Multiple sequence alignment - TraesCS6B01G250400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G250400 chr6B 100.000 2174 0 0 1 2174 450074649 450072476 0.000000e+00 4015.0
1 TraesCS6B01G250400 chr5A 98.924 929 10 0 1 929 559028465 559029393 0.000000e+00 1661.0
2 TraesCS6B01G250400 chr1A 98.924 929 10 0 1 929 554485506 554484578 0.000000e+00 1661.0
3 TraesCS6B01G250400 chr1A 96.053 228 8 1 1812 2038 182137398 182137625 9.480000e-99 370.0
4 TraesCS6B01G250400 chr1A 95.614 228 9 1 1812 2038 182129738 182129965 4.410000e-97 364.0
5 TraesCS6B01G250400 chr2B 98.921 927 10 0 3 929 683730924 683729998 0.000000e+00 1657.0
6 TraesCS6B01G250400 chr2B 97.143 245 5 1 1383 1627 110646754 110646996 1.550000e-111 412.0
7 TraesCS6B01G250400 chr3A 98.816 929 11 0 1 929 593310006 593309078 0.000000e+00 1655.0
8 TraesCS6B01G250400 chr3A 98.493 929 14 0 1 929 105553475 105554403 0.000000e+00 1639.0
9 TraesCS6B01G250400 chrUn 98.708 929 12 0 1 929 345935746 345936674 0.000000e+00 1650.0
10 TraesCS6B01G250400 chrUn 98.684 456 6 0 930 1385 354078452 354077997 0.000000e+00 809.0
11 TraesCS6B01G250400 chrUn 99.038 104 1 0 2071 2174 425345829 425345932 1.020000e-43 187.0
12 TraesCS6B01G250400 chrUn 100.000 38 0 0 1956 1993 231483878 231483915 1.080000e-08 71.3
13 TraesCS6B01G250400 chrUn 100.000 38 0 0 1956 1993 244849224 244849187 1.080000e-08 71.3
14 TraesCS6B01G250400 chr7B 98.708 929 12 0 1 929 662751585 662752513 0.000000e+00 1650.0
15 TraesCS6B01G250400 chr5D 98.493 929 14 0 1 929 503316987 503316059 0.000000e+00 1639.0
16 TraesCS6B01G250400 chr5D 98.385 929 15 0 1 929 503342926 503341998 0.000000e+00 1633.0
17 TraesCS6B01G250400 chr5D 96.115 798 8 11 1383 2173 512414244 512413463 0.000000e+00 1280.0
18 TraesCS6B01G250400 chr5D 95.990 798 10 3 1383 2173 503296876 503296094 0.000000e+00 1277.0
19 TraesCS6B01G250400 chr5D 95.232 797 16 5 1383 2173 6271005 6271785 0.000000e+00 1242.0
20 TraesCS6B01G250400 chr5D 95.101 796 15 5 1383 2173 6171940 6172716 0.000000e+00 1232.0
21 TraesCS6B01G250400 chr5D 99.123 456 4 0 930 1385 503225739 503225284 0.000000e+00 821.0
22 TraesCS6B01G250400 chr5D 99.123 456 4 0 930 1385 503270806 503271261 0.000000e+00 821.0
23 TraesCS6B01G250400 chr5D 98.904 456 5 0 930 1385 503240305 503239850 0.000000e+00 815.0
24 TraesCS6B01G250400 chr5D 98.684 456 6 0 930 1385 503230523 503230068 0.000000e+00 809.0
25 TraesCS6B01G250400 chr5D 97.990 398 7 1 1776 2173 345941880 345941484 0.000000e+00 689.0
26 TraesCS6B01G250400 chr1D 98.505 669 9 1 1506 2173 491424048 491424716 0.000000e+00 1179.0
27 TraesCS6B01G250400 chr1D 93.601 797 22 7 1383 2174 51866957 51867729 0.000000e+00 1162.0
28 TraesCS6B01G250400 chr1D 93.467 796 11 7 1383 2173 254440010 254439251 0.000000e+00 1144.0
29 TraesCS6B01G250400 chr1D 95.751 659 5 4 1383 2034 491423420 491424062 0.000000e+00 1040.0
30 TraesCS6B01G250400 chr1D 98.678 454 4 2 1721 2174 459908766 459909217 0.000000e+00 804.0
31 TraesCS6B01G250400 chr1D 98.895 181 2 0 1778 1958 419382786 419382966 7.480000e-85 324.0
32 TraesCS6B01G250400 chr1D 100.000 55 0 0 1963 2017 101940357 101940411 3.820000e-18 102.0
33 TraesCS6B01G250400 chr1D 100.000 47 0 0 1509 1555 190347106 190347152 1.070000e-13 87.9
34 TraesCS6B01G250400 chr4D 92.848 797 16 4 1383 2174 19873485 19872725 0.000000e+00 1118.0
35 TraesCS6B01G250400 chr4D 98.684 456 5 1 930 1385 177441922 177442376 0.000000e+00 808.0
36 TraesCS6B01G250400 chr4D 98.433 383 6 0 1655 2037 426246648 426247030 0.000000e+00 675.0
37 TraesCS6B01G250400 chr4D 87.805 246 17 6 1383 1620 49515935 49515695 2.130000e-70 276.0
38 TraesCS6B01G250400 chr4D 98.876 89 1 0 1830 1918 251596861 251596949 2.230000e-35 159.0
39 TraesCS6B01G250400 chr4D 86.364 132 2 2 1552 1683 214395013 214394898 1.750000e-26 130.0
40 TraesCS6B01G250400 chr4D 95.588 68 3 0 1468 1535 348379320 348379253 2.280000e-20 110.0
41 TraesCS6B01G250400 chr3D 94.331 635 13 8 1383 2012 235621517 235620901 0.000000e+00 952.0
42 TraesCS6B01G250400 chr3D 98.904 456 3 1 930 1385 589268398 589268851 0.000000e+00 813.0
43 TraesCS6B01G250400 chr3D 99.029 103 1 0 2072 2174 445616141 445616243 3.690000e-43 185.0
44 TraesCS6B01G250400 chr3D 97.778 90 1 1 1496 1585 457189683 457189771 1.040000e-33 154.0
45 TraesCS6B01G250400 chr3D 94.505 91 2 3 1473 1563 508629245 508629332 1.050000e-28 137.0
46 TraesCS6B01G250400 chr3D 91.525 59 0 1 1383 1436 485923896 485923954 2.310000e-10 76.8
47 TraesCS6B01G250400 chr4A 97.196 535 13 2 1641 2174 309485074 309485607 0.000000e+00 904.0
48 TraesCS6B01G250400 chr4A 99.352 463 3 0 1712 2174 716259963 716260425 0.000000e+00 839.0
49 TraesCS6B01G250400 chr6D 99.123 456 4 0 930 1385 389252198 389251743 0.000000e+00 821.0
50 TraesCS6B01G250400 chr6D 100.000 184 0 0 1763 1946 429807949 429808132 7.430000e-90 340.0
51 TraesCS6B01G250400 chr6D 98.039 153 3 0 1626 1778 429809740 429809588 1.280000e-67 267.0
52 TraesCS6B01G250400 chr6D 83.203 256 18 4 1459 1714 326537100 326536870 6.080000e-51 211.0
53 TraesCS6B01G250400 chr6D 96.104 77 3 0 2033 2109 383710996 383710920 2.270000e-25 126.0
54 TraesCS6B01G250400 chr6D 90.426 94 9 0 1831 1924 363825511 363825418 8.150000e-25 124.0
55 TraesCS6B01G250400 chr6D 98.387 62 1 0 1976 2037 137817284 137817223 2.280000e-20 110.0
56 TraesCS6B01G250400 chr6D 96.875 64 2 0 1623 1686 157978261 157978198 8.210000e-20 108.0
57 TraesCS6B01G250400 chr6D 97.297 37 1 0 1383 1419 53069827 53069791 1.800000e-06 63.9
58 TraesCS6B01G250400 chr3B 98.684 456 6 0 930 1385 201534550 201534095 0.000000e+00 809.0
59 TraesCS6B01G250400 chr3B 98.450 258 4 0 1383 1640 796326936 796326679 2.540000e-124 455.0
60 TraesCS6B01G250400 chr7D 97.625 421 8 1 1623 2043 561711124 561711542 0.000000e+00 721.0
61 TraesCS6B01G250400 chr2D 92.371 367 7 4 1383 1744 638429406 638429056 8.960000e-139 503.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G250400 chr6B 450072476 450074649 2173 True 4015.0 4015 100.000 1 2174 1 chr6B.!!$R1 2173
1 TraesCS6B01G250400 chr5A 559028465 559029393 928 False 1661.0 1661 98.924 1 929 1 chr5A.!!$F1 928
2 TraesCS6B01G250400 chr1A 554484578 554485506 928 True 1661.0 1661 98.924 1 929 1 chr1A.!!$R1 928
