Multiple sequence alignment - TraesCS6B01G247800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G247800 chr6B 100.000 6160 0 0 1 6160 444543796 444537637 0.000000e+00 11376.0
1 TraesCS6B01G247800 chr6D 94.695 5806 187 35 428 6160 283556579 283550822 0.000000e+00 8903.0
2 TraesCS6B01G247800 chr6A 95.170 5487 180 30 428 5854 403325584 403320123 0.000000e+00 8586.0
3 TraesCS6B01G247800 chr6A 93.960 1871 102 6 3983 5849 403137085 403135222 0.000000e+00 2819.0
4 TraesCS6B01G247800 chr6A 88.189 127 5 3 255 381 403325981 403325865 6.440000e-30 143.0
5 TraesCS6B01G247800 chr5D 85.794 359 38 9 2650 3002 439979426 439979075 9.750000e-98 368.0
6 TraesCS6B01G247800 chr3D 84.341 364 50 3 2650 3006 510649354 510649717 3.530000e-92 350.0
7 TraesCS6B01G247800 chr3D 93.103 203 13 1 70 271 399737462 399737260 4.670000e-76 296.0
8 TraesCS6B01G247800 chr3D 82.609 230 40 0 1217 1446 510309925 510309696 2.910000e-48 204.0
9 TraesCS6B01G247800 chr1A 83.158 380 49 8 2656 3021 98227448 98227070 3.560000e-87 333.0
10 TraesCS6B01G247800 chrUn 84.524 336 43 5 2664 2993 94876664 94876996 2.140000e-84 324.0
11 TraesCS6B01G247800 chrUn 94.089 203 11 1 70 271 86470257 86470459 2.160000e-79 307.0
12 TraesCS6B01G247800 chrUn 94.089 203 11 1 70 271 221540800 221541002 2.160000e-79 307.0
13 TraesCS6B01G247800 chrUn 93.103 203 13 1 70 271 171034429 171034631 4.670000e-76 296.0
14 TraesCS6B01G247800 chr7A 94.089 203 11 1 70 271 60250833 60250631 2.160000e-79 307.0
15 TraesCS6B01G247800 chr7A 93.596 203 12 1 70 271 120869877 120870079 1.000000e-77 302.0
16 TraesCS6B01G247800 chr7A 81.556 347 56 4 2682 3021 692893526 692893181 4.700000e-71 279.0
17 TraesCS6B01G247800 chr4B 94.089 203 11 1 70 271 209279943 209279741 2.160000e-79 307.0
18 TraesCS6B01G247800 chr4B 93.596 203 12 1 70 271 209130880 209130678 1.000000e-77 302.0
19 TraesCS6B01G247800 chr1B 93.596 203 12 1 70 271 672582615 672582817 1.000000e-77 302.0
20 TraesCS6B01G247800 chr1B 81.346 327 54 7 3431 3752 24104962 24104638 6.130000e-65 259.0
21 TraesCS6B01G247800 chr3A 84.244 311 40 3 2689 2994 709464869 709464563 1.680000e-75 294.0
22 TraesCS6B01G247800 chr3A 80.745 322 41 11 3448 3752 686268423 686268106 1.340000e-56 231.0
23 TraesCS6B01G247800 chr3A 82.684 231 38 2 1217 1446 647193417 647193188 2.910000e-48 204.0
24 TraesCS6B01G247800 chr3B 84.106 302 40 6 2650 2947 595316650 595316947 1.010000e-72 285.0
25 TraesCS6B01G247800 chr3B 80.934 257 46 3 1191 1446 672405738 672405484 3.770000e-47 200.0
26 TraesCS6B01G247800 chr2D 82.704 318 39 8 3448 3752 439661340 439661026 1.020000e-67 268.0
27 TraesCS6B01G247800 chr2B 81.707 328 51 9 3431 3752 319356649 319356973 1.320000e-66 265.0
28 TraesCS6B01G247800 chr4A 81.150 313 40 8 3457 3752 190401452 190401762 3.710000e-57 233.0
29 TraesCS6B01G247800 chr7D 96.875 32 1 0 793 824 574787005 574786974 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G247800 chr6B 444537637 444543796 6159 True 11376.0 11376 100.0000 1 6160 1 chr6B.!!$R1 6159
1 TraesCS6B01G247800 chr6D 283550822 283556579 5757 True 8903.0 8903 94.6950 428 6160 1 chr6D.!!$R1 5732
2 TraesCS6B01G247800 chr6A 403320123 403325981 5858 True 4364.5 8586 91.6795 255 5854 2 chr6A.!!$R2 5599
