969 TGGTTTCAATAGGACTCCTTACG 57.919 43.478 1.94 0.00 34.61 3.18
194 195 6.708285 TCTTGGTTTCAATAGGACTCCTTAC 58.292 40.000 1.94 0.00 34.61 2.34
195 196 6.945636 TCTTGGTTTCAATAGGACTCCTTA 57.054 37.500 1.94 0.00 34.61 2.69
196 197 5.843019 TCTTGGTTTCAATAGGACTCCTT 57.157 39.130 1.94 0.00 34.61 3.36
197 198 5.843019 TTCTTGGTTTCAATAGGACTCCT 57.157 39.130 2.31 2.31 37.71 3.69
198 199 8.753497 ATATTTCTTGGTTTCAATAGGACTCC 57.247 34.615 0.00 0.00 31.75 3.85
200 201 9.853177 CCTATATTTCTTGGTTTCAATAGGACT 57.147 33.333 0.00 0.00 33.32 3.85
201 202 8.568794 GCCTATATTTCTTGGTTTCAATAGGAC 58.431 37.037 8.81 0.00 33.32 3.85
202 203 7.724061 GGCCTATATTTCTTGGTTTCAATAGGA 59.276 37.037 8.81 0.00 33.32 2.94
203 204 7.725844 AGGCCTATATTTCTTGGTTTCAATAGG 59.274 37.037 1.29 0.00 34.05 2.57
204 205 8.571336 CAGGCCTATATTTCTTGGTTTCAATAG 58.429 37.037 3.98 0.00 31.75 1.73
205 206 7.014230 GCAGGCCTATATTTCTTGGTTTCAATA 59.986 37.037 3.98 0.00 31.75 1.90
206 207 6.183360 GCAGGCCTATATTTCTTGGTTTCAAT 60.183 38.462 3.98 0.00 31.75 2.57
207 208 5.127031 GCAGGCCTATATTTCTTGGTTTCAA 59.873 40.000 3.98 0.00 0.00 2.69
208 209 4.644685 GCAGGCCTATATTTCTTGGTTTCA 59.355 41.667 3.98 0.00 0.00 2.69
209 210 4.889995 AGCAGGCCTATATTTCTTGGTTTC 59.110 41.667 3.98 0.00 0.00 2.78
210 211 4.871822 AGCAGGCCTATATTTCTTGGTTT 58.128 39.130 3.98 0.00 0.00 3.27
211 212 4.526438 AGCAGGCCTATATTTCTTGGTT 57.474 40.909 3.98 0.00 0.00 3.67
212 213 4.210331 CAAGCAGGCCTATATTTCTTGGT 58.790 43.478 3.98 0.00 0.00 3.67
213 214 3.005155 GCAAGCAGGCCTATATTTCTTGG 59.995 47.826 3.98 0.00 32.49 3.61
214 215 4.234530 GCAAGCAGGCCTATATTTCTTG 57.765 45.455 3.98 12.86 34.32 3.02
226 227 2.677524 TGTGGATGGCAAGCAGGC 60.678 61.111 0.00 0.00 44.50 4.85
227 228 2.345760 GGTGTGGATGGCAAGCAGG 61.346 63.158 0.00 0.00 0.00 4.85
228 229 1.592400 CTGGTGTGGATGGCAAGCAG 61.592 60.000 0.00 0.00 32.47 4.24
229 230 1.604308 CTGGTGTGGATGGCAAGCA 60.604 57.895 0.00 0.00 0.00 3.91
230 231 0.895100 TTCTGGTGTGGATGGCAAGC 60.895 55.000 0.00 0.00 0.00 4.01
231 232 1.843368 ATTCTGGTGTGGATGGCAAG 58.157 50.000 0.00 0.00 0.00 4.01
232 233 2.575735 TCTATTCTGGTGTGGATGGCAA 59.424 45.455 0.00 0.00 0.00 4.52
233 234 2.195727 TCTATTCTGGTGTGGATGGCA 58.804 47.619 0.00 0.00 0.00 4.92
234 235 3.498774 ATCTATTCTGGTGTGGATGGC 57.501 47.619 0.00 0.00 0.00 4.40
