Multiple sequence alignment - TraesCS6B01G248400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G248400 chr6B 100.000 3239 0 0 1 3239 445851257 445854495 0.000000e+00 5982.0
1 TraesCS6B01G248400 chr6B 96.875 32 1 0 2678 2709 42807663 42807694 2.000000e-03 54.7
2 TraesCS6B01G248400 chr6A 91.758 2657 105 22 58 2612 405165780 405168424 0.000000e+00 3589.0
3 TraesCS6B01G248400 chr6A 92.258 310 21 2 2720 3028 539714710 539715017 1.380000e-118 436.0
4 TraesCS6B01G248400 chr6A 97.170 106 2 1 3134 3239 405168427 405168531 9.230000e-41 178.0
5 TraesCS6B01G248400 chr6A 90.244 41 4 0 2676 2716 427619727 427619767 2.000000e-03 54.7
6 TraesCS6B01G248400 chr6D 92.449 1629 67 16 742 2323 284849455 284851074 0.000000e+00 2276.0
7 TraesCS6B01G248400 chr6D 92.330 704 42 5 61 755 284848738 284849438 0.000000e+00 990.0
8 TraesCS6B01G248400 chr6D 89.030 237 16 4 2383 2609 284851864 284852100 5.290000e-73 285.0
9 TraesCS6B01G248400 chr6D 95.283 106 5 0 3134 3239 284853267 284853372 5.560000e-38 169.0
10 TraesCS6B01G248400 chr5A 92.405 316 22 1 2709 3024 566643470 566643157 1.770000e-122 449.0
11 TraesCS6B01G248400 chr5A 92.484 306 21 1 2720 3025 537659906 537660209 1.380000e-118 436.0
12 TraesCS6B01G248400 chr5A 88.000 100 11 1 3024 3122 216994781 216994682 2.040000e-22 117.0
13 TraesCS6B01G248400 chr5A 88.542 96 10 1 3028 3122 429121792 429121887 7.340000e-22 115.0
14 TraesCS6B01G248400 chr1A 92.787 305 21 1 2720 3024 272091374 272091677 1.070000e-119 440.0
15 TraesCS6B01G248400 chr1A 100.000 34 0 0 2676 2709 118850901 118850868 2.700000e-06 63.9
16 TraesCS6B01G248400 chr7D 92.258 310 22 1 2716 3025 16730869 16730562 3.840000e-119 438.0
17 TraesCS6B01G248400 chr7D 94.118 68 4 0 2608 2675 47107572 47107639 1.590000e-18 104.0
18 TraesCS6B01G248400 chr4D 92.258 310 21 2 2716 3025 334108105 334108411 1.380000e-118 436.0
19 TraesCS6B01G248400 chr4D 94.030 67 4 0 2609 2675 3381089 3381155 5.720000e-18 102.0
20 TraesCS6B01G248400 chr5B 92.459 305 21 2 2720 3024 508786154 508786456 4.960000e-118 435.0
21 TraesCS6B01G248400 chr5B 87.129 101 11 1 3024 3122 105778755 105778655 2.640000e-21 113.0
22 TraesCS6B01G248400 chr4A 91.987 312 22 2 2714 3024 518619466 518619775 4.960000e-118 435.0
23 TraesCS6B01G248400 chr4A 88.000 100 11 1 3024 3122 483944791 483944890 2.040000e-22 117.0
24 TraesCS6B01G248400 chr3A 92.208 308 22 1 2717 3024 579138477 579138782 4.960000e-118 435.0
25 TraesCS6B01G248400 chr3A 91.667 72 6 0 2604 2675 644894990 644895061 2.060000e-17 100.0
26 TraesCS6B01G248400 chr2A 77.504 609 104 26 1130 1724 594580325 594580914 5.180000e-88 335.0
27 TraesCS6B01G248400 chr2A 89.595 173 17 1 1871 2043 594581043 594581214 5.440000e-53 219.0
28 TraesCS6B01G248400 chr2B 77.250 611 111 20 1130 1724 530306564 530307162 1.860000e-87 333.0
29 TraesCS6B01G248400 chr2B 88.636 176 18 2 1871 2045 530307285 530307459 2.530000e-51 213.0
30 TraesCS6B01G248400 chr2B 89.583 96 9 1 3028 3122 141154091 141153996 1.580000e-23 121.0
31 TraesCS6B01G248400 chr2D 76.923 611 113 20 1130 1724 450234895 450235493 4.030000e-84 322.0
32 TraesCS6B01G248400 chr3B 93.902 82 5 0 3024 3105 11903652 11903571 1.220000e-24 124.0
33 TraesCS6B01G248400 chr3B 88.350 103 10 2 3024 3125 596964656 596964555 4.390000e-24 122.0
34 TraesCS6B01G248400 chr5D 88.119 101 9 3 3024 3122 499691928 499691829 2.040000e-22 117.0
35 TraesCS6B01G248400 chr5D 94.030 67 4 0 2608 2674 385549482 385549548 5.720000e-18 102.0
36 TraesCS6B01G248400 chr5D 89.474 76 8 0 2600 2675 193047035 193046960 2.660000e-16 97.1
37 TraesCS6B01G248400 chr4B 88.000 100 10 2 3028 3127 666327550 666327647 2.040000e-22 117.0
38 TraesCS6B01G248400 chr4B 94.203 69 4 0 2607 2675 33742626 33742558 4.420000e-19 106.0
39 TraesCS6B01G248400 chr1B 95.522 67 3 0 2609 2675 589076451 589076385 1.230000e-19 108.0
40 TraesCS6B01G248400 chr7A 92.958 71 5 0 2605 2675 265203912 265203982 1.590000e-18 104.0
41 TraesCS6B01G248400 chr7A 94.030 67 4 0 2609 2675 726262844 726262910 5.720000e-18 102.0
42 TraesCS6B01G248400 chr1D 100.000 34 0 0 2676 2709 111851169 111851136 2.700000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G248400 chr6B 445851257 445854495 3238 False 5982.0 5982 100.0000 1 3239 1 chr6B.!!$F2 3238
1 TraesCS6B01G248400 chr6A 405165780 405168531 2751 False 1883.5 3589 94.4640 58 3239 2 chr6A.!!$F3 3181
2 TraesCS6B01G248400 chr6D 284848738 284853372 4634 False 930.0 2276 92.2730 61 3239 4 chr6D.!!$F1 3178
3 TraesCS6B01G248400 chr2A 594580325 594581214 889 False 277.0 335 83.5495 1130 2043 2 chr2A.!!$F1 913
4 TraesCS6B01G248400 chr2B 530306564 530307459 895 False 273.0 333 82.9430 1130 2045 2 chr2B.!!$F1 915
5 TraesCS6B01G248400 chr2D 450234895 450235493 598 False 322.0 322 76.9230 1130 1724 1 chr2D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.736325 CACCCGGACAAGATGACGTC 60.736 60.0 9.11 9.11 0.0 4.34 F
858 919 0.748729 TTGGCAAACGAACGAACCCT 60.749 50.0 0.00 0.00 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2079 0.738975 CGTAGCGGATGGTCTTCTGA 59.261 55.0 0.0 0.0 0.00 3.27 R
2514 3404 0.787787 TCGCATCGAAAGTTGTTCCG 59.212 50.0 0.0 0.0 31.06 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.138884 TGTTTTACCCTAAACGGACCC 57.861 47.619 0.00 0.00 40.14 4.46
21 22 2.441001 TGTTTTACCCTAAACGGACCCA 59.559 45.455 0.00 0.00 40.14 4.51
22 23 2.813754 GTTTTACCCTAAACGGACCCAC 59.186 50.000 0.00 0.00 33.16 4.61
23 24 0.983467 TTACCCTAAACGGACCCACC 59.017 55.000 0.00 0.00 33.16 4.61
24 25 0.909133 TACCCTAAACGGACCCACCC 60.909 60.000 0.00 0.00 34.64 4.61