3 TraesCS6B01G247800 chr6A 403135222 403137085 1863 True 2819.0 2819 93.9600 3983 5849 1 chr6A.!!$R1 1866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.106335 CCAGAGCCAGAGCGATCATT 59.894 55.000 2.38 0.0 46.67 2.57 F
1480 1769 0.610687 CTTTCTTCTCTCGCCACCCT 59.389 55.000 0.00 0.0 0.00 4.34 F
1743 2035 1.263217 GCGGATGCTAAACATTACGGG 59.737 52.381 0.00 0.0 39.84 5.28 F
2581 2881 1.429930 TCCTACAACTCACCTTGGCA 58.570 50.000 0.00 0.0 0.00 4.92 F
2687 2987 1.738099 GCACTCACGCTACACCCAG 60.738 63.158 0.00 0.0 0.00 4.45 F
2701 3001 3.571590 ACACCCAGGCAAGAAAACATAA 58.428 40.909 0.00 0.0 0.00 1.90 F
3453 3767 3.879998 TGCACTTAAGTCACCTGAACAA 58.120 40.909 4.77 0.0 0.00 2.83 F
4788 5104 1.274167 TCTTATGCCGTGTTCCGTTCT 59.726 47.619 0.00 0.0 33.66 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1998 0.734942 CGCTGCTGGCTGAAAATTGG 60.735 55.000 0.00 0.0 39.13 3.16 R
2987 3287 2.047274 CACCCACGCTACACCCAG 60.047 66.667 0.00 0.0 0.00 4.45 R
3697 4013 1.134521 ACGAGCAGTTCCAGTCAACAA 60.135 47.619 0.00 0.0 0.00 2.83 R
4139 4455 1.335810 CCTTCATCATCCCGCACAATG 59.664 52.381 0.00 0.0 0.00 2.82 R
4501 4817 3.572255 TGGCGCTTCCAAATTAAGAAGTT 59.428 39.130 7.64 0.0 43.21 2.66 R
4580 4896 3.664537 GCGACGCCTAGCTAAAAATATGC 60.665 47.826 9.14 0.0 0.00 3.14 R
4870 5189 0.324285 AAGGCAGAGCACCTTGAGAG 59.676 55.000 0.00 0.0 45.88 3.20 R
6088 6442 0.662619 CATGTTGTGACAAGTGCCGT 59.337 50.000 0.00 0.0 39.66 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.785357 AGATGGAAGGAGGGAGTAGG 57.215 55.000 0.00 0.00 0.00 3.18
21 22 2.227703 AGATGGAAGGAGGGAGTAGGA 58.772 52.381 0.00 0.00 0.00 2.94
22 23 2.800788 AGATGGAAGGAGGGAGTAGGAT 59.199 50.000 0.00 0.00 0.00 3.24
23 24 3.997856 AGATGGAAGGAGGGAGTAGGATA 59.002 47.826 0.00 0.00 0.00 2.59
24 25 3.905493 TGGAAGGAGGGAGTAGGATAG 57.095 52.381 0.00 0.00 0.00 2.08
25 26 3.140143 TGGAAGGAGGGAGTAGGATAGT 58.860 50.000 0.00 0.00 0.00 2.12
26 27 4.322168 TGGAAGGAGGGAGTAGGATAGTA 58.678 47.826 0.00 0.00 0.00 1.82
27 28 4.926987 TGGAAGGAGGGAGTAGGATAGTAT 59.073 45.833 0.00 0.00 0.00 2.12
28 29 5.378985 TGGAAGGAGGGAGTAGGATAGTATT 59.621 44.000 0.00 0.00 0.00 1.89
29 30 6.125561 TGGAAGGAGGGAGTAGGATAGTATTT 60.126 42.308 0.00 0.00 0.00 1.40
30 31 6.438108 GGAAGGAGGGAGTAGGATAGTATTTC 59.562 46.154 0.00 0.00 0.00 2.17
31 32 5.906254 AGGAGGGAGTAGGATAGTATTTCC 58.094 45.833 0.00 0.00 0.00 3.13
32 33 5.622204 AGGAGGGAGTAGGATAGTATTTCCT 59.378 44.000 0.00 0.00 45.59 3.36
33 34 5.953548 GGAGGGAGTAGGATAGTATTTCCTC 59.046 48.000 0.00 0.00 42.69 3.71
34 35 5.906254 AGGGAGTAGGATAGTATTTCCTCC 58.094 45.833 0.00 3.79 42.69 4.30
35 36 4.705991 GGGAGTAGGATAGTATTTCCTCCG 59.294 50.000 0.00 0.00 42.69 4.63
36 37 5.323581 GGAGTAGGATAGTATTTCCTCCGT 58.676 45.833 0.00 0.00 42.69 4.69
37 38 6.479884 GGAGTAGGATAGTATTTCCTCCGTA 58.520 44.000 0.00 0.00 42.69 4.02
38 39 6.944862 GGAGTAGGATAGTATTTCCTCCGTAA 59.055 42.308 0.00 0.00 42.69 3.18
39 40 7.449704 GGAGTAGGATAGTATTTCCTCCGTAAA 59.550 40.741 0.00 0.00 42.69 2.01
40 41 8.406730 AGTAGGATAGTATTTCCTCCGTAAAG 57.593 38.462 0.00 0.00 42.69 1.85
41 42 8.223330 AGTAGGATAGTATTTCCTCCGTAAAGA 58.777 37.037 0.00 0.00 42.69 2.52
42 43 7.909485 AGGATAGTATTTCCTCCGTAAAGAA 57.091 36.000 0.00 0.00 39.46 2.52
43 44 8.315220 AGGATAGTATTTCCTCCGTAAAGAAA 57.685 34.615 0.00 0.00 39.46 2.52
44 45 8.935741 AGGATAGTATTTCCTCCGTAAAGAAAT 58.064 33.333 0.00 0.00 39.46 2.17
52 53 7.909485 TTCCTCCGTAAAGAAATATACTCCT 57.091 36.000 0.00 0.00 0.00 3.69
