Multiple sequence alignment - TraesCS6B01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G249800 chr6B 100.000 3347 0 0 1 3347 448669281 448665935 0.000000e+00 6181.0
1 TraesCS6B01G249800 chr6B 89.888 89 9 0 3256 3344 703681420 703681508 7.590000e-22 115.0
2 TraesCS6B01G249800 chr6D 95.822 1891 51 12 510 2382 288542319 288540439 0.000000e+00 3029.0
3 TraesCS6B01G249800 chr6D 81.425 393 42 15 2685 3054 288540035 288539651 3.270000e-75 292.0
4 TraesCS6B01G249800 chr6D 87.222 180 16 7 2484 2658 80096998 80096821 7.320000e-47 198.0
5 TraesCS6B01G249800 chr6D 89.116 147 11 4 3055 3199 288539618 288539475 9.540000e-41 178.0
6 TraesCS6B01G249800 chr6D 89.844 128 10 2 410 536 288542451 288542326 9.610000e-36 161.0
7 TraesCS6B01G249800 chr6D 94.915 59 2 1 2381 2439 288540145 288540088 1.280000e-14 91.6
8 TraesCS6B01G249800 chr6A 94.577 1973 67 14 486 2439 437020701 437022652 0.000000e+00 3014.0
9 TraesCS6B01G249800 chr6A 87.538 666 56 13 2683 3347 437022706 437023345 0.000000e+00 745.0
10 TraesCS6B01G249800 chr2A 83.383 1336 202 15 1026 2348 600529951 600528623 0.000000e+00 1219.0
11 TraesCS6B01G249800 chr2A 87.778 180 15 7 2484 2658 286414872 286415049 1.570000e-48 204.0
12 TraesCS6B01G249800 chr2D 82.864 1348 199 19 1026 2348 457255782 457254442 0.000000e+00 1181.0
13 TraesCS6B01G249800 chr2B 82.861 1342 204 18 1026 2348 538012152 538010818 0.000000e+00 1181.0
14 TraesCS6B01G249800 chr2B 88.043 184 18 4 2488 2669 58096361 58096180 7.270000e-52 215.0
15 TraesCS6B01G249800 chr2B 94.245 139 8 0 276 414 659771184 659771322 2.620000e-51 213.0
16 TraesCS6B01G249800 chr2B 92.806 139 10 0 276 414 105418049 105417911 5.660000e-48 202.0
17 TraesCS6B01G249800 chr2B 88.971 136 8 6 168 298 659771023 659771156 9.610000e-36 161.0
18 TraesCS6B01G249800 chr2B 90.000 90 8 1 3256 3344 636775465 636775554 7.590000e-22 115.0
19 TraesCS6B01G249800 chr2B 89.773 88 9 0 3256 3343 451836812 451836899 2.730000e-21 113.0
20 TraesCS6B01G249800 chrUn 88.204 373 40 4 1160 1530 479365935 479365565 3.060000e-120 442.0
21 TraesCS6B01G249800 chrUn 89.011 182 18 2 2490 2670 71310535 71310355 1.210000e-54 224.0
22 TraesCS6B01G249800 chr1B 77.495 511 97 15 1041 1539 632634803 632634299 1.170000e-74 291.0
23 TraesCS6B01G249800 chr7B 76.697 545 90 27 1027 1539 74299812 74300351 5.500000e-68 268.0
24 TraesCS6B01G249800 chr7B 88.268 179 18 3 2490 2666 99134265 99134088 9.410000e-51 211.0
25 TraesCS6B01G249800 chr7B 87.006 177 18 5 2486 2658 100006362 100006537 9.480000e-46 195.0
26 TraesCS6B01G249800 chr7D 76.044 551 88 27 1027 1539 114818036 114818580 2.580000e-61 246.0
27 TraesCS6B01G249800 chr7D 86.667 180 17 7 2484 2658 560755397 560755574 3.410000e-45 193.0
28 TraesCS6B01G249800 chr4D 87.283 173 17 5 2490 2658 190142113 190141942 3.410000e-45 193.0
29 TraesCS6B01G249800 chr3B 85.870 184 23 3 2490 2672 149472070 149471889 3.410000e-45 193.0
30 TraesCS6B01G249800 chr3B 92.135 89 7 0 3256 3344 519399171 519399259 3.510000e-25 126.0
31 TraesCS6B01G249800 chr3B 90.909 88 6 2 3257 3344 739874301 739874386 2.110000e-22 117.0
32 TraesCS6B01G249800 chr3B 88.889 90 9 1 3256 3344 229307719 229307808 3.530000e-20 110.0
33 TraesCS6B01G249800 chr5A 89.130 92 9 1 3257 3347 493864254 493864163 2.730000e-21 113.0
34 TraesCS6B01G249800 chr4A 88.172 93 10 1 3256 3347 674523544 674523452 3.530000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G249800 chr6B 448665935 448669281 3346 True 6181.00 6181 100.0000 1 3347 1 chr6B.!!$R1 3346
1 TraesCS6B01G249800 chr6D 288539475 288542451 2976 True 750.32 3029 90.2244 410 3199 5 chr6D.!!$R2 2789
2 TraesCS6B01G249800 chr6A 437020701 437023345 2644 False 1879.50 3014 91.0575 486 3347 2 chr6A.!!$F1 2861
3 TraesCS6B01G249800 chr2A 600528623 600529951 1328 True 1219.00 1219 83.3830 1026 2348 1 chr2A.!!$R1 1322
4 TraesCS6B01G249800 chr2D 457254442 457255782 1340 True 1181.00 1181 82.8640 1026 2348 1 chr2D.!!$R1 1322
5 TraesCS6B01G249800 chr2B 538010818 538012152 1334 True 1181.00 1181 82.8610 1026 2348 1 chr2B.!!$R3 1322
6 TraesCS6B01G249800 chr1B 632634299 632634803 504 True 291.00 291 77.4950 1041 1539 1 chr1B.!!$R1 498
7 TraesCS6B01G249800 chr7B 74299812 74300351 539 False 268.00 268 76.6970 1027 1539 1 chr7B.!!$F1 512
8 TraesCS6B01G249800 chr7D 114818036 114818580 544 False 246.00 246 76.0440 1027 1539 1 chr7D.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.104304 AGAACACGTCCGAACAAGCT 59.896 50.0 0.00 0.0 0.00 3.74 F
346 347 0.257328 TATCTTCCGCAATTGGCCCA 59.743 50.0 7.72 0.0 40.31 5.36 F
969 1013 0.313987 CGAAACAAAAGGAGGCACCC 59.686 55.0 0.00 0.0 40.05 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2187 0.809241 GCTTGCTCCGTGATCTCCAG 60.809 60.000 0.0 0.0 0.00 3.86 R
2300 2417 2.567169 TCCCAGACATCGAACACATTCT 59.433 45.455 0.0 0.0 32.12 2.40 R
2848 3293 0.586319 CACTGAACAAACATCGCCGT 59.414 50.000 0.0 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.809174 TGAGCCGACGTCAATGCG 60.809 61.111 17.16 0.91 37.94 4.73
19 20 1.515519 GAGCCGACGTCAATGCGTA 60.516 57.895 17.16 0.00 45.79 4.42
20 21 1.472276 GAGCCGACGTCAATGCGTAG 61.472 60.000 17.16 3.66 45.79 3.51
33 34 4.104143 CGTAGCTACCTTTGGGCG 57.896 61.111 18.16 0.00 35.63 6.13
34 35 1.520787 CGTAGCTACCTTTGGGCGG 60.521 63.158 18.16 0.00 35.63 6.13
35 36 1.153229 GTAGCTACCTTTGGGCGGG 60.153 63.158 13.20 0.00 35.63 6.13
36 37 1.306312 TAGCTACCTTTGGGCGGGA 60.306 57.895 0.00 0.00 35.63 5.14
37 38 0.910566 TAGCTACCTTTGGGCGGGAA 60.911 55.000 0.00 0.00 35.63 3.97
38 39 1.303806 GCTACCTTTGGGCGGGAAA 60.304 57.895 0.00 0.00 35.63 3.13
39 40 1.313091 GCTACCTTTGGGCGGGAAAG 61.313 60.000 0.00 0.00 35.63 2.62
41 42 2.679996 CCTTTGGGCGGGAAAGGG 60.680 66.667 11.55 0.00 44.00 3.95
42 43 3.381983 CTTTGGGCGGGAAAGGGC 61.382 66.667 0.00 0.00 0.00 5.19
59 60 3.801997 CGCAGGCCAGGGAGGATT 61.802 66.667 5.01 0.00 41.22 3.01
60 61 2.685999 GCAGGCCAGGGAGGATTT 59.314 61.111 5.01 0.00 41.22 2.17
61 62 1.000866 GCAGGCCAGGGAGGATTTT 59.999 57.895 5.01 0.00 41.22 1.82
62 63 0.615827 GCAGGCCAGGGAGGATTTTT 60.616 55.000 5.01 0.00 41.22 1.94
76 77 2.907917 TTTTTGGGCGGGACACGG 60.908 61.111 0.00 0.00 44.51 4.94
83 84 4.980805 GCGGGACACGGCAGTCAA 62.981 66.667 0.00 0.00 44.51 3.18
84 85 2.280524 CGGGACACGGCAGTCAAA 60.281 61.111 8.99 0.00 40.29 2.69
85 86 1.890041 CGGGACACGGCAGTCAAAA 60.890 57.895 8.99 0.00 40.29 2.44
86 87 1.841663 CGGGACACGGCAGTCAAAAG 61.842 60.000 8.99 0.00 40.29 2.27
87 88 1.282875 GGACACGGCAGTCAAAAGC 59.717 57.895 8.99 0.00 40.29 3.51
88 89 1.082756 GACACGGCAGTCAAAAGCG 60.083 57.895 2.55 0.00 38.40 4.68
89 90 2.252260 CACGGCAGTCAAAAGCGG 59.748 61.111 0.00 0.00 37.15 5.52
90 91 2.978010 ACGGCAGTCAAAAGCGGG 60.978 61.111 0.00 0.00 35.65 6.13
91 92 2.978010 CGGCAGTCAAAAGCGGGT 60.978 61.111 0.00 0.00 0.00 5.28
92 93 2.644992 GGCAGTCAAAAGCGGGTG 59.355 61.111 0.00 0.00 0.00 4.61
93 94 2.193536 GGCAGTCAAAAGCGGGTGT 61.194 57.895 0.00 0.00 0.00 4.16
94 95 1.008538 GCAGTCAAAAGCGGGTGTG 60.009 57.895 0.00 0.00 0.00 3.82
95 96 1.654220 CAGTCAAAAGCGGGTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
96 97 2.193536 AGTCAAAAGCGGGTGTGGC 61.194 57.895 0.00 0.00 0.00 5.01
97 98 2.124109 TCAAAAGCGGGTGTGGCA 60.124 55.556 0.00 0.00 0.00 4.92
98 99 2.192861 TCAAAAGCGGGTGTGGCAG 61.193 57.895 0.00 0.00 0.00 4.85
99 100 2.123897 AAAAGCGGGTGTGGCAGT 60.124 55.556 0.00 0.00 0.00 4.40
100 101 2.489275 AAAAGCGGGTGTGGCAGTG 61.489 57.895 0.00 0.00 0.00 3.66
101 102 2.902423 AAAAGCGGGTGTGGCAGTGA 62.902 55.000 0.00 0.00 0.00 3.41
102 103 4.626081 AGCGGGTGTGGCAGTGAC 62.626 66.667 0.00 0.00 0.00 3.67
107 108 3.936203 GTGTGGCAGTGACCCGGA 61.936 66.667 0.73 0.00 0.00 5.14
108 109 3.936203 TGTGGCAGTGACCCGGAC 61.936 66.667 0.73 0.00 0.00 4.79
109 110 3.936203 GTGGCAGTGACCCGGACA 61.936 66.667 0.73 0.00 0.00 4.02
110 111 3.936203 TGGCAGTGACCCGGACAC 61.936 66.667 19.16 19.16 38.38 3.67
111 112 3.936203 GGCAGTGACCCGGACACA 61.936 66.667 25.26 11.49 40.25 3.72
112 113 2.347490 GCAGTGACCCGGACACAT 59.653 61.111 25.26 13.00 40.25 3.21
113 114 2.034879 GCAGTGACCCGGACACATG 61.035 63.158 25.26 20.86 40.25 3.21
114 115 2.034879 CAGTGACCCGGACACATGC 61.035 63.158 25.26 6.66 40.25 4.06
115 116 2.031919 GTGACCCGGACACATGCA 59.968 61.111 20.96 0.00 38.05 3.96
116 117 1.599518 GTGACCCGGACACATGCAA 60.600 57.895 20.96 0.00 38.05 4.08
117 118 1.149401 TGACCCGGACACATGCAAA 59.851 52.632 0.73 0.00 0.00 3.68
118 119 0.888736 TGACCCGGACACATGCAAAG 60.889 55.000 0.73 0.00 0.00 2.77
119 120 2.200170 GACCCGGACACATGCAAAGC 62.200 60.000 0.73 0.00 0.00 3.51
120 121 2.568090 CCGGACACATGCAAAGCC 59.432 61.111 0.00 0.00 0.00 4.35
121 122 2.568090 CGGACACATGCAAAGCCC 59.432 61.111 0.00 0.00 0.00 5.19
122 123 1.973281 CGGACACATGCAAAGCCCT 60.973 57.895 0.00 0.00 0.00 5.19
123 124 0.676466 CGGACACATGCAAAGCCCTA 60.676 55.000 0.00 0.00 0.00 3.53
124 125 1.767759 GGACACATGCAAAGCCCTAT 58.232 50.000 0.00 0.00 0.00 2.57
125 126 2.744823 CGGACACATGCAAAGCCCTATA 60.745 50.000 0.00 0.00 0.00 1.31