3 TraesCS6B01G250400 chr2B 683729998 683730924 926 True 1657.0 1657 98.921 3 929 1 chr2B.!!$R1 926
4 TraesCS6B01G250400 chr3A 593309078 593310006 928 True 1655.0 1655 98.816 1 929 1 chr3A.!!$R1 928
5 TraesCS6B01G250400 chr3A 105553475 105554403 928 False 1639.0 1639 98.493 1 929 1 chr3A.!!$F1 928
6 TraesCS6B01G250400 chrUn 345935746 345936674 928 False 1650.0 1650 98.708 1 929 1 chrUn.!!$F2 928
7 TraesCS6B01G250400 chr7B 662751585 662752513 928 False 1650.0 1650 98.708 1 929 1 chr7B.!!$F1 928
8 TraesCS6B01G250400 chr5D 503316059 503316987 928 True 1639.0 1639 98.493 1 929 1 chr5D.!!$R6 928
9 TraesCS6B01G250400 chr5D 503341998 503342926 928 True 1633.0 1633 98.385 1 929 1 chr5D.!!$R7 928
10 TraesCS6B01G250400 chr5D 512413463 512414244 781 True 1280.0 1280 96.115 1383 2173 1 chr5D.!!$R8 790
11 TraesCS6B01G250400 chr5D 503296094 503296876 782 True 1277.0 1277 95.990 1383 2173 1 chr5D.!!$R5 790
12 TraesCS6B01G250400 chr5D 6271005 6271785 780 False 1242.0 1242 95.232 1383 2173 1 chr5D.!!$F2 790
13 TraesCS6B01G250400 chr5D 6171940 6172716 776 False 1232.0 1232 95.101 1383 2173 1 chr5D.!!$F1 790
14 TraesCS6B01G250400 chr1D 51866957 51867729 772 False 1162.0 1162 93.601 1383 2174 1 chr1D.!!$F1 791
15 TraesCS6B01G250400 chr1D 254439251 254440010 759 True 1144.0 1144 93.467 1383 2173 1 chr1D.!!$R1 790
16 TraesCS6B01G250400 chr1D 491423420 491424716 1296 False 1109.5 1179 97.128 1383 2173 2 chr1D.!!$F6 790
17 TraesCS6B01G250400 chr4D 19872725 19873485 760 True 1118.0 1118 92.848 1383 2174 1 chr4D.!!$R1 791
18 TraesCS6B01G250400 chr3D 235620901 235621517 616 True 952.0 952 94.331 1383 2012 1 chr3D.!!$R1 629
19 TraesCS6B01G250400 chr4A 309485074 309485607 533 False 904.0 904 97.196 1641 2174 1 chr4A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 998 0.981277 TCCTAGCGGGAAAAGGAGGG 60.981 60.0 0.0 0.0 41.91 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2625 1.134729 GCGGGATGGATGCATTTTTGT 60.135 47.619 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 184 2.171341 AGAGAAAACCGTTCCAGCTC 57.829 50.000 0.00 0.00 0.00 4.09
187 188 2.104963 AGAAAACCGTTCCAGCTCTTCT 59.895 45.455 0.00 0.00 0.00 2.85
194 195 4.253685 CCGTTCCAGCTCTTCTTGAATAA 58.746 43.478 0.00 0.00 30.40 1.40
433 434 2.503920 ATTCCCTTAATCGTCGACCG 57.496 50.000 10.58 5.50 38.13 4.79
738 739 4.546829 TTGGTAAAGCGGTCATACTTCT 57.453 40.909 9.49 0.00 0.00 2.85
929 930 2.359598 GTTCGCGGTGCATAAAATACG 58.640 47.619 6.13 0.00 0.00 3.06
930 931 1.923899 TCGCGGTGCATAAAATACGA 58.076 45.000 6.13 0.00 0.00 3.43
931 932 2.269172 TCGCGGTGCATAAAATACGAA 58.731 42.857 6.13 0.00 0.00 3.85
932 933 2.671888 TCGCGGTGCATAAAATACGAAA 59.328 40.909 6.13 0.00 0.00 3.46
933 934 2.774074 CGCGGTGCATAAAATACGAAAC 59.226 45.455 0.00 0.00 0.00 2.78
934 935 3.103007 GCGGTGCATAAAATACGAAACC 58.897 45.455 0.00 0.00 0.00 3.27
935 936 3.181504 GCGGTGCATAAAATACGAAACCT 60.182 43.478 0.00 0.00 0.00 3.50
936 937 4.034279 GCGGTGCATAAAATACGAAACCTA 59.966 41.667 0.00 0.00 0.00 3.08
937 938 5.447548 GCGGTGCATAAAATACGAAACCTAA 60.448 40.000 0.00 0.00 0.00 2.69
938 939 6.189567 CGGTGCATAAAATACGAAACCTAAG 58.810 40.000 0.00 0.00 0.00 2.18
939 940 6.492254 GGTGCATAAAATACGAAACCTAAGG 58.508 40.000 0.00 0.00 0.00 2.69
940 941 6.316890 GGTGCATAAAATACGAAACCTAAGGA 59.683 38.462 0.00 0.00 0.00 3.36
941 942 7.184779 GTGCATAAAATACGAAACCTAAGGAC 58.815 38.462 0.00 0.00 0.00 3.85
942 943 7.065443 GTGCATAAAATACGAAACCTAAGGACT 59.935 37.037 0.00 0.00 0.00 3.85
943 944 7.279313 TGCATAAAATACGAAACCTAAGGACTC 59.721 37.037 0.00 0.00 0.00 3.36
944 945 7.516312 GCATAAAATACGAAACCTAAGGACTCG 60.516 40.741 0.00 0.00 36.77 4.18
945 946 5.649782 AAATACGAAACCTAAGGACTCGA 57.350 39.130 11.50 0.00 35.52 4.04
946 947 5.848833 AATACGAAACCTAAGGACTCGAT 57.151 39.130 11.50 0.87 35.52 3.59
947 948 3.779271 ACGAAACCTAAGGACTCGATC 57.221 47.619 11.50 0.00 35.52 3.69
948 949 2.097142 ACGAAACCTAAGGACTCGATCG 59.903 50.000 9.36 9.36 35.52 3.69
949 950 2.097142 CGAAACCTAAGGACTCGATCGT 59.903 50.000 15.94 0.00 34.25 3.73
950 951 3.310774 CGAAACCTAAGGACTCGATCGTA 59.689 47.826 15.94 0.90 34.25 3.43
951 952 4.024218 CGAAACCTAAGGACTCGATCGTAT 60.024 45.833 15.94 4.13 34.25 3.06
952 953 4.832590 AACCTAAGGACTCGATCGTATG 57.167 45.455 15.94 9.25 0.00 2.39
953 954 3.147629 ACCTAAGGACTCGATCGTATGG 58.852 50.000 15.94 9.45 0.00 2.74
954 955 3.181447 ACCTAAGGACTCGATCGTATGGA 60.181 47.826 15.94 0.00 0.00 3.41
955 956 4.011023 CCTAAGGACTCGATCGTATGGAT 58.989 47.826 15.94 1.94 38.35 3.41
956 957 5.183969 CCTAAGGACTCGATCGTATGGATA 58.816 45.833 15.94 3.02 34.82 2.59
957 958 5.823570 CCTAAGGACTCGATCGTATGGATAT 59.176 44.000 15.94 0.00 34.82 1.63
958 959 5.568685 AAGGACTCGATCGTATGGATATG 57.431 43.478 15.94 0.00 34.82 1.78
959 960 3.948473 AGGACTCGATCGTATGGATATGG 59.052 47.826 15.94 0.00 34.82 2.74
960 961 3.945921 GGACTCGATCGTATGGATATGGA 59.054 47.826 15.94 0.00 34.82 3.41
961 962 4.398358 GGACTCGATCGTATGGATATGGAA 59.602 45.833 15.94 0.00 34.82 3.53
962 963 5.105877 GGACTCGATCGTATGGATATGGAAA 60.106 44.000 15.94 0.00 34.82 3.13
963 964 6.340962 ACTCGATCGTATGGATATGGAAAA 57.659 37.500 15.94 0.00 34.82 2.29
964 965 6.936279 ACTCGATCGTATGGATATGGAAAAT 58.064 36.000 15.94 0.00 34.82 1.82
965 966 8.063200 ACTCGATCGTATGGATATGGAAAATA 57.937 34.615 15.94 0.00 34.82 1.40
966 967 7.974501 ACTCGATCGTATGGATATGGAAAATAC 59.025 37.037 15.94 0.00 34.82 1.89
967 968 7.832769 TCGATCGTATGGATATGGAAAATACA 58.167 34.615 15.94 0.00 34.82 2.29
968 969 7.973944 TCGATCGTATGGATATGGAAAATACAG 59.026 37.037 15.94 0.00 34.82 2.74
969 970 7.222805 CGATCGTATGGATATGGAAAATACAGG 59.777 40.741 7.03 0.00 34.82 4.00
970 971 7.547697 TCGTATGGATATGGAAAATACAGGA 57.452 36.000 0.00 0.00 0.00 3.86
971 972 8.146053 TCGTATGGATATGGAAAATACAGGAT 57.854 34.615 0.00 0.00 0.00 3.24
972 973 8.602424 TCGTATGGATATGGAAAATACAGGATT 58.398 33.333 0.00 0.00 0.00 3.01
973 974 9.231297 CGTATGGATATGGAAAATACAGGATTT 57.769 33.333 0.00 0.00 39.56 2.17
984 985 7.497925 AAAATACAGGATTTTCGATCCTAGC 57.502 36.000 5.75 0.00 46.22 3.42
985 986 3.099267 ACAGGATTTTCGATCCTAGCG 57.901 47.619 5.75 0.00 46.22 4.26
986 987 2.224066 ACAGGATTTTCGATCCTAGCGG 60.224 50.000 5.75 0.00 46.22 5.52