53 54 9.425248 TTTCCTCCGTAAAGAAATATACTCCTA 57.575 33.333 0.00 0.00 0.00 2.94
54 55 8.632906 TCCTCCGTAAAGAAATATACTCCTAG 57.367 38.462 0.00 0.00 0.00 3.02
55 56 8.443176 TCCTCCGTAAAGAAATATACTCCTAGA 58.557 37.037 0.00 0.00 0.00 2.43
56 57 9.075678 CCTCCGTAAAGAAATATACTCCTAGAA 57.924 37.037 0.00 0.00 0.00 2.10
73 74 9.981460 ACTCCTAGAATTAATGATTGTTTTCCT 57.019 29.630 0.00 0.00 0.00 3.36
75 76 9.753674 TCCTAGAATTAATGATTGTTTTCCTGT 57.246 29.630 0.00 0.00 0.00 4.00
81 82 9.829507 AATTAATGATTGTTTTCCTGTTTGTCA 57.170 25.926 0.00 0.00 0.00 3.58
83 84 9.829507 TTAATGATTGTTTTCCTGTTTGTCATT 57.170 25.926 0.00 0.00 37.49 2.57
84 85 7.718272 ATGATTGTTTTCCTGTTTGTCATTG 57.282 32.000 0.00 0.00 0.00 2.82
85 86 6.047870 TGATTGTTTTCCTGTTTGTCATTGG 58.952 36.000 0.00 0.00 0.00 3.16
86 87 5.667539 TTGTTTTCCTGTTTGTCATTGGA 57.332 34.783 0.00 0.00 0.00 3.53
87 88 5.667539 TGTTTTCCTGTTTGTCATTGGAA 57.332 34.783 0.00 0.00 35.31 3.53
88 89 6.042638 TGTTTTCCTGTTTGTCATTGGAAA 57.957 33.333 0.00 0.00 42.72 3.13
89 90 6.105333 TGTTTTCCTGTTTGTCATTGGAAAG 58.895 36.000 0.00 0.00 44.34 2.62
90 91 6.071108 TGTTTTCCTGTTTGTCATTGGAAAGA 60.071 34.615 0.00 0.00 44.34 2.52
91 92 6.537453 TTTCCTGTTTGTCATTGGAAAGAA 57.463 33.333 0.00 0.00 40.52 2.52
92 93 5.514274 TCCTGTTTGTCATTGGAAAGAAC 57.486 39.130 0.00 0.00 0.00 3.01
93 94 4.036262 TCCTGTTTGTCATTGGAAAGAACG 59.964 41.667 0.00 0.00 0.00 3.95
94 95 4.290155 CTGTTTGTCATTGGAAAGAACGG 58.710 43.478 0.00 0.00 0.00 4.44
95 96 3.948473 TGTTTGTCATTGGAAAGAACGGA 59.052 39.130 0.00 0.00 0.00 4.69
96 97 4.399618 TGTTTGTCATTGGAAAGAACGGAA 59.600 37.500 0.00 0.00 0.00 4.30
97 98 5.105716 TGTTTGTCATTGGAAAGAACGGAAA 60.106 36.000 0.00 0.00 0.00 3.13
98 99 5.584253 TTGTCATTGGAAAGAACGGAAAA 57.416 34.783 0.00 0.00 0.00 2.29
99 100 5.181690 TGTCATTGGAAAGAACGGAAAAG 57.818 39.130 0.00 0.00 0.00 2.27
100 101 3.981416 GTCATTGGAAAGAACGGAAAAGC 59.019 43.478 0.00 0.00 0.00 3.51
101 102 3.634448 TCATTGGAAAGAACGGAAAAGCA 59.366 39.130 0.00 0.00 0.00 3.91
102 103 4.280677 TCATTGGAAAGAACGGAAAAGCAT 59.719 37.500 0.00 0.00 0.00 3.79
103 104 4.664150 TTGGAAAGAACGGAAAAGCATT 57.336 36.364 0.00 0.00 0.00 3.56
104 105 3.976169 TGGAAAGAACGGAAAAGCATTG 58.024 40.909 0.00 0.00 0.00 2.82
105 106 3.383185 TGGAAAGAACGGAAAAGCATTGT 59.617 39.130 0.00 0.00 0.00 2.71
106 107 4.580995 TGGAAAGAACGGAAAAGCATTGTA 59.419 37.500 0.00 0.00 0.00 2.41
107 108 5.242838 TGGAAAGAACGGAAAAGCATTGTAT 59.757 36.000 0.00 0.00 0.00 2.29
108 109 6.156519 GGAAAGAACGGAAAAGCATTGTATT 58.843 36.000 0.00 0.00 0.00 1.89
109 110 6.308041 GGAAAGAACGGAAAAGCATTGTATTC 59.692 38.462 0.00 0.00 0.00 1.75
110 111 5.310720 AGAACGGAAAAGCATTGTATTCC 57.689 39.130 7.00 7.00 38.35 3.01
111 112 5.010282 AGAACGGAAAAGCATTGTATTCCT 58.990 37.500 12.34 0.17 39.33 3.36
112 113 4.965119 ACGGAAAAGCATTGTATTCCTC 57.035 40.909 12.34 0.00 39.33 3.71
113 114 3.694566 ACGGAAAAGCATTGTATTCCTCC 59.305 43.478 12.34 5.74 39.33 4.30
114 115 3.947834 CGGAAAAGCATTGTATTCCTCCT 59.052 43.478 12.34 0.00 39.33 3.69
115 116 5.123227 CGGAAAAGCATTGTATTCCTCCTA 58.877 41.667 12.34 0.00 39.33 2.94
116 117 5.237344 CGGAAAAGCATTGTATTCCTCCTAG 59.763 44.000 12.34 0.00 39.33 3.02
117 118 6.357367 GGAAAAGCATTGTATTCCTCCTAGA 58.643 40.000 0.00 0.00 38.61 2.43
118 119 6.828785 GGAAAAGCATTGTATTCCTCCTAGAA 59.171 38.462 0.00 0.00 38.61 2.10
