Multiple sequence alignment - TraesCS6B01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G249900 chr6B 100.000 7912 0 0 1 7912 449045604 449037693 0.000000e+00 14611.0
1 TraesCS6B01G249900 chr6A 94.634 4398 124 39 3512 7835 436863256 436867615 0.000000e+00 6711.0
2 TraesCS6B01G249900 chr6A 96.243 3008 92 13 1 2992 436859734 436862736 0.000000e+00 4909.0
3 TraesCS6B01G249900 chr6A 94.416 591 21 2 3024 3602 436862720 436863310 0.000000e+00 898.0
4 TraesCS6B01G249900 chr6D 94.700 4377 130 38 3512 7839 288556511 288552188 0.000000e+00 6704.0
5 TraesCS6B01G249900 chr6D 96.628 3618 99 12 1 3602 288560067 288556457 0.000000e+00 5984.0
6 TraesCS6B01G249900 chr6D 81.667 180 22 8 330 509 288559910 288559742 1.070000e-28 139.0
7 TraesCS6B01G249900 chr6D 96.226 53 2 0 3512 3564 288556475 288556423 3.930000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G249900 chr6B 449037693 449045604 7911 True 14611.000000 14611 100.000000 1 7912 1 chr6B.!!$R1 7911
1 TraesCS6B01G249900 chr6A 436859734 436867615 7881 False 4172.666667 6711 95.097667 1 7835 3 chr6A.!!$F1 7834
2 TraesCS6B01G249900 chr6D 288552188 288560067 7879 True 3228.725000 6704 92.305250 1 7839 4 chr6D.!!$R1 7838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 756 1.021390 CAGAGAGCCGCACCGAAATT 61.021 55.000 0.00 0.0 0.00 1.82 F
1252 1260 1.618837 ACCTTGTCGCTGCTTCTCTTA 59.381 47.619 0.00 0.0 0.00 2.10 F
1404 1412 1.988107 TGAAATCCACCCTGCTCTTCT 59.012 47.619 0.00 0.0 0.00 2.85 F
1887 1895 2.112297 GTGGCAAAGGTCCGGTCA 59.888 61.111 0.00 0.0 0.00 4.02 F
3526 3602 1.801242 TCAAGGACCAGTGTCTCCAA 58.199 50.000 6.81 0.0 41.47 3.53 F
3704 3834 0.324091 AAGCCCAAGAAGCCATCTGG 60.324 55.000 0.00 0.0 38.79 3.86 F
4619 4749 0.759060 AACCAAGGGTCAAAGTGGGC 60.759 55.000 0.00 0.0 33.12 5.36 F
6154 6304 2.154462 CCACAAACCTAGCTCACCTTG 58.846 52.381 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2356 0.396695 CAGGAAGGGGAATGCAGCAT 60.397 55.000 0.52 0.52 0.00 3.79 R
2845 2863 2.310538 CAAGGGAGTGCCTTGAACTTT 58.689 47.619 33.49 0.00 45.09 2.66 R
3289 3365 2.509131 TGCCATCATCCACCTGAATGTA 59.491 45.455 0.00 0.00 0.00 2.29 R
3530 3606 0.034896 TCCTTTTGGAGACGCTGGTC 59.965 55.000 0.00 0.00 45.19 4.02 R
5338 5482 0.890683 AACCAAATAGCCACTGCAGC 59.109 50.000 15.27 0.00 41.13 5.25 R
5673 5820 3.005791 GGCAAATTAGACAGGCAGTTTGT 59.994 43.478 0.00 0.00 0.00 2.83 R
6300 6450 0.401738 CCTCTCCCTTTTCTGCCACA 59.598 55.000 0.00 0.00 0.00 4.17 R
7875 8078 0.035439 ACCCTCGATGCGTTCCAAAT 60.035 50.000 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 4.870221 TCGACGACTTCAAGATCGATTA 57.130 40.909 13.96 0.00 40.86 1.75
109 111 3.531538 GATTATCACTTCCAGTTGGCGA 58.468 45.455 0.00 0.00 34.44 5.54
193 196 1.533711 CACCTTATGCCCCCTCTGG 59.466 63.158 0.00 0.00 0.00 3.86
211 214 5.163311 CCTCTGGTTTGGGAAAGAAAAACAT 60.163 40.000 0.00 0.00 32.80 2.71
212 215 6.306643 TCTGGTTTGGGAAAGAAAAACATT 57.693 33.333 0.00 0.00 32.80 2.71
213 216 6.716284 TCTGGTTTGGGAAAGAAAAACATTT 58.284 32.000 0.00 0.00 32.80 2.32
251 254 3.688235 TGTTGATTGATGTGCAGGATGA 58.312 40.909 0.00 0.00 39.69 2.92
401 404 4.769345 TTCACATTTTTGCCCCTTCTTT 57.231 36.364 0.00 0.00 0.00 2.52
445 448 1.134068 CAGGAGGGCCTAAAACCTAGC 60.134 57.143 5.73 0.00 44.80 3.42
716 720 3.706373 CTCCACTCCACCACCCCG 61.706 72.222 0.00 0.00 0.00 5.73
752 756 1.021390 CAGAGAGCCGCACCGAAATT 61.021 55.000 0.00 0.00 0.00 1.82
859 863 4.787280 CCTCTCGCCCCCTCCAGT 62.787 72.222 0.00 0.00 0.00 4.00
1158 1162 6.533367 TGTTTATCTTGTTTGGTTTTCTGTGC 59.467 34.615 0.00 0.00 0.00 4.57
1252 1260 1.618837 ACCTTGTCGCTGCTTCTCTTA 59.381 47.619 0.00 0.00 0.00 2.10
