Multiple sequence alignment - TraesCS6B01G250000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G250000 chr6B 100.000 2663 0 0 1 2663 449448705 449446043 0.000000e+00 4918.0
1 TraesCS6B01G250000 chr6B 85.714 63 4 3 1916 1973 581311144 581311206 7.960000e-06 62.1
2 TraesCS6B01G250000 chr6D 93.981 2027 74 25 1 2002 289025460 289023457 0.000000e+00 3024.0
3 TraesCS6B01G250000 chr6D 92.479 585 38 4 2081 2663 289022063 289021483 0.000000e+00 832.0
4 TraesCS6B01G250000 chr6D 84.127 63 5 3 1916 1973 388635483 388635545 3.700000e-04 56.5
5 TraesCS6B01G250000 chr6A 94.324 1339 46 12 729 2046 436120564 436121893 0.000000e+00 2025.0
6 TraesCS6B01G250000 chr6A 94.090 643 33 4 2025 2663 436121900 436122541 0.000000e+00 972.0
7 TraesCS6B01G250000 chr6A 90.000 430 26 14 281 702 436120146 436120566 8.390000e-150 540.0
8 TraesCS6B01G250000 chr6A 88.768 276 30 1 4 278 436119564 436119839 1.180000e-88 337.0
9 TraesCS6B01G250000 chr6A 75.709 247 45 11 4 247 498005806 498006040 2.800000e-20 110.0
10 TraesCS6B01G250000 chr6A 74.793 242 49 8 4 244 66822903 66823133 6.070000e-17 99.0
11 TraesCS6B01G250000 chr7A 76.230 244 47 7 4 247 509223689 509223921 4.660000e-23 119.0
12 TraesCS6B01G250000 chr7B 75.564 266 37 18 1 257 726159542 726159788 3.630000e-19 106.0
13 TraesCS6B01G250000 chr3A 74.590 244 52 7 4 247 645790503 645790736 6.070000e-17 99.0
14 TraesCS6B01G250000 chr5A 74.900 251 44 15 1 247 322618284 322618519 2.180000e-16 97.1
15 TraesCS6B01G250000 chr2B 75.221 226 39 9 1 224 42275057 42274847 1.020000e-14 91.6
16 TraesCS6B01G250000 chr1D 83.750 80 9 3 2353 2429 45281062 45281140 3.680000e-09 73.1
17 TraesCS6B01G250000 chr4D 81.481 81 9 4 2361 2437 418512861 418512939 7.960000e-06 62.1
18 TraesCS6B01G250000 chrUn 87.037 54 5 2 2351 2402 43048404 43048351 2.860000e-05 60.2
19 TraesCS6B01G250000 chrUn 87.037 54 5 2 2351 2402 219484041 219484094 2.860000e-05 60.2
20 TraesCS6B01G250000 chrUn 87.037 54 5 2 2351 2402 237802386 237802439 2.860000e-05 60.2
21 TraesCS6B01G250000 chrUn 87.037 54 5 2 2351 2402 290208548 290208601 2.860000e-05 60.2
22 TraesCS6B01G250000 chrUn 87.037 54 5 2 2351 2402 401452865 401452812 2.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G250000 chr6B 449446043 449448705 2662 True 4918.0 4918 100.0000 1 2663 1 chr6B.!!$R1 2662
1 TraesCS6B01G250000 chr6D 289021483 289025460 3977 True 1928.0 3024 93.2300 1 2663 2 chr6D.!!$R1 2662