119 120 7.339466 GGAAAAGCATTGTATTCCTCCTAGAAA 59.661 37.037 0.00 0.00 38.61 2.52
120 121 8.650143 AAAAGCATTGTATTCCTCCTAGAAAA 57.350 30.769 0.00 0.00 0.00 2.29
121 122 8.829373 AAAGCATTGTATTCCTCCTAGAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
122 123 7.814264 AGCATTGTATTCCTCCTAGAAAATG 57.186 36.000 0.00 0.00 30.14 2.32
123 124 7.577303 AGCATTGTATTCCTCCTAGAAAATGA 58.423 34.615 0.00 0.00 29.09 2.57
124 125 7.500559 AGCATTGTATTCCTCCTAGAAAATGAC 59.499 37.037 0.00 0.00 29.09 3.06
125 126 7.283127 GCATTGTATTCCTCCTAGAAAATGACA 59.717 37.037 0.00 0.00 29.09 3.58
126 127 8.616076 CATTGTATTCCTCCTAGAAAATGACAC 58.384 37.037 0.00 0.00 29.09 3.67
127 128 7.252612 TGTATTCCTCCTAGAAAATGACACA 57.747 36.000 0.00 0.00 0.00 3.72
128 129 7.685481 TGTATTCCTCCTAGAAAATGACACAA 58.315 34.615 0.00 0.00 0.00 3.33
129 130 7.606456 TGTATTCCTCCTAGAAAATGACACAAC 59.394 37.037 0.00 0.00 0.00 3.32
130 131 5.560722 TCCTCCTAGAAAATGACACAACA 57.439 39.130 0.00 0.00 0.00 3.33
131 132 5.551233 TCCTCCTAGAAAATGACACAACAG 58.449 41.667 0.00 0.00 0.00 3.16
132 133 4.697352 CCTCCTAGAAAATGACACAACAGG 59.303 45.833 0.00 0.00 0.00 4.00
133 134 5.304686 TCCTAGAAAATGACACAACAGGT 57.695 39.130 0.00 0.00 0.00 4.00
134 135 6.428083 TCCTAGAAAATGACACAACAGGTA 57.572 37.500 0.00 0.00 0.00 3.08
135 136 6.833041 TCCTAGAAAATGACACAACAGGTAA 58.167 36.000 0.00 0.00 0.00 2.85
136 137 7.284074 TCCTAGAAAATGACACAACAGGTAAA 58.716 34.615 0.00 0.00 0.00 2.01
137 138 7.776030 TCCTAGAAAATGACACAACAGGTAAAA 59.224 33.333 0.00 0.00 0.00 1.52
138 139 8.410141 CCTAGAAAATGACACAACAGGTAAAAA 58.590 33.333 0.00 0.00 0.00 1.94
139 140 9.965824 CTAGAAAATGACACAACAGGTAAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
145 146 9.744468 AATGACACAACAGGTAAAAATAAGAAC 57.256 29.630 0.00 0.00 0.00 3.01
146 147 7.411274 TGACACAACAGGTAAAAATAAGAACG 58.589 34.615 0.00 0.00 0.00 3.95
147 148 6.731164 ACACAACAGGTAAAAATAAGAACGG 58.269 36.000 0.00 0.00 0.00 4.44
148 149 6.543100 ACACAACAGGTAAAAATAAGAACGGA 59.457 34.615 0.00 0.00 0.00 4.69
149 150 7.075741 CACAACAGGTAAAAATAAGAACGGAG 58.924 38.462 0.00 0.00 0.00 4.63
150 151 6.993902 ACAACAGGTAAAAATAAGAACGGAGA 59.006 34.615 0.00 0.00 0.00 3.71
151 152 7.499895 ACAACAGGTAAAAATAAGAACGGAGAA 59.500 33.333 0.00 0.00 0.00 2.87
152 153 7.668525 ACAGGTAAAAATAAGAACGGAGAAG 57.331 36.000 0.00 0.00 0.00 2.85
153 154 7.447594 ACAGGTAAAAATAAGAACGGAGAAGA 58.552 34.615 0.00 0.00 0.00 2.87
154 155 8.101419 ACAGGTAAAAATAAGAACGGAGAAGAT 58.899 33.333 0.00 0.00 0.00 2.40
155 156 8.947115 CAGGTAAAAATAAGAACGGAGAAGATT 58.053 33.333 0.00 0.00 0.00 2.40
156 157 9.163899 AGGTAAAAATAAGAACGGAGAAGATTC 57.836 33.333 0.00 0.00 0.00 2.52
157 158 8.114905 GGTAAAAATAAGAACGGAGAAGATTCG 58.885 37.037 0.00 0.00 0.00 3.34
158 159 6.663944 AAAATAAGAACGGAGAAGATTCGG 57.336 37.500 0.00 0.00 0.00 4.30
159 160 5.340439 AATAAGAACGGAGAAGATTCGGT 57.660 39.130 0.00 0.00 32.74 4.69
160 161 2.656560 AGAACGGAGAAGATTCGGTG 57.343 50.000 0.00 0.00 31.91 4.94
161 162 2.168496 AGAACGGAGAAGATTCGGTGA 58.832 47.619 0.00 0.00 31.91 4.02
162 163 2.761208 AGAACGGAGAAGATTCGGTGAT 59.239 45.455 0.00 0.00 31.91 3.06
163 164 3.952323 AGAACGGAGAAGATTCGGTGATA 59.048 43.478 0.00 0.00 31.91 2.15
164 165 3.712091 ACGGAGAAGATTCGGTGATAC 57.288 47.619 0.00 0.00 30.56 2.24