31 32 4.388499 CGGACCCACCCGGACAAG 62.388 72.222 0.73 0.00 45.43 3.16
32 33 2.926242 GGACCCACCCGGACAAGA 60.926 66.667 0.73 0.00 34.64 3.02
33 34 2.298661 GGACCCACCCGGACAAGAT 61.299 63.158 0.73 0.00 34.64 2.40
34 35 1.078426 GACCCACCCGGACAAGATG 60.078 63.158 0.73 0.00 34.64 2.90
35 36 1.537889 ACCCACCCGGACAAGATGA 60.538 57.895 0.73 0.00 34.64 2.92
36 37 1.078426 CCCACCCGGACAAGATGAC 60.078 63.158 0.73 0.00 0.00 3.06
37 38 1.447838 CCACCCGGACAAGATGACG 60.448 63.158 0.73 0.00 0.00 4.35
38 39 1.292223 CACCCGGACAAGATGACGT 59.708 57.895 0.73 0.00 0.00 4.34
39 40 0.736325 CACCCGGACAAGATGACGTC 60.736 60.000 9.11 9.11 0.00 4.34
40 41 1.516386 CCCGGACAAGATGACGTCG 60.516 63.158 11.62 0.00 32.74 5.12
41 42 2.158959 CCGGACAAGATGACGTCGC 61.159 63.158 11.62 5.56 32.74 5.19
42 43 2.497092 CGGACAAGATGACGTCGCG 61.497 63.158 11.62 0.00 32.74 5.87
43 44 2.689766 GACAAGATGACGTCGCGC 59.310 61.111 11.62 0.00 0.00 6.86
45 46 3.902063 CAAGATGACGTCGCGCGG 61.902 66.667 31.69 17.77 46.52 6.46
46 47 4.415332 AAGATGACGTCGCGCGGT 62.415 61.111 31.69 21.34 46.52 5.68
63 64 1.691976 CGGTGGAGTTGGCCTCATATA 59.308 52.381 3.32 0.00 42.40 0.86
81 82 3.991318 GCCCACCAACCATCCCCA 61.991 66.667 0.00 0.00 0.00 4.96
300 308 4.838152 CCGTCGCATCCCCACCTG 62.838 72.222 0.00 0.00 0.00 4.00
360 369 1.134580 GGACCCGCCTACTACTTTTCC 60.135 57.143 0.00 0.00 0.00 3.13
538 562 1.291877 GCTCGCACCAAACGTCTCAT 61.292 55.000 0.00 0.00 0.00 2.90
627 651 2.354510 CAGCTGACGTGAACCAAAAAGA 59.645 45.455 8.42 0.00 0.00 2.52
641 665 0.815095 AAAAGATTTTAGGCCGCCGG 59.185 50.000 0.00 0.00 0.00 6.13
664 688 2.689983 CTGGAACTGAAACTTTGGTGCT 59.310 45.455 0.00 0.00 0.00 4.40
673 697 4.276678 TGAAACTTTGGTGCTCAGAATCAG 59.723 41.667 0.00 0.00 0.00 2.90
733 757 0.930310 CGACTGTGGAATGGTATGCG 59.070 55.000 0.00 0.00 0.00 4.73
823 884 9.908152 AGCTCGTAAAATAAGCTTGTTTTTAAT 57.092 25.926 30.68 15.07 43.67 1.40
852 913 1.196200 CCAAGTTTGGCAAACGAACG 58.804 50.000 30.94 21.42 46.22 3.95
853 914 1.202200 CCAAGTTTGGCAAACGAACGA 60.202 47.619 30.94 0.00 46.22 3.85
854 915 2.520979 CAAGTTTGGCAAACGAACGAA 58.479 42.857 30.94 0.00 46.22 3.85
858 919 0.748729 TTGGCAAACGAACGAACCCT 60.749 50.000 0.00 0.00 0.00 4.34
1487 1573 4.819761 GCGATGCAGGAGGACGCA 62.820 66.667 0.00 0.00 46.75 5.24
1497 1583 2.962827 GAGGACGCAGACGACGACA 61.963 63.158 0.00 0.00 43.93 4.35
1740 1841 3.799420 CGTAAGCCTTTCTGACATAGCTC 59.201 47.826 0.00 0.00 0.00 4.09
1741 1842 2.593346 AGCCTTTCTGACATAGCTCG 57.407 50.000 0.00 0.00 0.00 5.03
1742 1843 1.827969 AGCCTTTCTGACATAGCTCGT 59.172 47.619 0.00 0.00 0.00 4.18
1744 1845 2.159170 GCCTTTCTGACATAGCTCGTCT 60.159 50.000 15.15 0.00 34.37 4.18
1745 1846 3.701241 CCTTTCTGACATAGCTCGTCTC 58.299 50.000 15.15 0.00 34.37 3.36
1746 1847 3.129462 CCTTTCTGACATAGCTCGTCTCA 59.871 47.826 15.15 1.50 34.37 3.27
1755 1866 1.719600 AGCTCGTCTCACTGAAATGC 58.280 50.000 0.00 0.00 0.00 3.56
1830 1947 1.007734 GTCAACGTCTGAGGTCGCA 60.008 57.895 3.19 0.00 33.60 5.10
1962 2079 3.656045 CGCAAGAACCGGCGGTTT 61.656 61.111 41.01 27.93 46.95 3.27
2253 2401 6.548321 ACAGTTTTGTTCCATGGGATTAGTA 58.452 36.000 13.02 0.00 32.28 1.82
2269 2417 3.740397 TACCGTGACCGTGCCGAG 61.740 66.667 0.00 0.00 0.00 4.63
2368 3094 0.537143 AGTTGGGCGTTGAAGCATCA 60.537 50.000 0.00 0.00 39.27 3.07
2462 3348 1.675310 TGCTCCAAGCGTGGGATTG 60.675 57.895 19.08 7.97 46.26 2.67
2494 3384 6.907741 TCATCGAACAGATTTAACAAATGCA 58.092 32.000 0.00 0.00 37.52 3.96
2498 3388 6.428465 TCGAACAGATTTAACAAATGCAGGTA 59.572 34.615 0.00 0.00 0.00 3.08
2570 3469 0.595095 CAACTTTGCTGTGGAGAGGC 59.405 55.000 0.00 0.00 0.00 4.70
2571 3470 0.183492 AACTTTGCTGTGGAGAGGCA 59.817 50.000 0.00 0.00 0.00 4.75
2612 3512 4.058124 TCACTGAACACTGAAGCATGTAC 58.942 43.478 0.00 0.00 0.00 2.90
2614 3514 4.151335 CACTGAACACTGAAGCATGTACTC 59.849 45.833 0.00 0.00 0.00 2.59
2615 3515 3.664107 TGAACACTGAAGCATGTACTCC 58.336 45.455 0.00 0.00 0.00 3.85
2616 3516 2.770164 ACACTGAAGCATGTACTCCC 57.230 50.000 0.00 0.00 0.00 4.30
2617 3517 2.260822 ACACTGAAGCATGTACTCCCT 58.739 47.619 0.00 0.00 0.00 4.20
2618 3518 2.234908 ACACTGAAGCATGTACTCCCTC 59.765 50.000 0.00 0.00 0.00 4.30
2619 3519 1.834263 ACTGAAGCATGTACTCCCTCC 59.166 52.381 0.00 0.00 0.00 4.30
2620 3520 0.824109 TGAAGCATGTACTCCCTCCG 59.176 55.000 0.00 0.00 0.00 4.63
2622 3522 1.207329 GAAGCATGTACTCCCTCCGTT 59.793 52.381 0.00 0.00 0.00 4.44
2623 3523 1.276622 AGCATGTACTCCCTCCGTTT 58.723 50.000 0.00 0.00 0.00 3.60
2624 3524 1.207329 AGCATGTACTCCCTCCGTTTC 59.793 52.381 0.00 0.00 0.00 2.78
2625 3525 1.207329 GCATGTACTCCCTCCGTTTCT 59.793 52.381 0.00 0.00 0.00 2.52
2627 3527 3.868754 GCATGTACTCCCTCCGTTTCTTT 60.869 47.826 0.00 0.00 0.00 2.52
2628 3528 4.324267 CATGTACTCCCTCCGTTTCTTTT 58.676 43.478 0.00 0.00 0.00 2.27
2631 3531 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
2632 3532 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
2633 3533 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
2634 3534 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
2635 3535 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
2636 3536 4.102054 TCCCTCCGTTTCTTTTTAGTCTGT 59.898 41.667 0.00 0.00 0.00 3.41
2637 3537 5.305128 TCCCTCCGTTTCTTTTTAGTCTGTA 59.695 40.000 0.00 0.00 0.00 2.74
2638 3538 6.013984 TCCCTCCGTTTCTTTTTAGTCTGTAT 60.014 38.462 0.00 0.00 0.00 2.29
2639 3539 7.178983 TCCCTCCGTTTCTTTTTAGTCTGTATA 59.821 37.037 0.00 0.00 0.00 1.47
2640 3540 7.985752 CCCTCCGTTTCTTTTTAGTCTGTATAT 59.014 37.037 0.00 0.00 0.00 0.86
2678 3578 9.593134 AAAGTCATACTTTGTTAAATTTGTGCA 57.407 25.926 0.00 0.00 45.83 4.57