2 TraesCS6B01G250000 chr6A 436119564 436122541 2977 False 968.5 2025 91.7955 4 2663 4 chr6A.!!$F3 2659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 637 0.035343 GGTAGACTTTGGGGCTGGAC 60.035 60.0 0.0 0.0 33.7 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2854 0.25363 TATCTCACCCCAAGGCCCTT 60.254 55.0 0.0 0.0 36.11 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 4.779993 AGAGCCCTTTGGTTTATAGGAG 57.220 45.455 0.00 0.00 0.00 3.69
37 39 4.524053 CCTTTGGTTTATAGGAGTGGGTC 58.476 47.826 0.00 0.00 0.00 4.46
61 63 7.949006 GTCCCTAACTTCCTATTCCTATGTAGA 59.051 40.741 0.00 0.00 0.00 2.59
259 263 2.105993 ACGAACCAAGGAAAGCCTAAGT 59.894 45.455 0.00 0.00 46.28 2.24
260 264 2.484264 CGAACCAAGGAAAGCCTAAGTG 59.516 50.000 0.00 0.00 46.28 3.16
261 265 3.487372 GAACCAAGGAAAGCCTAAGTGT 58.513 45.455 0.00 0.00 46.28 3.55
262 266 3.141767 ACCAAGGAAAGCCTAAGTGTC 57.858 47.619 0.00 0.00 46.28 3.67
263 267 2.711547 ACCAAGGAAAGCCTAAGTGTCT 59.288 45.455 0.00 0.00 46.28 3.41
264 268 3.244596 ACCAAGGAAAGCCTAAGTGTCTC 60.245 47.826 0.00 0.00 46.28 3.36
265 269 3.244561 CCAAGGAAAGCCTAAGTGTCTCA 60.245 47.826 0.00 0.00 46.28 3.27
266 270 3.971245 AGGAAAGCCTAAGTGTCTCAG 57.029 47.619 0.00 0.00 44.74 3.35
267 271 2.027653 AGGAAAGCCTAAGTGTCTCAGC 60.028 50.000 0.00 0.00 44.74 4.26
268 272 2.289694 GGAAAGCCTAAGTGTCTCAGCA 60.290 50.000 0.00 0.00 0.00 4.41
269 273 2.464157 AAGCCTAAGTGTCTCAGCAC 57.536 50.000 0.00 0.00 39.51 4.40
270 274 0.244994 AGCCTAAGTGTCTCAGCACG 59.755 55.000 0.00 0.00 43.61 5.34
271 275 0.038159 GCCTAAGTGTCTCAGCACGT 60.038 55.000 0.00 0.00 43.61 4.49
272 276 1.201647 GCCTAAGTGTCTCAGCACGTA 59.798 52.381 0.00 0.00 43.61 3.57
279 283 3.508012 AGTGTCTCAGCACGTAGATTTCT 59.492 43.478 0.00 0.00 43.61 2.52
283 605 1.009829 CAGCACGTAGATTTCTGCCC 58.990 55.000 0.00 0.00 0.00 5.36
310 632 3.079578 GTGTTTAGGTAGACTTTGGGGC 58.920 50.000 0.00 0.00 0.00 5.80
312 634 3.244770 TGTTTAGGTAGACTTTGGGGCTG 60.245 47.826 0.00 0.00 33.70 4.85
314 636 0.178873 AGGTAGACTTTGGGGCTGGA 60.179 55.000 0.00 0.00 33.70 3.86
315 637 0.035343 GGTAGACTTTGGGGCTGGAC 60.035 60.000 0.00 0.00 33.70 4.02
358 685 7.149202 AGAAATCATGTAAGGCTGGGTATAA 57.851 36.000 0.00 0.00 0.00 0.98
522 849 4.495422 AGTCGAATGTTCCTGATGTGTAC 58.505 43.478 0.00 0.00 0.00 2.90
556 883 2.818814 CGCGAGCGTTAATACAGATG 57.181 50.000 0.00 0.00 34.35 2.90
561 888 5.191059 GCGAGCGTTAATACAGATGAAAAG 58.809 41.667 0.00 0.00 0.00 2.27
591 918 0.749454 GGGAGCATGTCGGCATTTCT 60.749 55.000 0.00 0.00 35.83 2.52
614 941 6.592607 TCTTCTGGTCCATGAACGTTAATTAC 59.407 38.462 0.00 0.00 0.00 1.89
616 943 7.172868 TCTGGTCCATGAACGTTAATTACTA 57.827 36.000 0.00 0.00 0.00 1.82
617 944 7.262772 TCTGGTCCATGAACGTTAATTACTAG 58.737 38.462 0.00 7.74 0.00 2.57