165 166 2.033049 ACGGAGAAGATTCGGTGATACG 59.967 50.000 0.00 0.00 30.56 3.06
166 167 2.289820 CGGAGAAGATTCGGTGATACGA 59.710 50.000 0.00 0.00 41.76 3.43
172 173 3.733236 TTCGGTGATACGAAGCTGG 57.267 52.632 0.00 0.00 46.68 4.85
173 174 0.892755 TTCGGTGATACGAAGCTGGT 59.107 50.000 0.00 0.00 46.68 4.00
174 175 0.454600 TCGGTGATACGAAGCTGGTC 59.545 55.000 0.00 0.00 40.34 4.02
175 176 0.527817 CGGTGATACGAAGCTGGTCC 60.528 60.000 0.00 0.00 35.47 4.46
176 177 0.535335 GGTGATACGAAGCTGGTCCA 59.465 55.000 0.00 0.00 0.00 4.02
177 178 1.139058 GGTGATACGAAGCTGGTCCAT 59.861 52.381 0.00 0.00 0.00 3.41
178 179 2.420129 GGTGATACGAAGCTGGTCCATT 60.420 50.000 0.00 0.00 0.00 3.16
179 180 3.270877 GTGATACGAAGCTGGTCCATTT 58.729 45.455 0.00 0.00 0.00 2.32
180 181 3.689649 GTGATACGAAGCTGGTCCATTTT 59.310 43.478 0.00 0.00 0.00 1.82
181 182 4.873827 GTGATACGAAGCTGGTCCATTTTA 59.126 41.667 0.00 0.00 0.00 1.52
182 183 4.873827 TGATACGAAGCTGGTCCATTTTAC 59.126 41.667 0.00 0.00 0.00 2.01
183 184 3.134574 ACGAAGCTGGTCCATTTTACA 57.865 42.857 0.00 0.00 0.00 2.41
184 185 3.482436 ACGAAGCTGGTCCATTTTACAA 58.518 40.909 0.00 0.00 0.00 2.41
185 186 3.502211 ACGAAGCTGGTCCATTTTACAAG 59.498 43.478 0.00 0.00 0.00 3.16
186 187 3.670627 CGAAGCTGGTCCATTTTACAAGC 60.671 47.826 0.00 0.00 43.13 4.01
187 188 1.812571 AGCTGGTCCATTTTACAAGCG 59.187 47.619 0.00 0.00 46.60 4.68
188 189 1.810151 GCTGGTCCATTTTACAAGCGA 59.190 47.619 0.00 0.00 34.35 4.93
189 190 2.423538 GCTGGTCCATTTTACAAGCGAT 59.576 45.455 0.00 0.00 34.35 4.58
190 191 3.487544 GCTGGTCCATTTTACAAGCGATC 60.488 47.826 0.00 0.00 34.35 3.69
191 192 3.013921 TGGTCCATTTTACAAGCGATCC 58.986 45.455 0.00 0.00 0.00 3.36
192 193 3.013921 GGTCCATTTTACAAGCGATCCA 58.986 45.455 0.00 0.00 0.00 3.41
193 194 3.181500 GGTCCATTTTACAAGCGATCCAC 60.181 47.826 0.00 0.00 0.00 4.02
194 195 3.689649 GTCCATTTTACAAGCGATCCACT 59.310 43.478 0.00 0.00 0.00 4.00
195 196 4.873827 GTCCATTTTACAAGCGATCCACTA 59.126 41.667 0.00 0.00 0.00 2.74
196 197 5.527582 GTCCATTTTACAAGCGATCCACTAT 59.472 40.000 0.00 0.00 0.00 2.12
197 198 6.038271 GTCCATTTTACAAGCGATCCACTATT 59.962 38.462 0.00 0.00 0.00 1.73
198 199 6.601613 TCCATTTTACAAGCGATCCACTATTT 59.398 34.615 0.00 0.00 0.00 1.40
199 200 7.122055 TCCATTTTACAAGCGATCCACTATTTT 59.878 33.333 0.00 0.00 0.00 1.82
200 201 7.432252 CCATTTTACAAGCGATCCACTATTTTC 59.568 37.037 0.00 0.00 0.00 2.29
201 202 6.431198 TTTACAAGCGATCCACTATTTTCC 57.569 37.500 0.00 0.00 0.00 3.13
202 203 3.950397 ACAAGCGATCCACTATTTTCCA 58.050 40.909 0.00 0.00 0.00 3.53
203 204 4.526970 ACAAGCGATCCACTATTTTCCAT 58.473 39.130 0.00 0.00 0.00 3.41
204 205 4.576463 ACAAGCGATCCACTATTTTCCATC 59.424 41.667 0.00 0.00 0.00 3.51
205 206 3.744660 AGCGATCCACTATTTTCCATCC 58.255 45.455 0.00 0.00 0.00 3.51
206 207 2.814336 GCGATCCACTATTTTCCATCCC 59.186 50.000 0.00 0.00 0.00 3.85
207 208 3.067106 CGATCCACTATTTTCCATCCCG 58.933 50.000 0.00 0.00 0.00 5.14
208 209 3.244078 CGATCCACTATTTTCCATCCCGA 60.244 47.826 0.00 0.00 0.00 5.14
209 210 4.714632 GATCCACTATTTTCCATCCCGAA 58.285 43.478 0.00 0.00 0.00 4.30
210 211 4.150897 TCCACTATTTTCCATCCCGAAG 57.849 45.455 0.00 0.00 0.00 3.79
211 212 3.778075 TCCACTATTTTCCATCCCGAAGA 59.222 43.478 0.00 0.00 0.00 2.87
212 213 4.412199 TCCACTATTTTCCATCCCGAAGAT 59.588 41.667 0.00 0.00 34.66 2.40
213 214 4.757149 CCACTATTTTCCATCCCGAAGATC 59.243 45.833 0.00 0.00 30.59 2.75