1404 1412 1.988107 TGAAATCCACCCTGCTCTTCT 59.012 47.619 0.00 0.00 0.00 2.85
1435 1443 2.898729 ACTGCCGAGTCTGATTATGG 57.101 50.000 0.00 0.00 0.00 2.74
1481 1489 7.491682 ACTTGCTCATGTGATTTAACAAGTTT 58.508 30.769 9.14 0.00 42.69 2.66
1482 1490 7.436080 ACTTGCTCATGTGATTTAACAAGTTTG 59.564 33.333 9.14 0.00 42.69 2.93
1483 1491 7.036996 TGCTCATGTGATTTAACAAGTTTGA 57.963 32.000 0.00 0.00 32.81 2.69
1484 1492 7.660112 TGCTCATGTGATTTAACAAGTTTGAT 58.340 30.769 0.00 0.00 32.81 2.57
1485 1493 8.791675 TGCTCATGTGATTTAACAAGTTTGATA 58.208 29.630 0.00 0.00 32.81 2.15
1599 1607 4.012374 TGCCCTGATCAAGAATGAACTTC 58.988 43.478 0.00 0.00 39.49 3.01
1887 1895 2.112297 GTGGCAAAGGTCCGGTCA 59.888 61.111 0.00 0.00 0.00 4.02
2104 2112 8.311109 AGGTGTTATTTTACTTGCCTAAAATGG 58.689 33.333 11.41 0.00 37.07 3.16
2340 2356 6.545298 AGCATTGCCTTTTTATGTTGGAAAAA 59.455 30.769 4.70 0.00 35.18 1.94
2501 2518 8.884124 TTTTTCTGGACTGATTCTAATGGAAT 57.116 30.769 0.00 0.00 46.24 3.01
2685 2702 8.456471 TCATTTCAACTTTCTTCATGCTGATAG 58.544 33.333 0.00 0.00 0.00 2.08
2820 2838 3.204526 CTCATGTGAAGATGGGAAGCTC 58.795 50.000 0.00 0.00 0.00 4.09
2845 2863 7.885922 TCAAACCAATATTCCTGCAGTTACTTA 59.114 33.333 13.81 0.00 0.00 2.24
2994 3012 9.758651 ACTTGCATGTCATAACTATTATTACGA 57.241 29.630 0.00 0.00 0.00 3.43
2996 3014 9.974980 TTGCATGTCATAACTATTATTACGAGA 57.025 29.630 0.00 0.00 0.00 4.04
3017 3035 9.449719 ACGAGATACTTCCATTTTGTTAGATTT 57.550 29.630 0.00 0.00 0.00 2.17
3024 3042 9.492973 ACTTCCATTTTGTTAGATTTTGGATTG 57.507 29.630 0.00 0.00 32.23 2.67
3025 3043 9.492973 CTTCCATTTTGTTAGATTTTGGATTGT 57.507 29.630 0.00 0.00 32.23 2.71
3026 3044 9.487790 TTCCATTTTGTTAGATTTTGGATTGTC 57.512 29.630 0.00 0.00 32.23 3.18
3027 3045 7.812191 TCCATTTTGTTAGATTTTGGATTGTCG 59.188 33.333 0.00 0.00 0.00 4.35
3028 3046 7.598493 CCATTTTGTTAGATTTTGGATTGTCGT 59.402 33.333 0.00 0.00 0.00 4.34
3029 3047 9.619316 CATTTTGTTAGATTTTGGATTGTCGTA 57.381 29.630 0.00 0.00 0.00 3.43
3031 3049 9.619316 TTTTGTTAGATTTTGGATTGTCGTATG 57.381 29.630 0.00 0.00 0.00 2.39
3032 3050 8.554835 TTGTTAGATTTTGGATTGTCGTATGA 57.445 30.769 0.00 0.00 0.00 2.15
3033 3051 8.731275 TGTTAGATTTTGGATTGTCGTATGAT 57.269 30.769 0.00 0.00 0.00 2.45
3232 3308 5.478332 AGTTCATTTGATCCCTGAAAAGGAC 59.522 40.000 3.98 0.00 35.85 3.85
3278 3354 2.305635 TGTGGATGCACCTGTTCATACT 59.694 45.455 15.34 0.00 39.86 2.12
3289 3365 6.756542 GCACCTGTTCATACTTTTGAGTTTTT 59.243 34.615 0.00 0.00 0.00 1.94
3517 3593 2.420687 GGTGAGGCTAATCAAGGACCAG 60.421 54.545 0.00 0.00 0.00 4.00
3519 3595 2.237143 TGAGGCTAATCAAGGACCAGTG 59.763 50.000 0.00 0.00 0.00 3.66
3520 3596 2.237392 GAGGCTAATCAAGGACCAGTGT 59.763 50.000 0.00 0.00 0.00 3.55
3521 3597 2.237392 AGGCTAATCAAGGACCAGTGTC 59.763 50.000 0.00 0.00 40.98 3.67
3522 3598 2.237392 GGCTAATCAAGGACCAGTGTCT 59.763 50.000 0.00 0.00 41.47 3.41
3523 3599 3.526534 GCTAATCAAGGACCAGTGTCTC 58.473 50.000 0.00 0.00 41.47 3.36
3524 3600 3.680196 GCTAATCAAGGACCAGTGTCTCC 60.680 52.174 0.00 0.00 41.47 3.71
3525 3601 2.030027 ATCAAGGACCAGTGTCTCCA 57.970 50.000 6.81 0.00 41.47 3.86
3526 3602 1.801242 TCAAGGACCAGTGTCTCCAA 58.199 50.000 6.81 0.00 41.47 3.53
3527 3603 2.123589 TCAAGGACCAGTGTCTCCAAA 58.876 47.619 6.81 0.00 41.47 3.28
3528 3604 2.507886 TCAAGGACCAGTGTCTCCAAAA 59.492 45.455 6.81 0.00 41.47 2.44
3529 3605 2.880890 CAAGGACCAGTGTCTCCAAAAG 59.119 50.000 6.81 0.00 41.47 2.27
3530 3606 1.421646 AGGACCAGTGTCTCCAAAAGG 59.578 52.381 6.81 0.00 41.47 3.11
3531 3607 1.420138 GGACCAGTGTCTCCAAAAGGA 59.580 52.381 0.11 0.00 41.47 3.36
3532 3608 2.495084 GACCAGTGTCTCCAAAAGGAC 58.505 52.381 0.00 0.00 38.53 3.85