235 236 5.541868 ACTCTATCTATTCTGGTGTGGATGG 59.458 44.000 0.00 0.00 0.00 3.51
236 237 6.662865 ACTCTATCTATTCTGGTGTGGATG 57.337 41.667 0.00 0.00 0.00 3.51
237 238 7.682787 AAACTCTATCTATTCTGGTGTGGAT 57.317 36.000 0.00 0.00 0.00 3.41
238 239 7.364762 GGAAAACTCTATCTATTCTGGTGTGGA 60.365 40.741 0.00 0.00 0.00 4.02
239 240 6.763610 GGAAAACTCTATCTATTCTGGTGTGG 59.236 42.308 0.00 0.00 0.00 4.17
240 241 6.477033 CGGAAAACTCTATCTATTCTGGTGTG 59.523 42.308 0.00 0.00 0.00 3.82
241 242 6.380274 TCGGAAAACTCTATCTATTCTGGTGT 59.620 38.462 0.00 0.00 0.00 4.16
242 243 6.806751 TCGGAAAACTCTATCTATTCTGGTG 58.193 40.000 0.00 0.00 0.00 4.17
243 244 7.342284 TCTTCGGAAAACTCTATCTATTCTGGT 59.658 37.037 0.00 0.00 0.00 4.00
244 245 7.717568 TCTTCGGAAAACTCTATCTATTCTGG 58.282 38.462 0.00 0.00 0.00 3.86
245 246 9.587772 TTTCTTCGGAAAACTCTATCTATTCTG 57.412 33.333 0.00 0.00 40.51 3.02
246 247 9.589111 GTTTCTTCGGAAAACTCTATCTATTCT 57.411 33.333 0.00 0.00 44.30 2.40
247 248 8.819015 GGTTTCTTCGGAAAACTCTATCTATTC 58.181 37.037 5.55 0.00 45.35 1.75
248 249 8.719560 GGTTTCTTCGGAAAACTCTATCTATT 57.280 34.615 5.55 0.00 45.35 1.73
259 260 3.813166 CACTAGCAGGTTTCTTCGGAAAA 59.187 43.478 0.00 0.00 44.30 2.29
260 261 3.399330 CACTAGCAGGTTTCTTCGGAAA 58.601 45.455 0.00 0.00 41.10 3.13
261 262 2.289444 CCACTAGCAGGTTTCTTCGGAA 60.289 50.000 0.00 0.00 0.00 4.30
262 263 1.275291 CCACTAGCAGGTTTCTTCGGA 59.725 52.381 0.00 0.00 0.00 4.55
263 264 1.275291 TCCACTAGCAGGTTTCTTCGG 59.725 52.381 2.09 0.00 0.00 4.30
264 265 2.231478 TCTCCACTAGCAGGTTTCTTCG 59.769 50.000 2.09 0.00 0.00 3.79
265 266 3.963428 TCTCCACTAGCAGGTTTCTTC 57.037 47.619 2.09 0.00 0.00 2.87
266 267 3.904339 TCTTCTCCACTAGCAGGTTTCTT 59.096 43.478 2.09 0.00 0.00 2.52
267 268 3.511477 TCTTCTCCACTAGCAGGTTTCT 58.489 45.455 2.09 0.00 0.00 2.52
268 269 3.963428 TCTTCTCCACTAGCAGGTTTC 57.037 47.619 2.09 0.00 0.00 2.78
269 270 4.706842 TTTCTTCTCCACTAGCAGGTTT 57.293 40.909 2.09 0.00 0.00 3.27
270 271 4.917906 ATTTCTTCTCCACTAGCAGGTT 57.082 40.909 2.09 0.00 0.00 3.50
271 272 4.917906 AATTTCTTCTCCACTAGCAGGT 57.082 40.909 2.09 0.00 0.00 4.00
272 273 7.687941 TTTTAATTTCTTCTCCACTAGCAGG 57.312 36.000 0.00 0.00 0.00 4.85
476 519 5.767168 ACAGTCCTTTCCTTTTTCTGATCAG 59.233 40.000 17.07 17.07 0.00 2.90
514 558 2.841442 AATTCTATCTACGCCCCAGC 57.159 50.000 0.00 0.00 0.00 4.85