126 127 3.287222 GGACACATGCAAAGCCCTATAA 58.713 45.455 0.00 0.00 0.00 0.98
127 128 3.891366 GGACACATGCAAAGCCCTATAAT 59.109 43.478 0.00 0.00 0.00 1.28
128 129 4.342092 GGACACATGCAAAGCCCTATAATT 59.658 41.667 0.00 0.00 0.00 1.40
129 130 5.163416 GGACACATGCAAAGCCCTATAATTT 60.163 40.000 0.00 0.00 0.00 1.82
130 131 5.663456 ACACATGCAAAGCCCTATAATTTG 58.337 37.500 0.00 0.00 37.07 2.32
131 132 5.187576 ACACATGCAAAGCCCTATAATTTGT 59.812 36.000 0.00 0.00 36.52 2.83
132 133 6.108015 CACATGCAAAGCCCTATAATTTGTT 58.892 36.000 0.00 0.00 36.52 2.83
133 134 6.594937 CACATGCAAAGCCCTATAATTTGTTT 59.405 34.615 0.00 0.00 36.52 2.83
134 135 7.119553 CACATGCAAAGCCCTATAATTTGTTTT 59.880 33.333 0.00 0.00 36.52 2.43
135 136 7.665145 ACATGCAAAGCCCTATAATTTGTTTTT 59.335 29.630 0.00 0.00 36.52 1.94
136 137 7.432350 TGCAAAGCCCTATAATTTGTTTTTG 57.568 32.000 0.00 0.00 36.52 2.44
137 138 6.429385 TGCAAAGCCCTATAATTTGTTTTTGG 59.571 34.615 0.00 0.00 36.52 3.28
138 139 6.128035 GCAAAGCCCTATAATTTGTTTTTGGG 60.128 38.462 0.00 0.00 36.52 4.12
139 140 6.696042 AAGCCCTATAATTTGTTTTTGGGT 57.304 33.333 0.00 0.00 36.00 4.51
140 141 6.696042 AGCCCTATAATTTGTTTTTGGGTT 57.304 33.333 0.00 0.00 36.00 4.11
141 142 6.472016 AGCCCTATAATTTGTTTTTGGGTTG 58.528 36.000 0.00 0.00 36.00 3.77
142 143 5.123186 GCCCTATAATTTGTTTTTGGGTTGC 59.877 40.000 0.00 0.00 36.00 4.17
143 144 5.645929 CCCTATAATTTGTTTTTGGGTTGCC 59.354 40.000 0.00 0.00 0.00 4.52
144 145 6.234177 CCTATAATTTGTTTTTGGGTTGCCA 58.766 36.000 0.00 0.00 0.00 4.92
145 146 6.712547 CCTATAATTTGTTTTTGGGTTGCCAA 59.287 34.615 0.00 0.00 0.00 4.52
146 147 7.229506 CCTATAATTTGTTTTTGGGTTGCCAAA 59.770 33.333 0.00 0.00 37.82 3.28
147 148 5.728637 AATTTGTTTTTGGGTTGCCAAAA 57.271 30.435 0.00 0.00 44.56 2.44
166 167 3.668596 AAAAGAACACGTCCGAACAAG 57.331 42.857 0.00 0.00 0.00 3.16
167 168 0.935196 AAGAACACGTCCGAACAAGC 59.065 50.000 0.00 0.00 0.00 4.01
168 169 0.104304 AGAACACGTCCGAACAAGCT 59.896 50.000 0.00 0.00 0.00 3.74
169 170 0.935196 GAACACGTCCGAACAAGCTT 59.065 50.000 0.00 0.00 0.00 3.74
170 171 1.329599 GAACACGTCCGAACAAGCTTT 59.670 47.619 0.00 0.00 0.00 3.51
171 172 2.228138 ACACGTCCGAACAAGCTTTA 57.772 45.000 0.00 0.00 0.00 1.85
172 173 2.762745 ACACGTCCGAACAAGCTTTAT 58.237 42.857 0.00 0.00 0.00 1.40
173 174 3.135994 ACACGTCCGAACAAGCTTTATT 58.864 40.909 0.00 0.00 0.00 1.40
174 175 3.562557 ACACGTCCGAACAAGCTTTATTT 59.437 39.130 0.00 0.00 0.00 1.40
175 176 4.035909 ACACGTCCGAACAAGCTTTATTTT 59.964 37.500 0.00 0.00 0.00 1.82
176 177 4.973663 CACGTCCGAACAAGCTTTATTTTT 59.026 37.500 0.00 0.00 0.00 1.94
210 211 9.691362 TCACACTTCATTAATTAAAAAGCCTTC 57.309 29.630 17.31 0.00 0.00 3.46
211 212 8.638565 CACACTTCATTAATTAAAAAGCCTTCG 58.361 33.333 17.31 8.50 0.00 3.79
212 213 7.812669 ACACTTCATTAATTAAAAAGCCTTCGG 59.187 33.333 17.31 8.02 0.00 4.30
213 214 8.026607 CACTTCATTAATTAAAAAGCCTTCGGA 58.973 33.333 17.31 0.00 0.00 4.55
214 215 8.581578 ACTTCATTAATTAAAAAGCCTTCGGAA 58.418 29.630 17.31 0.00 0.00 4.30
215 216 9.586435 CTTCATTAATTAAAAAGCCTTCGGAAT 57.414 29.630 1.21 0.00 0.00 3.01
216 217 9.581099 TTCATTAATTAAAAAGCCTTCGGAATC 57.419 29.630 1.21 0.00 0.00 2.52
217 218 8.966868 TCATTAATTAAAAAGCCTTCGGAATCT 58.033 29.630 1.21 0.00 0.00 2.40
218 219 9.237846 CATTAATTAAAAAGCCTTCGGAATCTC 57.762 33.333 1.21 0.00 0.00 2.75
219 220 5.836821 ATTAAAAAGCCTTCGGAATCTCC 57.163 39.130 0.00 0.00 0.00 3.71
234 235 4.686554 GGAATCTCCGTCACTATTACATGC 59.313 45.833 0.00 0.00 0.00 4.06
235 236 4.937201 ATCTCCGTCACTATTACATGCA 57.063 40.909 0.00 0.00 0.00 3.96
236 237 4.307443 TCTCCGTCACTATTACATGCAG 57.693 45.455 0.00 0.00 0.00 4.41
237 238 3.951680 TCTCCGTCACTATTACATGCAGA 59.048 43.478 0.00 0.00 0.00 4.26
238 239 4.401202 TCTCCGTCACTATTACATGCAGAA 59.599 41.667 0.00 0.00 0.00 3.02
239 240 5.069119 TCTCCGTCACTATTACATGCAGAAT 59.931 40.000 0.00 0.00 0.00 2.40
240 241 6.264518 TCTCCGTCACTATTACATGCAGAATA 59.735 38.462 0.00 0.00 0.00 1.75
241 242 6.213677 TCCGTCACTATTACATGCAGAATAC 58.786 40.000 0.00 0.00 0.00 1.89
242 243 5.983118 CCGTCACTATTACATGCAGAATACA 59.017 40.000 0.00 0.00 0.00 2.29
243 244 6.646653 CCGTCACTATTACATGCAGAATACAT 59.353 38.462 0.00 0.00 0.00 2.29
244 245 7.171508 CCGTCACTATTACATGCAGAATACATT 59.828 37.037 0.00 0.00 0.00 2.71
245 246 8.217115 CGTCACTATTACATGCAGAATACATTC 58.783 37.037 0.00 0.00 37.06 2.67
246 247 9.045223 GTCACTATTACATGCAGAATACATTCA 57.955 33.333 4.85 0.00 39.23 2.57
247 248 9.264719 TCACTATTACATGCAGAATACATTCAG 57.735 33.333 4.85 0.00 39.23 3.02
248 249 9.264719 CACTATTACATGCAGAATACATTCAGA 57.735 33.333 4.85 0.00 39.23 3.27
249 250 9.836864 ACTATTACATGCAGAATACATTCAGAA 57.163 29.630 4.85 0.00 39.23 3.02
251 252 7.558161 TTACATGCAGAATACATTCAGAAGG 57.442 36.000 4.85 0.00 39.23 3.46
252 253 4.337555 ACATGCAGAATACATTCAGAAGGC 59.662 41.667 4.85 1.61 39.23 4.35
253 254 3.954200 TGCAGAATACATTCAGAAGGCA 58.046 40.909 4.85 3.79 39.23 4.75
254 255 3.691118 TGCAGAATACATTCAGAAGGCAC 59.309 43.478 4.85 0.00 39.23 5.01
255 256 3.691118 GCAGAATACATTCAGAAGGCACA 59.309 43.478 4.85 0.00 39.23 4.57
256 257 4.337555 GCAGAATACATTCAGAAGGCACAT 59.662 41.667 4.85 0.00 39.23 3.21
257 258 5.505324 GCAGAATACATTCAGAAGGCACATC 60.505 44.000 4.85 0.00 39.23 3.06
258 259 5.821470 CAGAATACATTCAGAAGGCACATCT 59.179 40.000 4.85 0.00 36.55 2.90
259 260 6.018098 CAGAATACATTCAGAAGGCACATCTC 60.018 42.308 4.85 0.00 32.32 2.75
260 261 2.625737 ACATTCAGAAGGCACATCTCG 58.374 47.619 0.00 0.00 32.32 4.04
261 262 1.329906 CATTCAGAAGGCACATCTCGC 59.670 52.381 0.00 0.00 32.32 5.03
268 269 4.547859 GCACATCTCGCCATTCCT 57.452 55.556 0.00 0.00 0.00 3.36
269 270 2.020131 GCACATCTCGCCATTCCTG 58.980 57.895 0.00 0.00 0.00 3.86
270 271 0.462581 GCACATCTCGCCATTCCTGA 60.463 55.000 0.00 0.00 0.00 3.86
271 272 1.579698 CACATCTCGCCATTCCTGAG 58.420 55.000 0.00 0.00 0.00 3.35
272 273 1.137675 CACATCTCGCCATTCCTGAGA 59.862 52.381 0.00 0.00 42.47 3.27
273 274 1.137872 ACATCTCGCCATTCCTGAGAC 59.862 52.381 0.00 0.00 41.21 3.36
274 275 1.137675 CATCTCGCCATTCCTGAGACA 59.862 52.381 0.00 0.00 41.21 3.41
275 276 0.532573 TCTCGCCATTCCTGAGACAC 59.467 55.000 0.00 0.00 34.00 3.67
276 277 0.534412 CTCGCCATTCCTGAGACACT 59.466 55.000 0.00 0.00 31.31 3.55
277 278 0.976641 TCGCCATTCCTGAGACACTT 59.023 50.000 0.00 0.00 0.00 3.16
278 279 1.066858 TCGCCATTCCTGAGACACTTC 60.067 52.381 0.00 0.00 0.00 3.01
279 280 1.363744 GCCATTCCTGAGACACTTCG 58.636 55.000 0.00 0.00 0.00 3.79
280 281 1.338200 GCCATTCCTGAGACACTTCGT 60.338 52.381 0.00 0.00 0.00 3.85
281 282 2.611518 CCATTCCTGAGACACTTCGTC 58.388 52.381 0.00 0.00 45.77 4.20
294 295 6.541111 GACACTTCGTCTCCATAAAACTTT 57.459 37.500 0.00 0.00 41.81 2.66
295 296 6.300354 ACACTTCGTCTCCATAAAACTTTG 57.700 37.500 0.00 0.00 0.00 2.77
296 297 5.147162 CACTTCGTCTCCATAAAACTTTGC 58.853 41.667 0.00 0.00 0.00 3.68
297 298 4.819630 ACTTCGTCTCCATAAAACTTTGCA 59.180 37.500 0.00 0.00 0.00 4.08
298 299 5.473504 ACTTCGTCTCCATAAAACTTTGCAT 59.526 36.000 0.00 0.00 0.00 3.96
299 300 5.545658 TCGTCTCCATAAAACTTTGCATC 57.454 39.130 0.00 0.00 0.00 3.91
300 301 5.245531 TCGTCTCCATAAAACTTTGCATCT 58.754 37.500 0.00 0.00 0.00 2.90
301 302 5.351465 TCGTCTCCATAAAACTTTGCATCTC 59.649 40.000 0.00 0.00 0.00 2.75
302 303 5.352569 CGTCTCCATAAAACTTTGCATCTCT 59.647 40.000 0.00 0.00 0.00 3.10
303 304 6.549952 GTCTCCATAAAACTTTGCATCTCTG 58.450 40.000 0.00 0.00 0.00 3.35
313 314 2.031360 GCATCTCTGCCAATCCTGC 58.969 57.895 0.00 0.00 42.88 4.85
314 315 0.750546 GCATCTCTGCCAATCCTGCA 60.751 55.000 0.00 0.00 42.88 4.41
315 316 1.982660 CATCTCTGCCAATCCTGCAT 58.017 50.000 0.00 0.00 38.22 3.96
316 317 1.880675 CATCTCTGCCAATCCTGCATC 59.119 52.381 0.00 0.00 38.22 3.91
317 318 0.913924 TCTCTGCCAATCCTGCATCA 59.086 50.000 0.00 0.00 38.22 3.07
318 319 1.282738 TCTCTGCCAATCCTGCATCAA 59.717 47.619 0.00 0.00 38.22 2.57
319 320 2.097036 CTCTGCCAATCCTGCATCAAA 58.903 47.619 0.00 0.00 38.22 2.69
320 321 1.820519 TCTGCCAATCCTGCATCAAAC 59.179 47.619 0.00 0.00 38.22 2.93
321 322 1.546923 CTGCCAATCCTGCATCAAACA 59.453 47.619 0.00 0.00 38.22 2.83
322 323 1.273048 TGCCAATCCTGCATCAAACAC 59.727 47.619 0.00 0.00 32.85 3.32
323 324 1.547372 GCCAATCCTGCATCAAACACT 59.453 47.619 0.00 0.00 0.00 3.55
324 325 2.028748 GCCAATCCTGCATCAAACACTT 60.029 45.455 0.00 0.00 0.00 3.16
325 326 3.193267 GCCAATCCTGCATCAAACACTTA 59.807 43.478 0.00 0.00 0.00 2.24
326 327 4.321899 GCCAATCCTGCATCAAACACTTAA 60.322 41.667 0.00 0.00 0.00 1.85
327 328 5.625197 GCCAATCCTGCATCAAACACTTAAT 60.625 40.000 0.00 0.00 0.00 1.40
328 329 6.405731 GCCAATCCTGCATCAAACACTTAATA 60.406 38.462 0.00 0.00 0.00 0.98
329 330 7.685155 GCCAATCCTGCATCAAACACTTAATAT 60.685 37.037 0.00 0.00 0.00 1.28
330 331 7.864379 CCAATCCTGCATCAAACACTTAATATC 59.136 37.037 0.00 0.00 0.00 1.63
331 332 8.627403 CAATCCTGCATCAAACACTTAATATCT 58.373 33.333 0.00 0.00 0.00 1.98
332 333 8.757982 ATCCTGCATCAAACACTTAATATCTT 57.242 30.769 0.00 0.00 0.00 2.40
333 334 8.213518 TCCTGCATCAAACACTTAATATCTTC 57.786 34.615 0.00 0.00 0.00 2.87