2679 3579 9.762933 AAGTCATACTTTGTTAAATTTGTGCAT 57.237 25.926 0.00 0.00 34.11 3.96
2680 3580 9.410556 AGTCATACTTTGTTAAATTTGTGCATC 57.589 29.630 0.00 0.00 0.00 3.91
2681 3581 9.190858 GTCATACTTTGTTAAATTTGTGCATCA 57.809 29.630 0.00 0.00 0.00 3.07
2682 3582 9.926158 TCATACTTTGTTAAATTTGTGCATCAT 57.074 25.926 0.00 0.00 0.00 2.45
2683 3583 9.961266 CATACTTTGTTAAATTTGTGCATCATG 57.039 29.630 0.00 0.00 0.00 3.07
2685 3585 8.659925 ACTTTGTTAAATTTGTGCATCATGAA 57.340 26.923 0.00 0.00 0.00 2.57
2724 3624 9.203163 ACTATATAACTCCAGTATTATGGCTCC 57.797 37.037 0.00 0.00 40.41 4.70
2731 3631 6.126361 ACTCCAGTATTATGGCTCCTTTGATT 60.126 38.462 0.00 0.00 40.41 2.57
2735 3635 7.068593 CCAGTATTATGGCTCCTTTGATTCAAA 59.931 37.037 11.19 11.19 32.48 2.69
2749 3649 7.953005 TTTGATTCAAAGGTATTGCATAGGA 57.047 32.000 7.74 0.00 0.00 2.94
2751 3651 8.537728 TTGATTCAAAGGTATTGCATAGGATT 57.462 30.769 0.00 0.00 0.00 3.01
2752 3652 8.537728 TGATTCAAAGGTATTGCATAGGATTT 57.462 30.769 0.00 0.00 0.00 2.17
2753 3653 8.980596 TGATTCAAAGGTATTGCATAGGATTTT 58.019 29.630 0.00 0.00 0.00 1.82
2754 3654 9.822185 GATTCAAAGGTATTGCATAGGATTTTT 57.178 29.630 0.00 0.00 0.00 1.94
2755 3655 9.603921 ATTCAAAGGTATTGCATAGGATTTTTG 57.396 29.630 0.00 0.00 0.00 2.44
2757 3657 7.398618 TCAAAGGTATTGCATAGGATTTTTGGA 59.601 33.333 0.00 0.00 0.00 3.53
2759 3659 5.835280 AGGTATTGCATAGGATTTTTGGAGG 59.165 40.000 0.00 0.00 0.00 4.30
2760 3660 5.833131 GGTATTGCATAGGATTTTTGGAGGA 59.167 40.000 0.00 0.00 0.00 3.71
2761 3661 6.494835 GGTATTGCATAGGATTTTTGGAGGAT 59.505 38.462 0.00 0.00 0.00 3.24
2762 3662 7.015584 GGTATTGCATAGGATTTTTGGAGGATT 59.984 37.037 0.00 0.00 0.00 3.01
2763 3663 6.469782 TTGCATAGGATTTTTGGAGGATTC 57.530 37.500 0.00 0.00 0.00 2.52
2764 3664 4.580167 TGCATAGGATTTTTGGAGGATTCG 59.420 41.667 0.00 0.00 0.00 3.34
2765 3665 4.821805 GCATAGGATTTTTGGAGGATTCGA 59.178 41.667 0.00 0.00 0.00 3.71
2766 3666 5.299279 GCATAGGATTTTTGGAGGATTCGAA 59.701 40.000 0.00 0.00 0.00 3.71
2768 3668 4.017126 AGGATTTTTGGAGGATTCGAACC 58.983 43.478 0.00 4.22 0.00 3.62
2770 3670 3.518992 TTTTTGGAGGATTCGAACCCT 57.481 42.857 12.11 12.11 35.02 4.34
2771 3671 3.518992 TTTTGGAGGATTCGAACCCTT 57.481 42.857 13.76 0.00 31.84 3.95
2772 3672 4.644163 TTTTGGAGGATTCGAACCCTTA 57.356 40.909 13.76 2.09 31.84 2.69
2773 3673 3.906720 TTGGAGGATTCGAACCCTTAG 57.093 47.619 13.76 0.00 31.84 2.18
2774 3674 2.116238 TGGAGGATTCGAACCCTTAGG 58.884 52.381 13.76 0.00 40.04 2.69
2776 3676 2.770232 GGAGGATTCGAACCCTTAGGAA 59.230 50.000 13.76 0.00 36.73 3.36
2777 3677 3.391626 GGAGGATTCGAACCCTTAGGAAT 59.608 47.826 13.76 0.00 36.73 3.01
2779 3679 5.437946 GAGGATTCGAACCCTTAGGAATTT 58.562 41.667 13.76 0.00 36.73 1.82
2780 3680 5.827756 AGGATTCGAACCCTTAGGAATTTT 58.172 37.500 4.78 0.00 36.73 1.82
2781 3681 6.253758 AGGATTCGAACCCTTAGGAATTTTT 58.746 36.000 4.78 0.00 36.73 1.94
2782 3682 6.377429 AGGATTCGAACCCTTAGGAATTTTTC 59.623 38.462 4.78 0.00 36.73 2.29
2794 3694 3.762779 GGAATTTTTCCTGTGATGCTCG 58.237 45.455 0.00 0.00 46.57 5.03
2795 3695 3.191371 GGAATTTTTCCTGTGATGCTCGT 59.809 43.478 0.00 0.00 46.57 4.18
2797 3697 4.853924 ATTTTTCCTGTGATGCTCGTTT 57.146 36.364 0.00 0.00 0.00 3.60
2798 3698 3.624326 TTTTCCTGTGATGCTCGTTTG 57.376 42.857 0.00 0.00 0.00 2.93
2799 3699 2.542020 TTCCTGTGATGCTCGTTTGA 57.458 45.000 0.00 0.00 0.00 2.69
2800 3700 2.768253 TCCTGTGATGCTCGTTTGAT 57.232 45.000 0.00 0.00 0.00 2.57
2801 3701 3.057969 TCCTGTGATGCTCGTTTGATT 57.942 42.857 0.00 0.00 0.00 2.57
2804 3704 2.412870 TGTGATGCTCGTTTGATTCGT 58.587 42.857 0.00 0.00 0.00 3.85
2805 3705 3.580731 TGTGATGCTCGTTTGATTCGTA 58.419 40.909 0.00 0.00 0.00 3.43
2807 3707 3.000322 GTGATGCTCGTTTGATTCGTAGG 60.000 47.826 0.00 0.00 0.00 3.18
2809 3709 3.520290 TGCTCGTTTGATTCGTAGGAT 57.480 42.857 0.00 0.00 0.00 3.24
2810 3710 3.857052 TGCTCGTTTGATTCGTAGGATT 58.143 40.909 0.00 0.00 0.00 3.01
2811 3711 3.616821 TGCTCGTTTGATTCGTAGGATTG 59.383 43.478 0.00 0.00 0.00 2.67
2812 3712 3.001330 GCTCGTTTGATTCGTAGGATTGG 59.999 47.826 0.00 0.00 0.00 3.16
2813 3713 2.933906 TCGTTTGATTCGTAGGATTGGC 59.066 45.455 0.00 0.00 0.00 4.52
2814 3714 2.675844 CGTTTGATTCGTAGGATTGGCA 59.324 45.455 0.00 0.00 0.00 4.92
2816 3716 4.552767 CGTTTGATTCGTAGGATTGGCATC 60.553 45.833 0.00 0.00 0.00 3.91
2828 3728 5.876651 GGATTGGCATCCTTAGGAATTTT 57.123 39.130 4.56 0.00 45.41 1.82
2830 3730 5.221521 GGATTGGCATCCTTAGGAATTTTCC 60.222 44.000 4.56 4.01 45.41 3.13
2839 4226 6.298423 ATCCTTAGGAATTTTCCCACAGGATT 60.298 38.462 19.61 10.51 46.13 3.01
2840 4227 8.077666 ATCCTTAGGAATTTTCCCACAGGATTC 61.078 40.741 19.61 0.00 46.13 2.52
2847 4234 5.885449 TTTTCCCACAGGATTCATTTGTT 57.115 34.783 0.00 0.00 43.54 2.83
2850 4237 5.512942 TCCCACAGGATTCATTTGTTCTA 57.487 39.130 0.00 0.00 37.19 2.10
2857 4244 8.918658 CACAGGATTCATTTGTTCTACATTTTG 58.081 33.333 0.00 0.00 0.00 2.44
2859 4246 8.306038 CAGGATTCATTTGTTCTACATTTTGGA 58.694 33.333 0.00 0.00 0.00 3.53
2860 4247 8.526147 AGGATTCATTTGTTCTACATTTTGGAG 58.474 33.333 0.00 0.00 0.00 3.86
2862 4249 7.831691 TTCATTTGTTCTACATTTTGGAGGA 57.168 32.000 0.00 0.00 0.00 3.71
2866 4253 9.492973 CATTTGTTCTACATTTTGGAGGAAAAT 57.507 29.630 0.00 0.00 43.77 1.82
2869 4256 9.898152 TTGTTCTACATTTTGGAGGAAAATTTT 57.102 25.926 2.28 2.28 41.50 1.82
2870 4257 9.541143 TGTTCTACATTTTGGAGGAAAATTTTC 57.459 29.630 20.51 20.51 41.50 2.29
2871 4258 9.541143 GTTCTACATTTTGGAGGAAAATTTTCA 57.459 29.630 27.53 9.21 41.50 2.69
2876 4263 8.839343 ACATTTTGGAGGAAAATTTTCATTCAC 58.161 29.630 22.78 14.65 41.50 3.18
2877 4264 9.059260 CATTTTGGAGGAAAATTTTCATTCACT 57.941 29.630 22.78 14.35 41.50 3.41