856 1838 6.575244 ACCCATATCATCTTGACTTGGTTA 57.425 37.500 6.74 0.00 32.67 2.85
858 1840 4.443457 CGACCCATATCATCTTGACTTGGT 60.443 45.833 6.74 0.00 32.67 3.67
859 1841 4.060900 CGACCCATATCATCTTGACTTGG 58.939 47.826 2.16 2.16 33.73 3.61
860 1842 3.496130 GCGACCCATATCATCTTGACTTG 59.504 47.826 0.00 0.00 0.00 3.16
861 1843 3.495100 GGCGACCCATATCATCTTGACTT 60.495 47.826 0.00 0.00 0.00 3.01
862 1844 2.037772 GGCGACCCATATCATCTTGACT 59.962 50.000 0.00 0.00 0.00 3.41
863 1845 2.417719 GGCGACCCATATCATCTTGAC 58.582 52.381 0.00 0.00 0.00 3.18
864 1846 2.839486 GGCGACCCATATCATCTTGA 57.161 50.000 0.00 0.00 0.00 3.02
878 1860 3.579685 GCAAGAAGAAGGGGCGAC 58.420 61.111 0.00 0.00 0.00 5.19
881 1863 3.443925 GGCGCAAGAAGAAGGGGC 61.444 66.667 10.83 0.00 43.02 5.80
882 1864 1.178534 TTTGGCGCAAGAAGAAGGGG 61.179 55.000 10.83 0.00 43.02 4.79
883 1865 0.242017 CTTTGGCGCAAGAAGAAGGG 59.758 55.000 10.83 0.00 43.02 3.95
884 1866 1.238439 TCTTTGGCGCAAGAAGAAGG 58.762 50.000 10.83 0.00 43.02 3.46
885 1867 2.746362 AGATCTTTGGCGCAAGAAGAAG 59.254 45.455 18.79 5.66 43.02 2.85
886 1868 2.783135 AGATCTTTGGCGCAAGAAGAA 58.217 42.857 18.79 7.12 43.02 2.52
887 1869 2.479566 AGATCTTTGGCGCAAGAAGA 57.520 45.000 10.83 15.28 43.02 2.87
888 1870 3.181506 GGTAAGATCTTTGGCGCAAGAAG 60.182 47.826 14.36 10.01 43.02 2.85
889 1871 2.747446 GGTAAGATCTTTGGCGCAAGAA 59.253 45.455 14.36 0.00 43.02 2.52
890 1872 2.290008 TGGTAAGATCTTTGGCGCAAGA 60.290 45.455 14.36 11.56 43.02 3.02
891 1873 2.083774 TGGTAAGATCTTTGGCGCAAG 58.916 47.619 14.36 5.27 43.44 4.01
892 1874 2.192664 TGGTAAGATCTTTGGCGCAA 57.807 45.000 14.36 0.00 0.00 4.85
893 1875 2.418368 ATGGTAAGATCTTTGGCGCA 57.582 45.000 14.36 5.84 0.00 6.09
894 1876 3.489229 GGAAATGGTAAGATCTTTGGCGC 60.489 47.826 14.36 0.00 0.00 6.53
895 1877 3.242739 CGGAAATGGTAAGATCTTTGGCG 60.243 47.826 14.36 0.00 0.00 5.69
896 1878 3.945285 TCGGAAATGGTAAGATCTTTGGC 59.055 43.478 14.36 4.67 0.00 4.52
897 1879 5.066505 CCTTCGGAAATGGTAAGATCTTTGG 59.933 44.000 14.36 0.00 0.00 3.28
898 1880 5.880332 TCCTTCGGAAATGGTAAGATCTTTG 59.120 40.000 14.36 0.00 0.00 2.77
899 1881 6.062258 TCCTTCGGAAATGGTAAGATCTTT 57.938 37.500 14.36 0.00 0.00 2.52
900 1882 5.693769 TCCTTCGGAAATGGTAAGATCTT 57.306 39.130 13.56 13.56 0.00 2.40