334 335 7.283127 TCCTGCATCAAACACTTAATATCTTCC 59.717 37.037 0.00 0.00 0.00 3.46
335 336 7.015226 TGCATCAAACACTTAATATCTTCCG 57.985 36.000 0.00 0.00 0.00 4.30
336 337 5.909610 GCATCAAACACTTAATATCTTCCGC 59.090 40.000 0.00 0.00 0.00 5.54
337 338 6.458206 GCATCAAACACTTAATATCTTCCGCA 60.458 38.462 0.00 0.00 0.00 5.69
338 339 7.471721 CATCAAACACTTAATATCTTCCGCAA 58.528 34.615 0.00 0.00 0.00 4.85
339 340 7.624360 TCAAACACTTAATATCTTCCGCAAT 57.376 32.000 0.00 0.00 0.00 3.56
340 341 8.050778 TCAAACACTTAATATCTTCCGCAATT 57.949 30.769 0.00 0.00 0.00 2.32
341 342 7.967854 TCAAACACTTAATATCTTCCGCAATTG 59.032 33.333 0.00 0.00 0.00 2.32
342 343 6.377327 ACACTTAATATCTTCCGCAATTGG 57.623 37.500 7.72 0.00 0.00 3.16
343 344 5.215160 CACTTAATATCTTCCGCAATTGGC 58.785 41.667 7.72 0.00 39.90 4.52
344 345 4.278419 ACTTAATATCTTCCGCAATTGGCC 59.722 41.667 7.72 0.00 40.31 5.36
345 346 1.620822 ATATCTTCCGCAATTGGCCC 58.379 50.000 7.72 0.00 40.31 5.80
346 347 0.257328 TATCTTCCGCAATTGGCCCA 59.743 50.000 7.72 0.00 40.31 5.36
347 348 1.039233 ATCTTCCGCAATTGGCCCAG 61.039 55.000 7.72 0.00 40.31 4.45
348 349 3.360956 CTTCCGCAATTGGCCCAGC 62.361 63.158 7.72 0.00 40.31 4.85
349 350 3.884704 TTCCGCAATTGGCCCAGCT 62.885 57.895 7.72 0.00 40.31 4.24
350 351 4.137872 CCGCAATTGGCCCAGCTG 62.138 66.667 6.78 6.78 40.31 4.24
351 352 4.807039 CGCAATTGGCCCAGCTGC 62.807 66.667 8.66 8.65 40.31 5.25
352 353 3.387947 GCAATTGGCCCAGCTGCT 61.388 61.111 8.66 0.00 36.11 4.24
353 354 2.577059 CAATTGGCCCAGCTGCTG 59.423 61.111 22.44 22.44 0.00 4.41
354 355 1.980232 CAATTGGCCCAGCTGCTGA 60.980 57.895 30.10 10.84 32.44 4.26
355 356 1.681327 AATTGGCCCAGCTGCTGAG 60.681 57.895 30.10 19.23 32.44 3.35
356 357 2.146146 AATTGGCCCAGCTGCTGAGA 62.146 55.000 30.10 11.29 32.44 3.27
357 358 2.146146 ATTGGCCCAGCTGCTGAGAA 62.146 55.000 30.10 16.07 32.44 2.87
358 359 2.438075 GGCCCAGCTGCTGAGAAG 60.438 66.667 30.10 16.09 32.44 2.85
359 360 2.350514 GCCCAGCTGCTGAGAAGT 59.649 61.111 30.10 0.00 32.44 3.01
360 361 1.303155 GCCCAGCTGCTGAGAAGTT 60.303 57.895 30.10 0.00 32.44 2.66
361 362 1.304509 GCCCAGCTGCTGAGAAGTTC 61.305 60.000 30.10 0.42 32.44 3.01
362 363 0.324285 CCCAGCTGCTGAGAAGTTCT 59.676 55.000 30.10 4.68 32.44 3.01
363 364 1.271271 CCCAGCTGCTGAGAAGTTCTT 60.271 52.381 30.10 0.00 32.44 2.52
364 365 1.805345 CCAGCTGCTGAGAAGTTCTTG 59.195 52.381 30.10 6.05 32.44 3.02
365 366 1.197264 CAGCTGCTGAGAAGTTCTTGC 59.803 52.381 24.88 18.88 32.44 4.01
366 367 1.202734 AGCTGCTGAGAAGTTCTTGCA 60.203 47.619 23.71 23.71 35.86 4.08
367 368 1.811359 GCTGCTGAGAAGTTCTTGCAT 59.189 47.619 24.73 0.00 36.34 3.96
368 369 2.414293 GCTGCTGAGAAGTTCTTGCATG 60.414 50.000 24.73 20.33 36.34 4.06
369 370 1.538512 TGCTGAGAAGTTCTTGCATGC 59.461 47.619 22.36 11.82 33.62 4.06
370 371 1.538512 GCTGAGAAGTTCTTGCATGCA 59.461 47.619 18.46 18.46 0.00 3.96
371 372 2.667724 GCTGAGAAGTTCTTGCATGCAC 60.668 50.000 22.58 9.12 0.00 4.57
372 373 2.812591 CTGAGAAGTTCTTGCATGCACT 59.187 45.455 22.58 12.47 0.00 4.40
373 374 3.999001 CTGAGAAGTTCTTGCATGCACTA 59.001 43.478 22.58 8.66 0.00 2.74
374 375 4.582869 TGAGAAGTTCTTGCATGCACTAT 58.417 39.130 22.58 6.63 0.00 2.12
375 376 5.005740 TGAGAAGTTCTTGCATGCACTATT 58.994 37.500 22.58 11.04 0.00 1.73
376 377 5.474532 TGAGAAGTTCTTGCATGCACTATTT 59.525 36.000 22.58 11.29 0.00 1.40
377 378 6.654582 TGAGAAGTTCTTGCATGCACTATTTA 59.345 34.615 22.58 3.16 0.00 1.40
378 379 7.337689 TGAGAAGTTCTTGCATGCACTATTTAT 59.662 33.333 22.58 8.75 0.00 1.40
379 380 7.701445 AGAAGTTCTTGCATGCACTATTTATC 58.299 34.615 22.58 13.36 0.00 1.75
380 381 7.337689 AGAAGTTCTTGCATGCACTATTTATCA 59.662 33.333 22.58 0.59 0.00 2.15
381 382 7.024340 AGTTCTTGCATGCACTATTTATCAG 57.976 36.000 22.58 11.94 0.00 2.90
382 383 5.428496 TCTTGCATGCACTATTTATCAGC 57.572 39.130 22.58 0.00 0.00 4.26
383 384 4.276678 TCTTGCATGCACTATTTATCAGCC 59.723 41.667 22.58 0.00 0.00 4.85
384 385 3.824133 TGCATGCACTATTTATCAGCCT 58.176 40.909 18.46 0.00 0.00 4.58
385 386 4.971939 TGCATGCACTATTTATCAGCCTA 58.028 39.130 18.46 0.00 0.00 3.93
386 387 5.375773 TGCATGCACTATTTATCAGCCTAA 58.624 37.500 18.46 0.00 0.00 2.69
387 388 5.239306 TGCATGCACTATTTATCAGCCTAAC 59.761 40.000 18.46 0.00 0.00 2.34
388 389 5.239306 GCATGCACTATTTATCAGCCTAACA 59.761 40.000 14.21 0.00 0.00 2.41
389 390 6.567321 GCATGCACTATTTATCAGCCTAACAG 60.567 42.308 14.21 0.00 0.00 3.16
390 391 4.816385 TGCACTATTTATCAGCCTAACAGC 59.184 41.667 0.00 0.00 0.00 4.40
391 392 4.214332 GCACTATTTATCAGCCTAACAGCC 59.786 45.833 0.00 0.00 0.00 4.85
392 393 5.615289 CACTATTTATCAGCCTAACAGCCT 58.385 41.667 0.00 0.00 0.00 4.58
393 394 5.468072 CACTATTTATCAGCCTAACAGCCTG 59.532 44.000 0.00 0.00 0.00 4.85
394 395 4.778213 ATTTATCAGCCTAACAGCCTGA 57.222 40.909 0.00 0.00 0.00 3.86
395 396 4.568072 TTTATCAGCCTAACAGCCTGAA 57.432 40.909 0.00 0.00 0.00 3.02
396 397 4.778213 TTATCAGCCTAACAGCCTGAAT 57.222 40.909 0.00 0.00 0.00 2.57
397 398 2.408271 TCAGCCTAACAGCCTGAATG 57.592 50.000 0.00 0.00 0.00 2.67
398 399 0.737219 CAGCCTAACAGCCTGAATGC 59.263 55.000 0.00 0.00 0.00 3.56
399 400 0.329261 AGCCTAACAGCCTGAATGCA 59.671 50.000 0.00 0.00 0.00 3.96
400 401 1.176527 GCCTAACAGCCTGAATGCAA 58.823 50.000 0.00 0.00 0.00 4.08
401 402 1.753073 GCCTAACAGCCTGAATGCAAT 59.247 47.619 0.00 0.00 0.00 3.56
402 403 2.223665 GCCTAACAGCCTGAATGCAATC 60.224 50.000 0.00 0.00 0.00 2.67
403 404 2.360165 CCTAACAGCCTGAATGCAATCC 59.640 50.000 0.00 0.00 0.00 3.01
404 405 1.927487 AACAGCCTGAATGCAATCCA 58.073 45.000 0.00 0.00 0.00 3.41
405 406 2.154567 ACAGCCTGAATGCAATCCAT 57.845 45.000 0.00 0.00 35.06 3.41
406 407 2.463752 ACAGCCTGAATGCAATCCATT 58.536 42.857 0.00 0.00 46.57 3.16
407 408 2.835764 ACAGCCTGAATGCAATCCATTT 59.164 40.909 0.00 0.00 44.02 2.32
408 409 3.118884 ACAGCCTGAATGCAATCCATTTC 60.119 43.478 0.00 0.00 44.02 2.17
417 418 9.923143 CTGAATGCAATCCATTTCAACATATAT 57.077 29.630 0.00 0.00 44.02 0.86
429 430 7.796958 TTTCAACATATATAGATCTGCGACG 57.203 36.000 5.18 0.00 0.00 5.12
439 440 1.369091 ATCTGCGACGGATGGCAAAC 61.369 55.000 0.00 0.00 39.28 2.93
455 456 0.521659 AAACACGCACGGTTCAAACG 60.522 50.000 0.00 0.00 37.36 3.60
476 477 3.179939 GCGGACGGTTCGAAGCTC 61.180 66.667 23.57 18.41 0.00 4.09
478 479 2.506438 GGACGGTTCGAAGCTCCG 60.506 66.667 23.57 21.90 45.26 4.63
482 483 2.861006 GGTTCGAAGCTCCGTTGC 59.139 61.111 19.71 0.00 0.00 4.17
561 592 1.301716 TGAAGTTGCTGTCGGCCTC 60.302 57.895 0.00 0.00 40.92 4.70
589 620 1.652947 ACCAGTTAAGTCCACCCGAT 58.347 50.000 0.00 0.00 0.00 4.18
613 644 5.105473 TCCACGGAACTTTCTAATCCACTAG 60.105 44.000 0.00 0.00 32.58 2.57
662 693 2.203788 ACAGAGCTCGGTTCCCCA 60.204 61.111 14.18 0.00 0.00 4.96
764 801 1.147376 CCCAACCACAAGACCACGA 59.853 57.895 0.00 0.00 0.00 4.35
864 904 2.342279 CTTCCGTCGCCACCTGAA 59.658 61.111 0.00 0.00 0.00 3.02
897 941 2.829120 CCTTTTCTCCGCCCCATAAAAA 59.171 45.455 0.00 0.00 0.00 1.94
899 943 3.443145 TTTCTCCGCCCCATAAAAAGA 57.557 42.857 0.00 0.00 0.00 2.52
903 947 1.431845 CGCCCCATAAAAAGACGCC 59.568 57.895 0.00 0.00 0.00 5.68
905 949 2.000215 GCCCCATAAAAAGACGCCGG 62.000 60.000 0.00 0.00 0.00 6.13
937 981 3.131478 CCCGGTCATTCCAACGCC 61.131 66.667 0.00 0.00 35.57 5.68
963 1007 2.134201 GCCCAACGAAACAAAAGGAG 57.866 50.000 0.00 0.00 0.00 3.69
965 1009 1.269569 CCCAACGAAACAAAAGGAGGC 60.270 52.381 0.00 0.00 0.00 4.70
966 1010 1.407258 CCAACGAAACAAAAGGAGGCA 59.593 47.619 0.00 0.00 0.00 4.75
968 1012 1.029681 ACGAAACAAAAGGAGGCACC 58.970 50.000 0.00 0.00 39.35 5.01
969 1013 0.313987 CGAAACAAAAGGAGGCACCC 59.686 55.000 0.00 0.00 40.05 4.61
971 1015 0.762842 AAACAAAAGGAGGCACCCCC 60.763 55.000 0.00 0.00 40.05 5.40
973 1017 1.607467 CAAAAGGAGGCACCCCCTG 60.607 63.158 0.00 0.00 46.60 4.45
974 1018 2.091283 AAAAGGAGGCACCCCCTGT 61.091 57.895 0.00 0.00 46.60 4.00
975 1019 0.774491 AAAAGGAGGCACCCCCTGTA 60.774 55.000 0.00 0.00 46.60 2.74
976 1020 1.498176 AAAGGAGGCACCCCCTGTAC 61.498 60.000 0.00 0.00 46.60 2.90
977 1021 3.782443 GGAGGCACCCCCTGTACG 61.782 72.222 0.00 0.00 46.60 3.67
980 1024 3.078836 GGCACCCCCTGTACGCTA 61.079 66.667 0.00 0.00 0.00 4.26
982 1026 2.493030 CACCCCCTGTACGCTACG 59.507 66.667 0.00 0.00 0.00 3.51
983 1027 3.455469 ACCCCCTGTACGCTACGC 61.455 66.667 0.00 0.00 0.00 4.42
984 1028 4.217159 CCCCCTGTACGCTACGCC 62.217 72.222 0.00 0.00 0.00 5.68
1015 1059 3.566853 CTATGTGCACGCCAGCGG 61.567 66.667 17.33 6.57 44.69 5.52
1719 1836 4.594854 TGCAAGGGCCGGCTCAAA 62.595 61.111 31.81 7.74 40.13 2.69
2025 2142 1.203758 TGCGTCATCAACCAGTACGAT 59.796 47.619 0.00 0.00 35.66 3.73
2044 2161 1.975407 GACCTCGGGTTCCTCGACA 60.975 63.158 0.00 0.00 35.25 4.35
2348 2476 1.141665 CACCGCCGATCATCTGACA 59.858 57.895 0.00 0.00 0.00 3.58
2401 2823 6.642733 TTTATCAAGAGAAGAGGGGAACAT 57.357 37.500 0.00 0.00 0.00 2.71
2439 2861 1.661112 GACGGAGAAACATGCTGTAGC 59.339 52.381 0.00 0.00 42.50 3.58
2455 2877 6.127810 GCTGTAGCATTCTCATCATTTTGA 57.872 37.500 0.00 0.00 41.59 2.69
2456 2878 5.970023 GCTGTAGCATTCTCATCATTTTGAC 59.030 40.000 0.00 0.00 41.59 3.18