987 988 1.344763 AGGATTTTCGATCCTAGCGGG 59.655 52.381 4.18 0.00 46.11 6.13
988 989 3.020037 AGGATTTTCGATCCTAGCGGGA 61.020 50.000 4.18 4.05 46.11 5.14
996 997 2.604118 TCCTAGCGGGAAAAGGAGG 58.396 57.895 0.00 0.00 41.91 4.30
997 998 0.981277 TCCTAGCGGGAAAAGGAGGG 60.981 60.000 0.00 0.00 41.91 4.30
998 999 0.981277 CCTAGCGGGAAAAGGAGGGA 60.981 60.000 0.00 0.00 37.23 4.20
999 1000 0.909623 CTAGCGGGAAAAGGAGGGAA 59.090 55.000 0.00 0.00 0.00 3.97
1000 1001 1.280998 CTAGCGGGAAAAGGAGGGAAA 59.719 52.381 0.00 0.00 0.00 3.13
1001 1002 0.704664 AGCGGGAAAAGGAGGGAAAT 59.295 50.000 0.00 0.00 0.00 2.17
1002 1003 0.817654 GCGGGAAAAGGAGGGAAATG 59.182 55.000 0.00 0.00 0.00 2.32
1003 1004 1.474330 CGGGAAAAGGAGGGAAATGG 58.526 55.000 0.00 0.00 0.00 3.16
1004 1005 1.005450 CGGGAAAAGGAGGGAAATGGA 59.995 52.381 0.00 0.00 0.00 3.41
1005 1006 2.358195 CGGGAAAAGGAGGGAAATGGAT 60.358 50.000 0.00 0.00 0.00 3.41
1006 1007 3.117663 CGGGAAAAGGAGGGAAATGGATA 60.118 47.826 0.00 0.00 0.00 2.59
1007 1008 4.215908 GGGAAAAGGAGGGAAATGGATAC 58.784 47.826 0.00 0.00 0.00 2.24
1008 1009 4.079154 GGGAAAAGGAGGGAAATGGATACT 60.079 45.833 0.00 0.00 37.61 2.12
1009 1010 5.133941 GGAAAAGGAGGGAAATGGATACTC 58.866 45.833 0.00 0.00 37.61 2.59
1010 1011 5.340027 GGAAAAGGAGGGAAATGGATACTCA 60.340 44.000 0.00 0.00 37.61 3.41
1011 1012 5.796502 AAAGGAGGGAAATGGATACTCAA 57.203 39.130 0.00 0.00 37.61 3.02
1012 1013 6.347061 AAAGGAGGGAAATGGATACTCAAT 57.653 37.500 0.00 0.00 37.61 2.57
1013 1014 6.347061 AAGGAGGGAAATGGATACTCAATT 57.653 37.500 0.00 0.00 37.61 2.32
1014 1015 6.347061 AGGAGGGAAATGGATACTCAATTT 57.653 37.500 0.00 0.00 37.61 1.82
1015 1016 7.465900 AGGAGGGAAATGGATACTCAATTTA 57.534 36.000 0.00 0.00 37.61 1.40
1016 1017 7.882755 AGGAGGGAAATGGATACTCAATTTAA 58.117 34.615 0.00 0.00 37.61 1.52
1017 1018 8.343787 AGGAGGGAAATGGATACTCAATTTAAA 58.656 33.333 0.00 0.00 37.61 1.52
1018 1019 8.633561 GGAGGGAAATGGATACTCAATTTAAAG 58.366 37.037 0.00 0.00 37.61 1.85
1019 1020 9.190317 GAGGGAAATGGATACTCAATTTAAAGT 57.810 33.333 0.00 0.00 37.61 2.66
1020 1021 8.971073 AGGGAAATGGATACTCAATTTAAAGTG 58.029 33.333 9.33 9.33 37.61 3.16
1021 1022 8.966868 GGGAAATGGATACTCAATTTAAAGTGA 58.033 33.333 16.70 16.70 37.61 3.41
1041 1042 8.779354 AAGTGAGTAAACAGAATTCCATACTC 57.221 34.615 20.02 20.02 39.60 2.59
1042 1043 7.036220 AGTGAGTAAACAGAATTCCATACTCG 58.964 38.462 20.70 0.00 41.18 4.18
1043 1044 7.033791 GTGAGTAAACAGAATTCCATACTCGA 58.966 38.462 20.70 13.31 41.18 4.04
1044 1045 7.707035 GTGAGTAAACAGAATTCCATACTCGAT 59.293 37.037 20.70 0.00 41.18 3.59
1045 1046 7.921214 TGAGTAAACAGAATTCCATACTCGATC 59.079 37.037 20.70 6.78 41.18 3.69
1046 1047 8.012957 AGTAAACAGAATTCCATACTCGATCT 57.987 34.615 0.65 0.00 0.00 2.75
1047 1048 8.138712 AGTAAACAGAATTCCATACTCGATCTC 58.861 37.037 0.65 0.00 0.00 2.75
1048 1049 6.471233 AACAGAATTCCATACTCGATCTCA 57.529 37.500 0.65 0.00 0.00 3.27
1049 1050 6.662865 ACAGAATTCCATACTCGATCTCAT 57.337 37.500 0.65 0.00 0.00 2.90
1050 1051 7.767250 ACAGAATTCCATACTCGATCTCATA 57.233 36.000 0.65 0.00 0.00 2.15
1051 1052 7.825681 ACAGAATTCCATACTCGATCTCATAG 58.174 38.462 0.65 0.00 0.00 2.23
1052 1053 7.667635 ACAGAATTCCATACTCGATCTCATAGA 59.332 37.037 0.65 0.00 0.00 1.98
1053 1054 8.685427 CAGAATTCCATACTCGATCTCATAGAT 58.315 37.037 0.65 0.00 37.73 1.98
1054 1055 8.902806 AGAATTCCATACTCGATCTCATAGATC 58.097 37.037 0.65 6.82 45.84 2.75
1055 1056 7.581213 ATTCCATACTCGATCTCATAGATCC 57.419 40.000 10.52 0.00 46.42 3.36
1056 1057 5.441500 TCCATACTCGATCTCATAGATCCC 58.558 45.833 10.52 0.00 46.42 3.85
1057 1058 5.192722 TCCATACTCGATCTCATAGATCCCT 59.807 44.000 10.52 0.00 46.42 4.20
1058 1059 6.387220 TCCATACTCGATCTCATAGATCCCTA 59.613 42.308 10.52 0.27 46.42 3.53
1059 1060 7.073088 TCCATACTCGATCTCATAGATCCCTAT 59.927 40.741 10.52 2.19 46.42 2.57
1060 1061 8.379331 CCATACTCGATCTCATAGATCCCTATA 58.621 40.741 10.52 1.12 46.42 1.31
1061 1062 9.435688 CATACTCGATCTCATAGATCCCTATAG 57.564 40.741 10.52 0.00 46.42 1.31
1062 1063 7.684317 ACTCGATCTCATAGATCCCTATAGA 57.316 40.000 10.52 1.94 46.42 1.98
1063 1064 8.096621 ACTCGATCTCATAGATCCCTATAGAA 57.903 38.462 10.52 0.00 46.42 2.10
1064 1065 8.723365 ACTCGATCTCATAGATCCCTATAGAAT 58.277 37.037 10.52 0.00 46.42 2.40
1065 1066 9.573166 CTCGATCTCATAGATCCCTATAGAATT 57.427 37.037 10.52 0.00 46.42 2.17
1066 1067 9.567776 TCGATCTCATAGATCCCTATAGAATTC 57.432 37.037 10.52 0.00 46.42 2.17
1067 1068 9.573166 CGATCTCATAGATCCCTATAGAATTCT 57.427 37.037 13.56 13.56 46.42 2.40
1070 1071 9.473007 TCTCATAGATCCCTATAGAATTCTGTG 57.527 37.037 18.47 7.58 33.98 3.66
1071 1072 8.601047 TCATAGATCCCTATAGAATTCTGTGG 57.399 38.462 18.47 13.08 33.98 4.17
1072 1073 8.401894 TCATAGATCCCTATAGAATTCTGTGGA 58.598 37.037 18.47 14.73 33.98 4.02
1073 1074 9.040259 CATAGATCCCTATAGAATTCTGTGGAA 57.960 37.037 18.47 5.77 33.98 3.53
1074 1075 7.937700 AGATCCCTATAGAATTCTGTGGAAA 57.062 36.000 18.47 5.43 34.90 3.13
1075 1076 7.972301 AGATCCCTATAGAATTCTGTGGAAAG 58.028 38.462 18.47 5.57 34.90 2.62
1076 1077 5.930135 TCCCTATAGAATTCTGTGGAAAGC 58.070 41.667 18.47 0.00 34.90 3.51
1077 1078 5.066593 CCCTATAGAATTCTGTGGAAAGCC 58.933 45.833 18.47 0.00 34.90 4.35
1078 1079 4.752101 CCTATAGAATTCTGTGGAAAGCCG 59.248 45.833 18.47 0.00 36.79 5.52
1079 1080 2.568623 AGAATTCTGTGGAAAGCCGT 57.431 45.000 7.30 0.00 36.79 5.68
1080 1081 3.695830 AGAATTCTGTGGAAAGCCGTA 57.304 42.857 7.30 0.00 36.79 4.02
1081 1082 4.222124 AGAATTCTGTGGAAAGCCGTAT 57.778 40.909 7.30 0.00 36.79 3.06
1082 1083 4.589908 AGAATTCTGTGGAAAGCCGTATT 58.410 39.130 7.30 0.00 36.79 1.89
1083 1084 4.636206 AGAATTCTGTGGAAAGCCGTATTC 59.364 41.667 7.30 0.00 36.79 1.75
1084 1085 2.004583 TCTGTGGAAAGCCGTATTCG 57.995 50.000 0.00 0.00 36.79 3.34
1085 1086 1.546923 TCTGTGGAAAGCCGTATTCGA 59.453 47.619 0.00 0.00 39.71 3.71
1086 1087 2.167693 TCTGTGGAAAGCCGTATTCGAT 59.832 45.455 0.00 0.00 39.71 3.59
1087 1088 2.276201 TGTGGAAAGCCGTATTCGATG 58.724 47.619 0.00 0.00 39.71 3.84
1088 1089 2.093921 TGTGGAAAGCCGTATTCGATGA 60.094 45.455 0.00 0.00 39.71 2.92
1089 1090 2.933906 GTGGAAAGCCGTATTCGATGAA 59.066 45.455 0.00 0.00 39.71 2.57
1090 1091 3.372822 GTGGAAAGCCGTATTCGATGAAA 59.627 43.478 0.00 0.00 39.71 2.69