3533 3609 1.143073 ACCAGTGTCTCCAAAAGGACC 59.857 52.381 0.00 0.00 0.00 4.46
3591 3721 0.817634 CGTCACCAAAAGGACCAGCA 60.818 55.000 0.00 0.00 0.00 4.41
3661 3791 7.927048 TGATCAGTTGAAATCTGCTAATGATG 58.073 34.615 0.00 0.00 33.48 3.07
3662 3792 7.771826 TGATCAGTTGAAATCTGCTAATGATGA 59.228 33.333 0.00 0.00 33.48 2.92
3663 3793 7.926674 TCAGTTGAAATCTGCTAATGATGAA 57.073 32.000 0.00 0.00 33.48 2.57
3704 3834 0.324091 AAGCCCAAGAAGCCATCTGG 60.324 55.000 0.00 0.00 38.79 3.86
3801 3931 6.341316 TGACAAAGAAGCTCATGTAGTATCC 58.659 40.000 0.00 0.00 0.00 2.59
3810 3940 4.038162 GCTCATGTAGTATCCGGAGAGTTT 59.962 45.833 12.49 0.00 0.00 2.66
4238 4368 3.444742 CAGTTCTTTGCCTGCATTATCCA 59.555 43.478 0.00 0.00 0.00 3.41
4465 4595 4.745125 GGCATGAGAAATCAGCAATTCATG 59.255 41.667 0.00 7.67 33.42 3.07
4619 4749 0.759060 AACCAAGGGTCAAAGTGGGC 60.759 55.000 0.00 0.00 33.12 5.36
4631 4761 4.458989 GTCAAAGTGGGCAGAATAATGTGA 59.541 41.667 0.00 0.00 0.00 3.58
4669 4799 7.545965 CGTGAACAAGATACTGAAGAGGTATTT 59.454 37.037 0.00 0.00 31.03 1.40
4699 4830 6.534475 AGTCACATGTGCAAATGGAATATT 57.466 33.333 21.38 0.00 31.46 1.28
4717 4848 7.888021 TGGAATATTATAATCCACCGCAATTCT 59.112 33.333 4.99 0.00 38.30 2.40
4955 5086 6.374417 TCTCCAATTGTAGAAGGCTTAGTT 57.626 37.500 0.00 0.00 0.00 2.24
4982 5113 9.617975 GTTGTTACTAGTACACTGTTAACCTAG 57.382 37.037 0.91 7.79 0.00 3.02
5060 5191 5.106712 ACAGTATGCCTTGTTATGTTGAACG 60.107 40.000 0.00 0.00 42.53 3.95
5277 5421 2.900716 TTTGCAGGTTTTACAAGGGC 57.099 45.000 0.00 0.00 0.00 5.19
5338 5482 5.710984 AGGTCAGTACACTGTTTTATCTCG 58.289 41.667 9.11 0.00 44.12 4.04
5366 5510 5.360714 CAGTGGCTATTTGGTTTACATGGAT 59.639 40.000 0.00 0.00 0.00 3.41
5390 5534 7.214467 TCACTAATGTTTGATTCAAAGTCCC 57.786 36.000 12.02 1.81 33.82 4.46
5391 5535 6.775142 TCACTAATGTTTGATTCAAAGTCCCA 59.225 34.615 12.02 7.25 33.82 4.37
5393 5537 7.756722 CACTAATGTTTGATTCAAAGTCCCATC 59.243 37.037 12.02 0.13 33.82 3.51
5394 5538 6.669125 AATGTTTGATTCAAAGTCCCATCA 57.331 33.333 12.02 5.60 33.82 3.07
5395 5539 5.452078 TGTTTGATTCAAAGTCCCATCAC 57.548 39.130 12.02 0.00 33.82 3.06
5607 5751 4.245660 GTTATTTTTGCAGGAAGAAGGCC 58.754 43.478 0.00 0.00 0.00 5.19
5636 5783 4.377897 CTGATGCATCTGAGATGTAAGCA 58.622 43.478 26.32 17.79 34.78 3.91
5673 5820 6.233905 TCATTCTTGTATACCTGCAGCTTA 57.766 37.500 8.66 1.55 0.00 3.09
5678 5825 5.642063 TCTTGTATACCTGCAGCTTACAAAC 59.358 40.000 23.14 11.32 33.70 2.93
5705 5852 5.525378 CCTGTCTAATTTGCCAGTAGCTAAG 59.475 44.000 0.00 0.00 44.23 2.18
5718 5865 5.530171 CCAGTAGCTAAGTTGATTCATGCAT 59.470 40.000 0.00 0.00 0.00 3.96
5719 5866 6.293298 CCAGTAGCTAAGTTGATTCATGCATC 60.293 42.308 0.00 0.00 0.00 3.91
5720 5867 6.259387 CAGTAGCTAAGTTGATTCATGCATCA 59.741 38.462 3.74 3.74 0.00 3.07
5809 5956 4.630069 GTCACTATTGTAGGCGTTGATGTT 59.370 41.667 0.00 0.00 0.00 2.71
5810 5957 4.629634 TCACTATTGTAGGCGTTGATGTTG 59.370 41.667 0.00 0.00 0.00 3.33
5896 6045 8.892723 TGGTGCAAGTTCTTATATTCACTTATG 58.107 33.333 0.00 0.00 0.00 1.90
6154 6304 2.154462 CCACAAACCTAGCTCACCTTG 58.846 52.381 0.00 0.00 0.00 3.61
6155 6305 2.487265 CCACAAACCTAGCTCACCTTGT 60.487 50.000 0.00 0.00 0.00 3.16
6158 6308 4.452455 CACAAACCTAGCTCACCTTGTTAG 59.548 45.833 0.00 0.00 0.00 2.34
6159 6309 4.102681 ACAAACCTAGCTCACCTTGTTAGT 59.897 41.667 0.00 0.00 0.00 2.24
6160 6310 4.976540 AACCTAGCTCACCTTGTTAGTT 57.023 40.909 0.00 0.00 0.00 2.24
6161 6311 6.183361 ACAAACCTAGCTCACCTTGTTAGTTA 60.183 38.462 0.00 0.00 0.00 2.24
6162 6312 6.622427 AACCTAGCTCACCTTGTTAGTTAT 57.378 37.500 0.00 0.00 0.00 1.89
6163 6313 6.622427 ACCTAGCTCACCTTGTTAGTTATT 57.378 37.500 0.00 0.00 0.00 1.40
6164 6314 7.729124 ACCTAGCTCACCTTGTTAGTTATTA 57.271 36.000 0.00 0.00 0.00 0.98