2457 2879 6.403964 GCTGTAGCATTCTCATCATTTTGACA 60.404 38.462 0.00 0.00 41.59 3.58
2458 2880 7.634671 TGTAGCATTCTCATCATTTTGACAT 57.365 32.000 0.00 0.00 0.00 3.06
2459 2881 7.477494 TGTAGCATTCTCATCATTTTGACATG 58.523 34.615 0.00 0.00 0.00 3.21
2486 2908 6.589523 CCAGAGAAGATTCAACTGTCACTAAG 59.410 42.308 14.15 0.00 34.50 2.18
2487 2909 7.374272 CAGAGAAGATTCAACTGTCACTAAGA 58.626 38.462 9.86 0.00 32.97 2.10
2488 2910 7.869937 CAGAGAAGATTCAACTGTCACTAAGAA 59.130 37.037 9.86 0.00 32.97 2.52
2489 2911 7.870445 AGAGAAGATTCAACTGTCACTAAGAAC 59.130 37.037 0.00 0.00 0.00 3.01
2490 2912 7.500992 AGAAGATTCAACTGTCACTAAGAACA 58.499 34.615 0.00 0.00 0.00 3.18
2493 2915 9.778741 AAGATTCAACTGTCACTAAGAACATAA 57.221 29.630 0.00 0.00 0.00 1.90
2497 2919 8.322906 TCAACTGTCACTAAGAACATAATTGG 57.677 34.615 0.00 0.00 0.00 3.16
2498 2920 7.936847 TCAACTGTCACTAAGAACATAATTGGT 59.063 33.333 0.00 0.00 0.00 3.67
2499 2921 8.567948 CAACTGTCACTAAGAACATAATTGGTT 58.432 33.333 0.00 0.00 0.00 3.67
2501 2923 8.567948 ACTGTCACTAAGAACATAATTGGTTTG 58.432 33.333 0.00 0.00 0.00 2.93
2502 2924 7.881142 TGTCACTAAGAACATAATTGGTTTGG 58.119 34.615 0.00 0.00 0.00 3.28
2503 2925 7.504238 TGTCACTAAGAACATAATTGGTTTGGT 59.496 33.333 0.00 0.00 0.00 3.67
2504 2926 7.807907 GTCACTAAGAACATAATTGGTTTGGTG 59.192 37.037 0.00 0.00 30.64 4.17
2505 2927 6.586082 CACTAAGAACATAATTGGTTTGGTGC 59.414 38.462 0.00 0.00 0.00 5.01
2506 2928 4.535526 AGAACATAATTGGTTTGGTGCC 57.464 40.909 0.00 0.00 0.00 5.01
2533 2955 4.582760 CATGCCAATGCTTGCGTT 57.417 50.000 0.00 0.00 36.07 4.84
2534 2956 2.074942 CATGCCAATGCTTGCGTTG 58.925 52.632 17.71 17.71 36.07 4.10
2535 2957 0.668096 CATGCCAATGCTTGCGTTGT 60.668 50.000 21.36 5.37 36.07 3.32
2536 2958 0.668096 ATGCCAATGCTTGCGTTGTG 60.668 50.000 21.36 15.25 38.71 3.33
2537 2959 2.660612 GCCAATGCTTGCGTTGTGC 61.661 57.895 21.36 19.49 38.26 4.57
2538 2960 2.023223 CCAATGCTTGCGTTGTGCC 61.023 57.895 21.36 0.00 45.60 5.01
2539 2961 1.300003 CAATGCTTGCGTTGTGCCA 60.300 52.632 16.73 0.00 45.60 4.92
2540 2962 0.875040 CAATGCTTGCGTTGTGCCAA 60.875 50.000 16.73 0.00 45.60 4.52
2541 2963 0.179089 AATGCTTGCGTTGTGCCAAA 60.179 45.000 0.00 0.00 45.60 3.28
2542 2964 0.033781 ATGCTTGCGTTGTGCCAAAT 59.966 45.000 0.00 0.00 45.60 2.32
2543 2965 0.670706 TGCTTGCGTTGTGCCAAATA 59.329 45.000 0.00 0.00 45.60 1.40
2544 2966 1.271934 TGCTTGCGTTGTGCCAAATAT 59.728 42.857 0.00 0.00 45.60 1.28
2545 2967 2.288702 TGCTTGCGTTGTGCCAAATATT 60.289 40.909 0.00 0.00 45.60 1.28
2546 2968 2.092524 GCTTGCGTTGTGCCAAATATTG 59.907 45.455 0.00 0.00 45.60 1.90
2568 2990 7.556733 TTGGCTATAACTTAATTGGTTACCG 57.443 36.000 0.00 4.64 32.92 4.02
2569 2991 6.887013 TGGCTATAACTTAATTGGTTACCGA 58.113 36.000 0.00 0.00 32.92 4.69
2570 2992 6.987992 TGGCTATAACTTAATTGGTTACCGAG 59.012 38.462 0.00 7.21 32.92 4.63
2571 2993 6.988580 GGCTATAACTTAATTGGTTACCGAGT 59.011 38.462 0.00 0.00 32.92 4.18
2572 2994 7.496920 GGCTATAACTTAATTGGTTACCGAGTT 59.503 37.037 0.00 4.84 32.92 3.01
2573 2995 8.333186 GCTATAACTTAATTGGTTACCGAGTTG 58.667 37.037 0.00 0.00 32.92 3.16
2574 2996 9.374838 CTATAACTTAATTGGTTACCGAGTTGT 57.625 33.333 0.00 3.57 32.92 3.32
2575 2997 6.947644 AACTTAATTGGTTACCGAGTTGTT 57.052 33.333 0.00 1.13 0.00 2.83
2576 2998 6.947644 ACTTAATTGGTTACCGAGTTGTTT 57.052 33.333 0.00 0.00 0.00 2.83
2577 2999 7.337480 ACTTAATTGGTTACCGAGTTGTTTT 57.663 32.000 0.00 0.00 0.00 2.43
2578 3000 7.197703 ACTTAATTGGTTACCGAGTTGTTTTG 58.802 34.615 0.00 0.00 0.00 2.44
2579 3001 3.423996 TTGGTTACCGAGTTGTTTTGC 57.576 42.857 0.00 0.00 0.00 3.68
2580 3002 1.677052 TGGTTACCGAGTTGTTTTGCC 59.323 47.619 0.00 0.00 0.00 4.52
2581 3003 1.001048 GGTTACCGAGTTGTTTTGCCC 60.001 52.381 0.00 0.00 0.00 5.36
2582 3004 1.677052 GTTACCGAGTTGTTTTGCCCA 59.323 47.619 0.00 0.00 0.00 5.36
2583 3005 2.279935 TACCGAGTTGTTTTGCCCAT 57.720 45.000 0.00 0.00 0.00 4.00
2584 3006 0.958822 ACCGAGTTGTTTTGCCCATC 59.041 50.000 0.00 0.00 0.00 3.51
2585 3007 1.247567 CCGAGTTGTTTTGCCCATCT 58.752 50.000 0.00 0.00 0.00 2.90
2586 3008 1.200020 CCGAGTTGTTTTGCCCATCTC 59.800 52.381 0.00 0.00 0.00 2.75
2587 3009 1.879380 CGAGTTGTTTTGCCCATCTCA 59.121 47.619 0.00 0.00 31.19 3.27
2588 3010 2.489329 CGAGTTGTTTTGCCCATCTCAT 59.511 45.455 0.00 0.00 31.19 2.90
2589 3011 3.689161 CGAGTTGTTTTGCCCATCTCATA 59.311 43.478 0.00 0.00 31.19 2.15
2590 3012 4.336433 CGAGTTGTTTTGCCCATCTCATAT 59.664 41.667 0.00 0.00 31.19 1.78
2591 3013 5.527214 CGAGTTGTTTTGCCCATCTCATATA 59.473 40.000 0.00 0.00 31.19 0.86
2592 3014 6.038161 CGAGTTGTTTTGCCCATCTCATATAA 59.962 38.462 0.00 0.00 31.19 0.98
2593 3015 7.415095 CGAGTTGTTTTGCCCATCTCATATAAA 60.415 37.037 0.00 0.00 31.19 1.40
2594 3016 7.775120 AGTTGTTTTGCCCATCTCATATAAAG 58.225 34.615 0.00 0.00 0.00 1.85
2595 3017 7.397192 AGTTGTTTTGCCCATCTCATATAAAGT 59.603 33.333 0.00 0.00 0.00 2.66
2596 3018 7.716799 TGTTTTGCCCATCTCATATAAAGTT 57.283 32.000 0.00 0.00 0.00 2.66
2597 3019 7.546358 TGTTTTGCCCATCTCATATAAAGTTG 58.454 34.615 0.00 0.00 0.00 3.16
2598 3020 5.772825 TTGCCCATCTCATATAAAGTTGC 57.227 39.130 0.00 0.00 0.00 4.17
2599 3021 4.144297 TGCCCATCTCATATAAAGTTGCC 58.856 43.478 0.00 0.00 0.00 4.52
2600 3022 4.144297 GCCCATCTCATATAAAGTTGCCA 58.856 43.478 0.00 0.00 0.00 4.92
2601 3023 4.584325 GCCCATCTCATATAAAGTTGCCAA 59.416 41.667 0.00 0.00 0.00 4.52
2602 3024 5.244626 GCCCATCTCATATAAAGTTGCCAAT 59.755 40.000 0.00 0.00 0.00 3.16
2603 3025 6.434028 GCCCATCTCATATAAAGTTGCCAATA 59.566 38.462 0.00 0.00 0.00 1.90
2604 3026 7.039784 GCCCATCTCATATAAAGTTGCCAATAA 60.040 37.037 0.00 0.00 0.00 1.40
2605 3027 9.028284 CCCATCTCATATAAAGTTGCCAATAAT 57.972 33.333 0.00 0.00 0.00 1.28
2619 3041 4.806640 CCAATAATTGGCAAGTCTTGGT 57.193 40.909 26.92 0.00 45.17 3.67
2620 3042 5.913137 CCAATAATTGGCAAGTCTTGGTA 57.087 39.130 26.92 2.77 45.17 3.25
2621 3043 6.469782 CCAATAATTGGCAAGTCTTGGTAT 57.530 37.500 26.92 4.89 45.17 2.73
2622 3044 6.877236 CCAATAATTGGCAAGTCTTGGTATT 58.123 36.000 26.92 10.06 45.17 1.89
2623 3045 6.757947 CCAATAATTGGCAAGTCTTGGTATTG 59.242 38.462 26.92 18.74 45.17 1.90
2624 3046 7.322664 CAATAATTGGCAAGTCTTGGTATTGT 58.677 34.615 15.37 0.00 0.00 2.71
2625 3047 5.391312 AATTGGCAAGTCTTGGTATTGTC 57.609 39.130 14.40 0.00 0.00 3.18
2626 3048 3.500448 TGGCAAGTCTTGGTATTGTCA 57.500 42.857 14.40 0.00 36.27 3.58
2627 3049 3.826524 TGGCAAGTCTTGGTATTGTCAA 58.173 40.909 14.40 0.00 35.74 3.18
2628 3050 4.406456 TGGCAAGTCTTGGTATTGTCAAT 58.594 39.130 14.40 3.06 35.74 2.57
2629 3051 5.565509 TGGCAAGTCTTGGTATTGTCAATA 58.434 37.500 14.40 0.89 35.74 1.90
2630 3052 6.186957 TGGCAAGTCTTGGTATTGTCAATAT 58.813 36.000 14.40 0.00 35.74 1.28
2631 3053 6.663093 TGGCAAGTCTTGGTATTGTCAATATT 59.337 34.615 14.40 0.00 35.74 1.28
2632 3054 7.178274 TGGCAAGTCTTGGTATTGTCAATATTT 59.822 33.333 14.40 0.00 35.74 1.40
2633 3055 7.489113 GGCAAGTCTTGGTATTGTCAATATTTG 59.511 37.037 14.40 2.45 0.00 2.32
2634 3056 7.489113 GCAAGTCTTGGTATTGTCAATATTTGG 59.511 37.037 14.40 1.65 0.00 3.28
2635 3057 7.100458 AGTCTTGGTATTGTCAATATTTGGC 57.900 36.000 8.50 2.48 35.37 4.52
2636 3058 5.971202 GTCTTGGTATTGTCAATATTTGGCG 59.029 40.000 8.50 0.00 38.34 5.69
2637 3059 5.883115 TCTTGGTATTGTCAATATTTGGCGA 59.117 36.000 8.50 0.00 38.34 5.54
2638 3060 6.545666 TCTTGGTATTGTCAATATTTGGCGAT 59.454 34.615 8.50 0.69 41.95 4.58
2639 3061 6.070897 TGGTATTGTCAATATTTGGCGATG 57.929 37.500 8.50 0.00 39.61 3.84
2640 3062 4.917415 GGTATTGTCAATATTTGGCGATGC 59.083 41.667 8.50 3.82 39.61 3.91
2660 3082 3.331478 CCAAATATTGGCAGCAAACCA 57.669 42.857 0.00 0.00 45.17 3.67
2667 3089 3.591196 TTGGCAGCAAACCAATCATAC 57.409 42.857 0.00 0.00 42.23 2.39
2668 3090 2.806434 TGGCAGCAAACCAATCATACT 58.194 42.857 0.00 0.00 33.12 2.12
2669 3091 2.754552 TGGCAGCAAACCAATCATACTC 59.245 45.455 0.00 0.00 33.12 2.59
2670 3092 3.019564 GGCAGCAAACCAATCATACTCT 58.980 45.455 0.00 0.00 0.00 3.24
2671 3093 4.199310 GGCAGCAAACCAATCATACTCTA 58.801 43.478 0.00 0.00 0.00 2.43
2672 3094 4.640201 GGCAGCAAACCAATCATACTCTAA 59.360 41.667 0.00 0.00 0.00 2.10
2673 3095 5.125417 GGCAGCAAACCAATCATACTCTAAA 59.875 40.000 0.00 0.00 0.00 1.85
2674 3096 6.030228 GCAGCAAACCAATCATACTCTAAAC 58.970 40.000 0.00 0.00 0.00 2.01
2675 3097 6.127897 GCAGCAAACCAATCATACTCTAAACT 60.128 38.462 0.00 0.00 0.00 2.66
2676 3098 7.575720 GCAGCAAACCAATCATACTCTAAACTT 60.576 37.037 0.00 0.00 0.00 2.66
2677 3099 7.752239 CAGCAAACCAATCATACTCTAAACTTG 59.248 37.037 0.00 0.00 0.00 3.16
2678 3100 7.448469 AGCAAACCAATCATACTCTAAACTTGT 59.552 33.333 0.00 0.00 0.00 3.16
2679 3101 8.726988 GCAAACCAATCATACTCTAAACTTGTA 58.273 33.333 0.00 0.00 0.00 2.41
2712 3134 5.482163 TGAGTGGAGTGTTGTCATTATCA 57.518 39.130 0.00 0.00 0.00 2.15
2740 3162 7.759433 CAGACACCTTTGTTGTAAATTCTTTGT 59.241 33.333 0.00 0.00 35.47 2.83
2743 3165 7.544217 ACACCTTTGTTGTAAATTCTTTGTGAC 59.456 33.333 0.00 0.00 28.43 3.67
2752 3174 9.515020 TTGTAAATTCTTTGTGACTTCAATGAC 57.485 29.630 0.00 0.00 33.43 3.06
2764 3186 5.769662 TGACTTCAATGACTACCAAGCAAAT 59.230 36.000 0.00 0.00 0.00 2.32