1091 1092 3.621268 TGGAAAGCCGTATTCGATGAAAG 59.379 43.478 0.00 0.00 39.71 2.62
1092 1093 3.621715 GGAAAGCCGTATTCGATGAAAGT 59.378 43.478 0.00 0.00 39.71 2.66
1093 1094 4.260253 GGAAAGCCGTATTCGATGAAAGTC 60.260 45.833 0.00 0.00 39.71 3.01
1094 1095 2.460918 AGCCGTATTCGATGAAAGTCG 58.539 47.619 0.00 0.00 42.74 4.18
1095 1096 2.159282 AGCCGTATTCGATGAAAGTCGT 60.159 45.455 0.00 0.00 42.07 4.34
1096 1097 3.065786 AGCCGTATTCGATGAAAGTCGTA 59.934 43.478 0.00 0.00 42.07 3.43
1097 1098 3.979495 GCCGTATTCGATGAAAGTCGTAT 59.021 43.478 0.00 0.00 42.07 3.06
1098 1099 4.143597 GCCGTATTCGATGAAAGTCGTATG 60.144 45.833 0.00 0.00 42.07 2.39
1099 1100 4.974275 CCGTATTCGATGAAAGTCGTATGT 59.026 41.667 0.00 0.00 42.07 2.29
1100 1101 6.138088 CCGTATTCGATGAAAGTCGTATGTA 58.862 40.000 0.00 0.00 42.07 2.29
1101 1102 6.085979 CCGTATTCGATGAAAGTCGTATGTAC 59.914 42.308 0.00 0.00 42.07 2.90
1102 1103 6.183359 CGTATTCGATGAAAGTCGTATGTACG 60.183 42.308 6.24 6.24 44.22 3.67
1103 1104 8.953641 CGTATTCGATGAAAGTCGTATGTACGG 61.954 44.444 12.11 0.00 43.60 4.02
1111 1112 3.267900 CGTATGTACGGCTTGGAGG 57.732 57.895 4.72 0.00 45.30 4.30
1112 1113 0.249322 CGTATGTACGGCTTGGAGGG 60.249 60.000 4.72 0.00 45.30 4.30
1113 1114 1.117150 GTATGTACGGCTTGGAGGGA 58.883 55.000 0.00 0.00 0.00 4.20
1114 1115 1.068741 GTATGTACGGCTTGGAGGGAG 59.931 57.143 0.00 0.00 0.00 4.30
1115 1116 0.325296 ATGTACGGCTTGGAGGGAGA 60.325 55.000 0.00 0.00 0.00 3.71
1116 1117 0.325296 TGTACGGCTTGGAGGGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
1117 1118 0.389757 GTACGGCTTGGAGGGAGATC 59.610 60.000 0.00 0.00 0.00 2.75
1118 1119 0.261991 TACGGCTTGGAGGGAGATCT 59.738 55.000 0.00 0.00 0.00 2.75
1119 1120 0.618968 ACGGCTTGGAGGGAGATCTT 60.619 55.000 0.00 0.00 0.00 2.40
1120 1121 0.543749 CGGCTTGGAGGGAGATCTTT 59.456 55.000 0.00 0.00 0.00 2.52
1121 1122 1.474143 CGGCTTGGAGGGAGATCTTTC 60.474 57.143 0.00 0.00 0.00 2.62
1122 1123 1.133945 GGCTTGGAGGGAGATCTTTCC 60.134 57.143 12.52 12.52 36.46 3.13
1123 1124 1.843206 GCTTGGAGGGAGATCTTTCCT 59.157 52.381 15.75 15.75 37.40 3.36
1124 1125 3.041946 GCTTGGAGGGAGATCTTTCCTA 58.958 50.000 15.78 10.61 37.40 2.94
1125 1126 3.650461 GCTTGGAGGGAGATCTTTCCTAT 59.350 47.826 15.78 0.13 37.40 2.57
1126 1127 4.262851 GCTTGGAGGGAGATCTTTCCTATC 60.263 50.000 15.78 12.34 37.40 2.08
1127 1128 4.841813 TGGAGGGAGATCTTTCCTATCT 57.158 45.455 15.78 0.00 37.40 1.98
1128 1129 5.163259 TGGAGGGAGATCTTTCCTATCTT 57.837 43.478 15.78 0.00 37.40 2.40
1129 1130 5.542743 TGGAGGGAGATCTTTCCTATCTTT 58.457 41.667 15.78 0.00 37.40 2.52
1130 1131 5.604650 TGGAGGGAGATCTTTCCTATCTTTC 59.395 44.000 15.78 5.71 37.40 2.62
1131 1132 5.279256 GGAGGGAGATCTTTCCTATCTTTCG 60.279 48.000 15.78 0.00 37.40 3.46
1132 1133 5.459505 AGGGAGATCTTTCCTATCTTTCGA 58.540 41.667 14.63 0.00 37.40 3.71
1133 1134 5.538433 AGGGAGATCTTTCCTATCTTTCGAG 59.462 44.000 14.63 0.00 37.40 4.04
1134 1135 5.536916 GGGAGATCTTTCCTATCTTTCGAGA 59.463 44.000 0.00 0.00 37.40 4.04
1135 1136 6.210584 GGGAGATCTTTCCTATCTTTCGAGAT 59.789 42.308 0.00 0.00 37.40 2.75
1136 1137 7.312899 GGAGATCTTTCCTATCTTTCGAGATC 58.687 42.308 0.00 0.00 38.70 2.75
1137 1138 7.227049 AGATCTTTCCTATCTTTCGAGATCC 57.773 40.000 0.00 0.00 39.03 3.36
1138 1139 6.780031 AGATCTTTCCTATCTTTCGAGATCCA 59.220 38.462 0.00 0.00 39.03 3.41
1139 1140 6.150396 TCTTTCCTATCTTTCGAGATCCAC 57.850 41.667 0.00 0.00 0.00 4.02
1140 1141 4.939052 TTCCTATCTTTCGAGATCCACC 57.061 45.455 0.00 0.00 0.00 4.61
1141 1142 3.231818 TCCTATCTTTCGAGATCCACCC 58.768 50.000 0.00 0.00 0.00 4.61
1142 1143 3.117093 TCCTATCTTTCGAGATCCACCCT 60.117 47.826 0.00 0.00 0.00 4.34
1143 1144 4.105858 TCCTATCTTTCGAGATCCACCCTA 59.894 45.833 0.00 0.00 0.00 3.53
1144 1145 4.218852 CCTATCTTTCGAGATCCACCCTAC 59.781 50.000 0.00 0.00 0.00 3.18
1145 1146 3.095912 TCTTTCGAGATCCACCCTACA 57.904 47.619 0.00 0.00 0.00 2.74
1146 1147 3.437213 TCTTTCGAGATCCACCCTACAA 58.563 45.455 0.00 0.00 0.00 2.41
1147 1148 4.030913 TCTTTCGAGATCCACCCTACAAT 58.969 43.478 0.00 0.00 0.00 2.71
1148 1149 5.205821 TCTTTCGAGATCCACCCTACAATA 58.794 41.667 0.00 0.00 0.00 1.90
1149 1150 5.839063 TCTTTCGAGATCCACCCTACAATAT 59.161 40.000 0.00 0.00 0.00 1.28
1150 1151 5.468540 TTCGAGATCCACCCTACAATATG 57.531 43.478 0.00 0.00 0.00 1.78
1151 1152 3.832490 TCGAGATCCACCCTACAATATGG 59.168 47.826 0.00 0.00 0.00 2.74
1161 1162 5.852282 CCCTACAATATGGGGTCAAAAAG 57.148 43.478 0.00 0.00 44.42 2.27
1162 1163 4.099419 CCCTACAATATGGGGTCAAAAAGC 59.901 45.833 0.00 0.00 44.42 3.51
1163 1164 4.099419 CCTACAATATGGGGTCAAAAAGCC 59.901 45.833 0.00 0.00 45.37 4.35
1208 1209 9.271921 AGCCCTTATAAAAAGAAAATGGATTCT 57.728 29.630 0.00 0.00 41.34 2.40
1216 1217 8.893219 AAAAAGAAAATGGATTCTTGAACCTC 57.107 30.769 3.30 0.00 46.25 3.85
1217 1218 7.846101 AAAGAAAATGGATTCTTGAACCTCT 57.154 32.000 3.30 0.00 46.25 3.69
1218 1219 7.846101 AAGAAAATGGATTCTTGAACCTCTT 57.154 32.000 1.76 0.00 45.47 2.85
1219 1220 7.846101 AGAAAATGGATTCTTGAACCTCTTT 57.154 32.000 0.00 0.00 36.23 2.52
1220 1221 7.890515 AGAAAATGGATTCTTGAACCTCTTTC 58.109 34.615 0.00 0.00 36.23 2.62
1221 1222 7.506938 AGAAAATGGATTCTTGAACCTCTTTCA 59.493 33.333 0.00 0.00 42.83 2.69
1222 1223 6.581171 AATGGATTCTTGAACCTCTTTCAC 57.419 37.500 0.00 0.00 44.28 3.18
1223 1224 4.065088 TGGATTCTTGAACCTCTTTCACG 58.935 43.478 0.00 0.00 44.28 4.35
1224 1225 3.120165 GGATTCTTGAACCTCTTTCACGC 60.120 47.826 0.00 0.00 44.28 5.34
1225 1226 2.910688 TCTTGAACCTCTTTCACGCT 57.089 45.000 0.00 0.00 44.28 5.07
1226 1227 2.755650 TCTTGAACCTCTTTCACGCTC 58.244 47.619 0.00 0.00 44.28 5.03
1227 1228 2.102420 TCTTGAACCTCTTTCACGCTCA 59.898 45.455 0.00 0.00 44.28 4.26
1228 1229 2.839486 TGAACCTCTTTCACGCTCAT 57.161 45.000 0.00 0.00 39.45 2.90
1229 1230 2.416747 TGAACCTCTTTCACGCTCATG 58.583 47.619 0.00 0.00 39.45 3.07
1230 1231 2.224281 TGAACCTCTTTCACGCTCATGT 60.224 45.455 0.00 0.00 39.45 3.21
1231 1232 2.086054 ACCTCTTTCACGCTCATGTC 57.914 50.000 0.00 0.00 0.00 3.06
1232 1233 1.344438 ACCTCTTTCACGCTCATGTCA 59.656 47.619 0.00 0.00 0.00 3.58
1233 1234 1.728971 CCTCTTTCACGCTCATGTCAC 59.271 52.381 0.00 0.00 0.00 3.67
1234 1235 1.388093 CTCTTTCACGCTCATGTCACG 59.612 52.381 0.00 0.00 0.00 4.35
1235 1236 1.139989 CTTTCACGCTCATGTCACGT 58.860 50.000 4.93 4.93 41.45 4.49