6165 6315 7.554211 ACCTAGCTCACCTTGTTAGTTATTAC 58.446 38.462 0.00 0.00 0.00 1.89
6166 6316 7.399478 ACCTAGCTCACCTTGTTAGTTATTACT 59.601 37.037 0.00 0.00 38.44 2.24
6394 6549 5.431765 AGTAATGGACACATAGAAGCCTTG 58.568 41.667 0.00 0.00 35.94 3.61
6422 6577 4.342378 TGAGACTTGTTTGTGTAGAGCTCT 59.658 41.667 22.17 22.17 0.00 4.09
6424 6579 5.675538 AGACTTGTTTGTGTAGAGCTCTTT 58.324 37.500 23.84 0.03 0.00 2.52
6455 6610 2.885135 TTTCTCATGGTGGCAGTGAT 57.115 45.000 0.00 0.00 0.00 3.06
6591 6746 0.111639 GGGGACACCTAAAAGTGCCA 59.888 55.000 5.50 0.00 46.74 4.92
6592 6747 1.534729 GGGACACCTAAAAGTGCCAG 58.465 55.000 0.00 0.00 44.61 4.85
6593 6748 0.881796 GGACACCTAAAAGTGCCAGC 59.118 55.000 0.00 0.00 41.67 4.85
6681 6836 0.250640 AGACAGCAGCAACCAGAAGG 60.251 55.000 0.00 0.00 42.21 3.46
6733 6888 0.178903 TCTGTGAAGGGTAGGCCTGT 60.179 55.000 17.99 0.00 34.45 4.00
6761 6916 0.387239 CAAAAAGCGCTGCCACTACC 60.387 55.000 12.58 0.00 0.00 3.18
6833 6988 1.578897 AGGAGGAGAAAGAAGAGGCC 58.421 55.000 0.00 0.00 0.00 5.19
6996 7155 4.938832 CCGTTGTATGGATTGTAAACTCCA 59.061 41.667 0.00 0.00 45.27 3.86
7259 7427 4.547532 GCTATATTTGGTCATCGACTCGT 58.452 43.478 0.00 0.00 32.47 4.18
7260 7428 4.982916 GCTATATTTGGTCATCGACTCGTT 59.017 41.667 0.00 0.00 32.47 3.85
7290 7458 2.039216 TGGCAGATGTTCCCGTTTCTTA 59.961 45.455 0.00 0.00 0.00 2.10
7294 7462 4.271291 GCAGATGTTCCCGTTTCTTATCTC 59.729 45.833 0.00 0.00 0.00 2.75
7331 7504 1.906105 TATGCAGGGTTGACCGTCCC 61.906 60.000 0.00 0.00 46.96 4.46
7398 7595 7.952671 TCATCAGTGGTACTCCTATGTTTATC 58.047 38.462 0.00 0.00 34.23 1.75
7402 7599 6.986817 CAGTGGTACTCCTATGTTTATCCTTG 59.013 42.308 0.00 0.00 34.23 3.61
7611 7808 1.336755 ACAACGTGATTCAACAAGGCC 59.663 47.619 0.00 0.00 0.00 5.19
7612 7809 1.608590 CAACGTGATTCAACAAGGCCT 59.391 47.619 0.00 0.00 0.00 5.19
7658 7861 1.376424 CTCCTGCGCACCTGTCAAT 60.376 57.895 5.66 0.00 0.00 2.57
7705 7908 2.253610 TCCTCGTGTACCCAGTCAATT 58.746 47.619 0.00 0.00 0.00 2.32
7728 7931 9.517609 AATTTACAAGCGATGAAGTAGTACTAG 57.482 33.333 1.87 0.00 0.00 2.57
7768 7971 1.006571 TTCTCACGTGACTTCCGGC 60.007 57.895 15.76 0.00 0.00 6.13
7802 8005 5.449041 CCACCATCGAAACATATCCAAAGTG 60.449 44.000 0.00 0.00 0.00 3.16
7826 8029 1.668419 AGTGGTCAACTCACACTTGC 58.332 50.000 0.00 0.00 42.38 4.01
7854 8057 4.750098 GGTAACTGTAACATCATCCCATCG 59.250 45.833 0.00 0.00 0.00 3.84
7855 8058 2.838736 ACTGTAACATCATCCCATCGC 58.161 47.619 0.00 0.00 0.00 4.58
7856 8059 2.435805 ACTGTAACATCATCCCATCGCT 59.564 45.455 0.00 0.00 0.00 4.93
7857 8060 3.118261 ACTGTAACATCATCCCATCGCTT 60.118 43.478 0.00 0.00 0.00 4.68
7858 8061 3.879295 CTGTAACATCATCCCATCGCTTT 59.121 43.478 0.00 0.00 0.00 3.51
7859 8062 3.876914 TGTAACATCATCCCATCGCTTTC 59.123 43.478 0.00 0.00 0.00 2.62
7860 8063 1.972872 ACATCATCCCATCGCTTTCC 58.027 50.000 0.00 0.00 0.00 3.13
7861 8064 1.212688 ACATCATCCCATCGCTTTCCA 59.787 47.619 0.00 0.00 0.00 3.53
7862 8065 2.158564 ACATCATCCCATCGCTTTCCAT 60.159 45.455 0.00 0.00 0.00 3.41
7863 8066 2.734755 TCATCCCATCGCTTTCCATT 57.265 45.000 0.00 0.00 0.00 3.16
7864 8067 2.300433 TCATCCCATCGCTTTCCATTG 58.700 47.619 0.00 0.00 0.00 2.82
7865 8068 1.338973 CATCCCATCGCTTTCCATTGG 59.661 52.381 0.00 0.00 0.00 3.16
7866 8069 0.331278 TCCCATCGCTTTCCATTGGT 59.669 50.000 1.86 0.00 0.00 3.67
7867 8070 0.740737 CCCATCGCTTTCCATTGGTC 59.259 55.000 1.86 0.00 0.00 4.02
7868 8071 1.462616 CCATCGCTTTCCATTGGTCA 58.537 50.000 1.86 0.00 0.00 4.02
7869 8072 1.133025 CCATCGCTTTCCATTGGTCAC 59.867 52.381 1.86 0.00 0.00 3.67
7870 8073 1.133025 CATCGCTTTCCATTGGTCACC 59.867 52.381 1.86 0.00 0.00 4.02