2812 3257 6.127591 ACTGAATGTAGGTCAGATGTACACTC 60.128 42.308 8.36 0.00 44.44 3.51
2817 3262 1.067846 GGTCAGATGTACACTCGTGCA 60.068 52.381 0.00 0.00 42.26 4.57
2859 3304 2.766345 TAGGGTTTACGGCGATGTTT 57.234 45.000 16.62 0.00 0.00 2.83
2868 3313 0.110238 CGGCGATGTTTGTTCAGTGG 60.110 55.000 0.00 0.00 0.00 4.00
2869 3314 0.240945 GGCGATGTTTGTTCAGTGGG 59.759 55.000 0.00 0.00 0.00 4.61
2891 3336 5.299782 GGGAGTAGATGTTCTCGTTGACTAT 59.700 44.000 0.00 0.00 0.00 2.12
2915 3360 1.723542 ACGTCTGTAGTGACTACGTCG 59.276 52.381 22.11 22.11 41.76 5.12
2918 3363 3.301707 CGTCTGTAGTGACTACGTCGATC 60.302 52.174 17.07 8.01 39.58 3.69
2932 3377 9.395707 GACTACGTCGATCTCAAAATATTATGT 57.604 33.333 0.00 0.00 0.00 2.29
2935 3380 8.642908 ACGTCGATCTCAAAATATTATGTCAA 57.357 30.769 0.00 0.00 0.00 3.18
2972 3417 5.712752 AGGTGCTTATAGGGATAGTGTGTA 58.287 41.667 0.00 0.00 0.00 2.90
3033 3478 5.932883 TCTGCAATTGTACCGTGTTAACATA 59.067 36.000 12.26 0.00 0.00 2.29
3204 3683 6.268847 AGGAGGTCATACTAAATCATGGACTC 59.731 42.308 0.00 0.00 0.00 3.36
3205 3684 6.426646 AGGTCATACTAAATCATGGACTCC 57.573 41.667 0.00 0.00 0.00 3.85
3206 3685 5.011125 AGGTCATACTAAATCATGGACTCCG 59.989 44.000 0.00 0.00 0.00 4.63
3207 3686 5.010719 GGTCATACTAAATCATGGACTCCGA 59.989 44.000 0.00 0.00 0.00 4.55
3212 3691 9.658799 CATACTAAATCATGGACTCCGATAAAT 57.341 33.333 0.00 0.00 0.00 1.40
3214 3693 8.980481 ACTAAATCATGGACTCCGATAAATTT 57.020 30.769 0.00 0.00 0.00 1.82
3215 3694 9.057089 ACTAAATCATGGACTCCGATAAATTTC 57.943 33.333 0.00 0.00 0.00 2.17
3216 3695 7.880160 AAATCATGGACTCCGATAAATTTCA 57.120 32.000 0.00 0.00 0.00 2.69
3217 3696 7.880160 AATCATGGACTCCGATAAATTTCAA 57.120 32.000 0.00 0.00 0.00 2.69
3218 3697 7.880160 ATCATGGACTCCGATAAATTTCAAA 57.120 32.000 0.00 0.00 0.00 2.69
3220 3699 5.539582 TGGACTCCGATAAATTTCAAACG 57.460 39.130 0.00 0.00 0.00 3.60
3221 3700 4.142773 TGGACTCCGATAAATTTCAAACGC 60.143 41.667 0.00 0.00 0.00 4.84
3222 3701 4.094442 GGACTCCGATAAATTTCAAACGCT 59.906 41.667 0.00 0.00 0.00 5.07
3223 3702 5.391629 GGACTCCGATAAATTTCAAACGCTT 60.392 40.000 0.00 0.00 0.00 4.68
3224 3703 5.390613 ACTCCGATAAATTTCAAACGCTTG 58.609 37.500 0.00 0.00 0.00 4.01
3225 3704 5.180492 ACTCCGATAAATTTCAAACGCTTGA 59.820 36.000 0.00 0.00 39.87 3.02
3244 3723 5.654497 CTTGAATTTTAAGCATGTCCTCCC 58.346 41.667 0.00 0.00 0.00 4.30
3249 3728 0.174845 TAAGCATGTCCTCCCGAACG 59.825 55.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.202703 TACGCATTGACGTCGGCTCA 62.203 55.000 19.79 8.37 44.43 4.26
1 2 1.472276 CTACGCATTGACGTCGGCTC 61.472 60.000 19.79 6.41 44.43 4.70
2 3 1.516386 CTACGCATTGACGTCGGCT 60.516 57.895 19.79 11.89 44.43 5.52
3 4 2.995482 CTACGCATTGACGTCGGC 59.005 61.111 11.62 13.28 44.43 5.54
4 5 0.248336 TAGCTACGCATTGACGTCGG 60.248 55.000 11.62 4.16 44.43 4.79
5 6 0.838229 GTAGCTACGCATTGACGTCG 59.162 55.000 8.40 1.00 44.43 5.12
6 7 1.197910 GGTAGCTACGCATTGACGTC 58.802 55.000 17.48 9.11 44.43 4.34
8 9 1.922570 AAGGTAGCTACGCATTGACG 58.077 50.000 17.48 0.00 39.50 4.35
9 10 2.351726 CCAAAGGTAGCTACGCATTGAC 59.648 50.000 24.72 10.03 0.00 3.18
10 11 2.627945 CCAAAGGTAGCTACGCATTGA 58.372 47.619 24.72 0.00 0.00 2.57
11 12 1.670811 CCCAAAGGTAGCTACGCATTG 59.329 52.381 17.48 18.90 0.00 2.82
12 13 2.017113 GCCCAAAGGTAGCTACGCATT 61.017 52.381 17.48 9.42 34.57 3.56
13 14 0.463833 GCCCAAAGGTAGCTACGCAT 60.464 55.000 17.48 3.53 34.57 4.73
14 15 1.078708 GCCCAAAGGTAGCTACGCA 60.079 57.895 17.48 0.00 34.57 5.24
15 16 2.171725 CGCCCAAAGGTAGCTACGC 61.172 63.158 17.48 12.58 34.57 4.42
16 17 1.520787 CCGCCCAAAGGTAGCTACG 60.521 63.158 17.48 3.77 34.57 3.51
17 18 1.153229 CCCGCCCAAAGGTAGCTAC 60.153 63.158 15.88 15.88 34.57 3.58
18 19 0.910566 TTCCCGCCCAAAGGTAGCTA 60.911 55.000 0.00 0.00 34.57 3.32
19 20 1.785353 TTTCCCGCCCAAAGGTAGCT 61.785 55.000 0.00 0.00 34.57 3.32
20 21 1.303806 TTTCCCGCCCAAAGGTAGC 60.304 57.895 0.00 0.00 34.57 3.58
21 22 0.679960 CCTTTCCCGCCCAAAGGTAG 60.680 60.000 8.96 0.00 43.50 3.18
22 23 1.381076 CCTTTCCCGCCCAAAGGTA 59.619 57.895 8.96 0.00 43.50 3.08
23 24 2.117423 CCTTTCCCGCCCAAAGGT 59.883 61.111 8.96 0.00 43.50 3.50
24 25 2.679996 CCCTTTCCCGCCCAAAGG 60.680 66.667 9.83 9.83 46.71 3.11
25 26 3.381983 GCCCTTTCCCGCCCAAAG 61.382 66.667 0.00 0.00 0.00 2.77
42 43 2.843912 AAAATCCTCCCTGGCCTGCG 62.844 60.000 3.32 0.00 35.26 5.18
43 44 0.615827 AAAAATCCTCCCTGGCCTGC 60.616 55.000 3.32 0.00 35.26 4.85
44 45 3.697799 AAAAATCCTCCCTGGCCTG 57.302 52.632 3.32 2.54 35.26 4.85
59 60 2.907917 CCGTGTCCCGCCCAAAAA 60.908 61.111 0.00 0.00 34.38 1.94
66 67 4.980805 TTGACTGCCGTGTCCCGC 62.981 66.667 0.00 0.00 36.21 6.13
67 68 1.841663 CTTTTGACTGCCGTGTCCCG 61.842 60.000 0.00 0.00 36.21 5.14
68 69 1.949257 CTTTTGACTGCCGTGTCCC 59.051 57.895 0.00 0.00 36.21 4.46
69 70 1.282875 GCTTTTGACTGCCGTGTCC 59.717 57.895 0.00 0.00 36.21 4.02
70 71 1.082756 CGCTTTTGACTGCCGTGTC 60.083 57.895 0.00 0.00 37.47 3.67
71 72 2.542907 CCGCTTTTGACTGCCGTGT 61.543 57.895 0.00 0.00 0.00 4.49
72 73 2.252260 CCGCTTTTGACTGCCGTG 59.748 61.111 0.00 0.00 0.00 4.94
73 74 2.978010 CCCGCTTTTGACTGCCGT 60.978 61.111 0.00 0.00 0.00 5.68
74 75 2.978010 ACCCGCTTTTGACTGCCG 60.978 61.111 0.00 0.00 0.00 5.69
75 76 2.193536 ACACCCGCTTTTGACTGCC 61.194 57.895 0.00 0.00 0.00 4.85
76 77 1.008538 CACACCCGCTTTTGACTGC 60.009 57.895 0.00 0.00 0.00 4.40
77 78 1.654220 CCACACCCGCTTTTGACTG 59.346 57.895 0.00 0.00 0.00 3.51
78 79 2.193536 GCCACACCCGCTTTTGACT 61.194 57.895 0.00 0.00 0.00 3.41
79 80 2.335011 GCCACACCCGCTTTTGAC 59.665 61.111 0.00 0.00 0.00 3.18
80 81 2.124109 TGCCACACCCGCTTTTGA 60.124 55.556 0.00 0.00 0.00 2.69
81 82 2.336088 CTGCCACACCCGCTTTTG 59.664 61.111 0.00 0.00 0.00 2.44
82 83 2.123897 ACTGCCACACCCGCTTTT 60.124 55.556 0.00 0.00 0.00 2.27
83 84 2.906897 CACTGCCACACCCGCTTT 60.907 61.111 0.00 0.00 0.00 3.51
84 85 3.872603 TCACTGCCACACCCGCTT 61.873 61.111 0.00 0.00 0.00 4.68
85 86 4.626081 GTCACTGCCACACCCGCT 62.626 66.667 0.00 0.00 0.00 5.52
90 91 3.936203 TCCGGGTCACTGCCACAC 61.936 66.667 0.00 0.00 0.00 3.82
91 92 3.936203 GTCCGGGTCACTGCCACA 61.936 66.667 0.00 0.00 0.00 4.17
92 93 3.936203 TGTCCGGGTCACTGCCAC 61.936 66.667 0.00 0.00 0.00 5.01
93 94 3.936203 GTGTCCGGGTCACTGCCA 61.936 66.667 15.76 0.00 33.59 4.92
94 95 3.254024 ATGTGTCCGGGTCACTGCC 62.254 63.158 21.86 0.13 36.83 4.85
95 96 2.034879 CATGTGTCCGGGTCACTGC 61.035 63.158 21.86 0.46 36.83 4.40
96 97 2.034879 GCATGTGTCCGGGTCACTG 61.035 63.158 21.86 17.71 36.83 3.66
97 98 2.050836 TTGCATGTGTCCGGGTCACT 62.051 55.000 21.86 7.91 36.83 3.41
98 99 1.169661 TTTGCATGTGTCCGGGTCAC 61.170 55.000 16.11 16.11 36.48 3.67
99 100 0.888736 CTTTGCATGTGTCCGGGTCA 60.889 55.000 0.00 0.00 0.00 4.02
100 101 1.875963 CTTTGCATGTGTCCGGGTC 59.124 57.895 0.00 0.00 0.00 4.46
101 102 2.268076 GCTTTGCATGTGTCCGGGT 61.268 57.895 0.00 0.00 0.00 5.28
102 103 2.568090 GCTTTGCATGTGTCCGGG 59.432 61.111 0.00 0.00 0.00 5.73
103 104 2.568090 GGCTTTGCATGTGTCCGG 59.432 61.111 0.00 0.00 0.00 5.14
104 105 0.676466 TAGGGCTTTGCATGTGTCCG 60.676 55.000 0.00 0.00 0.00 4.79
105 106 1.767759 ATAGGGCTTTGCATGTGTCC 58.232 50.000 0.00 0.00 0.00 4.02
106 107 5.520376 AATTATAGGGCTTTGCATGTGTC 57.480 39.130 0.00 0.00 0.00 3.67
107 108 5.187576 ACAAATTATAGGGCTTTGCATGTGT 59.812 36.000 0.00 0.00 34.08 3.72
108 109 5.663456 ACAAATTATAGGGCTTTGCATGTG 58.337 37.500 0.00 0.00 34.08 3.21
109 110 5.937975 ACAAATTATAGGGCTTTGCATGT 57.062 34.783 0.00 0.00 34.08 3.21
110 111 7.614124 AAAACAAATTATAGGGCTTTGCATG 57.386 32.000 0.00 0.00 34.08 4.06
111 112 7.121020 CCAAAAACAAATTATAGGGCTTTGCAT 59.879 33.333 0.00 0.00 34.08 3.96
112 113 6.429385 CCAAAAACAAATTATAGGGCTTTGCA 59.571 34.615 0.00 0.00 34.08 4.08
113 114 6.128035 CCCAAAAACAAATTATAGGGCTTTGC 60.128 38.462 0.00 0.00 34.08 3.68
114 115 6.939730 ACCCAAAAACAAATTATAGGGCTTTG 59.060 34.615 0.00 0.00 38.64 2.77
115 116 7.085476 ACCCAAAAACAAATTATAGGGCTTT 57.915 32.000 0.00 0.00 38.64 3.51
116 117 6.696042 ACCCAAAAACAAATTATAGGGCTT 57.304 33.333 0.00 0.00 38.64 4.35
117 118 6.472016 CAACCCAAAAACAAATTATAGGGCT 58.528 36.000 0.00 0.00 38.64 5.19
118 119 5.123186 GCAACCCAAAAACAAATTATAGGGC 59.877 40.000 0.00 0.00 38.64 5.19
119 120 5.645929 GGCAACCCAAAAACAAATTATAGGG 59.354 40.000 0.00 0.00 40.88 3.53
120 121 6.234177 TGGCAACCCAAAAACAAATTATAGG 58.766 36.000 0.00 0.00 38.46 2.57
145 146 3.729762 GCTTGTTCGGACGTGTTCTTTTT 60.730 43.478 0.00 0.00 0.00 1.94
146 147 2.223180 GCTTGTTCGGACGTGTTCTTTT 60.223 45.455 0.00 0.00 0.00 2.27
147 148 1.329599 GCTTGTTCGGACGTGTTCTTT 59.670 47.619 0.00 0.00 0.00 2.52
148 149 0.935196 GCTTGTTCGGACGTGTTCTT 59.065 50.000 0.00 0.00 0.00 2.52
149 150 0.104304 AGCTTGTTCGGACGTGTTCT 59.896 50.000 0.00 0.00 0.00 3.01
150 151 0.935196 AAGCTTGTTCGGACGTGTTC 59.065 50.000 0.00 0.00 0.00 3.18
151 152 1.375551 AAAGCTTGTTCGGACGTGTT 58.624 45.000 0.00 0.00 0.00 3.32
152 153 2.228138 TAAAGCTTGTTCGGACGTGT 57.772 45.000 0.00 0.00 0.00 4.49
153 154 3.806316 AATAAAGCTTGTTCGGACGTG 57.194 42.857 0.00 0.00 0.00 4.49