620 947 7.879160 TGGTCCATGAACGTTAATTACTAGTTT 59.121 33.333 0.00 0.00 0.00 2.66
621 948 8.724229 GGTCCATGAACGTTAATTACTAGTTTT 58.276 33.333 0.00 0.00 0.00 2.43
624 951 9.977762 CCATGAACGTTAATTACTAGTTTTACC 57.022 33.333 0.00 0.00 0.00 2.85
627 954 9.762933 TGAACGTTAATTACTAGTTTTACCAGT 57.237 29.630 0.00 0.00 0.00 4.00
639 966 9.427821 ACTAGTTTTACCAGTATCATCAGAGAT 57.572 33.333 0.00 0.00 0.00 2.75
657 984 1.202348 GATACCAAAACTGCAGCACCC 59.798 52.381 15.27 0.00 0.00 4.61
846 1173 1.221909 ATCCCCCTTTCCCCTTCCAC 61.222 60.000 0.00 0.00 0.00 4.02
887 1214 1.904990 GAAGCCCTCTCACACCTCCC 61.905 65.000 0.00 0.00 0.00 4.30
917 1244 4.160439 CCACCTATCTCAAGCTCACTACAA 59.840 45.833 0.00 0.00 0.00 2.41
1240 1572 3.387947 CCTACAAGGCCGACCCGT 61.388 66.667 0.00 0.00 39.21 5.28
1359 1691 2.579873 GACTACCAGTATGCCCTCGTA 58.420 52.381 0.00 0.00 31.97 3.43
1394 1726 3.361786 GGAAAAGCCTATGGGTAAGCAA 58.638 45.455 0.00 0.00 30.99 3.91
1396 1728 4.142160 GGAAAAGCCTATGGGTAAGCAAAG 60.142 45.833 0.00 0.00 30.99 2.77
1397 1729 2.058593 AGCCTATGGGTAAGCAAAGC 57.941 50.000 0.00 0.00 34.45 3.51
1398 1730 1.284785 AGCCTATGGGTAAGCAAAGCA 59.715 47.619 0.00 0.00 34.45 3.91
1399 1731 2.091665 AGCCTATGGGTAAGCAAAGCAT 60.092 45.455 0.00 0.00 34.45 3.79
1400 1732 3.138283 AGCCTATGGGTAAGCAAAGCATA 59.862 43.478 0.00 0.00 34.45 3.14
1401 1733 3.253432 GCCTATGGGTAAGCAAAGCATAC 59.747 47.826 0.00 0.00 32.83 2.39
1402 1734 4.460263 CCTATGGGTAAGCAAAGCATACA 58.540 43.478 6.70 0.00 34.89 2.29
1405 1737 6.886459 CCTATGGGTAAGCAAAGCATACATAT 59.114 38.462 6.70 3.40 34.89 1.78
1406 1738 6.579666 ATGGGTAAGCAAAGCATACATATG 57.420 37.500 0.00 0.00 34.89 1.78
1770 2123 5.297547 TCTCTATGGTGTCGAATAAATGGC 58.702 41.667 0.00 0.00 0.00 4.40
1799 2155 5.045872 GTGATATGGTACTACCGTTTCCAC 58.954 45.833 5.23 7.69 42.58 4.02
1832 2188 2.972625 TGACGAGCTTTATCAACTGGG 58.027 47.619 0.00 0.00 0.00 4.45
1913 2270 1.968493 TCTGTTAGTCGGTTTGCTCCT 59.032 47.619 0.00 0.00 0.00 3.69
1944 2301 1.269154 GCTTCCTACTCGATCGTTCCC 60.269 57.143 15.94 0.00 0.00 3.97
2010 2788 4.808895 TGTACGCTGGACATTGATATTCAC 59.191 41.667 0.00 0.00 0.00 3.18
2020 2798 5.393124 ACATTGATATTCACGCAAACACAG 58.607 37.500 0.00 0.00 0.00 3.66
2048 2854 5.596836 ACCTGTTAACCGATAACCGATAA 57.403 39.130 2.48 0.00 42.74 1.75
2116 3790 9.896263 TGTTAACCGATAACCAAAATAAGAAAC 57.104 29.630 2.48 0.00 42.74 2.78
2166 3840 8.318412 TCTAATACTTGTGGCAAGTCTGATTTA 58.682 33.333 16.48 8.52 0.00 1.40
2204 3878 3.502191 AACGAATGTGCGCCAAAATAT 57.498 38.095 4.18 0.00 33.86 1.28
2213 3889 7.686438 ATGTGCGCCAAAATATATCATCTTA 57.314 32.000 4.18 0.00 0.00 2.10