2878 4265 8.661352 TTTTGGAGGAAAATTTTCATTCACTC 57.339 30.769 22.78 20.29 36.32 3.51
2879 4266 6.975196 TGGAGGAAAATTTTCATTCACTCA 57.025 33.333 27.53 15.97 38.92 3.41
2880 4267 7.358770 TGGAGGAAAATTTTCATTCACTCAA 57.641 32.000 27.53 16.70 38.92 3.02
2881 4268 7.790027 TGGAGGAAAATTTTCATTCACTCAAA 58.210 30.769 27.53 14.95 38.92 2.69
2882 4269 7.710475 TGGAGGAAAATTTTCATTCACTCAAAC 59.290 33.333 27.53 13.94 38.92 2.93
2883 4270 7.171508 GGAGGAAAATTTTCATTCACTCAAACC 59.828 37.037 27.53 13.72 38.92 3.27
2885 4272 7.928167 AGGAAAATTTTCATTCACTCAAACCTC 59.072 33.333 27.53 8.42 38.92 3.85
2886 4273 7.928167 GGAAAATTTTCATTCACTCAAACCTCT 59.072 33.333 27.53 0.00 38.92 3.69
2887 4274 9.317936 GAAAATTTTCATTCACTCAAACCTCTT 57.682 29.630 23.06 0.00 37.15 2.85
2888 4275 9.671279 AAAATTTTCATTCACTCAAACCTCTTT 57.329 25.926 0.00 0.00 0.00 2.52
2889 4276 8.652810 AATTTTCATTCACTCAAACCTCTTTG 57.347 30.769 0.00 0.00 38.56 2.77
2890 4277 6.773976 TTTCATTCACTCAAACCTCTTTGT 57.226 33.333 0.00 0.00 38.38 2.83
2891 4278 7.873719 TTTCATTCACTCAAACCTCTTTGTA 57.126 32.000 0.00 0.00 38.38 2.41
2892 4279 7.496529 TTCATTCACTCAAACCTCTTTGTAG 57.503 36.000 0.00 0.00 38.38 2.74
2894 4281 7.279615 TCATTCACTCAAACCTCTTTGTAGAA 58.720 34.615 0.00 0.00 38.38 2.10
2897 4284 7.730364 TCACTCAAACCTCTTTGTAGAATTC 57.270 36.000 0.00 0.00 38.38 2.17
2898 4285 7.279615 TCACTCAAACCTCTTTGTAGAATTCA 58.720 34.615 8.44 0.00 38.38 2.57
2900 4287 8.571336 CACTCAAACCTCTTTGTAGAATTCATT 58.429 33.333 8.44 0.00 38.38 2.57
2903 4290 8.912988 TCAAACCTCTTTGTAGAATTCATTTGT 58.087 29.630 8.44 0.00 38.38 2.83
2904 4291 9.533253 CAAACCTCTTTGTAGAATTCATTTGTT 57.467 29.630 8.44 0.00 33.31 2.83
2912 4299 7.945033 TGTAGAATTCATTTGTTTTTCCTGC 57.055 32.000 8.44 0.00 0.00 4.85
2914 4301 4.448732 AGAATTCATTTGTTTTTCCTGCGC 59.551 37.500 8.44 0.00 0.00 6.09
2916 4303 4.576216 TTCATTTGTTTTTCCTGCGCTA 57.424 36.364 9.73 0.00 0.00 4.26
2917 4304 4.782019 TCATTTGTTTTTCCTGCGCTAT 57.218 36.364 9.73 0.00 0.00 2.97
2918 4305 4.732784 TCATTTGTTTTTCCTGCGCTATC 58.267 39.130 9.73 0.00 0.00 2.08
2920 4307 4.576216 TTTGTTTTTCCTGCGCTATCAA 57.424 36.364 9.73 0.40 0.00 2.57
2921 4308 4.576216 TTGTTTTTCCTGCGCTATCAAA 57.424 36.364 9.73 0.00 0.00 2.69
2924 4311 4.022416 TGTTTTTCCTGCGCTATCAAACAT 60.022 37.500 9.73 0.00 29.87 2.71
2926 4313 4.782019 TTTCCTGCGCTATCAAACATTT 57.218 36.364 9.73 0.00 0.00 2.32
2927 4314 3.763097 TCCTGCGCTATCAAACATTTG 57.237 42.857 9.73 0.00 39.48 2.32
2928 4315 3.081061 TCCTGCGCTATCAAACATTTGT 58.919 40.909 9.73 0.00 39.18 2.83
2929 4316 3.505680 TCCTGCGCTATCAAACATTTGTT 59.494 39.130 9.73 0.00 40.50 2.83
2931 4318 4.685628 CCTGCGCTATCAAACATTTGTTTT 59.314 37.500 9.73 0.00 45.07 2.43
2933 4320 5.284864 TGCGCTATCAAACATTTGTTTTCA 58.715 33.333 9.73 0.00 45.07 2.69
2969 4356 9.142014 GGATACTATGAGACATGCTATCCTATT 57.858 37.037 15.01 0.00 0.00 1.73
2973 4360 8.530311 ACTATGAGACATGCTATCCTATTTCTG 58.470 37.037 0.00 0.00 0.00 3.02
2974 4361 6.737720 TGAGACATGCTATCCTATTTCTGT 57.262 37.500 0.00 0.00 0.00 3.41
2975 4362 7.839680 TGAGACATGCTATCCTATTTCTGTA 57.160 36.000 0.00 0.00 0.00 2.74
2976 4363 8.427902 TGAGACATGCTATCCTATTTCTGTAT 57.572 34.615 0.00 0.00 0.00 2.29
2977 4364 8.874156 TGAGACATGCTATCCTATTTCTGTATT 58.126 33.333 0.00 0.00 0.00 1.89
2978 4365 9.717942 GAGACATGCTATCCTATTTCTGTATTT 57.282 33.333 0.00 0.00 0.00 1.40
2985 4372 9.343539 GCTATCCTATTTCTGTATTTTTCCTGT 57.656 33.333 0.00 0.00 0.00 4.00
2988 4375 8.575649 TCCTATTTCTGTATTTTTCCTGTTCC 57.424 34.615 0.00 0.00 0.00 3.62
2990 4377 9.025041 CCTATTTCTGTATTTTTCCTGTTCCTT 57.975 33.333 0.00 0.00 0.00 3.36
2992 4379 7.889873 TTTCTGTATTTTTCCTGTTCCTTCA 57.110 32.000 0.00 0.00 0.00 3.02
2995 4382 8.477419 TCTGTATTTTTCCTGTTCCTTCATTT 57.523 30.769 0.00 0.00 0.00 2.32
2997 4384 8.885494 TGTATTTTTCCTGTTCCTTCATTTTG 57.115 30.769 0.00 0.00 0.00 2.44
2999 4386 8.978539 GTATTTTTCCTGTTCCTTCATTTTGAC 58.021 33.333 0.00 0.00 0.00 3.18
3000 4387 6.537453 TTTTCCTGTTCCTTCATTTTGACA 57.463 33.333 0.00 0.00 0.00 3.58
3001 4388 6.537453 TTTCCTGTTCCTTCATTTTGACAA 57.463 33.333 0.00 0.00 0.00 3.18
3002 4389 6.729690 TTCCTGTTCCTTCATTTTGACAAT 57.270 33.333 0.00 0.00 0.00 2.71
3003 4390 6.331369 TCCTGTTCCTTCATTTTGACAATC 57.669 37.500 0.00 0.00 0.00 2.67
3004 4391 5.243730 TCCTGTTCCTTCATTTTGACAATCC 59.756 40.000 0.00 0.00 0.00 3.01
3005 4392 5.244626 CCTGTTCCTTCATTTTGACAATCCT 59.755 40.000 0.00 0.00 0.00 3.24
3006 4393 6.088016 TGTTCCTTCATTTTGACAATCCTG 57.912 37.500 0.00 0.00 0.00 3.86
3007 4394 4.789012 TCCTTCATTTTGACAATCCTGC 57.211 40.909 0.00 0.00 0.00 4.85
3009 4396 3.191162 CCTTCATTTTGACAATCCTGCGA 59.809 43.478 0.00 0.00 0.00 5.10
3010 4397 4.321156 CCTTCATTTTGACAATCCTGCGAA 60.321 41.667 0.00 0.00 0.00 4.70
3011 4398 5.389859 TTCATTTTGACAATCCTGCGAAT 57.610 34.783 0.00 0.00 0.00 3.34
3012 4399 4.985413 TCATTTTGACAATCCTGCGAATC 58.015 39.130 0.00 0.00 0.00 2.52
3013 4400 4.458642 TCATTTTGACAATCCTGCGAATCA 59.541 37.500 0.00 0.00 0.00 2.57
3014 4401 4.844998 TTTTGACAATCCTGCGAATCAA 57.155 36.364 0.00 0.00 0.00 2.57
3015 4402 4.844998 TTTGACAATCCTGCGAATCAAA 57.155 36.364 0.00 0.00 34.57 2.69
3016 4403 4.424061 TTGACAATCCTGCGAATCAAAG 57.576 40.909 0.00 0.00 0.00 2.77
3017 4404 3.673902 TGACAATCCTGCGAATCAAAGA 58.326 40.909 0.00 0.00 0.00 2.52
3019 4406 3.012518 ACAATCCTGCGAATCAAAGAGG 58.987 45.455 0.00 0.00 0.00 3.69
3020 4407 1.673168 ATCCTGCGAATCAAAGAGGC 58.327 50.000 0.00 0.00 0.00 4.70
3021 4408 0.392998 TCCTGCGAATCAAAGAGGCC 60.393 55.000 0.00 0.00 0.00 5.19
3022 4409 1.379642 CCTGCGAATCAAAGAGGCCC 61.380 60.000 0.00 0.00 0.00 5.80