7871 8074 0.109532 TCGCTTTCCATTGGTCACCA 59.890 50.000 0.00 0.00 0.00 4.17
7890 8093 3.469899 CAAGAATTTGGAACGCATCGA 57.530 42.857 0.00 0.00 0.00 3.59
7891 8094 3.419915 CAAGAATTTGGAACGCATCGAG 58.580 45.455 0.00 0.00 0.00 4.04
7892 8095 2.009774 AGAATTTGGAACGCATCGAGG 58.990 47.619 0.00 0.00 0.00 4.63
7893 8096 1.064060 GAATTTGGAACGCATCGAGGG 59.936 52.381 0.00 0.00 0.00 4.30
7894 8097 0.035439 ATTTGGAACGCATCGAGGGT 60.035 50.000 0.00 0.00 46.58 4.34
7899 8102 2.347490 ACGCATCGAGGGTTGCTT 59.653 55.556 7.11 0.00 41.09 3.91
7900 8103 2.034879 ACGCATCGAGGGTTGCTTG 61.035 57.895 7.11 0.00 41.09 4.01
7901 8104 2.486966 GCATCGAGGGTTGCTTGC 59.513 61.111 0.00 0.00 36.24 4.01
7902 8105 2.334946 GCATCGAGGGTTGCTTGCA 61.335 57.895 0.00 0.00 36.24 4.08
7903 8106 1.798735 CATCGAGGGTTGCTTGCAG 59.201 57.895 0.00 0.00 0.00 4.41
7904 8107 0.957395 CATCGAGGGTTGCTTGCAGT 60.957 55.000 0.00 0.00 0.00 4.40
7905 8108 0.613260 ATCGAGGGTTGCTTGCAGTA 59.387 50.000 0.00 0.00 0.00 2.74
7906 8109 0.037326 TCGAGGGTTGCTTGCAGTAG 60.037 55.000 0.00 0.00 0.00 2.57
7907 8110 0.320771 CGAGGGTTGCTTGCAGTAGT 60.321 55.000 0.00 0.00 0.00 2.73
7908 8111 1.878102 CGAGGGTTGCTTGCAGTAGTT 60.878 52.381 0.00 0.00 0.00 2.24
7909 8112 2.230660 GAGGGTTGCTTGCAGTAGTTT 58.769 47.619 0.00 0.00 0.00 2.66
7910 8113 2.226674 GAGGGTTGCTTGCAGTAGTTTC 59.773 50.000 0.00 0.00 0.00 2.78
7911 8114 1.953686 GGGTTGCTTGCAGTAGTTTCA 59.046 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.646189 GAGAAGGATTGTGGCGAGAC 58.354 55.000 0.00 0.00 0.00 3.36
109 111 2.435586 GCATCACAGTGGCGCTCT 60.436 61.111 7.64 3.26 0.00 4.09
177 179 0.631212 AAACCAGAGGGGGCATAAGG 59.369 55.000 0.00 0.00 42.91 2.69
188 191 5.337578 TGTTTTTCTTTCCCAAACCAGAG 57.662 39.130 0.00 0.00 30.64 3.35
189 192 5.948742 ATGTTTTTCTTTCCCAAACCAGA 57.051 34.783 0.00 0.00 30.64 3.86
190 193 7.389803 AAAATGTTTTTCTTTCCCAAACCAG 57.610 32.000 0.00 0.00 30.64 4.00
251 254 2.484742 ATTTCCGCTAGGTTTTCGGT 57.515 45.000 5.77 0.00 43.35 4.69
401 404 5.114780 CACACCAAACCATCAATCAACAAA 58.885 37.500 0.00 0.00 0.00 2.83
1289 1297 4.213270 CGCTCTACCAATGACTGAAAACAA 59.787 41.667 0.00 0.00 0.00 2.83
1357 1365 6.128254 GGAAGCTAACACCTCTATCAAACAAC 60.128 42.308 0.00 0.00 0.00 3.32
1363 1371 5.023452 TCAAGGAAGCTAACACCTCTATCA 58.977 41.667 0.00 0.00 33.16 2.15
1404 1412 2.301870 ACTCGGCAGTTACTCCAATTCA 59.698 45.455 0.00 0.00 0.00 2.57
1481 1489 8.531146 TCGACATCCTGCATATAGAAAATATCA 58.469 33.333 0.00 0.00 0.00 2.15
1482 1490 8.932945 TCGACATCCTGCATATAGAAAATATC 57.067 34.615 0.00 0.00 0.00 1.63
1483 1491 8.753133 TCTCGACATCCTGCATATAGAAAATAT 58.247 33.333 0.00 0.00 0.00 1.28
1484 1492 8.122472 TCTCGACATCCTGCATATAGAAAATA 57.878 34.615 0.00 0.00 0.00 1.40
1485 1493 6.997655 TCTCGACATCCTGCATATAGAAAAT 58.002 36.000 0.00 0.00 0.00 1.82
1502 1510 6.325596 CACTCTCAACAGATATTTCTCGACA 58.674 40.000 0.00 0.00 0.00 4.35
1599 1607 1.153823 CGGCGTTAGGGTGAGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
2144 2159 3.446161 TGTACAGGACAGGTACAGCATAC 59.554 47.826 0.00 0.00 44.39 2.39
2340 2356 0.396695 CAGGAAGGGGAATGCAGCAT 60.397 55.000 0.52 0.52 0.00 3.79
2432 2448 3.978373 CGTCTCACGTACCATCGC 58.022 61.111 0.00 0.00 36.74 4.58
2501 2518 5.888724 TGAACACAGGATGACAAAAGGTAAA 59.111 36.000 0.00 0.00 39.69 2.01
2685 2702 3.068165 GCTTGGGCAAGGTAAATCCATAC 59.932 47.826 0.00 0.00 38.80 2.39
2820 2838 6.515272 AGTAACTGCAGGAATATTGGTTTG 57.485 37.500 19.93 0.00 0.00 2.93
2845 2863 2.310538 CAAGGGAGTGCCTTGAACTTT 58.689 47.619 33.49 0.00 45.09 2.66
2991 3009 9.449719 AAATCTAACAAAATGGAAGTATCTCGT 57.550 29.630 0.00 0.00 0.00 4.18
2998 3016 9.492973 CAATCCAAAATCTAACAAAATGGAAGT 57.507 29.630 0.00 0.00 38.82 3.01