901 1883 5.189934 AGTTCCTTCGGAAATGGTAAGATCT 59.810 40.000 0.00 0.00 43.86 2.75
902 1884 5.429130 AGTTCCTTCGGAAATGGTAAGATC 58.571 41.667 0.00 0.00 43.86 2.75
903 1885 5.437191 AGTTCCTTCGGAAATGGTAAGAT 57.563 39.130 0.00 0.00 43.86 2.40
904 1886 4.903045 AGTTCCTTCGGAAATGGTAAGA 57.097 40.909 0.00 0.00 43.86 2.10
911 1893 0.323451 GCCCCAGTTCCTTCGGAAAT 60.323 55.000 0.00 0.00 43.86 2.17
912 1894 1.074248 GCCCCAGTTCCTTCGGAAA 59.926 57.895 0.00 0.00 43.86 3.13
913 1895 2.754375 GCCCCAGTTCCTTCGGAA 59.246 61.111 0.00 0.00 39.66 4.30
914 1896 3.702048 CGCCCCAGTTCCTTCGGA 61.702 66.667 0.00 0.00 0.00 4.55
915 1897 3.546714 AACGCCCCAGTTCCTTCGG 62.547 63.158 0.00 0.00 0.00 4.30
916 1898 1.574702 GAAACGCCCCAGTTCCTTCG 61.575 60.000 0.00 0.00 32.43 3.79
917 1899 1.241990 GGAAACGCCCCAGTTCCTTC 61.242 60.000 0.00 0.00 32.43 3.46
918 1900 1.228459 GGAAACGCCCCAGTTCCTT 60.228 57.895 0.00 0.00 32.43 3.36
919 1901 1.716028 AAGGAAACGCCCCAGTTCCT 61.716 55.000 0.00 0.00 37.37 3.36
920 1902 0.826256 AAAGGAAACGCCCCAGTTCC 60.826 55.000 0.00 0.00 37.37 3.62
921 1903 1.000607 GAAAAGGAAACGCCCCAGTTC 60.001 52.381 0.00 0.00 37.37 3.01
922 1904 1.037493 GAAAAGGAAACGCCCCAGTT 58.963 50.000 0.00 0.00 37.37 3.16
923 1905 0.826256 GGAAAAGGAAACGCCCCAGT 60.826 55.000 0.00 0.00 37.37 4.00
924 1906 0.539669 AGGAAAAGGAAACGCCCCAG 60.540 55.000 0.00 0.00 37.37 4.45
925 1907 0.772384 TAGGAAAAGGAAACGCCCCA 59.228 50.000 0.00 0.00 37.37 4.96
926 1908 1.271762 ACTAGGAAAAGGAAACGCCCC 60.272 52.381 0.00 0.00 37.37 5.80
927 1909 2.195741 ACTAGGAAAAGGAAACGCCC 57.804 50.000 0.00 0.00 37.37 6.13
928 1910 3.409570 AGAACTAGGAAAAGGAAACGCC 58.590 45.455 0.00 0.00 0.00 5.68
929 1911 4.755629 AGAAGAACTAGGAAAAGGAAACGC 59.244 41.667 0.00 0.00 0.00 4.84
930 1912 6.073167 GGAAGAAGAACTAGGAAAAGGAAACG 60.073 42.308 0.00 0.00 0.00 3.60
931 1913 6.771267 TGGAAGAAGAACTAGGAAAAGGAAAC 59.229 38.462 0.00 0.00 0.00 2.78
1059 2041 1.471501 GGTAAACGCCCCGTAGTAAGG 60.472 57.143 0.00 0.00 39.99 2.69
1265 2247 3.246112 CACGTGGAAGGGGTGGGA 61.246 66.667 7.95 0.00 0.00 4.37
1326 2308 5.302360 TCGTGCTTATCTTAGTTGTTGGTT 58.698 37.500 0.00 0.00 0.00 3.67
1327 2309 4.890088 TCGTGCTTATCTTAGTTGTTGGT 58.110 39.130 0.00 0.00 0.00 3.67
1328 2310 5.856126 TTCGTGCTTATCTTAGTTGTTGG 57.144 39.130 0.00 0.00 0.00 3.77