3024 4411 0.038166 TGCGAATCAAAGAGGCCCTT 59.962 50.000 0.00 0.00 36.47 3.95
3025 4412 0.453390 GCGAATCAAAGAGGCCCTTG 59.547 55.000 0.00 0.56 34.79 3.61
3026 4413 0.453390 CGAATCAAAGAGGCCCTTGC 59.547 55.000 0.00 0.00 34.79 4.01
3027 4414 1.549203 GAATCAAAGAGGCCCTTGCA 58.451 50.000 0.00 0.00 40.13 4.08
3028 4415 1.475682 GAATCAAAGAGGCCCTTGCAG 59.524 52.381 0.00 0.00 40.13 4.41
3029 4416 0.700564 ATCAAAGAGGCCCTTGCAGA 59.299 50.000 0.00 3.13 40.13 4.26
3031 4418 0.815734 CAAAGAGGCCCTTGCAGATG 59.184 55.000 0.00 0.00 40.13 2.90
3034 4421 0.323178 AGAGGCCCTTGCAGATGTTG 60.323 55.000 0.00 0.00 40.13 3.33
3035 4422 0.322816 GAGGCCCTTGCAGATGTTGA 60.323 55.000 0.00 0.00 40.13 3.18
3036 4423 0.333993 AGGCCCTTGCAGATGTTGAT 59.666 50.000 0.00 0.00 40.13 2.57
3037 4424 1.565759 AGGCCCTTGCAGATGTTGATA 59.434 47.619 0.00 0.00 40.13 2.15
3038 4425 2.176364 AGGCCCTTGCAGATGTTGATAT 59.824 45.455 0.00 0.00 40.13 1.63
3041 4428 4.141869 GGCCCTTGCAGATGTTGATATTTT 60.142 41.667 0.00 0.00 40.13 1.82
3042 4429 5.422145 GCCCTTGCAGATGTTGATATTTTT 58.578 37.500 0.00 0.00 37.47 1.94
3113 4500 9.834628 TTTTATATGCAGACTAAAAAGAAACGG 57.165 29.630 0.00 0.00 0.00 4.44
3114 4501 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
3115 4502 7.865706 ATATGCAGACTAAAAAGAAACGGAT 57.134 32.000 0.00 0.00 0.00 4.18
3116 4503 5.356882 TGCAGACTAAAAAGAAACGGATG 57.643 39.130 0.00 0.00 0.00 3.51
3117 4504 5.060506 TGCAGACTAAAAAGAAACGGATGA 58.939 37.500 0.00 0.00 0.00 2.92
3118 4505 5.529430 TGCAGACTAAAAAGAAACGGATGAA 59.471 36.000 0.00 0.00 0.00 2.57
3119 4506 6.080406 GCAGACTAAAAAGAAACGGATGAAG 58.920 40.000 0.00 0.00 0.00 3.02
3120 4507 6.293462 GCAGACTAAAAAGAAACGGATGAAGT 60.293 38.462 0.00 0.00 0.00 3.01
3121 4508 7.095355 GCAGACTAAAAAGAAACGGATGAAGTA 60.095 37.037 0.00 0.00 0.00 2.24
3122 4509 8.770828 CAGACTAAAAAGAAACGGATGAAGTAA 58.229 33.333 0.00 0.00 0.00 2.24
3123 4510 9.503399 AGACTAAAAAGAAACGGATGAAGTAAT 57.497 29.630 0.00 0.00 0.00 1.89
3131 4518 9.503399 AAGAAACGGATGAAGTAATAAAAGAGT 57.497 29.630 0.00 0.00 0.00 3.24
3149 4707 4.058817 AGAGTAAAAAGGACGTTGCTCAG 58.941 43.478 4.06 0.00 38.50 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.441001 TGGGTCCGTTTAGGGTAAAACA 59.559 45.455 0.00 0.00 38.93 2.83
2 3 2.224744 GGTGGGTCCGTTTAGGGTAAAA 60.225 50.000 0.00 0.00 41.52 1.52
3 4 1.350684 GGTGGGTCCGTTTAGGGTAAA 59.649 52.381 0.00 0.00 41.52 2.01
4 5 0.983467 GGTGGGTCCGTTTAGGGTAA 59.017 55.000 0.00 0.00 41.52 2.85
5 6 0.909133 GGGTGGGTCCGTTTAGGGTA 60.909 60.000 0.00 0.00 41.52 3.69
6 7 2.226315 GGGTGGGTCCGTTTAGGGT 61.226 63.158 0.00 0.00 41.52 4.34
7 8 2.672908 GGGTGGGTCCGTTTAGGG 59.327 66.667 0.00 0.00 41.52 3.53
8 9 2.266689 CGGGTGGGTCCGTTTAGG 59.733 66.667 0.00 0.00 44.60 2.69
15 16 2.298661 ATCTTGTCCGGGTGGGTCC 61.299 63.158 0.00 0.00 37.00 4.46
16 17 1.078426 CATCTTGTCCGGGTGGGTC 60.078 63.158 0.00 0.00 37.00 4.46
17 18 1.537889 TCATCTTGTCCGGGTGGGT 60.538 57.895 0.00 0.00 37.00 4.51
18 19 1.078426 GTCATCTTGTCCGGGTGGG 60.078 63.158 0.00 0.00 35.24 4.61
19 20 1.447838 CGTCATCTTGTCCGGGTGG 60.448 63.158 0.00 0.00 0.00 4.61
20 21 0.736325 GACGTCATCTTGTCCGGGTG 60.736 60.000 11.55 0.00 0.00 4.61
21 22 1.590147 GACGTCATCTTGTCCGGGT 59.410 57.895 11.55 0.00 0.00 5.28
22 23 1.516386 CGACGTCATCTTGTCCGGG 60.516 63.158 17.16 0.00 0.00 5.73
23 24 2.158959 GCGACGTCATCTTGTCCGG 61.159 63.158 17.16 0.00 0.00 5.14
24 25 2.497092 CGCGACGTCATCTTGTCCG 61.497 63.158 17.16 0.00 0.00 4.79
25 26 2.789203 GCGCGACGTCATCTTGTCC 61.789 63.158 17.16 0.00 0.00 4.02
26 27 2.689766 GCGCGACGTCATCTTGTC 59.310 61.111 17.16 0.00 0.00 3.18
27 28 3.172575 CGCGCGACGTCATCTTGT 61.173 61.111 28.94 0.00 36.87 3.16
28 29 3.902063 CCGCGCGACGTCATCTTG 61.902 66.667 34.63 6.11 41.42 3.02
29 30 4.415332 ACCGCGCGACGTCATCTT 62.415 61.111 34.63 0.00 41.42 2.40
42 43 2.252072 TATGAGGCCAACTCCACCGC 62.252 60.000 5.01 0.00 46.01 5.68
43 44 0.469917 ATATGAGGCCAACTCCACCG 59.530 55.000 5.01 0.00 46.01 4.94
44 45 2.551071 GCTATATGAGGCCAACTCCACC 60.551 54.545 5.01 0.00 46.01 4.61
45 46 2.551071 GGCTATATGAGGCCAACTCCAC 60.551 54.545 5.01 0.00 46.01 4.02
46 47 1.699634 GGCTATATGAGGCCAACTCCA 59.300 52.381 5.01 0.00 46.01 3.86
47 48 2.481289 GGCTATATGAGGCCAACTCC 57.519 55.000 5.01 0.00 46.01 3.85
55 56 1.774254 TGGTTGGTGGGCTATATGAGG 59.226 52.381 0.00 0.00 0.00 3.86
56 57 3.560025 GGATGGTTGGTGGGCTATATGAG 60.560 52.174 0.00 0.00 0.00 2.90
63 64 3.672503 GGGGATGGTTGGTGGGCT 61.673 66.667 0.00 0.00 0.00 5.19
360 369 2.476534 AAGTTTGCGATGCCCTTGCG 62.477 55.000 0.00 0.00 41.78 4.85
586 610 1.004320 ACAGCCGGTGATAACGCAA 60.004 52.632 1.90 0.00 0.00 4.85
641 665 2.031870 ACCAAAGTTTCAGTTCCAGGC 58.968 47.619 0.00 0.00 0.00 4.85
646 670 3.627577 TCTGAGCACCAAAGTTTCAGTTC 59.372 43.478 1.09 0.00 36.86 3.01
664 688 2.776312 GGCGACGTATCTGATTCTGA 57.224 50.000 0.00 0.00 0.00 3.27
686 710 2.018542 TACATTTGCACGCTACTCCC 57.981 50.000 0.00 0.00 0.00 4.30
720 744 1.102154 CTTTGCCGCATACCATTCCA 58.898 50.000 0.00 0.00 0.00 3.53
733 757 2.873288 CTTCGCTCCTGCTTTGCC 59.127 61.111 0.00 0.00 36.97 4.52
746 770 2.393768 ATTGCTGTCGCCTGCTTCG 61.394 57.895 0.00 0.00 36.57 3.79
823 884 1.593196 CCAAACTTGGCTGAGTCGAA 58.407 50.000 0.00 0.00 42.21 3.71
998 1076 4.074526 TGCTGGGTGCTCTCGCTC 62.075 66.667 4.60 0.00 43.37 5.03
1403 1489 2.677979 GCCGAAGAAAGGCGTGACC 61.678 63.158 0.00 0.00 45.58 4.02
1446 1532 4.735599 GGAGGACGGGGAGGGGTT 62.736 72.222 0.00 0.00 0.00 4.11
1474 1560 4.056125 CGTCTGCGTCCTCCTGCA 62.056 66.667 0.00 0.00 39.13 4.41
1487 1573 1.286260 GTTGCTCCTGTCGTCGTCT 59.714 57.895 0.00 0.00 0.00 4.18