2999 3017 9.492973 ACAATCCAAAATCTAACAAAATGGAAG 57.507 29.630 0.00 0.00 38.82 3.46
3000 3018 9.487790 GACAATCCAAAATCTAACAAAATGGAA 57.512 29.630 0.00 0.00 38.82 3.53
3001 3019 7.812191 CGACAATCCAAAATCTAACAAAATGGA 59.188 33.333 0.00 0.00 39.59 3.41
3002 3020 7.598493 ACGACAATCCAAAATCTAACAAAATGG 59.402 33.333 0.00 0.00 0.00 3.16
3003 3021 8.519492 ACGACAATCCAAAATCTAACAAAATG 57.481 30.769 0.00 0.00 0.00 2.32
3005 3023 9.619316 CATACGACAATCCAAAATCTAACAAAA 57.381 29.630 0.00 0.00 0.00 2.44
3006 3024 9.004717 TCATACGACAATCCAAAATCTAACAAA 57.995 29.630 0.00 0.00 0.00 2.83
3007 3025 8.554835 TCATACGACAATCCAAAATCTAACAA 57.445 30.769 0.00 0.00 0.00 2.83
3008 3026 8.731275 ATCATACGACAATCCAAAATCTAACA 57.269 30.769 0.00 0.00 0.00 2.41
3016 3034 8.931775 CCGATAATAATCATACGACAATCCAAA 58.068 33.333 0.00 0.00 31.93 3.28
3017 3035 8.092068 ACCGATAATAATCATACGACAATCCAA 58.908 33.333 0.00 0.00 31.93 3.53
3018 3036 7.544217 CACCGATAATAATCATACGACAATCCA 59.456 37.037 0.00 0.00 31.93 3.41
3019 3037 7.544566 ACACCGATAATAATCATACGACAATCC 59.455 37.037 0.00 0.00 31.93 3.01
3020 3038 8.462143 ACACCGATAATAATCATACGACAATC 57.538 34.615 0.00 0.00 31.93 2.67
3021 3039 9.917129 TTACACCGATAATAATCATACGACAAT 57.083 29.630 0.00 0.00 31.93 2.71
3022 3040 9.747293 TTTACACCGATAATAATCATACGACAA 57.253 29.630 0.00 0.00 31.93 3.18
3023 3041 9.917129 ATTTACACCGATAATAATCATACGACA 57.083 29.630 0.00 0.00 31.93 4.35
3031 3049 9.708222 GCATGATGATTTACACCGATAATAATC 57.292 33.333 0.00 0.00 0.00 1.75
3032 3050 9.453572 AGCATGATGATTTACACCGATAATAAT 57.546 29.630 0.00 0.00 0.00 1.28
3033 3051 8.846943 AGCATGATGATTTACACCGATAATAA 57.153 30.769 0.00 0.00 0.00 1.40
3097 3173 7.667635 TCTCAGTCTATTCAAGAGAACTGAGAA 59.332 37.037 25.78 16.75 44.35 2.87
3232 3308 5.581126 AACACCATACAGCCAACATATTG 57.419 39.130 0.00 0.00 35.40 1.90
3278 3354 7.411486 TCCACCTGAATGTAAAAACTCAAAA 57.589 32.000 0.00 0.00 0.00 2.44
3289 3365 2.509131 TGCCATCATCCACCTGAATGTA 59.491 45.455 0.00 0.00 0.00 2.29
3523 3599 0.955919 GGAGACGCTGGTCCTTTTGG 60.956 60.000 0.00 0.00 44.54 3.28
3524 3600 0.250295 TGGAGACGCTGGTCCTTTTG 60.250 55.000 0.00 0.00 44.54 2.44
3525 3601 0.472471 TTGGAGACGCTGGTCCTTTT 59.528 50.000 0.00 0.00 44.54 2.27
3526 3602 0.472471 TTTGGAGACGCTGGTCCTTT 59.528 50.000 0.00 0.00 44.54 3.11
3527 3603 0.472471 TTTTGGAGACGCTGGTCCTT 59.528 50.000 0.00 0.00 44.54 3.36
3528 3604 0.035458 CTTTTGGAGACGCTGGTCCT 59.965 55.000 0.00 0.00 44.54 3.85
3529 3605 0.955919 CCTTTTGGAGACGCTGGTCC 60.956 60.000 0.00 0.00 44.54 4.46
3530 3606 0.034896 TCCTTTTGGAGACGCTGGTC 59.965 55.000 0.00 0.00 45.19 4.02
3531 3607 2.142220 TCCTTTTGGAGACGCTGGT 58.858 52.632 0.00 0.00 45.19 4.00
3591 3721 3.795688 TCAGGCTTCTCTTTTGGTGAT 57.204 42.857 0.00 0.00 0.00 3.06
3704 3834 5.300752 TCAGGTCTTTGTCTGAATCAAGAC 58.699 41.667 12.93 12.93 45.70 3.01
3801 3931 2.154854 TGTCTGCAGAAAACTCTCCG 57.845 50.000 20.19 0.00 0.00 4.63
3810 3940 3.641436 TGACTACCTTCTTGTCTGCAGAA 59.359 43.478 20.19 2.35 0.00 3.02
4378 4508 1.497278 CAGCCATTGAACCACGACG 59.503 57.895 0.00 0.00 0.00 5.12
4381 4511 1.401552 CATACCAGCCATTGAACCACG 59.598 52.381 0.00 0.00 0.00 4.94
4465 4595 6.635030 ACTAAATTCAAGTTGAAGGGTCAC 57.365 37.500 22.03 0.00 40.05 3.67
4539 4669 7.360269 CCATTTCCTGTATTGCAATGAAACAAC 60.360 37.037 22.27 11.17 33.56 3.32
4619 4749 6.292757 CGCTTCCTCTTCATCACATTATTCTG 60.293 42.308 0.00 0.00 0.00 3.02
4631 4761 2.839486 TGTTCACGCTTCCTCTTCAT 57.161 45.000 0.00 0.00 0.00 2.57
4669 4799 6.883756 TCCATTTGCACATGTGACTAAGAATA 59.116 34.615 29.80 6.31 0.00 1.75
4699 4830 9.214957 CTGTATTTAGAATTGCGGTGGATTATA 57.785 33.333 0.00 0.00 0.00 0.98