1236 1237 1.125021 CTTTCACGCTCATGTCACGTC 59.875 52.381 7.30 0.00 38.09 4.34
1237 1238 1.001745 TTCACGCTCATGTCACGTCG 61.002 55.000 7.30 0.00 38.09 5.12
1238 1239 1.442017 CACGCTCATGTCACGTCGA 60.442 57.895 0.00 0.00 38.09 4.20
1239 1240 1.154207 ACGCTCATGTCACGTCGAG 60.154 57.895 0.00 0.00 34.35 4.04
1240 1241 1.869574 CGCTCATGTCACGTCGAGG 60.870 63.158 3.03 3.03 0.00 4.63
1241 1242 1.213013 GCTCATGTCACGTCGAGGT 59.787 57.895 4.63 4.63 0.00 3.85
1242 1243 0.450583 GCTCATGTCACGTCGAGGTA 59.549 55.000 10.91 0.00 0.00 3.08
1243 1244 1.794437 GCTCATGTCACGTCGAGGTAC 60.794 57.143 10.91 10.00 0.00 3.34
1245 1246 1.467342 TCATGTCACGTCGAGGTACTG 59.533 52.381 10.91 6.36 41.55 2.74
1246 1247 0.170561 ATGTCACGTCGAGGTACTGC 59.829 55.000 10.91 2.50 41.55 4.40
1247 1248 1.167781 TGTCACGTCGAGGTACTGCA 61.168 55.000 10.91 4.99 41.55 4.41
1248 1249 0.454620 GTCACGTCGAGGTACTGCAG 60.455 60.000 13.48 13.48 41.55 4.41
1249 1250 0.604511 TCACGTCGAGGTACTGCAGA 60.605 55.000 23.35 0.48 41.55 4.26
1250 1251 0.240145 CACGTCGAGGTACTGCAGAA 59.760 55.000 23.35 0.00 41.55 3.02
1251 1252 0.956633 ACGTCGAGGTACTGCAGAAA 59.043 50.000 23.35 4.90 41.55 2.52
1252 1253 1.338973 ACGTCGAGGTACTGCAGAAAA 59.661 47.619 23.35 1.97 41.55 2.29
1253 1254 2.223876 ACGTCGAGGTACTGCAGAAAAA 60.224 45.455 23.35 0.00 41.55 1.94
1273 1274 4.440839 AAAGAACTGCAAAATCCGATCC 57.559 40.909 0.00 0.00 0.00 3.36
1274 1275 3.071874 AGAACTGCAAAATCCGATCCA 57.928 42.857 0.00 0.00 0.00 3.41
1275 1276 3.420893 AGAACTGCAAAATCCGATCCAA 58.579 40.909 0.00 0.00 0.00 3.53
1276 1277 4.019174 AGAACTGCAAAATCCGATCCAAT 58.981 39.130 0.00 0.00 0.00 3.16
1277 1278 4.463891 AGAACTGCAAAATCCGATCCAATT 59.536 37.500 0.00 0.00 0.00 2.32
1278 1279 4.806640 ACTGCAAAATCCGATCCAATTT 57.193 36.364 0.00 0.00 0.00 1.82
1279 1280 5.151297 ACTGCAAAATCCGATCCAATTTT 57.849 34.783 6.80 6.80 35.91 1.82
1280 1281 5.550290 ACTGCAAAATCCGATCCAATTTTT 58.450 33.333 9.04 0.00 33.86 1.94
1281 1282 5.639082 ACTGCAAAATCCGATCCAATTTTTC 59.361 36.000 9.04 6.48 33.86 2.29
1282 1283 4.624882 TGCAAAATCCGATCCAATTTTTCG 59.375 37.500 9.04 3.18 33.86 3.46
1283 1284 4.625311 GCAAAATCCGATCCAATTTTTCGT 59.375 37.500 9.04 0.00 33.86 3.85
1284 1285 5.802956 GCAAAATCCGATCCAATTTTTCGTA 59.197 36.000 9.04 0.00 33.86 3.43
1285 1286 6.309251 GCAAAATCCGATCCAATTTTTCGTAA 59.691 34.615 9.04 0.00 33.86 3.18
1286 1287 7.010091 GCAAAATCCGATCCAATTTTTCGTAAT 59.990 33.333 9.04 0.00 33.86 1.89
1287 1288 8.531530 CAAAATCCGATCCAATTTTTCGTAATC 58.468 33.333 9.04 0.00 33.86 1.75
1288 1289 5.398176 TCCGATCCAATTTTTCGTAATCG 57.602 39.130 0.00 0.00 35.53 3.34
1289 1290 5.110598 TCCGATCCAATTTTTCGTAATCGA 58.889 37.500 0.00 0.00 44.66 3.59
1290 1291 5.756347 TCCGATCCAATTTTTCGTAATCGAT 59.244 36.000 0.00 0.00 45.65 3.59
1291 1292 6.259167 TCCGATCCAATTTTTCGTAATCGATT 59.741 34.615 16.15 16.15 45.65 3.34
1292 1293 7.438757 TCCGATCCAATTTTTCGTAATCGATTA 59.561 33.333 13.85 13.85 45.65 1.75
1293 1294 7.740346 CCGATCCAATTTTTCGTAATCGATTAG 59.260 37.037 18.03 12.01 45.65 1.73
1294 1295 8.273557 CGATCCAATTTTTCGTAATCGATTAGT 58.726 33.333 18.03 0.00 45.65 2.24
1295 1296 9.931210 GATCCAATTTTTCGTAATCGATTAGTT 57.069 29.630 18.03 0.00 45.65 2.24
1302 1303 9.976255 TTTTTCGTAATCGATTAGTTAACATGG 57.024 29.630 18.03 0.00 45.65 3.66
1303 1304 8.706492 TTTCGTAATCGATTAGTTAACATGGT 57.294 30.769 18.03 0.00 45.65 3.55
1304 1305 7.688478 TCGTAATCGATTAGTTAACATGGTG 57.312 36.000 18.03 0.00 41.35 4.17
1305 1306 6.698329 TCGTAATCGATTAGTTAACATGGTGG 59.302 38.462 18.03 0.00 41.35 4.61
1306 1307 6.477688 CGTAATCGATTAGTTAACATGGTGGT 59.522 38.462 18.03 0.00 39.71 4.16
1307 1308 7.010738 CGTAATCGATTAGTTAACATGGTGGTT 59.989 37.037 18.03 0.10 39.71 3.67
1308 1309 9.316730 GTAATCGATTAGTTAACATGGTGGTTA 57.683 33.333 18.03 0.00 32.29 2.85
1309 1310 8.795842 AATCGATTAGTTAACATGGTGGTTAA 57.204 30.769 9.39 0.00 40.04 2.01
1325 1326 7.008440 GGTGGTTAACCGTATTATGAAAGAC 57.992 40.000 19.65 7.19 39.81 3.01
1326 1327 6.237915 GGTGGTTAACCGTATTATGAAAGACG 60.238 42.308 19.65 0.00 47.00 4.18
1360 1361 8.315391 TCATTGGCTTATCAAATTCTCTATCG 57.685 34.615 0.00 0.00 0.00 2.92
1361 1362 8.150296 TCATTGGCTTATCAAATTCTCTATCGA 58.850 33.333 0.00 0.00 0.00 3.59
1362 1363 7.953158 TTGGCTTATCAAATTCTCTATCGAG 57.047 36.000 0.00 0.00 38.67 4.04
1363 1364 5.928839 TGGCTTATCAAATTCTCTATCGAGC 59.071 40.000 0.00 0.00 37.19 5.03
1364 1365 5.350091 GGCTTATCAAATTCTCTATCGAGCC 59.650 44.000 0.00 0.00 38.11 4.70
1365 1366 5.061560 GCTTATCAAATTCTCTATCGAGCCG 59.938 44.000 0.00 0.00 37.19 5.52
1366 1367 4.592485 ATCAAATTCTCTATCGAGCCGT 57.408 40.909 0.00 0.00 37.19 5.68
1367 1368 3.706698 TCAAATTCTCTATCGAGCCGTG 58.293 45.455 0.00 0.00 37.19 4.94
1368 1369 3.380320 TCAAATTCTCTATCGAGCCGTGA 59.620 43.478 0.00 0.00 37.19 4.35
1369 1370 4.112634 CAAATTCTCTATCGAGCCGTGAA 58.887 43.478 0.00 0.00 37.19 3.18
1370 1371 4.386867 AATTCTCTATCGAGCCGTGAAA 57.613 40.909 0.00 0.00 37.19 2.69
1371 1372 3.861276 TTCTCTATCGAGCCGTGAAAA 57.139 42.857 0.00 0.00 37.19 2.29
1372 1373 3.861276 TCTCTATCGAGCCGTGAAAAA 57.139 42.857 0.00 0.00 37.19 1.94
1373 1374 3.770666 TCTCTATCGAGCCGTGAAAAAG 58.229 45.455 0.00 0.00 37.19 2.27
1374 1375 3.442625 TCTCTATCGAGCCGTGAAAAAGA 59.557 43.478 0.00 0.00 37.19 2.52
1375 1376 4.098044 TCTCTATCGAGCCGTGAAAAAGAT 59.902 41.667 0.00 0.00 37.19 2.40
1376 1377 4.755411 TCTATCGAGCCGTGAAAAAGATT 58.245 39.130 0.00 0.00 0.00 2.40
1377 1378 4.804139 TCTATCGAGCCGTGAAAAAGATTC 59.196 41.667 0.00 0.00 0.00 2.52
1378 1379 2.761559 TCGAGCCGTGAAAAAGATTCA 58.238 42.857 0.00 0.00 0.00 2.57
1379 1380 3.135225 TCGAGCCGTGAAAAAGATTCAA 58.865 40.909 0.00 0.00 0.00 2.69
1380 1381 3.059188 TCGAGCCGTGAAAAAGATTCAAC 60.059 43.478 0.00 0.00 0.00 3.18
1381 1382 3.303725 CGAGCCGTGAAAAAGATTCAACA 60.304 43.478 0.00 0.00 0.00 3.33
1510 1516 5.476945 TCCAGCCTTCAATAAGAAAAACTCC 59.523 40.000 0.00 0.00 35.40 3.85
1631 1640 9.762933 TTATGGAAGAAAAACAAATGGAAGAAG 57.237 29.630 0.00 0.00 0.00 2.85
1687 1696 1.343142 GATTTTTGGTTTGGGCCGAGT 59.657 47.619 0.00 0.00 0.00 4.18
2100 2625 4.213270 CCGTGCTTCATTTAGTGTTCAGAA 59.787 41.667 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 2.031944 GCTGGAACGGTTTTCTCTTCAC 60.032 50.000 0.00 0.00 36.83 3.18