214 215 5.368145 CACTATTTTCCATCCCGAAGATCA 58.632 41.667 0.00 0.00 30.59 2.92
215 216 6.000219 CACTATTTTCCATCCCGAAGATCAT 59.000 40.000 0.00 0.00 30.59 2.45
216 217 7.161404 CACTATTTTCCATCCCGAAGATCATA 58.839 38.462 0.00 0.00 30.59 2.15
217 218 7.118390 CACTATTTTCCATCCCGAAGATCATAC 59.882 40.741 0.00 0.00 30.59 2.39
218 219 5.366482 TTTTCCATCCCGAAGATCATACA 57.634 39.130 0.00 0.00 30.59 2.29
219 220 4.336889 TTCCATCCCGAAGATCATACAC 57.663 45.455 0.00 0.00 30.59 2.90
220 221 2.632996 TCCATCCCGAAGATCATACACC 59.367 50.000 0.00 0.00 30.59 4.16
221 222 2.289694 CCATCCCGAAGATCATACACCC 60.290 54.545 0.00 0.00 30.59 4.61
222 223 2.168458 TCCCGAAGATCATACACCCA 57.832 50.000 0.00 0.00 0.00 4.51
223 224 2.039418 TCCCGAAGATCATACACCCAG 58.961 52.381 0.00 0.00 0.00 4.45
224 225 2.039418 CCCGAAGATCATACACCCAGA 58.961 52.381 0.00 0.00 0.00 3.86
225 226 2.036475 CCCGAAGATCATACACCCAGAG 59.964 54.545 0.00 0.00 0.00 3.35
226 227 2.546795 CCGAAGATCATACACCCAGAGC 60.547 54.545 0.00 0.00 0.00 4.09
227 228 2.546795 CGAAGATCATACACCCAGAGCC 60.547 54.545 0.00 0.00 0.00 4.70
228 229 2.180946 AGATCATACACCCAGAGCCA 57.819 50.000 0.00 0.00 0.00 4.75
229 230 2.045524 AGATCATACACCCAGAGCCAG 58.954 52.381 0.00 0.00 0.00 4.85
230 231 2.042464 GATCATACACCCAGAGCCAGA 58.958 52.381 0.00 0.00 0.00 3.86
231 232 1.489481 TCATACACCCAGAGCCAGAG 58.511 55.000 0.00 0.00 0.00 3.35
232 233 0.179062 CATACACCCAGAGCCAGAGC 60.179 60.000 0.00 0.00 40.32 4.09
233 234 1.680522 ATACACCCAGAGCCAGAGCG 61.681 60.000 0.00 0.00 46.67 5.03
234 235 2.781431 TACACCCAGAGCCAGAGCGA 62.781 60.000 0.00 0.00 46.67 4.93
235 236 2.364842 ACCCAGAGCCAGAGCGAT 60.365 61.111 0.00 0.00 46.67 4.58
236 237 2.420890 CCCAGAGCCAGAGCGATC 59.579 66.667 0.00 0.00 46.67 3.69
237 238 2.429767 CCCAGAGCCAGAGCGATCA 61.430 63.158 2.38 0.00 46.67 2.92
238 239 1.747145 CCAGAGCCAGAGCGATCAT 59.253 57.895 2.38 0.00 46.67 2.45
239 240 0.106335 CCAGAGCCAGAGCGATCATT 59.894 55.000 2.38 0.00 46.67 2.57
240 241 1.342496 CCAGAGCCAGAGCGATCATTA 59.658 52.381 2.38 0.00 46.67 1.90
241 242 2.402305 CAGAGCCAGAGCGATCATTAC 58.598 52.381 2.38 0.00 46.67 1.89
242 243 2.034878 AGAGCCAGAGCGATCATTACA 58.965 47.619 2.38 0.00 46.67 2.41
243 244 2.035704 AGAGCCAGAGCGATCATTACAG 59.964 50.000 2.38 0.00 46.67 2.74
244 245 2.034878 AGCCAGAGCGATCATTACAGA 58.965 47.619 2.38 0.00 46.67 3.41
245 246 2.632028 AGCCAGAGCGATCATTACAGAT 59.368 45.455 2.38 0.00 46.67 2.90
246 247 3.829026 AGCCAGAGCGATCATTACAGATA 59.171 43.478 2.38 0.00 46.67 1.98
247 248 4.465660 AGCCAGAGCGATCATTACAGATAT 59.534 41.667 2.38 0.00 46.67 1.63
248 249 5.654209 AGCCAGAGCGATCATTACAGATATA 59.346 40.000 2.38 0.00 46.67 0.86
249 250 6.323482 AGCCAGAGCGATCATTACAGATATAT 59.677 38.462 2.38 0.00 46.67 0.86
250 251 7.503902 AGCCAGAGCGATCATTACAGATATATA 59.496 37.037 2.38 0.00 46.67 0.86
251 252 7.807433 GCCAGAGCGATCATTACAGATATATAG 59.193 40.741 2.38 0.00 0.00 1.31
252 253 8.296000 CCAGAGCGATCATTACAGATATATAGG 58.704 40.741 2.38 0.00 0.00 2.57
253 254 8.296000 CAGAGCGATCATTACAGATATATAGGG 58.704 40.741 2.38 0.00 0.00 3.53
266 267 9.159254 ACAGATATATAGGGACAACAAGAATCA 57.841 33.333 0.00 0.00 0.00 2.57
375 376 4.032960 TGTGGACTAATGGACTTGCATT 57.967 40.909 1.38 1.38 0.00 3.56
380 638 4.095483 GGACTAATGGACTTGCATTCAGTG 59.905 45.833 0.00 0.00 0.00 3.66