2247 3923 8.879759 GTTTGTCTCAGTCGATTTTTATATGGA 58.120 33.333 0.00 0.00 0.00 3.41
2248 3924 8.420374 TTGTCTCAGTCGATTTTTATATGGAC 57.580 34.615 0.00 0.00 34.58 4.02
2270 3946 0.108138 AGTCGAGCCTATGCAACCAC 60.108 55.000 0.00 0.00 41.13 4.16
2308 3984 2.036346 AGATGCTTGGGCTTGTTTTCAC 59.964 45.455 0.00 0.00 39.59 3.18
2324 4000 9.729023 CTTGTTTTCACACATAACATAAACTGA 57.271 29.630 0.00 0.00 32.39 3.41
2351 4027 2.579873 AGCTGCAAAGACACAAGACAT 58.420 42.857 1.02 0.00 0.00 3.06
2358 4034 6.804677 TGCAAAGACACAAGACATAAACAAT 58.195 32.000 0.00 0.00 0.00 2.71
2403 4079 9.481340 AAGTTTTCTAAGGAAGAATGAATTTGC 57.519 29.630 0.00 0.00 43.75 3.68
2404 4080 8.641541 AGTTTTCTAAGGAAGAATGAATTTGCA 58.358 29.630 0.00 0.00 43.75 4.08
2653 4331 6.201425 CCAAGGAAAAATAAATCGATGGCATG 59.799 38.462 3.81 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 3.136077 GGAATAGGAAGTTAGGGACCCAC 59.864 52.174 14.60 2.60 0.00 4.61
37 39 8.722622 TTCTACATAGGAATAGGAAGTTAGGG 57.277 38.462 0.00 0.00 0.00 3.53
99 101 4.996788 TTCCGTTCAGTCTAGGATAACC 57.003 45.455 0.00 0.00 32.19 2.85
132 135 0.251564 ATGGCATTTGGTTCACCGGA 60.252 50.000 9.46 0.00 39.43 5.14
135 138 2.170166 TGAGATGGCATTTGGTTCACC 58.830 47.619 0.00 0.00 0.00 4.02
219 222 6.925165 GGTTCGTAGGATAAAAATATCACGGA 59.075 38.462 8.10 0.00 31.17 4.69
239 243 2.484264 CACTTAGGCTTTCCTTGGTTCG 59.516 50.000 0.00 0.00 40.66 3.95
259 263 3.838120 CAGAAATCTACGTGCTGAGACA 58.162 45.455 0.00 0.00 0.00 3.41
260 264 2.600867 GCAGAAATCTACGTGCTGAGAC 59.399 50.000 0.00 0.00 32.97 3.36
261 265 2.417379 GGCAGAAATCTACGTGCTGAGA 60.417 50.000 0.00 0.00 36.15 3.27
262 266 1.929836 GGCAGAAATCTACGTGCTGAG 59.070 52.381 0.00 0.00 36.15 3.35
263 267 1.405526 GGGCAGAAATCTACGTGCTGA 60.406 52.381 0.00 0.00 36.15 4.26
264 268 1.009829 GGGCAGAAATCTACGTGCTG 58.990 55.000 0.00 0.00 36.15 4.41
265 269 0.905357 AGGGCAGAAATCTACGTGCT 59.095 50.000 0.00 0.00 36.15 4.40
266 270 2.596904 TAGGGCAGAAATCTACGTGC 57.403 50.000 0.00 0.00 35.07 5.34
267 271 4.876107 ACAAATAGGGCAGAAATCTACGTG 59.124 41.667 0.00 0.00 0.00 4.49
268 272 4.876107 CACAAATAGGGCAGAAATCTACGT 59.124 41.667 0.00 0.00 0.00 3.57
269 273 4.876107 ACACAAATAGGGCAGAAATCTACG 59.124 41.667 0.00 0.00 0.00 3.51
270 274 6.759497 AACACAAATAGGGCAGAAATCTAC 57.241 37.500 0.00 0.00 0.00 2.59
271 275 7.556275 CCTAAACACAAATAGGGCAGAAATCTA 59.444 37.037 0.00 0.00 35.95 1.98
272 276 6.378280 CCTAAACACAAATAGGGCAGAAATCT 59.622 38.462 0.00 0.00 35.95 2.40
279 283 5.249852 AGTCTACCTAAACACAAATAGGGCA 59.750 40.000 4.06 0.00 42.51 5.36