342 343 7.432059 AGCTACTATTTATACCGGAACAAGAC 58.568 38.462 9.46 0.00 0.00 3.01
433 434 3.863142 AGTCAGAATCAATTGGCAAGC 57.137 42.857 5.96 0.00 0.00 4.01
918 919 7.516312 CGAGTCCTTAGGTTTCGTATTTTATGC 60.516 40.741 15.17 0.00 0.00 3.14
929 930 3.779271 ACGATCGAGTCCTTAGGTTTC 57.221 47.619 24.34 0.00 0.00 2.78
930 931 4.037684 CCATACGATCGAGTCCTTAGGTTT 59.962 45.833 24.34 0.00 0.00 3.27
931 932 3.568853 CCATACGATCGAGTCCTTAGGTT 59.431 47.826 24.34 0.00 0.00 3.50
932 933 3.147629 CCATACGATCGAGTCCTTAGGT 58.852 50.000 24.34 0.00 0.00 3.08
933 934 3.409570 TCCATACGATCGAGTCCTTAGG 58.590 50.000 24.34 11.23 0.00 2.69
934 935 6.238511 CCATATCCATACGATCGAGTCCTTAG 60.239 46.154 24.34 4.36 31.92 2.18
935 936 5.589050 CCATATCCATACGATCGAGTCCTTA 59.411 44.000 24.34 2.31 31.92 2.69
936 937 4.399618 CCATATCCATACGATCGAGTCCTT 59.600 45.833 24.34 0.00 31.92 3.36
937 938 3.948473 CCATATCCATACGATCGAGTCCT 59.052 47.826 24.34 0.39 31.92 3.85
938 939 3.945921 TCCATATCCATACGATCGAGTCC 59.054 47.826 24.34 0.00 31.92 3.85
939 940 5.562506 TTCCATATCCATACGATCGAGTC 57.437 43.478 24.34 0.00 31.92 3.36
940 941 5.977489 TTTCCATATCCATACGATCGAGT 57.023 39.130 24.34 6.65 31.92 4.18
941 942 7.973944 TGTATTTTCCATATCCATACGATCGAG 59.026 37.037 24.34 10.89 31.92 4.04
942 943 7.832769 TGTATTTTCCATATCCATACGATCGA 58.167 34.615 24.34 5.87 31.92 3.59
943 944 7.222805 CCTGTATTTTCCATATCCATACGATCG 59.777 40.741 14.88 14.88 31.92 3.69
944 945 8.258007 TCCTGTATTTTCCATATCCATACGATC 58.742 37.037 0.00 0.00 31.92 3.69
945 946 8.146053 TCCTGTATTTTCCATATCCATACGAT 57.854 34.615 0.00 0.00 34.73 3.73
946 947 7.547697 TCCTGTATTTTCCATATCCATACGA 57.452 36.000 0.00 0.00 0.00 3.43
947 948 8.792830 AATCCTGTATTTTCCATATCCATACG 57.207 34.615 0.00 0.00 0.00 3.06
966 967 6.539551 TTCCCGCTAGGATCGAAAATCCTG 62.540 50.000 15.01 7.28 46.94 3.86
967 968 4.512490 TTCCCGCTAGGATCGAAAATCCT 61.512 47.826 10.77 10.77 46.94 3.24
968 969 1.343465 TCCCGCTAGGATCGAAAATCC 59.657 52.381 0.00 0.00 40.93 3.01
969 970 2.814280 TCCCGCTAGGATCGAAAATC 57.186 50.000 0.00 0.00 40.93 2.17
970 971 3.553828 TTTCCCGCTAGGATCGAAAAT 57.446 42.857 0.00 0.00 46.94 1.82
971 972 3.267483 CTTTTCCCGCTAGGATCGAAAA 58.733 45.455 0.00 0.00 46.94 2.29
972 973 2.419574 CCTTTTCCCGCTAGGATCGAAA 60.420 50.000 0.00 0.00 46.94 3.46
973 974 1.138266 CCTTTTCCCGCTAGGATCGAA 59.862 52.381 0.00 0.00 46.94 3.71
974 975 0.750850 CCTTTTCCCGCTAGGATCGA 59.249 55.000 0.00 0.00 46.94 3.59
975 976 0.750850 TCCTTTTCCCGCTAGGATCG 59.249 55.000 0.00 0.00 46.94 3.69
976 977 1.070914 CCTCCTTTTCCCGCTAGGATC 59.929 57.143 0.00 0.00 46.94 3.36
977 978 1.132500 CCTCCTTTTCCCGCTAGGAT 58.868 55.000 0.00 0.00 46.94 3.24
978 979 0.981277 CCCTCCTTTTCCCGCTAGGA 60.981 60.000 0.00 0.00 45.68 2.94
979 980 0.981277 TCCCTCCTTTTCCCGCTAGG 60.981 60.000 0.00 0.00 37.24 3.02
980 981 0.909623 TTCCCTCCTTTTCCCGCTAG 59.090 55.000 0.00 0.00 0.00 3.42
981 982 1.364269 TTTCCCTCCTTTTCCCGCTA 58.636 50.000 0.00 0.00 0.00 4.26
982 983 0.704664 ATTTCCCTCCTTTTCCCGCT 59.295 50.000 0.00 0.00 0.00 5.52
983 984 0.817654 CATTTCCCTCCTTTTCCCGC 59.182 55.000 0.00 0.00 0.00 6.13
984 985 1.005450 TCCATTTCCCTCCTTTTCCCG 59.995 52.381 0.00 0.00 0.00 5.14
985 986 2.919772 TCCATTTCCCTCCTTTTCCC 57.080 50.000 0.00 0.00 0.00 3.97
986 987 5.130705 AGTATCCATTTCCCTCCTTTTCC 57.869 43.478 0.00 0.00 0.00 3.13
987 988 5.755849 TGAGTATCCATTTCCCTCCTTTTC 58.244 41.667 0.00 0.00 0.00 2.29
988 989 5.796502 TGAGTATCCATTTCCCTCCTTTT 57.203 39.130 0.00 0.00 0.00 2.27
989 990 5.796502 TTGAGTATCCATTTCCCTCCTTT 57.203 39.130 0.00 0.00 0.00 3.11
990 991 6.347061 AATTGAGTATCCATTTCCCTCCTT 57.653 37.500 0.00 0.00 23.37 3.36
991 992 6.347061 AAATTGAGTATCCATTTCCCTCCT 57.653 37.500 0.00 0.00 35.81 3.69
992 993 8.533569 TTTAAATTGAGTATCCATTTCCCTCC 57.466 34.615 0.00 0.00 39.39 4.30
993 994 9.190317 ACTTTAAATTGAGTATCCATTTCCCTC 57.810 33.333 0.00 0.00 39.39 4.30
994 995 8.971073 CACTTTAAATTGAGTATCCATTTCCCT 58.029 33.333 0.00 0.00 39.39 4.20
995 996 8.966868 TCACTTTAAATTGAGTATCCATTTCCC 58.033 33.333 4.26 0.00 39.39 3.97
1015 1016 9.220767 GAGTATGGAATTCTGTTTACTCACTTT 57.779 33.333 20.32 1.78 36.92 2.66
1016 1017 7.545965 CGAGTATGGAATTCTGTTTACTCACTT 59.454 37.037 22.46 3.38 36.80 3.16
1017 1018 7.036220 CGAGTATGGAATTCTGTTTACTCACT 58.964 38.462 22.46 9.97 36.80 3.41
1018 1019 7.033791 TCGAGTATGGAATTCTGTTTACTCAC 58.966 38.462 22.46 9.71 36.80 3.51
1019 1020 7.165460 TCGAGTATGGAATTCTGTTTACTCA 57.835 36.000 22.46 14.29 36.80 3.41
1020 1021 8.138712 AGATCGAGTATGGAATTCTGTTTACTC 58.861 37.037 17.82 17.82 34.75 2.59
1021 1022 8.012957 AGATCGAGTATGGAATTCTGTTTACT 57.987 34.615 5.23 7.46 0.00 2.24
1022 1023 7.921214 TGAGATCGAGTATGGAATTCTGTTTAC 59.079 37.037 5.23 3.08 0.00 2.01
1023 1024 8.007405 TGAGATCGAGTATGGAATTCTGTTTA 57.993 34.615 5.23 0.00 0.00 2.01
1024 1025 6.878317 TGAGATCGAGTATGGAATTCTGTTT 58.122 36.000 5.23 0.00 0.00 2.83
1025 1026 6.471233 TGAGATCGAGTATGGAATTCTGTT 57.529 37.500 5.23 0.00 0.00 3.16
1026 1027 6.662865 ATGAGATCGAGTATGGAATTCTGT 57.337 37.500 5.23 0.00 0.00 3.41
1027 1028 8.049655 TCTATGAGATCGAGTATGGAATTCTG 57.950 38.462 5.23 0.00 0.00 3.02
1028 1029 8.821686 ATCTATGAGATCGAGTATGGAATTCT 57.178 34.615 5.23 0.00 25.75 2.40
1044 1045 9.473007 CACAGAATTCTATAGGGATCTATGAGA 57.527 37.037 7.86 0.00 36.87 3.27
1045 1046 8.694540 CCACAGAATTCTATAGGGATCTATGAG 58.305 40.741 7.86 0.00 36.87 2.90
1046 1047 8.401894 TCCACAGAATTCTATAGGGATCTATGA 58.598 37.037 7.86 0.00 36.87 2.15
1047 1048 8.601047 TCCACAGAATTCTATAGGGATCTATG 57.399 38.462 7.86 1.16 36.87 2.23
1048 1049 9.621239 TTTCCACAGAATTCTATAGGGATCTAT 57.379 33.333 7.86 0.00 39.38 1.98
1049 1050 9.094578 CTTTCCACAGAATTCTATAGGGATCTA 57.905 37.037 7.86 0.00 0.00 1.98
1050 1051 7.474079 GCTTTCCACAGAATTCTATAGGGATCT 60.474 40.741 7.86 0.00 0.00 2.75
1051 1052 6.652900 GCTTTCCACAGAATTCTATAGGGATC 59.347 42.308 7.86 2.75 0.00 3.36
1052 1053 6.466470 GGCTTTCCACAGAATTCTATAGGGAT 60.466 42.308 7.86 0.00 0.00 3.85
1053 1054 5.163195 GGCTTTCCACAGAATTCTATAGGGA 60.163 44.000 7.86 9.68 0.00 4.20
1054 1055 5.066593 GGCTTTCCACAGAATTCTATAGGG 58.933 45.833 7.86 7.50 0.00 3.53
1055 1056 4.752101 CGGCTTTCCACAGAATTCTATAGG 59.248 45.833 7.86 10.29 0.00 2.57