4751 4882 8.500773 CAAGAGCGTAAAAGGTTTAAGTATCAA 58.499 33.333 0.00 0.00 0.00 2.57
4955 5086 8.010733 AGGTTAACAGTGTACTAGTAACAACA 57.989 34.615 3.61 0.00 31.33 3.33
5127 5260 6.703165 GCAAACAGACTTTCCAAAATCTGAAT 59.297 34.615 15.52 3.51 40.92 2.57
5277 5421 4.454161 TGGGTATCAAATGAGTCAACAACG 59.546 41.667 0.00 0.00 0.00 4.10
5338 5482 0.890683 AACCAAATAGCCACTGCAGC 59.109 50.000 15.27 0.00 41.13 5.25
5366 5510 6.775142 TGGGACTTTGAATCAAACATTAGTGA 59.225 34.615 4.03 0.00 0.00 3.41
5374 5518 5.241506 TGAGTGATGGGACTTTGAATCAAAC 59.758 40.000 4.03 0.00 31.20 2.93
5607 5751 3.870274 TCTCAGATGCATCAGGAGTTTG 58.130 45.455 31.02 19.91 34.29 2.93
5673 5820 3.005791 GGCAAATTAGACAGGCAGTTTGT 59.994 43.478 0.00 0.00 0.00 2.83
5705 5852 9.177304 CAATACAATAGTGATGCATGAATCAAC 57.823 33.333 18.35 12.11 38.28 3.18
5809 5956 6.426025 GCATATGAGCAGTATTCTCAACATCA 59.574 38.462 6.97 0.00 42.75 3.07
5810 5957 6.426025 TGCATATGAGCAGTATTCTCAACATC 59.574 38.462 6.97 0.00 42.75 3.06
5861 6010 3.454573 CTTGCACCATGCCCGCAT 61.455 61.111 0.00 0.00 44.23 4.73
5862 6011 4.972733 ACTTGCACCATGCCCGCA 62.973 61.111 0.00 0.00 44.23 5.69
5896 6045 4.202030 CGATAGACAGGAACCAGGTTCTAC 60.202 50.000 28.14 14.98 39.63 2.59
5906 6055 5.752892 TGATAGACACGATAGACAGGAAC 57.247 43.478 0.00 0.00 41.38 3.62
6154 6304 3.626217 GCCACTGGCCAGTAATAACTAAC 59.374 47.826 37.27 14.76 44.06 2.34
6155 6305 3.881220 GCCACTGGCCAGTAATAACTAA 58.119 45.455 37.27 0.00 44.06 2.24
6300 6450 0.401738 CCTCTCCCTTTTCTGCCACA 59.598 55.000 0.00 0.00 0.00 4.17
6394 6549 6.510317 GCTCTACACAAACAAGTCTCAGAAAC 60.510 42.308 0.00 0.00 0.00 2.78
6434 6589 3.159213 TCACTGCCACCATGAGAAAAT 57.841 42.857 0.00 0.00 0.00 1.82
6524 6679 4.443315 CCCTTTGATTTGCTTGGAGTTGTT 60.443 41.667 0.00 0.00 0.00 2.83
6586 6741 3.262420 TCTTTCTTAATCTCGCTGGCAC 58.738 45.455 0.00 0.00 0.00 5.01
6591 6746 4.207891 TGCCTTCTTTCTTAATCTCGCT 57.792 40.909 0.00 0.00 0.00 4.93
6592 6747 4.201861 CCTTGCCTTCTTTCTTAATCTCGC 60.202 45.833 0.00 0.00 0.00 5.03
6593 6748 5.178797 TCCTTGCCTTCTTTCTTAATCTCG 58.821 41.667 0.00 0.00 0.00 4.04
6681 6836 0.110486 TTGCTCCCAACCTCCTTCAC 59.890 55.000 0.00 0.00 0.00 3.18
6733 6888 1.590259 GCGCTTTTTGGTTTCCGCA 60.590 52.632 0.00 0.00 40.94 5.69
6761 6916 2.185350 CTAGCCGCCACTGGAGTG 59.815 66.667 0.00 0.00 45.23 3.51
6775 6930 2.625314 TGAACAGATCCAGATCCGCTAG 59.375 50.000 4.01 0.00 38.58 3.42
6779 6934 3.382865 TCTCTTGAACAGATCCAGATCCG 59.617 47.826 4.01 0.00 38.58 4.18
6833 6988 0.942962 GCTCCATTTCAGATGCCTCG 59.057 55.000 0.00 0.00 0.00 4.63
6996 7155 3.469739 AGGTAAAAACAACGACGACCAT 58.530 40.909 0.00 0.00 0.00 3.55
7054 7214 2.743938 ACAGACACAGACAATGACGAC 58.256 47.619 0.00 0.00 0.00 4.34
7279 7447 5.535406 GGATAGACAGAGATAAGAAACGGGA 59.465 44.000 0.00 0.00 0.00 5.14
7282 7450 7.976734 ACAAAGGATAGACAGAGATAAGAAACG 59.023 37.037 0.00 0.00 0.00 3.60
7290 7458 7.495901 CATACACACAAAGGATAGACAGAGAT 58.504 38.462 0.00 0.00 0.00 2.75
7294 7462 5.178061 TGCATACACACAAAGGATAGACAG 58.822 41.667 0.00 0.00 0.00 3.51
7331 7504 2.355363 TTCGTTGTGCTCCGGTCG 60.355 61.111 0.00 0.00 0.00 4.79
7398 7595 4.630111 TGCAAAACATAAGAAAGGCAAGG 58.370 39.130 0.00 0.00 0.00 3.61
7402 7599 3.429881 GCACTGCAAAACATAAGAAAGGC 59.570 43.478 0.00 0.00 0.00 4.35
7477 7674 4.405116 AGAGAGATAGGCAGCAAAGAAG 57.595 45.455 0.00 0.00 0.00 2.85
7611 7808 0.615331 TACTTGCAAGGCAGGAGGAG 59.385 55.000 29.18 2.09 40.61 3.69
7612 7809 1.065199 CATACTTGCAAGGCAGGAGGA 60.065 52.381 29.18 0.00 40.61 3.71
7705 7908 7.621428 ACTAGTACTACTTCATCGCTTGTAA 57.379 36.000 0.00 0.00 0.00 2.41
7728 7931 4.459330 AGGGACGACCAAGTCTATAGTAC 58.541 47.826 6.20 0.00 43.89 2.73