1329 2311 8.015087 TGATTTTCGTGCTTATCTTAGTTGTTG 58.985 33.333 0.00 0.00 0.00 3.33
1330 2312 8.094798 TGATTTTCGTGCTTATCTTAGTTGTT 57.905 30.769 0.00 0.00 0.00 2.83
1331 2313 7.667043 TGATTTTCGTGCTTATCTTAGTTGT 57.333 32.000 0.00 0.00 0.00 3.32
1332 2314 8.948853 TTTGATTTTCGTGCTTATCTTAGTTG 57.051 30.769 0.00 0.00 0.00 3.16
1333 2315 7.750903 GCTTTGATTTTCGTGCTTATCTTAGTT 59.249 33.333 0.00 0.00 0.00 2.24
1335 2317 7.467623 AGCTTTGATTTTCGTGCTTATCTTAG 58.532 34.615 0.00 0.00 0.00 2.18
1337 2319 6.259550 AGCTTTGATTTTCGTGCTTATCTT 57.740 33.333 0.00 0.00 0.00 2.40
1338 2320 5.886960 AGCTTTGATTTTCGTGCTTATCT 57.113 34.783 0.00 0.00 0.00 1.98
1339 2321 6.086222 TGAAGCTTTGATTTTCGTGCTTATC 58.914 36.000 0.00 0.00 40.26 1.75
1340 2322 6.012658 TGAAGCTTTGATTTTCGTGCTTAT 57.987 33.333 0.00 0.00 40.26 1.73
1344 2942 6.689178 TTATTGAAGCTTTGATTTTCGTGC 57.311 33.333 0.00 0.00 0.00 5.34
1345 2943 9.356929 GTTTTTATTGAAGCTTTGATTTTCGTG 57.643 29.630 0.00 0.00 0.00 4.35
1357 2955 9.515226 TTAGGTGTATCTGTTTTTATTGAAGCT 57.485 29.630 0.00 0.00 0.00 3.74
1365 2963 8.458052 TCGACGTATTAGGTGTATCTGTTTTTA 58.542 33.333 0.00 0.00 0.00 1.52
1366 2964 7.315142 TCGACGTATTAGGTGTATCTGTTTTT 58.685 34.615 0.00 0.00 0.00 1.94
1367 2965 6.855836 TCGACGTATTAGGTGTATCTGTTTT 58.144 36.000 0.00 0.00 0.00 2.43
1368 2966 6.441093 TCGACGTATTAGGTGTATCTGTTT 57.559 37.500 0.00 0.00 0.00 2.83
1369 2967 6.441093 TTCGACGTATTAGGTGTATCTGTT 57.559 37.500 0.00 0.00 0.00 3.16
1372 2970 6.317140 TGAGTTTCGACGTATTAGGTGTATCT 59.683 38.462 0.00 0.00 0.00 1.98
1373 2971 6.489675 TGAGTTTCGACGTATTAGGTGTATC 58.510 40.000 0.00 0.00 0.00 2.24
1375 2973 5.878332 TGAGTTTCGACGTATTAGGTGTA 57.122 39.130 0.00 0.00 0.00 2.90
1377 2975 5.500290 GCAATGAGTTTCGACGTATTAGGTG 60.500 44.000 0.00 0.00 0.00 4.00
1378 2976 4.565564 GCAATGAGTTTCGACGTATTAGGT 59.434 41.667 0.00 0.00 0.00 3.08
1379 2977 4.025979 GGCAATGAGTTTCGACGTATTAGG 60.026 45.833 0.00 0.00 0.00 2.69
1380 2978 4.025979 GGGCAATGAGTTTCGACGTATTAG 60.026 45.833 0.00 0.00 0.00 1.73
1381 2979 3.866910 GGGCAATGAGTTTCGACGTATTA 59.133 43.478 0.00 0.00 0.00 0.98
1382 2980 2.676342 GGGCAATGAGTTTCGACGTATT 59.324 45.455 0.00 0.00 0.00 1.89
1383 2981 2.277084 GGGCAATGAGTTTCGACGTAT 58.723 47.619 0.00 0.00 0.00 3.06
1384 2982 1.001068 TGGGCAATGAGTTTCGACGTA 59.999 47.619 0.00 0.00 0.00 3.57