398 656 2.956333 AGTGCCCCAAAGTAAACAAGAC 59.044 45.455 0.00 0.00 0.00 3.01
412 670 8.664211 AGTAAACAAGACTATATTTAGCAGCC 57.336 34.615 0.00 0.00 0.00 4.85
413 671 8.265055 AGTAAACAAGACTATATTTAGCAGCCA 58.735 33.333 0.00 0.00 0.00 4.75
414 672 7.938140 AAACAAGACTATATTTAGCAGCCAA 57.062 32.000 0.00 0.00 0.00 4.52
415 673 7.938140 AACAAGACTATATTTAGCAGCCAAA 57.062 32.000 0.00 0.00 0.00 3.28
416 674 7.938140 ACAAGACTATATTTAGCAGCCAAAA 57.062 32.000 0.00 0.00 0.00 2.44
417 675 8.348285 ACAAGACTATATTTAGCAGCCAAAAA 57.652 30.769 0.00 0.00 0.00 1.94
534 793 3.261981 AGGCGAATAATTCCGACTTGT 57.738 42.857 0.00 0.00 42.15 3.16
543 802 1.272807 TTCCGACTTGTAGGAAGGGG 58.727 55.000 10.53 0.00 41.19 4.79
577 837 1.671054 CGTCGGCAAGTGTTCCCAT 60.671 57.895 0.00 0.00 0.00 4.00
621 881 2.847234 TTGGACTCCCGCACCACT 60.847 61.111 0.00 0.00 33.20 4.00
674 934 2.279069 CCCGGCAGTCAGTGACTCT 61.279 63.158 23.08 0.39 41.37 3.24
692 952 6.761714 GTGACTCTTAACCTTTTGAACTCAGA 59.238 38.462 0.00 0.00 0.00 3.27
933 1213 2.026879 CCACGCACCAAAAACCGG 59.973 61.111 0.00 0.00 0.00 5.28
1300 1589 4.074526 GCGTGGAGGAGCTGCTCA 62.075 66.667 32.72 18.18 31.08 4.26
1480 1769 0.610687 CTTTCTTCTCTCGCCACCCT 59.389 55.000 0.00 0.00 0.00 4.34
1508 1797 2.334838 GTCACCTGAATTTCGCTACGT 58.665 47.619 0.00 0.00 0.00 3.57
1529 1818 1.453155 CCGCACTTTGCATACTTCCT 58.547 50.000 0.00 0.00 45.36 3.36
1554 1843 1.815003 CAAGCACCTCTGGTCATTTCC 59.185 52.381 0.00 0.00 31.02 3.13
1706 1998 8.347771 TGATTTCAGCTTGTATTTCTATGCATC 58.652 33.333 0.19 0.00 0.00 3.91
1710 2002 6.774170 TCAGCTTGTATTTCTATGCATCCAAT 59.226 34.615 0.19 2.76 0.00 3.16
1743 2035 1.263217 GCGGATGCTAAACATTACGGG 59.737 52.381 0.00 0.00 39.84 5.28
2101 2394 6.721318 TCCTTGGATAAGAGTGCTAACAATT 58.279 36.000 0.00 0.00 35.92 2.32
2102 2395 6.823689 TCCTTGGATAAGAGTGCTAACAATTC 59.176 38.462 0.00 0.00 35.92 2.17
2106 2399 8.044060 TGGATAAGAGTGCTAACAATTCTTTG 57.956 34.615 1.00 0.00 35.09 2.77
2276 2569 6.867816 TGCTGATTTGATTGGTTTGACATAAC 59.132 34.615 0.00 0.00 0.00 1.89
2468 2768 5.986004 AGTTGCACACTGAAGTTTAGTAC 57.014 39.130 0.00 0.00 32.83 2.73
2581 2881 1.429930 TCCTACAACTCACCTTGGCA 58.570 50.000 0.00 0.00 0.00 4.92
2666 2966 8.919777 AAATATTATTACTACACCCCAGCTTC 57.080 34.615 0.00 0.00 0.00 3.86
2673 2973 3.560251 ACCCCAGCTTCGTGCACT 61.560 61.111 16.19 0.00 45.94 4.40
2687 2987 1.738099 GCACTCACGCTACACCCAG 60.738 63.158 0.00 0.00 0.00 4.45
2701 3001 3.571590 ACACCCAGGCAAGAAAACATAA 58.428 40.909 0.00 0.00 0.00 1.90
2712 3012 8.611757 AGGCAAGAAAACATAACAAAACATTTC 58.388 29.630 0.00 0.00 0.00 2.17
2837 3137 7.661127 AATTACTCAAAATGTACGTGCACTA 57.339 32.000 16.19 3.60 0.00 2.74
2921 3221 7.037438 CACCAAACTTTGCAAGCATCTATAAT 58.963 34.615 0.00 0.00 0.00 1.28
2987 3287 6.544038 AATGTTTTGCTATGTTTTCTTGCC 57.456 33.333 0.00 0.00 0.00 4.52
2990 3290 3.940209 TTGCTATGTTTTCTTGCCTGG 57.060 42.857 0.00 0.00 0.00 4.45
3041 3354 6.099269 GGTTCCCTTATGGAGTTATCACAGTA 59.901 42.308 0.00 0.00 46.24 2.74
3099 3412 8.989980 ACTTAATACAGTTTCAGTCTAAACAGC 58.010 33.333 0.00 0.00 40.97 4.40
3103 3416 6.759497 ACAGTTTCAGTCTAAACAGCTTTT 57.241 33.333 0.00 0.00 40.97 2.27
3157 3471 5.242171 TGATTTGGGCTATGCTTATCATGTG 59.758 40.000 0.00 0.00 36.63 3.21
3201 3515 5.295540 TCTGTCGTCATATCAACTCAGAGAG 59.704 44.000 3.79 0.00 35.52 3.20
3378 3692 7.697710 GCATGTATTCACTTTTGATCATTTCGA 59.302 33.333 0.00 0.00 0.00 3.71