154 155 4.823790 AAAATAAAGCTTGTTCGGACGT 57.176 36.364 0.00 0.00 0.00 4.34
184 185 9.691362 GAAGGCTTTTTAATTAATGAAGTGTGA 57.309 29.630 16.75 0.00 0.00 3.58
185 186 8.638565 CGAAGGCTTTTTAATTAATGAAGTGTG 58.361 33.333 16.75 5.98 0.00 3.82
186 187 7.812669 CCGAAGGCTTTTTAATTAATGAAGTGT 59.187 33.333 16.75 7.43 46.14 3.55
187 188 8.173321 CCGAAGGCTTTTTAATTAATGAAGTG 57.827 34.615 16.75 3.68 46.14 3.16
211 212 4.686554 GCATGTAATAGTGACGGAGATTCC 59.313 45.833 0.00 0.00 0.00 3.01
212 213 5.289595 TGCATGTAATAGTGACGGAGATTC 58.710 41.667 0.00 0.00 0.00 2.52
213 214 5.069119 TCTGCATGTAATAGTGACGGAGATT 59.931 40.000 0.00 0.00 0.00 2.40
214 215 4.584743 TCTGCATGTAATAGTGACGGAGAT 59.415 41.667 0.00 0.00 0.00 2.75
215 216 3.951680 TCTGCATGTAATAGTGACGGAGA 59.048 43.478 0.00 0.00 0.00 3.71
216 217 4.307443 TCTGCATGTAATAGTGACGGAG 57.693 45.455 0.00 0.00 0.00 4.63
217 218 4.729227 TTCTGCATGTAATAGTGACGGA 57.271 40.909 0.00 0.00 0.00 4.69
218 219 5.983118 TGTATTCTGCATGTAATAGTGACGG 59.017 40.000 0.00 0.00 0.00 4.79
219 220 7.643528 ATGTATTCTGCATGTAATAGTGACG 57.356 36.000 0.00 0.00 0.00 4.35
220 221 9.045223 TGAATGTATTCTGCATGTAATAGTGAC 57.955 33.333 6.21 0.00 37.67 3.67
221 222 9.264719 CTGAATGTATTCTGCATGTAATAGTGA 57.735 33.333 6.21 0.00 37.67 3.41
222 223 9.264719 TCTGAATGTATTCTGCATGTAATAGTG 57.735 33.333 6.21 0.00 37.67 2.74
223 224 9.836864 TTCTGAATGTATTCTGCATGTAATAGT 57.163 29.630 6.21 0.00 37.67 2.12
225 226 9.276590 CCTTCTGAATGTATTCTGCATGTAATA 57.723 33.333 6.21 0.00 37.67 0.98
226 227 7.255381 GCCTTCTGAATGTATTCTGCATGTAAT 60.255 37.037 6.21 0.00 37.67 1.89
227 228 6.038603 GCCTTCTGAATGTATTCTGCATGTAA 59.961 38.462 6.21 0.00 37.67 2.41
228 229 5.528690 GCCTTCTGAATGTATTCTGCATGTA 59.471 40.000 6.21 0.00 37.67 2.29
229 230 4.337555 GCCTTCTGAATGTATTCTGCATGT 59.662 41.667 6.21 0.00 37.67 3.21
230 231 4.337274 TGCCTTCTGAATGTATTCTGCATG 59.663 41.667 6.21 0.00 37.67 4.06
231 232 4.337555 GTGCCTTCTGAATGTATTCTGCAT 59.662 41.667 6.21 0.00 37.67 3.96
232 233 3.691118 GTGCCTTCTGAATGTATTCTGCA 59.309 43.478 6.21 0.00 37.67 4.41
233 234 3.691118 TGTGCCTTCTGAATGTATTCTGC 59.309 43.478 6.21 2.79 37.67 4.26
234 235 5.821470 AGATGTGCCTTCTGAATGTATTCTG 59.179 40.000 6.21 5.81 37.67 3.02
235 236 5.999044 AGATGTGCCTTCTGAATGTATTCT 58.001 37.500 6.21 0.00 37.67 2.40
236 237 5.050499 CGAGATGTGCCTTCTGAATGTATTC 60.050 44.000 0.00 0.00 37.31 1.75
237 238 4.813161 CGAGATGTGCCTTCTGAATGTATT 59.187 41.667 0.00 0.00 0.00 1.89
238 239 4.375272 CGAGATGTGCCTTCTGAATGTAT 58.625 43.478 0.00 0.00 0.00 2.29
239 240 3.785486 CGAGATGTGCCTTCTGAATGTA 58.215 45.455 0.00 0.00 0.00 2.29
240 241 2.625737 CGAGATGTGCCTTCTGAATGT 58.374 47.619 0.00 0.00 0.00 2.71
241 242 1.329906 GCGAGATGTGCCTTCTGAATG 59.670 52.381 0.00 0.00 0.00 2.67
242 243 1.661341 GCGAGATGTGCCTTCTGAAT 58.339 50.000 0.00 0.00 0.00 2.57
243 244 3.143675 GCGAGATGTGCCTTCTGAA 57.856 52.632 0.00 0.00 0.00 3.02
244 245 4.919653 GCGAGATGTGCCTTCTGA 57.080 55.556 0.00 0.00 0.00 3.27
251 252 0.462581 TCAGGAATGGCGAGATGTGC 60.463 55.000 0.00 0.00 0.00 4.57
252 253 1.137675 TCTCAGGAATGGCGAGATGTG 59.862 52.381 0.00 0.00 30.94 3.21
253 254 1.137872 GTCTCAGGAATGGCGAGATGT 59.862 52.381 0.00 0.00 38.05 3.06
254 255 1.137675 TGTCTCAGGAATGGCGAGATG 59.862 52.381 0.00 0.00 38.05 2.90
255 256 1.137872 GTGTCTCAGGAATGGCGAGAT 59.862 52.381 0.00 0.00 38.05 2.75
256 257 0.532573 GTGTCTCAGGAATGGCGAGA 59.467 55.000 0.00 0.00 33.46 4.04
257 258 0.534412 AGTGTCTCAGGAATGGCGAG 59.466 55.000 0.00 0.00 0.00 5.03
258 259 0.976641 AAGTGTCTCAGGAATGGCGA 59.023 50.000 0.00 0.00 0.00 5.54
259 260 1.363744 GAAGTGTCTCAGGAATGGCG 58.636 55.000 0.00 0.00 0.00 5.69
260 261 1.338200 ACGAAGTGTCTCAGGAATGGC 60.338 52.381 0.00 0.00 42.51 4.40
261 262 2.751166 ACGAAGTGTCTCAGGAATGG 57.249 50.000 0.00 0.00 42.51 3.16
275 276 5.356882 TGCAAAGTTTTATGGAGACGAAG 57.643 39.130 0.00 0.00 0.00 3.79
276 277 5.705441 AGATGCAAAGTTTTATGGAGACGAA 59.295 36.000 0.00 0.00 0.00 3.85
277 278 5.245531 AGATGCAAAGTTTTATGGAGACGA 58.754 37.500 0.00 0.00 0.00 4.20
278 279 5.352569 AGAGATGCAAAGTTTTATGGAGACG 59.647 40.000 0.00 0.00 0.00 4.18
279 280 6.549952 CAGAGATGCAAAGTTTTATGGAGAC 58.450 40.000 0.00 0.00 0.00 3.36
280 281 5.124457 GCAGAGATGCAAAGTTTTATGGAGA 59.876 40.000 0.00 0.00 34.41 3.71
281 282 5.338365 GCAGAGATGCAAAGTTTTATGGAG 58.662 41.667 0.00 0.00 34.41 3.86
282 283 4.158394 GGCAGAGATGCAAAGTTTTATGGA 59.842 41.667 2.29 0.00 36.33 3.41
283 284 4.082081 TGGCAGAGATGCAAAGTTTTATGG 60.082 41.667 2.29 0.00 36.33 2.74
284 285 5.063180 TGGCAGAGATGCAAAGTTTTATG 57.937 39.130 2.29 0.00 36.33 1.90
285 286 5.726980 TTGGCAGAGATGCAAAGTTTTAT 57.273 34.783 2.29 0.00 36.33 1.40
286 287 5.336690 GGATTGGCAGAGATGCAAAGTTTTA 60.337 40.000 2.29 0.00 36.33 1.52
287 288 4.562143 GGATTGGCAGAGATGCAAAGTTTT 60.562 41.667 2.29 0.00 36.33 2.43
288 289 3.056322 GGATTGGCAGAGATGCAAAGTTT 60.056 43.478 2.29 0.00 36.33 2.66
289 290 2.494870 GGATTGGCAGAGATGCAAAGTT 59.505 45.455 2.29 0.00 36.33 2.66
290 291 2.097825 GGATTGGCAGAGATGCAAAGT 58.902 47.619 2.29 0.00 36.33 2.66
291 292 2.099263 CAGGATTGGCAGAGATGCAAAG 59.901 50.000 2.29 0.00 36.33 2.77
292 293 2.097036 CAGGATTGGCAGAGATGCAAA 58.903 47.619 2.29 0.00 36.33 3.68
293 294 1.758936 CAGGATTGGCAGAGATGCAA 58.241 50.000 2.29 0.00 36.33 4.08
294 295 0.750546 GCAGGATTGGCAGAGATGCA 60.751 55.000 10.65 0.00 36.33 3.96
295 296 0.750546 TGCAGGATTGGCAGAGATGC 60.751 55.000 9.12 9.12 36.11 3.91
296 297 1.880675 GATGCAGGATTGGCAGAGATG 59.119 52.381 0.00 0.00 45.68 2.90
297 298 1.493446 TGATGCAGGATTGGCAGAGAT 59.507 47.619 0.00 0.00 45.68 2.75
298 299 0.913924 TGATGCAGGATTGGCAGAGA 59.086 50.000 0.00 0.00 45.68 3.10
299 300 1.758936 TTGATGCAGGATTGGCAGAG 58.241 50.000 0.00 0.00 45.68 3.35
300 301 1.820519 GTTTGATGCAGGATTGGCAGA 59.179 47.619 0.00 0.00 45.68 4.26
301 302 1.546923 TGTTTGATGCAGGATTGGCAG 59.453 47.619 0.00 0.00 45.68 4.85
302 303 1.273048 GTGTTTGATGCAGGATTGGCA 59.727 47.619 0.00 0.00 46.66 4.92
303 304 1.547372 AGTGTTTGATGCAGGATTGGC 59.453 47.619 0.00 0.00 0.00 4.52
304 305 3.947910 AAGTGTTTGATGCAGGATTGG 57.052 42.857 0.00 0.00 0.00 3.16
305 306 8.627403 AGATATTAAGTGTTTGATGCAGGATTG 58.373 33.333 0.00 0.00 0.00 2.67
306 307 8.757982 AGATATTAAGTGTTTGATGCAGGATT 57.242 30.769 0.00 0.00 0.00 3.01
307 308 8.757982 AAGATATTAAGTGTTTGATGCAGGAT 57.242 30.769 0.00 0.00 0.00 3.24
308 309 7.283127 GGAAGATATTAAGTGTTTGATGCAGGA 59.717 37.037 0.00 0.00 0.00 3.86
309 310 7.420800 GGAAGATATTAAGTGTTTGATGCAGG 58.579 38.462 0.00 0.00 0.00 4.85
310 311 7.128331 CGGAAGATATTAAGTGTTTGATGCAG 58.872 38.462 0.00 0.00 0.00 4.41
311 312 6.458206 GCGGAAGATATTAAGTGTTTGATGCA 60.458 38.462 0.00 0.00 0.00 3.96
312 313 5.909610 GCGGAAGATATTAAGTGTTTGATGC 59.090 40.000 0.00 0.00 0.00 3.91
313 314 7.015226 TGCGGAAGATATTAAGTGTTTGATG 57.985 36.000 0.00 0.00 0.00 3.07
314 315 7.624360 TTGCGGAAGATATTAAGTGTTTGAT 57.376 32.000 0.00 0.00 0.00 2.57
315 316 7.624360 ATTGCGGAAGATATTAAGTGTTTGA 57.376 32.000 0.00 0.00 0.00 2.69
316 317 7.220683 CCAATTGCGGAAGATATTAAGTGTTTG 59.779 37.037 0.00 0.00 0.00 2.93
317 318 7.257722 CCAATTGCGGAAGATATTAAGTGTTT 58.742 34.615 0.00 0.00 0.00 2.83
318 319 6.680378 GCCAATTGCGGAAGATATTAAGTGTT 60.680 38.462 0.00 0.00 0.00 3.32
319 320 5.221048 GCCAATTGCGGAAGATATTAAGTGT 60.221 40.000 0.00 0.00 0.00 3.55
320 321 5.215160 GCCAATTGCGGAAGATATTAAGTG 58.785 41.667 0.00 0.00 0.00 3.16
321 322 4.278419 GGCCAATTGCGGAAGATATTAAGT 59.722 41.667 0.00 0.00 42.61 2.24
322 323 4.321230 GGGCCAATTGCGGAAGATATTAAG 60.321 45.833 4.39 0.00 42.61 1.85
323 324 3.572255 GGGCCAATTGCGGAAGATATTAA 59.428 43.478 4.39 0.00 42.61 1.40
324 325 3.153919 GGGCCAATTGCGGAAGATATTA 58.846 45.455 4.39 0.00 42.61 0.98
325 326 1.963515 GGGCCAATTGCGGAAGATATT 59.036 47.619 4.39 0.00 42.61 1.28
326 327 1.133513 TGGGCCAATTGCGGAAGATAT 60.134 47.619 2.13 0.00 42.61 1.63
327 328 0.257328 TGGGCCAATTGCGGAAGATA 59.743 50.000 2.13 0.00 42.61 1.98
328 329 1.000233 TGGGCCAATTGCGGAAGAT 60.000 52.632 2.13 0.00 42.61 2.40
329 330 1.678635 CTGGGCCAATTGCGGAAGA 60.679 57.895 8.04 0.00 42.61 2.87
330 331 2.887360 CTGGGCCAATTGCGGAAG 59.113 61.111 8.04 0.00 42.61 3.46
331 332 3.381136 GCTGGGCCAATTGCGGAA 61.381 61.111 8.04 0.00 42.61 4.30
332 333 4.365111 AGCTGGGCCAATTGCGGA 62.365 61.111 8.04 0.00 42.61 5.54
333 334 4.137872 CAGCTGGGCCAATTGCGG 62.138 66.667 8.04 4.66 42.61 5.69
334 335 4.807039 GCAGCTGGGCCAATTGCG 62.807 66.667 21.55 12.78 42.61 4.85
335 336 3.387947 AGCAGCTGGGCCAATTGC 61.388 61.111 26.13 26.13 40.16 3.56
336 337 1.945354 CTCAGCAGCTGGGCCAATTG 61.945 60.000 22.62 10.19 31.51 2.32
337 338 1.681327 CTCAGCAGCTGGGCCAATT 60.681 57.895 22.62 0.00 31.51 2.32
338 339 2.044252 CTCAGCAGCTGGGCCAAT 60.044 61.111 22.62 0.00 31.51 3.16
339 340 2.759641 CTTCTCAGCAGCTGGGCCAA 62.760 60.000 22.62 9.32 30.92 4.52
340 341 3.251509 TTCTCAGCAGCTGGGCCA 61.252 61.111 22.62 5.85 30.92 5.36
341 342 2.438075 CTTCTCAGCAGCTGGGCC 60.438 66.667 22.62 0.00 30.92 5.80
342 343 1.303155 AACTTCTCAGCAGCTGGGC 60.303 57.895 22.62 0.95 30.92 5.36