1394 3169 4.437682 TTCTATACCCTTGGGCAATGAG 57.562 45.455 5.46 0.00 0.00 2.90
1397 3172 4.686122 CGTCTTTCTATACCCTTGGGCAAT 60.686 45.833 5.46 2.67 0.00 3.56
1398 3173 3.370103 CGTCTTTCTATACCCTTGGGCAA 60.370 47.826 5.46 0.00 0.00 4.52
1400 3175 2.484947 CCGTCTTTCTATACCCTTGGGC 60.485 54.545 5.46 0.00 0.00 5.36
1401 3176 2.770232 ACCGTCTTTCTATACCCTTGGG 59.230 50.000 3.77 3.77 0.00 4.12
1402 3177 4.482952 AACCGTCTTTCTATACCCTTGG 57.517 45.455 0.00 0.00 0.00 3.61
1403 3178 4.874396 GGAAACCGTCTTTCTATACCCTTG 59.126 45.833 3.58 0.00 0.00 3.61
1404 3179 4.533311 TGGAAACCGTCTTTCTATACCCTT 59.467 41.667 3.58 0.00 0.00 3.95
1405 3180 4.081254 GTGGAAACCGTCTTTCTATACCCT 60.081 45.833 3.58 0.00 0.00 4.34
1407 3182 4.824289 TGTGGAAACCGTCTTTCTATACC 58.176 43.478 3.58 0.00 0.00 2.73
1408 3183 6.103997 TGATGTGGAAACCGTCTTTCTATAC 58.896 40.000 3.58 2.61 0.00 1.47
1420 3960 6.487689 TTTGTTGTTTTTGATGTGGAAACC 57.512 33.333 0.00 0.00 33.49 3.27
1421 3961 7.058920 CGTTTTTGTTGTTTTTGATGTGGAAAC 59.941 33.333 0.00 0.00 34.67 2.78
1422 3962 7.042051 TCGTTTTTGTTGTTTTTGATGTGGAAA 60.042 29.630 0.00 0.00 0.00 3.13
1424 3964 5.926542 TCGTTTTTGTTGTTTTTGATGTGGA 59.073 32.000 0.00 0.00 0.00 4.02
1425 3965 6.158175 TCGTTTTTGTTGTTTTTGATGTGG 57.842 33.333 0.00 0.00 0.00 4.17
1426 3966 5.727592 GCTCGTTTTTGTTGTTTTTGATGTG 59.272 36.000 0.00 0.00 0.00 3.21
1428 3968 4.949104 CGCTCGTTTTTGTTGTTTTTGATG 59.051 37.500 0.00 0.00 0.00 3.07
1430 3970 3.181539 GCGCTCGTTTTTGTTGTTTTTGA 60.182 39.130 0.00 0.00 0.00 2.69
1431 3971 3.080739 GCGCTCGTTTTTGTTGTTTTTG 58.919 40.909 0.00 0.00 0.00 2.44
1434 3974 1.983972 TGCGCTCGTTTTTGTTGTTT 58.016 40.000 9.73 0.00 0.00 2.83
1435 3975 1.983972 TTGCGCTCGTTTTTGTTGTT 58.016 40.000 9.73 0.00 0.00 2.83
1437 3977 1.651138 TGTTTGCGCTCGTTTTTGTTG 59.349 42.857 9.73 0.00 0.00 3.33
1439 3979 2.202295 ATGTTTGCGCTCGTTTTTGT 57.798 40.000 9.73 0.00 0.00 2.83
1441 3981 6.413818 GCTATTATATGTTTGCGCTCGTTTTT 59.586 34.615 9.73 0.00 0.00 1.94
1446 3986 3.121279 ACGCTATTATATGTTTGCGCTCG 59.879 43.478 9.73 0.00 46.03 5.03
1447 3987 4.647291 ACGCTATTATATGTTTGCGCTC 57.353 40.909 9.73 0.00 46.03 5.03
1448 3988 6.453791 CGAATACGCTATTATATGTTTGCGCT 60.454 38.462 9.73 0.00 46.03 5.92
1449 3989 5.666878 CGAATACGCTATTATATGTTTGCGC 59.333 40.000 0.00 0.00 46.03 6.09