283 605 7.120726 CCCCAAAGTCTACCTAAACACAAATAG 59.879 40.741 0.00 0.00 0.00 1.73
310 632 1.144913 TCCCCAAGGTTGAAAGTCCAG 59.855 52.381 0.00 0.00 0.00 3.86
312 634 1.911057 CTCCCCAAGGTTGAAAGTCC 58.089 55.000 0.00 0.00 0.00 3.85
314 636 0.555769 TGCTCCCCAAGGTTGAAAGT 59.444 50.000 0.00 0.00 0.00 2.66
315 637 1.615392 CTTGCTCCCCAAGGTTGAAAG 59.385 52.381 0.00 0.00 45.78 2.62
358 685 0.321671 CCAGAACGTCCATGGACACT 59.678 55.000 37.42 29.21 44.77 3.55
484 811 1.471684 CGACTTCTAGCGTACAGGGTT 59.528 52.381 0.00 0.00 0.00 4.11
486 813 1.376543 TCGACTTCTAGCGTACAGGG 58.623 55.000 0.00 0.00 0.00 4.45
487 814 3.181499 ACATTCGACTTCTAGCGTACAGG 60.181 47.826 0.00 0.00 0.00 4.00
542 869 7.126398 GGACATCTTTTCATCTGTATTAACGC 58.874 38.462 0.00 0.00 0.00 4.84
556 883 3.511146 TGCTCCCAATTGGACATCTTTTC 59.489 43.478 26.60 4.84 38.61 2.29
561 888 2.360165 GACATGCTCCCAATTGGACATC 59.640 50.000 26.60 11.81 38.61 3.06
576 903 1.202222 CCAGAAGAAATGCCGACATGC 60.202 52.381 0.00 0.00 36.36 4.06
591 918 6.469410 AGTAATTAACGTTCATGGACCAGAA 58.531 36.000 2.82 1.33 0.00 3.02
616 943 8.643324 GGTATCTCTGATGATACTGGTAAAACT 58.357 37.037 18.23 0.00 44.78 2.66
617 944 8.421784 TGGTATCTCTGATGATACTGGTAAAAC 58.578 37.037 18.23 7.44 44.78 2.43
620 947 8.547481 TTTGGTATCTCTGATGATACTGGTAA 57.453 34.615 18.23 10.95 44.78 2.85
621 948 8.421784 GTTTTGGTATCTCTGATGATACTGGTA 58.578 37.037 18.23 0.00 44.78 3.25
622 949 7.126421 AGTTTTGGTATCTCTGATGATACTGGT 59.874 37.037 18.23 0.00 44.78 4.00
623 950 7.440556 CAGTTTTGGTATCTCTGATGATACTGG 59.559 40.741 18.23 5.79 44.78 4.00
624 951 7.042187 GCAGTTTTGGTATCTCTGATGATACTG 60.042 40.741 18.23 13.53 44.78 2.74
625 952 6.989169 GCAGTTTTGGTATCTCTGATGATACT 59.011 38.462 18.23 5.42 44.78 2.12
627 954 6.888105 TGCAGTTTTGGTATCTCTGATGATA 58.112 36.000 0.00 0.00 0.00 2.15
628 955 5.748402 TGCAGTTTTGGTATCTCTGATGAT 58.252 37.500 0.00 0.00 0.00 2.45
629 956 5.164620 TGCAGTTTTGGTATCTCTGATGA 57.835 39.130 0.00 0.00 0.00 2.92
631 958 3.944015 GCTGCAGTTTTGGTATCTCTGAT 59.056 43.478 16.64 0.00 0.00 2.90
632 959 3.244526 TGCTGCAGTTTTGGTATCTCTGA 60.245 43.478 16.64 0.00 0.00 3.27
633 960 3.076621 TGCTGCAGTTTTGGTATCTCTG 58.923 45.455 16.64 0.00 0.00 3.35
635 962 2.162408 GGTGCTGCAGTTTTGGTATCTC 59.838 50.000 16.64 0.00 0.00 2.75
637 964 1.202348 GGGTGCTGCAGTTTTGGTATC 59.798 52.381 16.64 0.00 0.00 2.24
639 966 0.106469 TGGGTGCTGCAGTTTTGGTA 60.106 50.000 16.64 0.00 0.00 3.25
640 967 0.975040 TTGGGTGCTGCAGTTTTGGT 60.975 50.000 16.64 0.00 0.00 3.67
641 968 0.177604 TTTGGGTGCTGCAGTTTTGG 59.822 50.000 16.64 0.00 0.00 3.28