343 344 0.324285 AGAACTTCTCAGCAGCTGGG 59.676 55.000 22.62 20.03 32.35 4.45
344 345 1.805345 CAAGAACTTCTCAGCAGCTGG 59.195 52.381 22.62 12.98 31.51 4.85
345 346 1.197264 GCAAGAACTTCTCAGCAGCTG 59.803 52.381 17.10 17.10 30.71 4.24
346 347 1.202734 TGCAAGAACTTCTCAGCAGCT 60.203 47.619 12.48 0.00 34.13 4.24
347 348 1.233019 TGCAAGAACTTCTCAGCAGC 58.767 50.000 12.48 4.74 34.13 5.25
348 349 2.414293 GCATGCAAGAACTTCTCAGCAG 60.414 50.000 14.21 13.34 39.58 4.24
349 350 1.538512 GCATGCAAGAACTTCTCAGCA 59.461 47.619 14.21 16.72 40.19 4.41
350 351 1.538512 TGCATGCAAGAACTTCTCAGC 59.461 47.619 20.30 8.52 0.00 4.26
351 352 2.812591 AGTGCATGCAAGAACTTCTCAG 59.187 45.455 24.58 0.00 0.00 3.35
352 353 2.854963 AGTGCATGCAAGAACTTCTCA 58.145 42.857 24.58 0.00 0.00 3.27
353 354 5.557891 AATAGTGCATGCAAGAACTTCTC 57.442 39.130 24.58 6.49 0.00 2.87
354 355 5.972107 AAATAGTGCATGCAAGAACTTCT 57.028 34.783 24.58 15.63 0.00 2.85
355 356 7.475015 TGATAAATAGTGCATGCAAGAACTTC 58.525 34.615 24.58 14.23 0.00 3.01
356 357 7.395190 TGATAAATAGTGCATGCAAGAACTT 57.605 32.000 24.58 14.27 0.00 2.66
357 358 6.459298 GCTGATAAATAGTGCATGCAAGAACT 60.459 38.462 24.58 17.55 0.00 3.01
358 359 5.684626 GCTGATAAATAGTGCATGCAAGAAC 59.315 40.000 24.58 10.21 0.00 3.01
359 360 5.221106 GGCTGATAAATAGTGCATGCAAGAA 60.221 40.000 24.58 11.27 0.00 2.52
360 361 4.276678 GGCTGATAAATAGTGCATGCAAGA 59.723 41.667 24.58 13.91 0.00 3.02
361 362 4.277672 AGGCTGATAAATAGTGCATGCAAG 59.722 41.667 24.58 13.80 0.00 4.01
362 363 4.209538 AGGCTGATAAATAGTGCATGCAA 58.790 39.130 24.58 8.53 0.00 4.08
363 364 3.824133 AGGCTGATAAATAGTGCATGCA 58.176 40.909 18.46 18.46 0.00 3.96
364 365 5.239306 TGTTAGGCTGATAAATAGTGCATGC 59.761 40.000 11.82 11.82 0.00 4.06
365 366 6.567321 GCTGTTAGGCTGATAAATAGTGCATG 60.567 42.308 0.00 0.00 0.00 4.06
366 367 5.471456 GCTGTTAGGCTGATAAATAGTGCAT 59.529 40.000 0.00 0.00 0.00 3.96
367 368 4.816385 GCTGTTAGGCTGATAAATAGTGCA 59.184 41.667 0.00 0.00 0.00 4.57
368 369 4.214332 GGCTGTTAGGCTGATAAATAGTGC 59.786 45.833 0.00 0.00 37.85 4.40
369 370 5.931441 GGCTGTTAGGCTGATAAATAGTG 57.069 43.478 0.00 0.00 37.85 2.74
381 382 1.176527 TTGCATTCAGGCTGTTAGGC 58.823 50.000 15.27 16.61 41.73 3.93
382 383 2.360165 GGATTGCATTCAGGCTGTTAGG 59.640 50.000 15.27 7.01 34.04 2.69
383 384 3.018856 TGGATTGCATTCAGGCTGTTAG 58.981 45.455 15.27 6.44 34.04 2.34
384 385 3.084536 TGGATTGCATTCAGGCTGTTA 57.915 42.857 15.27 4.42 34.04 2.41
385 386 1.927487 TGGATTGCATTCAGGCTGTT 58.073 45.000 15.27 0.24 34.04 3.16
386 387 2.154567 ATGGATTGCATTCAGGCTGT 57.845 45.000 15.27 0.00 34.04 4.40
387 388 3.118920 TGAAATGGATTGCATTCAGGCTG 60.119 43.478 8.58 8.58 34.04 4.85
388 389 3.101437 TGAAATGGATTGCATTCAGGCT 58.899 40.909 10.55 0.00 34.04 4.58
389 390 3.530265 TGAAATGGATTGCATTCAGGC 57.470 42.857 10.55 0.00 0.00 4.85
390 391 4.823157 TGTTGAAATGGATTGCATTCAGG 58.177 39.130 10.55 0.00 0.00 3.86
391 392 9.923143 ATATATGTTGAAATGGATTGCATTCAG 57.077 29.630 10.55 0.00 0.00 3.02
400 401 9.322773 CGCAGATCTATATATGTTGAAATGGAT 57.677 33.333 0.00 0.00 0.00 3.41
401 402 8.531146 TCGCAGATCTATATATGTTGAAATGGA 58.469 33.333 0.00 0.00 0.00 3.41
402 403 8.598924 GTCGCAGATCTATATATGTTGAAATGG 58.401 37.037 0.00 0.00 40.67 3.16
403 404 8.316753 CGTCGCAGATCTATATATGTTGAAATG 58.683 37.037 0.00 0.00 40.67 2.32
404 405 7.489435 CCGTCGCAGATCTATATATGTTGAAAT 59.511 37.037 0.00 0.00 40.67 2.17
405 406 6.806739 CCGTCGCAGATCTATATATGTTGAAA 59.193 38.462 0.00 0.00 40.67 2.69
406 407 6.150474 TCCGTCGCAGATCTATATATGTTGAA 59.850 38.462 0.00 0.00 40.67 2.69
407 408 5.646360 TCCGTCGCAGATCTATATATGTTGA 59.354 40.000 0.00 0.00 40.67 3.18
408 409 5.880341 TCCGTCGCAGATCTATATATGTTG 58.120 41.667 0.00 0.00 40.67 3.33
417 418 1.106944 TGCCATCCGTCGCAGATCTA 61.107 55.000 0.00 0.00 40.67 1.98
421 422 2.032634 GTTTGCCATCCGTCGCAGA 61.033 57.895 0.00 0.00 36.14 4.26
423 424 2.281139 TGTTTGCCATCCGTCGCA 60.281 55.556 0.00 0.00 0.00 5.10
424 425 2.175811 GTGTTTGCCATCCGTCGC 59.824 61.111 0.00 0.00 0.00 5.19
429 430 2.126888 CGTGCGTGTTTGCCATCC 60.127 61.111 0.00 0.00 0.00 3.51
439 440 2.640736 AAGCGTTTGAACCGTGCGTG 62.641 55.000 0.00 0.00 0.00 5.34
455 456 3.011760 CTTCGAACCGTCCGCAAGC 62.012 63.158 0.00 0.00 0.00 4.01
561 592 3.576982 TGGACTTAACTGGTACACTCAGG 59.423 47.826 0.00 0.00 36.62 3.86
589 620 3.581332 AGTGGATTAGAAAGTTCCGTGGA 59.419 43.478 0.00 0.00 31.90 4.02
613 644 3.775654 CCCTCGGGGTGCTGACTC 61.776 72.222 0.00 0.00 38.25 3.36
749 786 0.463116 GGTGTCGTGGTCTTGTGGTT 60.463 55.000 0.00 0.00 0.00 3.67
764 801 2.761160 GGTTTGGGGATCGGGTGT 59.239 61.111 0.00 0.00 0.00 4.16
864 904 3.246880 AAAAGGTCGGGCTCGGGT 61.247 61.111 5.94 0.00 36.95 5.28
903 947 2.434359 GTCGAGAGTTTGGCCCCG 60.434 66.667 0.00 0.00 0.00 5.73
905 949 2.046217 GGGTCGAGAGTTTGGCCC 60.046 66.667 0.00 0.00 45.40 5.80
915 959 0.739813 GTTGGAATGACCGGGTCGAG 60.740 60.000 21.52 0.00 42.61 4.04
943 987 0.382515 TCCTTTTGTTTCGTTGGGCG 59.617 50.000 0.00 0.00 43.01 6.13
944 988 1.269569 CCTCCTTTTGTTTCGTTGGGC 60.270 52.381 0.00 0.00 0.00 5.36
945 989 1.269569 GCCTCCTTTTGTTTCGTTGGG 60.270 52.381 0.00 0.00 0.00 4.12
946 990 1.407258 TGCCTCCTTTTGTTTCGTTGG 59.593 47.619 0.00 0.00 0.00 3.77
947 991 2.459934 GTGCCTCCTTTTGTTTCGTTG 58.540 47.619 0.00 0.00 0.00 4.10
951 995 0.679505 GGGGTGCCTCCTTTTGTTTC 59.320 55.000 0.00 0.00 36.25 2.78
954 998 2.091283 AGGGGGTGCCTCCTTTTGT 61.091 57.895 3.24 0.00 36.25 2.83
963 1007 3.078836 TAGCGTACAGGGGGTGCC 61.079 66.667 0.00 0.00 0.00 5.01
965 1009 2.493030 CGTAGCGTACAGGGGGTG 59.507 66.667 0.00 0.00 0.00 4.61
984 1028 4.323843 ATAGTCGGCCGCGCGTAG 62.324 66.667 29.95 18.83 0.00 3.51
1592 1709 4.819761 GCATCTCGCCGGTGAGCA 62.820 66.667 35.26 24.97 35.90 4.26
1719 1836 3.181440 CCCATACACCAATGCCATACTCT 60.181 47.826 0.00 0.00 0.00 3.24
2025 2142 1.975407 GTCGAGGAACCCGAGGTCA 60.975 63.158 0.00 0.00 40.78 4.02
2064 2181 2.125952 CGTGATCTCCAGCGCACA 60.126 61.111 11.47 0.00 0.00 4.57
2070 2187 0.809241 GCTTGCTCCGTGATCTCCAG 60.809 60.000 0.00 0.00 0.00 3.86
2287 2404 3.937814 ACACATTCTCCTCGTTATGCAA 58.062 40.909 0.00 0.00 0.00 4.08
2299 2416 2.932614 CCCAGACATCGAACACATTCTC 59.067 50.000 0.00 0.00 32.12 2.87
2300 2417 2.567169 TCCCAGACATCGAACACATTCT 59.433 45.455 0.00 0.00 32.12 2.40
2301 2418 2.932614 CTCCCAGACATCGAACACATTC 59.067 50.000 0.00 0.00 0.00 2.67
2348 2476 2.299013 TGTGACTAATCCTCGCACAAGT 59.701 45.455 0.00 0.00 36.63 3.16
2382 2510 3.251484 ACATGTTCCCCTCTTCTCTTGA 58.749 45.455 0.00 0.00 0.00 3.02
2383 2511 3.710209 ACATGTTCCCCTCTTCTCTTG 57.290 47.619 0.00 0.00 0.00 3.02
2388 2810 4.762289 ATCACTACATGTTCCCCTCTTC 57.238 45.455 2.30 0.00 0.00 2.87
2401 2823 4.768448 TCCGTCAAAACCTCTATCACTACA 59.232 41.667 0.00 0.00 0.00 2.74
2439 2861 6.859017 TGGTCATGTCAAAATGATGAGAATG 58.141 36.000 0.00 0.00 38.76 2.67
2440 2862 6.888088 TCTGGTCATGTCAAAATGATGAGAAT 59.112 34.615 0.00 0.00 38.76 2.40
2441 2863 6.240145 TCTGGTCATGTCAAAATGATGAGAA 58.760 36.000 0.00 0.00 38.76 2.87
2442 2864 5.807909 TCTGGTCATGTCAAAATGATGAGA 58.192 37.500 0.00 0.00 38.76 3.27
2443 2865 5.878669 TCTCTGGTCATGTCAAAATGATGAG 59.121 40.000 0.00 0.00 38.76 2.90
2444 2866 5.807909 TCTCTGGTCATGTCAAAATGATGA 58.192 37.500 0.00 0.00 38.76 2.92
2445 2867 6.373495 TCTTCTCTGGTCATGTCAAAATGATG 59.627 38.462 0.00 0.00 38.76 3.07
2446 2868 6.479006 TCTTCTCTGGTCATGTCAAAATGAT 58.521 36.000 0.00 0.00 38.76 2.45
2447 2869 5.868454 TCTTCTCTGGTCATGTCAAAATGA 58.132 37.500 0.00 0.00 34.16 2.57
2448 2870 6.754702 ATCTTCTCTGGTCATGTCAAAATG 57.245 37.500 0.00 0.00 0.00 2.32
2449 2871 6.944290 TGAATCTTCTCTGGTCATGTCAAAAT 59.056 34.615 0.00 0.00 0.00 1.82
2450 2872 6.298361 TGAATCTTCTCTGGTCATGTCAAAA 58.702 36.000 0.00 0.00 0.00 2.44
2451 2873 5.868454 TGAATCTTCTCTGGTCATGTCAAA 58.132 37.500 0.00 0.00 0.00 2.69
2452 2874 5.488262 TGAATCTTCTCTGGTCATGTCAA 57.512 39.130 0.00 0.00 0.00 3.18
2453 2875 5.012458 AGTTGAATCTTCTCTGGTCATGTCA 59.988 40.000 0.00 0.00 0.00 3.58
2454 2876 5.350914 CAGTTGAATCTTCTCTGGTCATGTC 59.649 44.000 0.00 0.00 0.00 3.06
2455 2877 5.221803 ACAGTTGAATCTTCTCTGGTCATGT 60.222 40.000 14.79 0.00 35.70 3.21
2456 2878 5.243981 ACAGTTGAATCTTCTCTGGTCATG 58.756 41.667 14.79 0.00 35.70 3.07
2457 2879 5.012458 TGACAGTTGAATCTTCTCTGGTCAT 59.988 40.000 14.79 1.48 35.70 3.06
2458 2880 4.344968 TGACAGTTGAATCTTCTCTGGTCA 59.655 41.667 14.79 0.00 35.70 4.02
2459 2881 4.688413 GTGACAGTTGAATCTTCTCTGGTC 59.312 45.833 14.79 0.00 35.70 4.02
2486 2908 4.264460 TGGCACCAAACCAATTATGTTC 57.736 40.909 0.00 0.00 33.12 3.18
2487 2909 4.696479 TTGGCACCAAACCAATTATGTT 57.304 36.364 0.00 0.00 42.23 2.71
2488 2910 4.696479 TTTGGCACCAAACCAATTATGT 57.304 36.364 10.79 0.00 46.25 2.29
2489 2911 6.572167 ATTTTTGGCACCAAACCAATTATG 57.428 33.333 14.31 0.00 46.25 1.90
2490 2912 6.015603 CCAATTTTTGGCACCAAACCAATTAT 60.016 34.615 14.31 0.00 46.25 1.28
2493 2915 3.635836 CCAATTTTTGGCACCAAACCAAT 59.364 39.130 14.31 9.77 46.25 3.16