1056 1057 5.360591 ACGGCTTTCCACAGAATTCTATAG 58.639 41.667 7.86 0.00 0.00 1.31
1057 1058 5.353394 ACGGCTTTCCACAGAATTCTATA 57.647 39.130 7.86 0.00 0.00 1.31
1058 1059 4.222124 ACGGCTTTCCACAGAATTCTAT 57.778 40.909 7.86 0.00 0.00 1.98
1059 1060 3.695830 ACGGCTTTCCACAGAATTCTA 57.304 42.857 7.86 0.00 0.00 2.10
1060 1061 2.568623 ACGGCTTTCCACAGAATTCT 57.431 45.000 0.88 0.88 0.00 2.40
1061 1062 4.494199 CGAATACGGCTTTCCACAGAATTC 60.494 45.833 0.00 0.00 35.72 2.17
1062 1063 3.374058 CGAATACGGCTTTCCACAGAATT 59.626 43.478 0.00 0.00 35.72 2.17
1063 1064 2.936498 CGAATACGGCTTTCCACAGAAT 59.064 45.455 0.00 0.00 35.72 2.40
1064 1065 2.028839 TCGAATACGGCTTTCCACAGAA 60.029 45.455 0.00 0.00 40.21 3.02
1065 1066 1.546923 TCGAATACGGCTTTCCACAGA 59.453 47.619 0.00 0.00 40.21 3.41
1066 1067 2.004583 TCGAATACGGCTTTCCACAG 57.995 50.000 0.00 0.00 40.21 3.66
1067 1068 2.093921 TCATCGAATACGGCTTTCCACA 60.094 45.455 0.00 0.00 40.21 4.17
1068 1069 2.546778 TCATCGAATACGGCTTTCCAC 58.453 47.619 0.00 0.00 40.21 4.02
1069 1070 2.971660 TCATCGAATACGGCTTTCCA 57.028 45.000 0.00 0.00 40.21 3.53
1070 1071 3.621715 ACTTTCATCGAATACGGCTTTCC 59.378 43.478 0.00 0.00 40.21 3.13
1071 1072 4.548346 CGACTTTCATCGAATACGGCTTTC 60.548 45.833 0.00 0.00 45.13 2.62
1072 1073 3.306166 CGACTTTCATCGAATACGGCTTT 59.694 43.478 0.00 0.00 45.13 3.51
1073 1074 2.858344 CGACTTTCATCGAATACGGCTT 59.142 45.455 0.00 0.00 45.13 4.35
1074 1075 2.159282 ACGACTTTCATCGAATACGGCT 60.159 45.455 1.63 0.00 45.13 5.52
1075 1076 2.190981 ACGACTTTCATCGAATACGGC 58.809 47.619 1.63 0.00 45.13 5.68
1076 1077 4.974275 ACATACGACTTTCATCGAATACGG 59.026 41.667 1.63 0.00 45.13 4.02
1077 1078 7.008837 GTACATACGACTTTCATCGAATACG 57.991 40.000 1.63 0.00 45.13 3.06
1094 1095 1.068741 CTCCCTCCAAGCCGTACATAC 59.931 57.143 0.00 0.00 0.00 2.39
1095 1096 1.063492 TCTCCCTCCAAGCCGTACATA 60.063 52.381 0.00 0.00 0.00 2.29
1096 1097 0.325296 TCTCCCTCCAAGCCGTACAT 60.325 55.000 0.00 0.00 0.00 2.29
1097 1098 0.325296 ATCTCCCTCCAAGCCGTACA 60.325 55.000 0.00 0.00 0.00 2.90
1098 1099 0.389757 GATCTCCCTCCAAGCCGTAC 59.610 60.000 0.00 0.00 0.00 3.67
1099 1100 0.261991 AGATCTCCCTCCAAGCCGTA 59.738 55.000 0.00 0.00 0.00 4.02
1100 1101 0.618968 AAGATCTCCCTCCAAGCCGT 60.619 55.000 0.00 0.00 0.00 5.68
1101 1102 0.543749 AAAGATCTCCCTCCAAGCCG 59.456 55.000 0.00 0.00 0.00 5.52
1102 1103 1.133945 GGAAAGATCTCCCTCCAAGCC 60.134 57.143 11.72 0.00 0.00 4.35
1103 1104 1.843206 AGGAAAGATCTCCCTCCAAGC 59.157 52.381 16.69 0.00 35.95 4.01
1104 1105 5.154418 AGATAGGAAAGATCTCCCTCCAAG 58.846 45.833 17.12 0.00 35.95 3.61
1105 1106 5.163259 AGATAGGAAAGATCTCCCTCCAA 57.837 43.478 17.12 4.32 35.95 3.53
1106 1107 4.841813 AGATAGGAAAGATCTCCCTCCA 57.158 45.455 17.12 4.91 35.95 3.86
1107 1108 5.279256 CGAAAGATAGGAAAGATCTCCCTCC 60.279 48.000 17.12 13.23 35.95 4.30
1108 1109 5.536916 TCGAAAGATAGGAAAGATCTCCCTC 59.463 44.000 17.12 7.34 32.33 4.30
1109 1110 5.459505 TCGAAAGATAGGAAAGATCTCCCT 58.540 41.667 17.58 17.58 32.33 4.20
1110 1111 5.536916 TCTCGAAAGATAGGAAAGATCTCCC 59.463 44.000 0.00 0.30 40.84 4.30
1111 1112 6.642707 TCTCGAAAGATAGGAAAGATCTCC 57.357 41.667 0.00 0.00 40.84 3.71
1112 1113 7.040062 TGGATCTCGAAAGATAGGAAAGATCTC 60.040 40.741 0.00 0.00 42.46 2.75
1113 1114 6.780031 TGGATCTCGAAAGATAGGAAAGATCT 59.220 38.462 8.78 0.00 42.46 2.75
1114 1115 6.866248 GTGGATCTCGAAAGATAGGAAAGATC 59.134 42.308 0.00 0.00 42.46 2.75
1115 1116 6.239458 GGTGGATCTCGAAAGATAGGAAAGAT 60.239 42.308 0.00 0.00 42.46 2.40
1116 1117 5.069251 GGTGGATCTCGAAAGATAGGAAAGA 59.931 44.000 0.00 0.00 42.46 2.52
1117 1118 5.293560 GGTGGATCTCGAAAGATAGGAAAG 58.706 45.833 0.00 0.00 42.46 2.62
1118 1119 4.101119 GGGTGGATCTCGAAAGATAGGAAA 59.899 45.833 0.00 0.00 42.46 3.13
1119 1120 3.641906 GGGTGGATCTCGAAAGATAGGAA 59.358 47.826 0.00 0.00 42.46 3.36
1120 1121 3.117093 AGGGTGGATCTCGAAAGATAGGA 60.117 47.826 0.00 0.00 42.46 2.94
1121 1122 3.235200 AGGGTGGATCTCGAAAGATAGG 58.765 50.000 0.00 0.00 42.46 2.57
1122 1123 4.827835 TGTAGGGTGGATCTCGAAAGATAG 59.172 45.833 0.00 0.00 42.46 2.08
1123 1124 4.800023 TGTAGGGTGGATCTCGAAAGATA 58.200 43.478 0.00 0.00 42.46 1.98
1124 1125 3.643237 TGTAGGGTGGATCTCGAAAGAT 58.357 45.455 0.00 0.00 45.16 2.40
1125 1126 3.095912 TGTAGGGTGGATCTCGAAAGA 57.904 47.619 0.00 0.00 39.12 2.52
1126 1127 3.887621 TTGTAGGGTGGATCTCGAAAG 57.112 47.619 0.00 0.00 0.00 2.62
1127 1128 5.221641 CCATATTGTAGGGTGGATCTCGAAA 60.222 44.000 0.00 0.00 33.53 3.46
1128 1129 4.283467 CCATATTGTAGGGTGGATCTCGAA 59.717 45.833 0.00 0.00 33.53 3.71
1129 1130 3.832490 CCATATTGTAGGGTGGATCTCGA 59.168 47.826 0.00 0.00 33.53 4.04
1130 1131 3.055819 CCCATATTGTAGGGTGGATCTCG 60.056 52.174 0.00 0.00 40.34 4.04
1131 1132 3.264450 CCCCATATTGTAGGGTGGATCTC 59.736 52.174 0.00 0.00 43.89 2.75
1132 1133 3.260205 CCCCATATTGTAGGGTGGATCT 58.740 50.000 0.00 0.00 43.89 2.75
1133 1134 3.721087 CCCCATATTGTAGGGTGGATC 57.279 52.381 0.00 0.00 43.89 3.36
1140 1141 4.099419 GGCTTTTTGACCCCATATTGTAGG 59.901 45.833 0.00 0.00 0.00 3.18
1141 1142 4.709397 TGGCTTTTTGACCCCATATTGTAG 59.291 41.667 0.00 0.00 0.00 2.74
1142 1143 4.678256 TGGCTTTTTGACCCCATATTGTA 58.322 39.130 0.00 0.00 0.00 2.41
1143 1144 3.515562 TGGCTTTTTGACCCCATATTGT 58.484 40.909 0.00 0.00 0.00 2.71
1144 1145 4.550076 TTGGCTTTTTGACCCCATATTG 57.450 40.909 0.00 0.00 0.00 1.90
1145 1146 5.574970 TTTTGGCTTTTTGACCCCATATT 57.425 34.783 0.00 0.00 0.00 1.28
1146 1147 5.574970 TTTTTGGCTTTTTGACCCCATAT 57.425 34.783 0.00 0.00 0.00 1.78
1148 1149 3.941704 TTTTTGGCTTTTTGACCCCAT 57.058 38.095 0.00 0.00 0.00 4.00
1182 1183 9.271921 AGAATCCATTTTCTTTTTATAAGGGCT 57.728 29.630 0.00 0.00 31.94 5.19
1183 1184 9.890629 AAGAATCCATTTTCTTTTTATAAGGGC 57.109 29.630 0.00 0.00 41.95 5.19
1190 1191 9.981114 GAGGTTCAAGAATCCATTTTCTTTTTA 57.019 29.630 0.00 0.00 41.95 1.52
1191 1192 8.708378 AGAGGTTCAAGAATCCATTTTCTTTTT 58.292 29.630 0.00 0.00 41.95 1.94
1192 1193 8.255111 AGAGGTTCAAGAATCCATTTTCTTTT 57.745 30.769 0.00 0.00 41.95 2.27
1193 1194 7.846101 AGAGGTTCAAGAATCCATTTTCTTT 57.154 32.000 0.00 0.00 41.95 2.52
1194 1195 7.846101 AAGAGGTTCAAGAATCCATTTTCTT 57.154 32.000 0.00 0.00 44.71 2.52
1195 1196 7.506938 TGAAAGAGGTTCAAGAATCCATTTTCT 59.493 33.333 17.84 0.00 43.43 2.52