642 969 2.021355 TTTTGGGTGCTGCAGTTTTG 57.979 45.000 16.64 0.00 0.00 2.44
643 970 2.563702 CATTTTGGGTGCTGCAGTTTT 58.436 42.857 16.64 0.00 0.00 2.43
646 973 2.051941 CCATTTTGGGTGCTGCAGT 58.948 52.632 16.64 0.00 32.67 4.40
657 984 1.213537 CCCAGACAGCGCCATTTTG 59.786 57.895 2.29 0.00 0.00 2.44
887 1214 7.123997 AGTGAGCTTGAGATAGGTGGATATATG 59.876 40.741 0.00 0.00 0.00 1.78
917 1244 1.202758 TCACGGTTGCTTGGATGAAGT 60.203 47.619 0.00 0.00 33.73 3.01
1240 1572 3.393970 CTTGGCCTCCTCGCTGGA 61.394 66.667 3.32 0.00 43.86 3.86
1396 1728 8.922676 AGCGTTGTTAGTAATACATATGTATGC 58.077 33.333 25.42 20.48 40.78 3.14
1400 1732 9.806203 TTGTAGCGTTGTTAGTAATACATATGT 57.194 29.630 13.93 13.93 0.00 2.29
1405 1737 6.089820 GCACTTGTAGCGTTGTTAGTAATACA 59.910 38.462 0.00 0.00 0.00 2.29
1406 1738 6.464311 GCACTTGTAGCGTTGTTAGTAATAC 58.536 40.000 0.00 0.00 0.00 1.89
1500 1849 1.939980 GGTTGTACACCTCCTCCTCT 58.060 55.000 0.00 0.00 43.29 3.69
1770 2123 4.579340 ACGGTAGTACCATATCACTGAGTG 59.421 45.833 19.41 6.18 38.47 3.51
1799 2155 1.656095 GCTCGTCATGGAGTCTTTTCG 59.344 52.381 0.00 0.00 36.41 3.46
1832 2188 0.512952 CAGTTTGCACGTAGGCTGTC 59.487 55.000 0.00 0.00 34.04 3.51
1837 2193 2.148916 TCAGTCAGTTTGCACGTAGG 57.851 50.000 0.00 0.00 0.00 3.18
1890 2247 4.222145 AGGAGCAAACCGACTAACAGAATA 59.778 41.667 0.00 0.00 34.73 1.75
1913 2270 5.010282 TCGAGTAGGAAGCATGCAGATATA 58.990 41.667 21.98 3.00 0.00 0.86
1944 2301 0.818296 AAGTGAGCAGCTAGTACGGG 59.182 55.000 0.00 0.00 0.00 5.28
2010 2788 2.096819 ACAGGTTTGTACTGTGTTTGCG 59.903 45.455 0.00 0.00 46.67 4.85
2020 2798 5.163963 CGGTTATCGGTTAACAGGTTTGTAC 60.164 44.000 8.10 0.00 41.74 2.90
2048 2854 0.253630 TATCTCACCCCAAGGCCCTT 60.254 55.000 0.00 0.00 36.11 3.95
2116 3790 1.067000 TCATGCGATTGGCCCTTTTTG 60.067 47.619 0.00 0.00 42.61 2.44
2166 3840 1.679153 GTTTGTCCGTTGGATGGTTGT 59.321 47.619 0.00 0.00 32.73 3.32
2204 3878 8.154203 TGAGACAAACTTTGGTGTAAGATGATA 58.846 33.333 6.47 0.00 34.12 2.15
2213 3889 2.936498 CGACTGAGACAAACTTTGGTGT 59.064 45.455 6.47 0.00 34.12 4.16
2247 3923 2.105128 GCATAGGCTCGACTGCGT 59.895 61.111 0.00 0.00 38.98 5.24
2248 3924 1.519234 TTGCATAGGCTCGACTGCG 60.519 57.895 0.00 0.00 41.91 5.18
2270 3946 2.977772 TCTGGTGGGCTTTTGTTTTG 57.022 45.000 0.00 0.00 0.00 2.44
2308 3984 7.283127 AGCTATTGGGTCAGTTTATGTTATGTG 59.717 37.037 0.00 0.00 0.00 3.21
2324 4000 2.162681 GTGTCTTTGCAGCTATTGGGT 58.837 47.619 0.00 0.00 0.00 4.51
2537 4215 8.840321 CCAATACCACTAATACATTCCTTCTTG 58.160 37.037 0.00 0.00 0.00 3.02
2607 4285 8.768019 CCTTGGAAAACTTCATTCTTTTGATTC 58.232 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.