1497 1583 3.764466 CTCGGCCTCGTTGCTCCT 61.764 66.667 0.00 0.00 37.69 3.69
1737 1838 1.719600 AGCATTTCAGTGAGACGAGC 58.280 50.000 0.00 0.00 0.00 5.03
1738 1839 4.450419 AGAAAAGCATTTCAGTGAGACGAG 59.550 41.667 16.09 0.00 46.03 4.18
1740 1841 4.739046 AGAAAAGCATTTCAGTGAGACG 57.261 40.909 16.09 0.00 46.03 4.18
1741 1842 5.911838 GTCAAGAAAAGCATTTCAGTGAGAC 59.088 40.000 16.09 11.34 46.03 3.36
1742 1843 5.009010 GGTCAAGAAAAGCATTTCAGTGAGA 59.991 40.000 16.09 4.25 46.03 3.27
1744 1845 4.889409 AGGTCAAGAAAAGCATTTCAGTGA 59.111 37.500 16.09 14.66 46.03 3.41
1745 1846 4.980434 CAGGTCAAGAAAAGCATTTCAGTG 59.020 41.667 16.09 12.84 46.03 3.66
1746 1847 4.038402 CCAGGTCAAGAAAAGCATTTCAGT 59.962 41.667 16.09 1.46 46.03 3.41
1755 1866 2.729882 CGTACGTCCAGGTCAAGAAAAG 59.270 50.000 7.22 0.00 0.00 2.27
1962 2079 0.738975 CGTAGCGGATGGTCTTCTGA 59.261 55.000 0.00 0.00 0.00 3.27
2166 2289 1.160946 TGCTCGCGCCAAAACTACAA 61.161 50.000 0.00 0.00 34.43 2.41
2269 2417 5.931441 AGAAAAACAGTGAGTACATCAGC 57.069 39.130 0.00 0.00 39.07 4.26
2368 3094 0.806868 CGGCATTGCACTGATGAACT 59.193 50.000 11.39 0.00 0.00 3.01
2462 3348 5.643339 AAATCTGTTCGATGAAGATACGC 57.357 39.130 5.69 0.00 30.50 4.42
2494 3384 1.299541 CGCTTCCATTCGCATTACCT 58.700 50.000 0.00 0.00 0.00 3.08
2514 3404 0.787787 TCGCATCGAAAGTTGTTCCG 59.212 50.000 0.00 0.00 31.06 4.30
2570 3469 6.420306 CAGTGATTCCAATCTCGTATTCTCTG 59.580 42.308 1.13 0.00 36.39 3.35
2571 3470 6.322456 TCAGTGATTCCAATCTCGTATTCTCT 59.678 38.462 1.13 0.00 36.39 3.10
2612 3512 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
2614 3514 4.386711 ACAGACTAAAAAGAAACGGAGGG 58.613 43.478 0.00 0.00 0.00 4.30
2615 3515 8.943909 ATATACAGACTAAAAAGAAACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
2653 3553 9.762933 ATGCACAAATTTAACAAAGTATGACTT 57.237 25.926 0.00 0.00 40.80 3.01
2700 3600 9.784376 AAGGAGCCATAATACTGGAGTTATATA 57.216 33.333 0.00 0.00 38.69 0.86
2703 3603 7.072454 TCAAAGGAGCCATAATACTGGAGTTAT 59.928 37.037 0.00 0.00 38.69 1.89
2705 3605 5.191722 TCAAAGGAGCCATAATACTGGAGTT 59.808 40.000 0.00 0.00 38.69 3.01
2706 3606 4.721776 TCAAAGGAGCCATAATACTGGAGT 59.278 41.667 0.00 0.00 38.69 3.85
2707 3607 5.296151 TCAAAGGAGCCATAATACTGGAG 57.704 43.478 0.00 0.00 38.69 3.86
2708 3608 5.912149 ATCAAAGGAGCCATAATACTGGA 57.088 39.130 0.00 0.00 38.69 3.86
2709 3609 6.064060 TGAATCAAAGGAGCCATAATACTGG 58.936 40.000 0.00 0.00 39.45 4.00
2710 3610 7.572523 TTGAATCAAAGGAGCCATAATACTG 57.427 36.000 0.00 0.00 0.00 2.74
2711 3611 8.230472 CTTTGAATCAAAGGAGCCATAATACT 57.770 34.615 23.96 0.00 44.75 2.12
2731 3631 7.398618 TCCAAAAATCCTATGCAATACCTTTGA 59.601 33.333 0.00 0.00 0.00 2.69
2735 3635 5.835280 CCTCCAAAAATCCTATGCAATACCT 59.165 40.000 0.00 0.00 0.00 3.08
2736 3636 5.833131 TCCTCCAAAAATCCTATGCAATACC 59.167 40.000 0.00 0.00 0.00 2.73
2737 3637 6.959639 TCCTCCAAAAATCCTATGCAATAC 57.040 37.500 0.00 0.00 0.00 1.89
2738 3638 7.040478 CGAATCCTCCAAAAATCCTATGCAATA 60.040 37.037 0.00 0.00 0.00 1.90
2739 3639 6.239120 CGAATCCTCCAAAAATCCTATGCAAT 60.239 38.462 0.00 0.00 0.00 3.56
2740 3640 5.067674 CGAATCCTCCAAAAATCCTATGCAA 59.932 40.000 0.00 0.00 0.00 4.08
2742 3642 4.821805 TCGAATCCTCCAAAAATCCTATGC 59.178 41.667 0.00 0.00 0.00 3.14
2743 3643 6.238759 GGTTCGAATCCTCCAAAAATCCTATG 60.239 42.308 0.00 0.00 0.00 2.23
2744 3644 5.828328 GGTTCGAATCCTCCAAAAATCCTAT 59.172 40.000 0.00 0.00 0.00 2.57
2746 3646 4.017126 GGTTCGAATCCTCCAAAAATCCT 58.983 43.478 0.00 0.00 0.00 3.24
2747 3647 3.130516 GGGTTCGAATCCTCCAAAAATCC 59.869 47.826 20.59 2.11 0.00 3.01
2749 3649 4.047627 AGGGTTCGAATCCTCCAAAAAT 57.952 40.909 24.69 0.00 32.95 1.82
2751 3651 3.518992 AAGGGTTCGAATCCTCCAAAA 57.481 42.857 29.75 0.00 39.03 2.44
2752 3652 3.054655 CCTAAGGGTTCGAATCCTCCAAA 60.055 47.826 29.75 14.57 39.03 3.28
2753 3653 2.504175 CCTAAGGGTTCGAATCCTCCAA 59.496 50.000 29.75 16.92 39.03 3.53
2754 3654 2.116238 CCTAAGGGTTCGAATCCTCCA 58.884 52.381 29.75 19.00 39.03 3.86
2755 3655 2.395619 TCCTAAGGGTTCGAATCCTCC 58.604 52.381 29.75 12.17 39.03 4.30
2757 3657 5.452341 AAATTCCTAAGGGTTCGAATCCT 57.548 39.130 24.69 24.69 42.76 3.24
2759 3659 6.561614 GGAAAAATTCCTAAGGGTTCGAATC 58.438 40.000 0.00 0.00 46.57 2.52
2760 3660 6.525578 GGAAAAATTCCTAAGGGTTCGAAT 57.474 37.500 0.00 0.00 46.57 3.34
2761 3661 5.970317 GGAAAAATTCCTAAGGGTTCGAA 57.030 39.130 0.00 0.00 46.57 3.71
2773 3673 3.191371 ACGAGCATCACAGGAAAAATTCC 59.809 43.478 0.75 0.75 42.55 3.01
2774 3674 4.425577 ACGAGCATCACAGGAAAAATTC 57.574 40.909 0.00 0.00 33.17 2.17
2776 3676 4.278170 TCAAACGAGCATCACAGGAAAAAT 59.722 37.500 0.00 0.00 33.17 1.82
2777 3677 3.629855 TCAAACGAGCATCACAGGAAAAA 59.370 39.130 0.00 0.00 33.17 1.94
2779 3679 2.844946 TCAAACGAGCATCACAGGAAA 58.155 42.857 0.00 0.00 33.17 3.13
2780 3680 2.542020 TCAAACGAGCATCACAGGAA 57.458 45.000 0.00 0.00 33.17 3.36
2781 3681 2.768253 ATCAAACGAGCATCACAGGA 57.232 45.000 0.00 0.00 33.17 3.86
2782 3682 2.222886 CGAATCAAACGAGCATCACAGG 60.223 50.000 0.00 0.00 33.17 4.00
2783 3683 2.413112 ACGAATCAAACGAGCATCACAG 59.587 45.455 0.00 0.00 33.17 3.66
2784 3684 2.412870 ACGAATCAAACGAGCATCACA 58.587 42.857 0.00 0.00 33.17 3.58
2785 3685 3.000322 CCTACGAATCAAACGAGCATCAC 60.000 47.826 0.00 0.00 33.17 3.06
2786 3686 3.119280 TCCTACGAATCAAACGAGCATCA 60.119 43.478 0.00 0.00 33.17 3.07
2787 3687 3.444916 TCCTACGAATCAAACGAGCATC 58.555 45.455 0.00 0.00 34.70 3.91
2788 3688 3.520290 TCCTACGAATCAAACGAGCAT 57.480 42.857 0.00 0.00 34.70 3.79
2789 3689 3.520290 ATCCTACGAATCAAACGAGCA 57.480 42.857 0.00 0.00 34.70 4.26
2791 3691 3.001330 GCCAATCCTACGAATCAAACGAG 59.999 47.826 0.00 0.00 34.70 4.18