7768 7971 4.023279 TGTTTCGATGGTGGAATTGTTGAG 60.023 41.667 0.00 0.00 0.00 3.02
7802 8005 2.135933 GTGTGAGTTGACCACTAGTGC 58.864 52.381 17.86 5.45 35.01 4.40
7826 8029 6.432783 TGGGATGATGTTACAGTTACCTTTTG 59.567 38.462 0.00 0.00 0.00 2.44
7839 8042 3.118075 TGGAAAGCGATGGGATGATGTTA 60.118 43.478 0.00 0.00 0.00 2.41
7840 8043 2.301346 GGAAAGCGATGGGATGATGTT 58.699 47.619 0.00 0.00 0.00 2.71
7841 8044 1.212688 TGGAAAGCGATGGGATGATGT 59.787 47.619 0.00 0.00 0.00 3.06
7842 8045 1.971481 TGGAAAGCGATGGGATGATG 58.029 50.000 0.00 0.00 0.00 3.07
7843 8046 2.889045 CAATGGAAAGCGATGGGATGAT 59.111 45.455 0.00 0.00 0.00 2.45
7844 8047 2.300433 CAATGGAAAGCGATGGGATGA 58.700 47.619 0.00 0.00 0.00 2.92
7845 8048 1.338973 CCAATGGAAAGCGATGGGATG 59.661 52.381 0.00 0.00 0.00 3.51
7846 8049 1.063717 ACCAATGGAAAGCGATGGGAT 60.064 47.619 6.16 0.00 28.62 3.85
7847 8050 0.331278 ACCAATGGAAAGCGATGGGA 59.669 50.000 6.16 0.00 28.62 4.37
7848 8051 0.740737 GACCAATGGAAAGCGATGGG 59.259 55.000 6.16 0.00 30.10 4.00
7849 8052 1.133025 GTGACCAATGGAAAGCGATGG 59.867 52.381 6.16 0.00 0.00 3.51
7850 8053 1.133025 GGTGACCAATGGAAAGCGATG 59.867 52.381 6.16 0.00 0.00 3.84
7851 8054 1.271871 TGGTGACCAATGGAAAGCGAT 60.272 47.619 6.16 0.00 0.00 4.58
7852 8055 0.109532 TGGTGACCAATGGAAAGCGA 59.890 50.000 6.16 0.00 0.00 4.93
7853 8056 0.958091 TTGGTGACCAATGGAAAGCG 59.042 50.000 14.05 0.00 38.75 4.68
7854 8057 2.238521 TCTTGGTGACCAATGGAAAGC 58.761 47.619 18.64 3.65 43.07 3.51
7855 8058 5.473066 AATTCTTGGTGACCAATGGAAAG 57.527 39.130 18.64 4.85 43.07 2.62
7856 8059 5.454471 CCAAATTCTTGGTGACCAATGGAAA 60.454 40.000 23.19 13.74 46.25 3.13
7857 8060 4.040217 CCAAATTCTTGGTGACCAATGGAA 59.960 41.667 23.19 20.46 46.25 3.53
7858 8061 3.577848 CCAAATTCTTGGTGACCAATGGA 59.422 43.478 23.19 13.82 46.25 3.41
7859 8062 3.929094 CCAAATTCTTGGTGACCAATGG 58.071 45.455 18.64 17.60 46.25 3.16
7870 8073 3.419915 CTCGATGCGTTCCAAATTCTTG 58.580 45.455 0.00 0.00 0.00 3.02
7871 8074 2.420022 CCTCGATGCGTTCCAAATTCTT 59.580 45.455 0.00 0.00 0.00 2.52
7872 8075 2.009774 CCTCGATGCGTTCCAAATTCT 58.990 47.619 0.00 0.00 0.00 2.40
7873 8076 1.064060 CCCTCGATGCGTTCCAAATTC 59.936 52.381 0.00 0.00 0.00 2.17
7874 8077 1.094785 CCCTCGATGCGTTCCAAATT 58.905 50.000 0.00 0.00 0.00 1.82
7875 8078 0.035439 ACCCTCGATGCGTTCCAAAT 60.035 50.000 0.00 0.00 0.00 2.32
7876 8079 0.250553 AACCCTCGATGCGTTCCAAA 60.251 50.000 0.00 0.00 0.00 3.28
7877 8080 0.953471 CAACCCTCGATGCGTTCCAA 60.953 55.000 0.00 0.00 0.00 3.53
7878 8081 1.375396 CAACCCTCGATGCGTTCCA 60.375 57.895 0.00 0.00 0.00 3.53
7879 8082 2.750888 GCAACCCTCGATGCGTTCC 61.751 63.158 0.00 0.00 32.17 3.62
7880 8083 1.298859 AAGCAACCCTCGATGCGTTC 61.299 55.000 3.24 0.00 46.98 3.95
7881 8084 1.302511 AAGCAACCCTCGATGCGTT 60.303 52.632 3.24 0.00 46.98 4.84
7882 8085 2.034879 CAAGCAACCCTCGATGCGT 61.035 57.895 3.24 0.00 46.98 5.24
7883 8086 2.787249 CAAGCAACCCTCGATGCG 59.213 61.111 3.24 0.00 46.98 4.73
7884 8087 2.262471 CTGCAAGCAACCCTCGATGC 62.262 60.000 0.37 0.37 42.87 3.91
7885 8088 0.957395 ACTGCAAGCAACCCTCGATG 60.957 55.000 0.00 0.00 37.60 3.84
7886 8089 0.613260 TACTGCAAGCAACCCTCGAT 59.387 50.000 0.00 0.00 37.60 3.59
7887 8090 0.037326 CTACTGCAAGCAACCCTCGA 60.037 55.000 0.00 0.00 37.60 4.04
7888 8091 0.320771 ACTACTGCAAGCAACCCTCG 60.321 55.000 0.00 0.00 37.60 4.63
7889 8092 1.897560 AACTACTGCAAGCAACCCTC 58.102 50.000 0.00 0.00 37.60 4.30
7890 8093 2.230660 GAAACTACTGCAAGCAACCCT 58.769 47.619 0.00 0.00 37.60 4.34
7891 8094 1.953686 TGAAACTACTGCAAGCAACCC 59.046 47.619 0.00 0.00 37.60 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.