2520 2942 2.696409 TGGCACAACGCAAGCATTGG 62.696 55.000 5.82 0.00 41.33 3.16
2521 2943 1.300003 TGGCACAACGCAAGCATTG 60.300 52.632 0.00 0.00 43.57 2.82
2522 2944 3.127451 TGGCACAACGCAAGCATT 58.873 50.000 0.00 0.00 45.17 3.56
2542 2964 9.275398 CGGTAACCAATTAAGTTATAGCCAATA 57.725 33.333 4.16 0.00 32.62 1.90
2543 2965 7.994334 TCGGTAACCAATTAAGTTATAGCCAAT 59.006 33.333 4.16 0.00 32.62 3.16
2544 2966 7.337167 TCGGTAACCAATTAAGTTATAGCCAA 58.663 34.615 4.16 0.00 32.62 4.52
2545 2967 6.887013 TCGGTAACCAATTAAGTTATAGCCA 58.113 36.000 4.16 0.00 32.62 4.75
2546 2968 6.988580 ACTCGGTAACCAATTAAGTTATAGCC 59.011 38.462 4.16 1.59 32.62 3.93
2547 2969 8.333186 CAACTCGGTAACCAATTAAGTTATAGC 58.667 37.037 4.16 0.00 32.62 2.97
2548 2970 9.374838 ACAACTCGGTAACCAATTAAGTTATAG 57.625 33.333 4.16 5.40 32.62 1.31
2549 2971 9.723601 AACAACTCGGTAACCAATTAAGTTATA 57.276 29.630 4.16 0.00 32.62 0.98
2550 2972 8.625786 AACAACTCGGTAACCAATTAAGTTAT 57.374 30.769 4.16 0.00 32.62 1.89
2551 2973 8.449251 AAACAACTCGGTAACCAATTAAGTTA 57.551 30.769 0.00 0.00 0.00 2.24
2552 2974 6.947644 AACAACTCGGTAACCAATTAAGTT 57.052 33.333 0.00 0.00 0.00 2.66
2553 2975 6.947644 AAACAACTCGGTAACCAATTAAGT 57.052 33.333 0.00 0.00 0.00 2.24
2554 2976 6.143278 GCAAAACAACTCGGTAACCAATTAAG 59.857 38.462 0.00 0.00 0.00 1.85
2555 2977 5.978322 GCAAAACAACTCGGTAACCAATTAA 59.022 36.000 0.00 0.00 0.00 1.40
2556 2978 5.507650 GGCAAAACAACTCGGTAACCAATTA 60.508 40.000 0.00 0.00 0.00 1.40
2557 2979 4.364860 GCAAAACAACTCGGTAACCAATT 58.635 39.130 0.00 0.00 0.00 2.32
2558 2980 3.243602 GGCAAAACAACTCGGTAACCAAT 60.244 43.478 0.00 0.00 0.00 3.16
2559 2981 2.099427 GGCAAAACAACTCGGTAACCAA 59.901 45.455 0.00 0.00 0.00 3.67
2560 2982 1.677052 GGCAAAACAACTCGGTAACCA 59.323 47.619 0.00 0.00 0.00 3.67
2561 2983 1.001048 GGGCAAAACAACTCGGTAACC 60.001 52.381 0.00 0.00 0.00 2.85
2562 2984 1.677052 TGGGCAAAACAACTCGGTAAC 59.323 47.619 0.00 0.00 0.00 2.50
2563 2985 2.054232 TGGGCAAAACAACTCGGTAA 57.946 45.000 0.00 0.00 0.00 2.85
2564 2986 2.156098 GATGGGCAAAACAACTCGGTA 58.844 47.619 0.00 0.00 0.00 4.02
2565 2987 0.958822 GATGGGCAAAACAACTCGGT 59.041 50.000 0.00 0.00 0.00 4.69
2566 2988 1.200020 GAGATGGGCAAAACAACTCGG 59.800 52.381 0.00 0.00 29.99 4.63
2567 2989 1.879380 TGAGATGGGCAAAACAACTCG 59.121 47.619 0.00 0.00 39.68 4.18
2568 2990 5.841957 ATATGAGATGGGCAAAACAACTC 57.158 39.130 0.00 0.00 38.00 3.01
2569 2991 7.397192 ACTTTATATGAGATGGGCAAAACAACT 59.603 33.333 0.00 0.00 0.00 3.16
2570 2992 7.547227 ACTTTATATGAGATGGGCAAAACAAC 58.453 34.615 0.00 0.00 0.00 3.32
2571 2993 7.716799 ACTTTATATGAGATGGGCAAAACAA 57.283 32.000 0.00 0.00 0.00 2.83
2572 2994 7.546358 CAACTTTATATGAGATGGGCAAAACA 58.454 34.615 0.00 0.00 0.00 2.83
2573 2995 6.476706 GCAACTTTATATGAGATGGGCAAAAC 59.523 38.462 0.00 0.00 0.00 2.43
2574 2996 6.406849 GGCAACTTTATATGAGATGGGCAAAA 60.407 38.462 0.00 0.00 0.00 2.44
2575 2997 5.068987 GGCAACTTTATATGAGATGGGCAAA 59.931 40.000 0.00 0.00 0.00 3.68
2576 2998 4.584325 GGCAACTTTATATGAGATGGGCAA 59.416 41.667 0.00 0.00 0.00 4.52
2577 2999 4.144297 GGCAACTTTATATGAGATGGGCA 58.856 43.478 0.00 0.00 0.00 5.36
2578 3000 4.144297 TGGCAACTTTATATGAGATGGGC 58.856 43.478 0.00 0.00 37.61 5.36
2579 3001 6.906157 ATTGGCAACTTTATATGAGATGGG 57.094 37.500 0.00 0.00 37.61 4.00
2599 3021 7.322664 ACAATACCAAGACTTGCCAATTATTG 58.677 34.615 9.85 15.64 32.89 1.90
2600 3022 7.178274 TGACAATACCAAGACTTGCCAATTATT 59.822 33.333 9.85 4.60 0.00 1.40
2601 3023 6.663093 TGACAATACCAAGACTTGCCAATTAT 59.337 34.615 9.85 0.00 0.00 1.28
2602 3024 6.007076 TGACAATACCAAGACTTGCCAATTA 58.993 36.000 9.85 0.00 0.00 1.40
2603 3025 4.832266 TGACAATACCAAGACTTGCCAATT 59.168 37.500 9.85 5.99 0.00 2.32
2604 3026 4.406456 TGACAATACCAAGACTTGCCAAT 58.594 39.130 9.85 0.06 0.00 3.16
2605 3027 3.826524 TGACAATACCAAGACTTGCCAA 58.173 40.909 9.85 0.00 0.00 4.52
2606 3028 3.500448 TGACAATACCAAGACTTGCCA 57.500 42.857 9.85 0.00 0.00 4.92
2607 3029 6.699575 ATATTGACAATACCAAGACTTGCC 57.300 37.500 10.06 0.00 0.00 4.52
2608 3030 7.489113 CCAAATATTGACAATACCAAGACTTGC 59.511 37.037 10.06 0.00 0.00 4.01
2609 3031 7.489113 GCCAAATATTGACAATACCAAGACTTG 59.511 37.037 10.06 8.31 0.00 3.16
2610 3032 7.547227 GCCAAATATTGACAATACCAAGACTT 58.453 34.615 10.06 0.00 0.00 3.01
2611 3033 6.183360 CGCCAAATATTGACAATACCAAGACT 60.183 38.462 10.06 0.00 0.00 3.24
2612 3034 5.971202 CGCCAAATATTGACAATACCAAGAC 59.029 40.000 10.06 0.00 0.00 3.01
2613 3035 5.883115 TCGCCAAATATTGACAATACCAAGA 59.117 36.000 10.06 3.63 0.00 3.02
2614 3036 6.130298 TCGCCAAATATTGACAATACCAAG 57.870 37.500 10.06 2.18 0.00 3.61
2615 3037 6.502652 CATCGCCAAATATTGACAATACCAA 58.497 36.000 10.06 0.00 0.00 3.67
2616 3038 5.507149 GCATCGCCAAATATTGACAATACCA 60.507 40.000 10.06 0.00 0.00 3.25
2617 3039 4.917415 GCATCGCCAAATATTGACAATACC 59.083 41.667 10.06 0.00 0.00 2.73
2648 3070 2.754552 GAGTATGATTGGTTTGCTGCCA 59.245 45.455 0.00 0.00 0.00 4.92
2649 3071 3.019564 AGAGTATGATTGGTTTGCTGCC 58.980 45.455 0.00 0.00 0.00 4.85
2650 3072 5.818136 TTAGAGTATGATTGGTTTGCTGC 57.182 39.130 0.00 0.00 0.00 5.25
2651 3073 7.383102 AGTTTAGAGTATGATTGGTTTGCTG 57.617 36.000 0.00 0.00 0.00 4.41
2652 3074 7.448469 ACAAGTTTAGAGTATGATTGGTTTGCT 59.552 33.333 0.00 0.00 0.00 3.91
2653 3075 7.593825 ACAAGTTTAGAGTATGATTGGTTTGC 58.406 34.615 0.00 0.00 0.00 3.68
2712 3134 7.404671 AGAATTTACAACAAAGGTGTCTGTT 57.595 32.000 0.00 0.00 36.80 3.16
2730 3152 8.352942 GGTAGTCATTGAAGTCACAAAGAATTT 58.647 33.333 0.00 0.00 40.26 1.82
2740 3162 4.350368 TGCTTGGTAGTCATTGAAGTCA 57.650 40.909 0.00 0.00 0.00 3.41
2743 3165 8.461222 TCAATATTTGCTTGGTAGTCATTGAAG 58.539 33.333 0.00 0.00 0.00 3.02
2752 3174 4.580580 GGAGGGTCAATATTTGCTTGGTAG 59.419 45.833 0.00 0.00 0.00 3.18
2764 3186 7.773224 CAGTTTGTATTGTATGGAGGGTCAATA 59.227 37.037 0.00 0.00 33.48 1.90
2831 3276 6.362210 TCGCCGTAAACCCTAAAATAAATC 57.638 37.500 0.00 0.00 0.00 2.17
2848 3293 0.586319 CACTGAACAAACATCGCCGT 59.414 50.000 0.00 0.00 0.00 5.68
2859 3304 4.160329 AGAACATCTACTCCCACTGAACA 58.840 43.478 0.00 0.00 0.00 3.18
2868 3313 4.705337 AGTCAACGAGAACATCTACTCC 57.295 45.455 0.00 0.00 0.00 3.85
2869 3314 7.011576 TCTCATAGTCAACGAGAACATCTACTC 59.988 40.741 0.00 0.00 32.96 2.59
2891 3336 2.991866 CGTAGTCACTACAGACGTCTCA 59.008 50.000 16.96 5.61 43.24 3.27
2932 3377 6.360370 AGCACCTCTAAAATACTGAGTTGA 57.640 37.500 0.00 0.00 0.00 3.18
2935 3380 8.643324 CCTATAAGCACCTCTAAAATACTGAGT 58.357 37.037 0.00 0.00 0.00 3.41
2948 3393 4.589374 ACACACTATCCCTATAAGCACCTC 59.411 45.833 0.00 0.00 0.00 3.85
2966 3411 4.696172 GCGCACGCACGTACACAC 62.696 66.667 10.65 0.00 41.49 3.82
2972 3417 2.431771 TTATGAGCGCACGCACGT 60.432 55.556 18.24 14.66 44.88 4.49
3086 3564 4.772100 CCCACAAACATAGGAAATTCACCT 59.228 41.667 8.78 8.78 41.05 4.00
3087 3565 4.526650 ACCCACAAACATAGGAAATTCACC 59.473 41.667 0.00 0.00 0.00 4.02
3220 3699 5.105063 GGAGGACATGCTTAAAATTCAAGC 58.895 41.667 14.73 14.73 46.90 4.01
3221 3700 5.654497 GGGAGGACATGCTTAAAATTCAAG 58.346 41.667 0.00 0.00 0.00 3.02
3222 3701 4.157656 CGGGAGGACATGCTTAAAATTCAA 59.842 41.667 0.00 0.00 0.00 2.69
3223 3702 3.694072 CGGGAGGACATGCTTAAAATTCA 59.306 43.478 0.00 0.00 0.00 2.57
3224 3703 3.945285 TCGGGAGGACATGCTTAAAATTC 59.055 43.478 0.00 0.00 0.00 2.17
3225 3704 3.963129 TCGGGAGGACATGCTTAAAATT 58.037 40.909 0.00 0.00 0.00 1.82
3226 3705 3.644966 TCGGGAGGACATGCTTAAAAT 57.355 42.857 0.00 0.00 0.00 1.82
3227 3706 3.078837 GTTCGGGAGGACATGCTTAAAA 58.921 45.455 0.00 0.00 38.59 1.52
3228 3707 2.706890 GTTCGGGAGGACATGCTTAAA 58.293 47.619 0.00 0.00 38.59 1.52
3229 3708 1.404986 CGTTCGGGAGGACATGCTTAA 60.405 52.381 0.00 0.00 38.67 1.85
3230 3709 0.174845 CGTTCGGGAGGACATGCTTA 59.825 55.000 0.00 0.00 38.67 3.09
3231 3710 1.079127 CGTTCGGGAGGACATGCTT 60.079 57.895 0.00 0.00 38.67 3.91
3232 3711 1.827399 AACGTTCGGGAGGACATGCT 61.827 55.000 0.00 0.00 38.67 3.79
3233 3712 0.953960 AAACGTTCGGGAGGACATGC 60.954 55.000 0.00 0.00 38.67 4.06
3234 3713 1.519408 AAAACGTTCGGGAGGACATG 58.481 50.000 0.00 0.00 38.67 3.21
3235 3714 2.148768 GAAAAACGTTCGGGAGGACAT 58.851 47.619 0.00 0.00 38.67 3.06
3236 3715 1.139455 AGAAAAACGTTCGGGAGGACA 59.861 47.619 0.00 0.00 38.67 4.02
3237 3716 1.875009 AGAAAAACGTTCGGGAGGAC 58.125 50.000 0.00 0.00 34.02 3.85
3238 3717 2.625695 AAGAAAAACGTTCGGGAGGA 57.374 45.000 0.00 0.00 0.00 3.71
3239 3718 3.811497 ACTAAAGAAAAACGTTCGGGAGG 59.189 43.478 0.00 0.00 0.00 4.30
3240 3719 5.202640 CAACTAAAGAAAAACGTTCGGGAG 58.797 41.667 0.00 0.00 0.00 4.30
3241 3720 4.635324 ACAACTAAAGAAAAACGTTCGGGA 59.365 37.500 0.00 0.00 0.00 5.14
3242 3721 4.912214 ACAACTAAAGAAAAACGTTCGGG 58.088 39.130 0.00 0.00 0.00 5.14
3243 3722 7.951706 TTAACAACTAAAGAAAAACGTTCGG 57.048 32.000 0.00 0.00 0.00 4.30
3244 3723 9.647567 GTTTTAACAACTAAAGAAAAACGTTCG 57.352 29.630 0.00 0.00 31.12 3.95
3249 3728 9.927324 GTCGTGTTTTAACAACTAAAGAAAAAC 57.073 29.630 0.00 0.00 41.21 2.43
3311 3791 0.039256 CGTGAGGTTGGCAAACATGG 60.039 55.000 18.93 0.00 38.10 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.