2792 3692 2.933906 GCCAATCCTACGAATCAAACGA 59.066 45.455 0.00 0.00 34.70 3.85
2794 3694 4.848757 GATGCCAATCCTACGAATCAAAC 58.151 43.478 0.00 0.00 0.00 2.93
2807 3707 5.221521 GGGAAAATTCCTAAGGATGCCAATC 60.222 44.000 11.75 0.00 46.72 2.67
2809 3709 4.030216 GGGAAAATTCCTAAGGATGCCAA 58.970 43.478 11.75 0.00 46.72 4.52
2810 3710 3.012274 TGGGAAAATTCCTAAGGATGCCA 59.988 43.478 11.75 0.00 46.72 4.92
2811 3711 3.384789 GTGGGAAAATTCCTAAGGATGCC 59.615 47.826 11.75 0.00 46.72 4.40
2812 3712 4.023291 TGTGGGAAAATTCCTAAGGATGC 58.977 43.478 11.75 0.00 46.72 3.91
2813 3713 4.646492 CCTGTGGGAAAATTCCTAAGGATG 59.354 45.833 16.68 2.17 46.72 3.51
2814 3714 4.544152 TCCTGTGGGAAAATTCCTAAGGAT 59.456 41.667 18.71 0.00 46.72 3.24
2816 3716 4.316025 TCCTGTGGGAAAATTCCTAAGG 57.684 45.455 11.75 14.32 46.72 2.69
2817 3717 5.951747 TGAATCCTGTGGGAAAATTCCTAAG 59.048 40.000 11.75 7.11 46.72 2.18
2818 3718 5.898120 TGAATCCTGTGGGAAAATTCCTAA 58.102 37.500 11.75 0.00 46.72 2.69
2819 3719 5.528600 TGAATCCTGTGGGAAAATTCCTA 57.471 39.130 11.75 3.08 46.72 2.94
2820 3720 4.402616 TGAATCCTGTGGGAAAATTCCT 57.597 40.909 11.75 0.00 46.72 3.36
2822 3722 6.466812 ACAAATGAATCCTGTGGGAAAATTC 58.533 36.000 0.00 0.00 45.78 2.17
2823 3723 6.438186 ACAAATGAATCCTGTGGGAAAATT 57.562 33.333 0.00 0.00 45.78 1.82
2825 3725 5.602145 AGAACAAATGAATCCTGTGGGAAAA 59.398 36.000 0.00 0.00 45.78 2.29
2826 3726 5.147032 AGAACAAATGAATCCTGTGGGAAA 58.853 37.500 0.00 0.00 45.78 3.13
2827 3727 4.739793 AGAACAAATGAATCCTGTGGGAA 58.260 39.130 0.00 0.00 45.78 3.97
2828 3728 4.387026 AGAACAAATGAATCCTGTGGGA 57.613 40.909 0.00 0.00 46.81 4.37
2830 3730 6.764308 ATGTAGAACAAATGAATCCTGTGG 57.236 37.500 0.00 0.00 0.00 4.17
2832 3732 8.090214 CCAAAATGTAGAACAAATGAATCCTGT 58.910 33.333 0.00 0.00 0.00 4.00
2836 4223 8.522830 TCCTCCAAAATGTAGAACAAATGAATC 58.477 33.333 0.00 0.00 0.00 2.52
2838 4225 7.831691 TCCTCCAAAATGTAGAACAAATGAA 57.168 32.000 0.00 0.00 0.00 2.57
2839 4226 7.831691 TTCCTCCAAAATGTAGAACAAATGA 57.168 32.000 0.00 0.00 0.00 2.57
2840 4227 8.885494 TTTTCCTCCAAAATGTAGAACAAATG 57.115 30.769 0.00 0.00 0.00 2.32
2842 4229 9.898152 AAATTTTCCTCCAAAATGTAGAACAAA 57.102 25.926 0.00 0.00 42.86 2.83
2850 4237 8.839343 GTGAATGAAAATTTTCCTCCAAAATGT 58.161 29.630 24.51 1.29 42.86 2.71
2857 4244 7.171508 GGTTTGAGTGAATGAAAATTTTCCTCC 59.828 37.037 24.51 14.73 36.36 4.30
2859 4246 7.795047 AGGTTTGAGTGAATGAAAATTTTCCT 58.205 30.769 24.51 14.49 36.36 3.36
2860 4247 7.928167 AGAGGTTTGAGTGAATGAAAATTTTCC 59.072 33.333 24.51 12.26 36.36 3.13
2862 4249 9.671279 AAAGAGGTTTGAGTGAATGAAAATTTT 57.329 25.926 2.28 2.28 0.00 1.82
2866 4253 7.169158 ACAAAGAGGTTTGAGTGAATGAAAA 57.831 32.000 4.91 0.00 45.22 2.29
2869 4256 6.826668 TCTACAAAGAGGTTTGAGTGAATGA 58.173 36.000 4.91 0.00 45.22 2.57
2870 4257 7.496529 TTCTACAAAGAGGTTTGAGTGAATG 57.503 36.000 4.91 0.00 45.22 2.67
2871 4258 8.697507 AATTCTACAAAGAGGTTTGAGTGAAT 57.302 30.769 4.91 7.87 45.22 2.57
2873 4260 7.279615 TGAATTCTACAAAGAGGTTTGAGTGA 58.720 34.615 7.05 0.00 45.22 3.41
2876 4263 9.403110 CAAATGAATTCTACAAAGAGGTTTGAG 57.597 33.333 7.05 0.00 45.22 3.02
2877 4264 8.912988 ACAAATGAATTCTACAAAGAGGTTTGA 58.087 29.630 7.05 0.00 45.22 2.69
2886 4273 8.825745 GCAGGAAAAACAAATGAATTCTACAAA 58.174 29.630 7.05 0.00 0.00 2.83
2887 4274 7.168972 CGCAGGAAAAACAAATGAATTCTACAA 59.831 33.333 7.05 0.00 0.00 2.41
2888 4275 6.640499 CGCAGGAAAAACAAATGAATTCTACA 59.360 34.615 7.05 0.00 0.00 2.74
2889 4276 6.399986 GCGCAGGAAAAACAAATGAATTCTAC 60.400 38.462 0.30 0.00 0.00 2.59
2890 4277 5.633182 GCGCAGGAAAAACAAATGAATTCTA 59.367 36.000 0.30 0.00 0.00 2.10
2891 4278 4.448732 GCGCAGGAAAAACAAATGAATTCT 59.551 37.500 0.30 0.00 0.00 2.40
2892 4279 4.448732 AGCGCAGGAAAAACAAATGAATTC 59.551 37.500 11.47 0.00 0.00 2.17
2894 4281 3.993920 AGCGCAGGAAAAACAAATGAAT 58.006 36.364 11.47 0.00 0.00 2.57
2897 4284 4.484236 TGATAGCGCAGGAAAAACAAATG 58.516 39.130 11.47 0.00 0.00 2.32
2898 4285 4.782019 TGATAGCGCAGGAAAAACAAAT 57.218 36.364 11.47 0.00 0.00 2.32
2900 4287 4.202060 TGTTTGATAGCGCAGGAAAAACAA 60.202 37.500 19.28 8.52 34.22 2.83
2903 4290 4.782019 ATGTTTGATAGCGCAGGAAAAA 57.218 36.364 11.47 0.22 0.00 1.94
2904 4291 4.782019 AATGTTTGATAGCGCAGGAAAA 57.218 36.364 11.47 1.84 0.00 2.29
2905 4292 4.022416 ACAAATGTTTGATAGCGCAGGAAA 60.022 37.500 11.47 0.00 40.55 3.13
2906 4293 3.505680 ACAAATGTTTGATAGCGCAGGAA 59.494 39.130 11.47 0.00 40.55 3.36
2908 4295 3.492421 ACAAATGTTTGATAGCGCAGG 57.508 42.857 11.47 0.00 40.55 4.85
2909 4296 5.401972 TGAAAACAAATGTTTGATAGCGCAG 59.598 36.000 11.47 0.00 46.47 5.18
2910 4297 5.284864 TGAAAACAAATGTTTGATAGCGCA 58.715 33.333 11.47 0.00 46.47 6.09
2911 4298 5.820926 TGAAAACAAATGTTTGATAGCGC 57.179 34.783 11.94 0.00 46.47 5.92
2912 4299 8.486383 TGATTTGAAAACAAATGTTTGATAGCG 58.514 29.630 11.94 0.00 46.47 4.26
2918 4305 9.866936 CCTACATGATTTGAAAACAAATGTTTG 57.133 29.630 11.94 0.00 46.47 2.93
2931 4318 9.367160 TGTCTCATAGTATCCTACATGATTTGA 57.633 33.333 0.00 0.00 31.11 2.69
2935 4322 7.618907 AGCATGTCTCATAGTATCCTACATGAT 59.381 37.037 21.48 16.44 35.74 2.45
2936 4323 6.950619 AGCATGTCTCATAGTATCCTACATGA 59.049 38.462 21.48 2.22 35.74 3.07
2938 4325 9.130661 GATAGCATGTCTCATAGTATCCTACAT 57.869 37.037 0.00 0.00 0.00 2.29
2939 4326 7.558081 GGATAGCATGTCTCATAGTATCCTACA 59.442 40.741 15.20 0.00 34.19 2.74
2940 4327 7.777910 AGGATAGCATGTCTCATAGTATCCTAC 59.222 40.741 19.53 4.97 41.87 3.18
2941 4328 7.877433 AGGATAGCATGTCTCATAGTATCCTA 58.123 38.462 19.53 0.00 41.87 2.94
2942 4329 6.740693 AGGATAGCATGTCTCATAGTATCCT 58.259 40.000 17.37 17.37 39.87 3.24