1196 1197 7.661040 TGAAAGAGGTTCAAGAATCCATTTTC 58.339 34.615 14.56 14.56 43.43 2.29
1197 1198 7.601705 TGAAAGAGGTTCAAGAATCCATTTT 57.398 32.000 0.00 0.00 43.43 1.82
1209 1210 2.224281 ACATGAGCGTGAAAGAGGTTCA 60.224 45.455 0.00 0.00 44.20 3.18
1210 1211 2.413453 GACATGAGCGTGAAAGAGGTTC 59.587 50.000 0.00 0.00 36.70 3.62
1211 1212 2.224281 TGACATGAGCGTGAAAGAGGTT 60.224 45.455 0.00 0.00 0.00 3.50
1212 1213 1.344438 TGACATGAGCGTGAAAGAGGT 59.656 47.619 0.00 0.00 0.00 3.85
1213 1214 1.728971 GTGACATGAGCGTGAAAGAGG 59.271 52.381 0.00 0.00 0.00 3.69
1214 1215 1.388093 CGTGACATGAGCGTGAAAGAG 59.612 52.381 0.00 0.00 0.00 2.85
1215 1216 1.269569 ACGTGACATGAGCGTGAAAGA 60.270 47.619 0.00 0.00 37.47 2.52
1216 1217 1.125021 GACGTGACATGAGCGTGAAAG 59.875 52.381 15.68 0.00 39.06 2.62
1217 1218 1.136690 GACGTGACATGAGCGTGAAA 58.863 50.000 15.68 0.00 39.06 2.69
1218 1219 1.001745 CGACGTGACATGAGCGTGAA 61.002 55.000 15.68 0.00 39.06 3.18
1219 1220 1.442017 CGACGTGACATGAGCGTGA 60.442 57.895 15.68 0.00 39.06 4.35
1220 1221 1.398762 CTCGACGTGACATGAGCGTG 61.399 60.000 15.68 2.58 39.06 5.34
1221 1222 1.154207 CTCGACGTGACATGAGCGT 60.154 57.895 0.00 6.69 41.81 5.07
1222 1223 1.869574 CCTCGACGTGACATGAGCG 60.870 63.158 0.00 5.13 0.00 5.03
1223 1224 0.450583 TACCTCGACGTGACATGAGC 59.549 55.000 0.00 0.00 0.00 4.26
1224 1225 1.738350 AGTACCTCGACGTGACATGAG 59.262 52.381 0.00 0.00 0.00 2.90
1225 1226 1.467342 CAGTACCTCGACGTGACATGA 59.533 52.381 0.00 0.00 0.00 3.07
1226 1227 1.896345 CAGTACCTCGACGTGACATG 58.104 55.000 0.00 0.00 0.00 3.21
1227 1228 0.170561 GCAGTACCTCGACGTGACAT 59.829 55.000 0.00 0.00 0.00 3.06
1228 1229 1.167781 TGCAGTACCTCGACGTGACA 61.168 55.000 0.00 0.00 0.00 3.58
1229 1230 0.454620 CTGCAGTACCTCGACGTGAC 60.455 60.000 5.25 0.00 0.00 3.67
1230 1231 0.604511 TCTGCAGTACCTCGACGTGA 60.605 55.000 14.67 0.00 0.00 4.35
1231 1232 0.240145 TTCTGCAGTACCTCGACGTG 59.760 55.000 14.67 0.00 0.00 4.49
1232 1233 0.956633 TTTCTGCAGTACCTCGACGT 59.043 50.000 14.67 0.00 0.00 4.34
1233 1234 2.060326 TTTTCTGCAGTACCTCGACG 57.940 50.000 14.67 0.00 0.00 5.12
1250 1251 5.221422 TGGATCGGATTTTGCAGTTCTTTTT 60.221 36.000 0.00 0.00 0.00 1.94
1251 1252 4.280677 TGGATCGGATTTTGCAGTTCTTTT 59.719 37.500 0.00 0.00 0.00 2.27
1252 1253 3.826157 TGGATCGGATTTTGCAGTTCTTT 59.174 39.130 0.00 0.00 0.00 2.52
1253 1254 3.420893 TGGATCGGATTTTGCAGTTCTT 58.579 40.909 0.00 0.00 0.00 2.52
1254 1255 3.071874 TGGATCGGATTTTGCAGTTCT 57.928 42.857 0.00 0.00 0.00 3.01
1255 1256 3.848272 TTGGATCGGATTTTGCAGTTC 57.152 42.857 0.00 0.00 0.00 3.01
1256 1257 4.806640 AATTGGATCGGATTTTGCAGTT 57.193 36.364 0.00 0.00 0.00 3.16
1257 1258 4.806640 AAATTGGATCGGATTTTGCAGT 57.193 36.364 0.00 0.00 0.00 4.40
1258 1259 5.220265 CGAAAAATTGGATCGGATTTTGCAG 60.220 40.000 16.93 9.87 36.06 4.41
1259 1260 4.624882 CGAAAAATTGGATCGGATTTTGCA 59.375 37.500 16.93 0.00 36.06 4.08
1260 1261 4.625311 ACGAAAAATTGGATCGGATTTTGC 59.375 37.500 14.60 12.66 40.71 3.68
1261 1262 7.804614 TTACGAAAAATTGGATCGGATTTTG 57.195 32.000 14.60 8.57 40.71 2.44
1262 1263 7.431084 CGATTACGAAAAATTGGATCGGATTTT 59.569 33.333 10.26 10.26 42.66 1.82
1263 1264 6.910433 CGATTACGAAAAATTGGATCGGATTT 59.090 34.615 11.09 0.53 42.66 2.17
1264 1265 6.259167 TCGATTACGAAAAATTGGATCGGATT 59.741 34.615 11.09 1.49 45.74 3.01
1265 1266 5.756347 TCGATTACGAAAAATTGGATCGGAT 59.244 36.000 11.09 0.00 45.74 4.18
1266 1267 5.110598 TCGATTACGAAAAATTGGATCGGA 58.889 37.500 11.09 1.69 45.74 4.55
1267 1268 5.398176 TCGATTACGAAAAATTGGATCGG 57.602 39.130 11.09 0.00 45.74 4.18
1281 1282 6.477688 ACCACCATGTTAACTAATCGATTACG 59.522 38.462 13.85 12.12 41.26 3.18
1282 1283 7.781548 ACCACCATGTTAACTAATCGATTAC 57.218 36.000 13.85 7.35 0.00 1.89
1283 1284 9.887629 TTAACCACCATGTTAACTAATCGATTA 57.112 29.630 16.69 16.69 36.15 1.75
1284 1285 8.795842 TTAACCACCATGTTAACTAATCGATT 57.204 30.769 16.15 16.15 36.15 3.34
1301 1302 6.237915 CGTCTTTCATAATACGGTTAACCACC 60.238 42.308 24.14 0.00 43.16 4.61
1302 1303 6.237915 CCGTCTTTCATAATACGGTTAACCAC 60.238 42.308 24.14 8.84 44.47 4.16
1303 1304 5.811613 CCGTCTTTCATAATACGGTTAACCA 59.188 40.000 24.14 6.28 44.47 3.67
1304 1305 6.277918 CCGTCTTTCATAATACGGTTAACC 57.722 41.667 15.13 15.13 44.47 2.85
1334 1335 8.944029 CGATAGAGAATTTGATAAGCCAATGAT 58.056 33.333 0.00 0.00 39.76 2.45
1335 1336 8.150296 TCGATAGAGAATTTGATAAGCCAATGA 58.850 33.333 0.00 0.00 42.67 2.57
1336 1337 8.315391 TCGATAGAGAATTTGATAAGCCAATG 57.685 34.615 0.00 0.00 42.67 2.82
1355 1356 4.566759 TGAATCTTTTTCACGGCTCGATAG 59.433 41.667 1.50 0.00 0.00 2.08
1356 1357 4.500127 TGAATCTTTTTCACGGCTCGATA 58.500 39.130 1.50 0.00 0.00 2.92
1357 1358 3.334691 TGAATCTTTTTCACGGCTCGAT 58.665 40.909 1.50 0.00 0.00 3.59
1358 1359 2.761559 TGAATCTTTTTCACGGCTCGA 58.238 42.857 1.50 0.00 0.00 4.04
1359 1360 3.226347 GTTGAATCTTTTTCACGGCTCG 58.774 45.455 0.00 0.00 0.00 5.03
1360 1361 4.223320 TGTTGAATCTTTTTCACGGCTC 57.777 40.909 0.00 0.00 0.00 4.70
1361 1362 4.647424 TTGTTGAATCTTTTTCACGGCT 57.353 36.364 0.00 0.00 0.00 5.52
1362 1363 5.710613 TTTTGTTGAATCTTTTTCACGGC 57.289 34.783 0.00 0.00 0.00 5.68
1363 1364 8.690840 GTCTATTTTGTTGAATCTTTTTCACGG 58.309 33.333 0.00 0.00 0.00 4.94
1364 1365 8.409690 CGTCTATTTTGTTGAATCTTTTTCACG 58.590 33.333 0.00 0.00 0.00 4.35
1365 1366 9.445786 TCGTCTATTTTGTTGAATCTTTTTCAC 57.554 29.630 0.00 0.00 0.00 3.18
1510 1516 8.840321 TCTCTCATTCCTTTCTTACAAACAAAG 58.160 33.333 0.00 0.00 0.00 2.77
1617 1626 7.181569 TCCTTTTGTTCTTCTTCCATTTGTT 57.818 32.000 0.00 0.00 0.00 2.83
1618 1627 6.790232 TCCTTTTGTTCTTCTTCCATTTGT 57.210 33.333 0.00 0.00 0.00 2.83
1619 1628 8.667076 AAATCCTTTTGTTCTTCTTCCATTTG 57.333 30.769 0.00 0.00 0.00 2.32
1620 1629 9.987272 CTAAATCCTTTTGTTCTTCTTCCATTT 57.013 29.630 0.00 0.00 0.00 2.32
1621 1630 9.147732 ACTAAATCCTTTTGTTCTTCTTCCATT 57.852 29.630 0.00 0.00 0.00 3.16
1622 1631 8.712228 ACTAAATCCTTTTGTTCTTCTTCCAT 57.288 30.769 0.00 0.00 0.00 3.41
1623 1632 8.533569 AACTAAATCCTTTTGTTCTTCTTCCA 57.466 30.769 0.00 0.00 34.36 3.53
1687 1696 3.071479 GTCTACGCTGGTTCAAATCCAA 58.929 45.455 0.00 0.00 34.35 3.53
2100 2625 1.134729 GCGGGATGGATGCATTTTTGT 60.135 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.