1451 3991 7.285783 TCCGAATACGCTATTATATGTTTGC 57.714 36.000 0.00 0.00 38.29 3.68
1454 3994 9.431887 ACAATTCCGAATACGCTATTATATGTT 57.568 29.630 0.00 0.00 38.29 2.71
1457 3997 9.525409 GGTACAATTCCGAATACGCTATTATAT 57.475 33.333 0.00 0.00 38.29 0.86
1458 3998 7.975616 GGGTACAATTCCGAATACGCTATTATA 59.024 37.037 0.00 0.00 38.29 0.98
1459 3999 6.815142 GGGTACAATTCCGAATACGCTATTAT 59.185 38.462 0.00 0.00 38.29 1.28
1460 4000 6.158598 GGGTACAATTCCGAATACGCTATTA 58.841 40.000 0.00 0.00 38.29 0.98
1465 4005 2.553086 TGGGTACAATTCCGAATACGC 58.447 47.619 0.00 0.00 38.29 4.42
1466 4006 3.001939 GCTTGGGTACAATTCCGAATACG 59.998 47.826 0.00 0.00 35.73 3.06
1467 4007 3.314357 GGCTTGGGTACAATTCCGAATAC 59.686 47.826 0.00 0.00 35.73 1.89
1468 4008 3.547746 GGCTTGGGTACAATTCCGAATA 58.452 45.455 0.00 0.00 35.73 1.75
1469 4009 2.375146 GGCTTGGGTACAATTCCGAAT 58.625 47.619 0.00 0.00 35.73 3.34
1470 4010 1.614850 GGGCTTGGGTACAATTCCGAA 60.615 52.381 0.00 0.00 35.73 4.30
1471 4011 0.034863 GGGCTTGGGTACAATTCCGA 60.035 55.000 0.00 0.00 35.73 4.55
1472 4012 1.035385 GGGGCTTGGGTACAATTCCG 61.035 60.000 0.00 0.00 35.73 4.30
1473 4013 0.335019 AGGGGCTTGGGTACAATTCC 59.665 55.000 0.00 0.00 35.73 3.01
1476 4016 1.580994 GGGAGGGGCTTGGGTACAAT 61.581 60.000 0.00 0.00 35.73 2.71
1478 4018 2.612746 GGGAGGGGCTTGGGTACA 60.613 66.667 0.00 0.00 0.00 2.90
1479 4019 2.006991 ATGGGAGGGGCTTGGGTAC 61.007 63.158 0.00 0.00 0.00 3.34
1480 4020 2.006415 CATGGGAGGGGCTTGGGTA 61.006 63.158 0.00 0.00 0.00 3.69
1482 4022 4.147587 CCATGGGAGGGGCTTGGG 62.148 72.222 2.85 0.00 0.00 4.12
1483 4023 4.147587 CCCATGGGAGGGGCTTGG 62.148 72.222 28.27 0.00 45.60 3.61
1502 4042 8.521176 GCTTTCTAGTTATGAATCGGGTATAGA 58.479 37.037 0.00 0.00 0.00 1.98
1503 4043 8.524487 AGCTTTCTAGTTATGAATCGGGTATAG 58.476 37.037 0.00 0.00 0.00 1.31
1504 4044 8.418597 AGCTTTCTAGTTATGAATCGGGTATA 57.581 34.615 0.00 0.00 0.00 1.47
1505 4045 7.304497 AGCTTTCTAGTTATGAATCGGGTAT 57.696 36.000 0.00 0.00 0.00 2.73
1507 4047 5.615925 AGCTTTCTAGTTATGAATCGGGT 57.384 39.130 0.00 0.00 0.00 5.28
1508 4048 6.284459 AGAAGCTTTCTAGTTATGAATCGGG 58.716 40.000 0.00 0.00 38.49 5.14
1509 4049 7.168972 CAGAGAAGCTTTCTAGTTATGAATCGG 59.831 40.741 0.00 0.00 40.87 4.18
1510 4050 7.168972 CCAGAGAAGCTTTCTAGTTATGAATCG 59.831 40.741 0.00 0.00 40.87 3.34