2943 4330 8.704849 ATAGGATAGCATGTCTCATAGTATCC 57.295 38.462 14.92 14.92 36.30 2.59
2946 4333 9.760926 AGAAATAGGATAGCATGTCTCATAGTA 57.239 33.333 0.00 0.00 0.00 1.82
2947 4334 8.530311 CAGAAATAGGATAGCATGTCTCATAGT 58.470 37.037 0.00 0.00 0.00 2.12
2948 4335 8.530311 ACAGAAATAGGATAGCATGTCTCATAG 58.470 37.037 0.00 0.00 0.00 2.23
2950 4337 7.313740 ACAGAAATAGGATAGCATGTCTCAT 57.686 36.000 0.00 0.00 0.00 2.90
2952 4339 9.717942 AAATACAGAAATAGGATAGCATGTCTC 57.282 33.333 0.00 0.00 0.00 3.36
2958 4345 9.342308 CAGGAAAAATACAGAAATAGGATAGCA 57.658 33.333 0.00 0.00 0.00 3.49
2959 4346 9.343539 ACAGGAAAAATACAGAAATAGGATAGC 57.656 33.333 0.00 0.00 0.00 2.97
2963 4350 8.390921 AGGAACAGGAAAAATACAGAAATAGGA 58.609 33.333 0.00 0.00 0.00 2.94
2964 4351 8.581253 AGGAACAGGAAAAATACAGAAATAGG 57.419 34.615 0.00 0.00 0.00 2.57
2966 4353 9.581289 TGAAGGAACAGGAAAAATACAGAAATA 57.419 29.630 0.00 0.00 0.00 1.40
2969 4356 8.477419 AATGAAGGAACAGGAAAAATACAGAA 57.523 30.769 0.00 0.00 0.00 3.02
2971 4358 8.981647 CAAAATGAAGGAACAGGAAAAATACAG 58.018 33.333 0.00 0.00 0.00 2.74
2973 4360 8.978539 GTCAAAATGAAGGAACAGGAAAAATAC 58.021 33.333 0.00 0.00 0.00 1.89
2974 4361 8.700051 TGTCAAAATGAAGGAACAGGAAAAATA 58.300 29.630 0.00 0.00 0.00 1.40
2975 4362 7.563906 TGTCAAAATGAAGGAACAGGAAAAAT 58.436 30.769 0.00 0.00 0.00 1.82
2976 4363 6.940739 TGTCAAAATGAAGGAACAGGAAAAA 58.059 32.000 0.00 0.00 0.00 1.94
2977 4364 6.537453 TGTCAAAATGAAGGAACAGGAAAA 57.463 33.333 0.00 0.00 0.00 2.29
2978 4365 6.537453 TTGTCAAAATGAAGGAACAGGAAA 57.463 33.333 0.00 0.00 0.00 3.13
2981 4368 5.244626 AGGATTGTCAAAATGAAGGAACAGG 59.755 40.000 0.00 0.00 0.00 4.00
2985 4372 4.321156 CGCAGGATTGTCAAAATGAAGGAA 60.321 41.667 0.00 0.00 0.00 3.36
2986 4373 3.191162 CGCAGGATTGTCAAAATGAAGGA 59.809 43.478 0.00 0.00 0.00 3.36
2987 4374 3.191162 TCGCAGGATTGTCAAAATGAAGG 59.809 43.478 0.00 0.00 0.00 3.46
2988 4375 4.424061 TCGCAGGATTGTCAAAATGAAG 57.576 40.909 0.00 0.00 0.00 3.02
2990 4377 4.458642 TGATTCGCAGGATTGTCAAAATGA 59.541 37.500 0.00 0.00 0.00 2.57
2992 4379 5.389859 TTGATTCGCAGGATTGTCAAAAT 57.610 34.783 0.00 0.00 0.00 1.82
2995 4382 4.071423 TCTTTGATTCGCAGGATTGTCAA 58.929 39.130 0.00 0.00 0.00 3.18
2997 4384 3.064545 CCTCTTTGATTCGCAGGATTGTC 59.935 47.826 0.00 0.00 0.00 3.18
2999 4386 2.223433 GCCTCTTTGATTCGCAGGATTG 60.223 50.000 0.00 0.00 0.00 2.67
3000 4387 2.019984 GCCTCTTTGATTCGCAGGATT 58.980 47.619 0.00 0.00 0.00 3.01
3001 4388 1.673168 GCCTCTTTGATTCGCAGGAT 58.327 50.000 0.00 0.00 0.00 3.24
3002 4389 0.392998 GGCCTCTTTGATTCGCAGGA 60.393 55.000 0.00 0.00 0.00 3.86
3003 4390 1.379642 GGGCCTCTTTGATTCGCAGG 61.380 60.000 0.84 0.00 0.00 4.85
3004 4391 0.393537 AGGGCCTCTTTGATTCGCAG 60.394 55.000 0.00 0.00 0.00 5.18
3005 4392 0.038166 AAGGGCCTCTTTGATTCGCA 59.962 50.000 6.46 0.00 29.99 5.10
3006 4393 0.453390 CAAGGGCCTCTTTGATTCGC 59.547 55.000 6.46 0.00 32.41 4.70
3007 4394 0.453390 GCAAGGGCCTCTTTGATTCG 59.547 55.000 6.46 2.25 32.41 3.34
3009 4396 1.076024 TCTGCAAGGGCCTCTTTGATT 59.924 47.619 6.46 0.00 40.13 2.57
3010 4397 0.700564 TCTGCAAGGGCCTCTTTGAT 59.299 50.000 6.46 0.00 40.13 2.57
3011 4398 0.700564 ATCTGCAAGGGCCTCTTTGA 59.299 50.000 6.46 3.96 40.13 2.69
3012 4399 0.815734 CATCTGCAAGGGCCTCTTTG 59.184 55.000 6.46 2.11 40.13 2.77
3013 4400 0.407139 ACATCTGCAAGGGCCTCTTT 59.593 50.000 6.46 0.00 40.13 2.52
3014 4401 0.407139 AACATCTGCAAGGGCCTCTT 59.593 50.000 6.46 0.93 40.13 2.85
3015 4402 0.323178 CAACATCTGCAAGGGCCTCT 60.323 55.000 6.46 0.00 40.13 3.69
3016 4403 0.322816 TCAACATCTGCAAGGGCCTC 60.323 55.000 6.46 0.00 40.13 4.70
3017 4404 0.333993 ATCAACATCTGCAAGGGCCT 59.666 50.000 0.00 0.00 40.13 5.19
3019 4406 4.660789 AAATATCAACATCTGCAAGGGC 57.339 40.909 0.00 0.00 41.68 5.19
3087 4474 9.834628 CCGTTTCTTTTTAGTCTGCATATAAAA 57.165 29.630 6.73 6.73 0.00 1.52
3089 4476 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
3090 4477 8.826710 CATCCGTTTCTTTTTAGTCTGCATATA 58.173 33.333 0.00 0.00 0.00 0.86
3091 4478 7.552687 TCATCCGTTTCTTTTTAGTCTGCATAT 59.447 33.333 0.00 0.00 0.00 1.78
3092 4479 6.876789 TCATCCGTTTCTTTTTAGTCTGCATA 59.123 34.615 0.00 0.00 0.00 3.14
3093 4480 5.705441 TCATCCGTTTCTTTTTAGTCTGCAT 59.295 36.000 0.00 0.00 0.00 3.96
3094 4481 5.060506 TCATCCGTTTCTTTTTAGTCTGCA 58.939 37.500 0.00 0.00 0.00 4.41
3095 4482 5.607119 TCATCCGTTTCTTTTTAGTCTGC 57.393 39.130 0.00 0.00 0.00 4.26
3096 4483 7.190920 ACTTCATCCGTTTCTTTTTAGTCTG 57.809 36.000 0.00 0.00 0.00 3.51
3097 4484 8.897872 TTACTTCATCCGTTTCTTTTTAGTCT 57.102 30.769 0.00 0.00 0.00 3.24
3119 4506 9.110617 GCAACGTCCTTTTTACTCTTTTATTAC 57.889 33.333 0.00 0.00 0.00 1.89
3120 4507 9.059260 AGCAACGTCCTTTTTACTCTTTTATTA 57.941 29.630 0.00 0.00 0.00 0.98
3121 4508 7.937649 AGCAACGTCCTTTTTACTCTTTTATT 58.062 30.769 0.00 0.00 0.00 1.40
3122 4509 7.227910 TGAGCAACGTCCTTTTTACTCTTTTAT 59.772 33.333 0.00 0.00 0.00 1.40
3123 4510 6.539464 TGAGCAACGTCCTTTTTACTCTTTTA 59.461 34.615 0.00 0.00 0.00 1.52
3124 4511 5.355910 TGAGCAACGTCCTTTTTACTCTTTT 59.644 36.000 0.00 0.00 0.00 2.27
3125 4512 4.879545 TGAGCAACGTCCTTTTTACTCTTT 59.120 37.500 0.00 0.00 0.00 2.52
3127 4514 4.058817 CTGAGCAACGTCCTTTTTACTCT 58.941 43.478 0.00 0.00 0.00 3.24
3128 4515 3.364068 GCTGAGCAACGTCCTTTTTACTC 60.364 47.826 0.00 0.00 0.00 2.59
3129 4516 2.548480 GCTGAGCAACGTCCTTTTTACT 59.452 45.455 0.00 0.00 0.00 2.24
3130 4517 2.350484 GGCTGAGCAACGTCCTTTTTAC 60.350 50.000 6.82 0.00 0.00 2.01
3131 4518 1.877443 GGCTGAGCAACGTCCTTTTTA 59.123 47.619 6.82 0.00 0.00 1.52
3140 4698 2.664851 TTCGGTGGCTGAGCAACG 60.665 61.111 6.82 7.40 32.39 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.