1513 4053 7.246171 ACCAGAGAAGCTTTCTAGTTATGAA 57.754 36.000 0.00 0.00 40.87 2.57
1514 4054 6.127310 GGACCAGAGAAGCTTTCTAGTTATGA 60.127 42.308 0.00 0.00 40.87 2.15
1515 4055 6.045955 GGACCAGAGAAGCTTTCTAGTTATG 58.954 44.000 0.00 0.00 40.87 1.90
1518 4058 4.164204 AGGACCAGAGAAGCTTTCTAGTT 58.836 43.478 0.00 0.00 40.87 2.24
1519 4059 3.785364 AGGACCAGAGAAGCTTTCTAGT 58.215 45.455 0.00 5.02 40.87 2.57
1520 4060 4.221703 TGAAGGACCAGAGAAGCTTTCTAG 59.778 45.833 0.00 1.75 40.87 2.43
1521 4061 4.021016 GTGAAGGACCAGAGAAGCTTTCTA 60.021 45.833 0.00 0.00 40.87 2.10
1524 4064 2.708325 AGTGAAGGACCAGAGAAGCTTT 59.292 45.455 0.00 0.00 0.00 3.51
1528 5066 3.367498 CGGTTAGTGAAGGACCAGAGAAG 60.367 52.174 0.00 0.00 32.95 2.85
1530 5068 2.168496 CGGTTAGTGAAGGACCAGAGA 58.832 52.381 0.00 0.00 32.95 3.10
1538 5076 0.906775 TTAGCCCCGGTTAGTGAAGG 59.093 55.000 0.00 0.00 0.00 3.46
1540 5078 2.372837 ACTTTTAGCCCCGGTTAGTGAA 59.627 45.455 0.00 0.00 0.00 3.18
1541 5079 1.980036 ACTTTTAGCCCCGGTTAGTGA 59.020 47.619 0.00 0.00 0.00 3.41
1542 5080 2.353323 GACTTTTAGCCCCGGTTAGTG 58.647 52.381 0.00 0.00 0.00 2.74
1543 5081 1.280133 GGACTTTTAGCCCCGGTTAGT 59.720 52.381 0.00 0.00 0.00 2.24
1546 5084 0.037734 CAGGACTTTTAGCCCCGGTT 59.962 55.000 0.00 0.00 0.00 4.44
1551 5089 2.200373 TTGAGCAGGACTTTTAGCCC 57.800 50.000 0.00 0.00 0.00 5.19
1552 5090 2.229062 GGTTTGAGCAGGACTTTTAGCC 59.771 50.000 0.00 0.00 0.00 3.93
1553 5091 2.095718 CGGTTTGAGCAGGACTTTTAGC 60.096 50.000 0.00 0.00 0.00 3.09
1554 5092 2.484264 CCGGTTTGAGCAGGACTTTTAG 59.516 50.000 0.00 0.00 0.00 1.85
1555 5093 2.105134 TCCGGTTTGAGCAGGACTTTTA 59.895 45.455 0.00 0.00 0.00 1.52
1561 5099 0.250295 CAGTTCCGGTTTGAGCAGGA 60.250 55.000 0.00 0.00 0.00 3.86
1562 5100 1.856265 GCAGTTCCGGTTTGAGCAGG 61.856 60.000 0.00 0.00 0.00 4.85
1563 5101 0.886490 AGCAGTTCCGGTTTGAGCAG 60.886 55.000 0.00 0.00 0.00 4.24
1686 5370 5.104318 CCTTCTTACCCTGAAAATAGCCTCT 60.104 44.000 0.00 0.00 0.00 3.69
1692 5376 6.273889 TCTACCCCTTCTTACCCTGAAAATA 58.726 40.000 0.00 0.00 0.00 1.40
1693 5377 5.105853 TCTACCCCTTCTTACCCTGAAAAT 58.894 41.667 0.00 0.00 0.00 1.82
1897 6779 0.838608 TACCCACCTGTGTCGGTTTT 59.161 50.000 3.98 0.00 34.29 2.43
2346 7474 2.054453 GCCAATCCCAGGGAACAGC 61.054 63.158 13.94 11.79 34.34 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.