3453 3767 3.879998 TGCACTTAAGTCACCTGAACAA 58.120 40.909 4.77 0.00 0.00 2.83
3538 3854 6.493115 ACTCTTCTATCATCGATGACTGGATT 59.507 38.462 29.49 15.39 40.03 3.01
3697 4013 8.579850 TTCAAAGCTGTATCTACCATTTGAAT 57.420 30.769 14.17 0.00 36.75 2.57
3888 4204 9.811995 ATCACAAATGATTTATGAAGTTCATGG 57.188 29.630 25.48 0.50 43.40 3.66
3894 4210 6.662755 TGATTTATGAAGTTCATGGGCTAGT 58.337 36.000 25.48 2.82 37.70 2.57
3895 4211 7.118723 TGATTTATGAAGTTCATGGGCTAGTT 58.881 34.615 25.48 2.12 37.70 2.24
3917 4233 8.084590 AGTTTTTGTATTCTGTTCTTCTACCG 57.915 34.615 0.00 0.00 0.00 4.02
4037 4353 4.569943 TGATCTGTCACCAAAGTAAGCTC 58.430 43.478 0.00 0.00 0.00 4.09
4501 4817 8.058667 TCTTTACGAGGTATGTAATCTGTCAA 57.941 34.615 0.00 0.00 32.28 3.18
4580 4896 4.782195 GCCAGTACGTAATTCAAATGAGCG 60.782 45.833 0.00 0.00 0.00 5.03
4595 4911 7.355017 TCAAATGAGCGCATATTTTTAGCTAG 58.645 34.615 11.47 2.68 38.39 3.42
4606 4922 2.203972 TTTAGCTAGGCGTCGCACGT 62.204 55.000 20.50 5.36 44.73 4.49
4780 5096 5.086104 AGTAAGTGAATCTTATGCCGTGT 57.914 39.130 0.00 0.00 40.23 4.49
4781 5097 5.488341 AGTAAGTGAATCTTATGCCGTGTT 58.512 37.500 0.00 0.00 40.23 3.32
4788 5104 1.274167 TCTTATGCCGTGTTCCGTTCT 59.726 47.619 0.00 0.00 33.66 3.01
4819 5135 7.043325 CCTCTTTACTCGTAGTCATATGTTTGC 60.043 40.741 1.90 0.00 0.00 3.68
4887 5206 0.540923 ATCTCTCAAGGTGCTCTGCC 59.459 55.000 0.00 0.00 0.00 4.85
4938 5257 0.737219 GCCACAGCCATCACTGATTC 59.263 55.000 0.00 0.00 40.25 2.52
4945 5264 3.192844 CAGCCATCACTGATTCTTTGCTT 59.807 43.478 0.00 0.00 40.25 3.91
4963 5282 1.822990 CTTGTAGGCAGGTCGTCCTTA 59.177 52.381 0.00 0.00 43.07 2.69
4979 5298 5.690409 TCGTCCTTAGCTTAATTTCGCTATG 59.310 40.000 0.00 10.19 38.42 2.23
5074 5393 4.510340 GCCAACGTTCTCGGATATAATTGT 59.490 41.667 7.30 0.00 41.85 2.71
5141 5460 3.006967 GGAGAGACAACTTCAAGCTACCA 59.993 47.826 0.00 0.00 0.00 3.25
5168 5487 2.374184 AGCTCTCGCTGATCTAACTGT 58.626 47.619 0.00 0.00 46.86 3.55
5178 5497 6.871492 TCGCTGATCTAACTGTAAAAACATGA 59.129 34.615 0.00 0.00 0.00 3.07
5278 5597 7.039082 AGGTAATTAATTTGATGGTGTGTTGCT 60.039 33.333 5.91 0.00 0.00 3.91
5290 5609 5.777802 TGGTGTGTTGCTTTATTGGTAATG 58.222 37.500 0.00 0.00 0.00 1.90
5321 5640 5.745769 GGCTTATAGTTGAAATTGCTTCAGC 59.254 40.000 0.00 0.00 44.84 4.26
5338 5657 6.102663 GCTTCAGCTCATTTCAGTAACTCTA 58.897 40.000 0.00 0.00 38.21 2.43
5343 5664 7.124901 TCAGCTCATTTCAGTAACTCTAGGAAT 59.875 37.037 0.00 0.00 0.00 3.01
5344 5665 8.417106 CAGCTCATTTCAGTAACTCTAGGAATA 58.583 37.037 0.00 0.00 0.00 1.75
5389 5710 6.395426 TGATCTACCATCAAAATCCATTGC 57.605 37.500 0.00 0.00 0.00 3.56
5391 5712 5.581126 TCTACCATCAAAATCCATTGCAC 57.419 39.130 0.00 0.00 0.00 4.57
5397 5718 2.905085 TCAAAATCCATTGCACCATGGT 59.095 40.909 13.00 13.00 38.97 3.55
5534 5855 8.767085 CACGGTGAAAATTATATTGGTATACGT 58.233 33.333 0.74 0.00 0.00 3.57
5667 5988 7.701539 TGTATTAAGTTCCTGAATGTTGCAT 57.298 32.000 0.00 0.00 0.00 3.96
5698 6019 1.068741 ACGATATGCCTCCGAAAGTCC 59.931 52.381 0.00 0.00 0.00 3.85
5699 6020 1.068588 CGATATGCCTCCGAAAGTCCA 59.931 52.381 0.00 0.00 0.00 4.02
5705 6026 2.290896 TGCCTCCGAAAGTCCAAATGAT 60.291 45.455 0.00 0.00 0.00 2.45
5804 6125 7.202526 TGCAAAAGTTCAGGTATTCTTTCTTG 58.797 34.615 0.00 0.00 31.12 3.02
5904 6235 3.449377 GCAGAGGAGGAATATACCTAGGC 59.551 52.174 9.30 0.00 40.73 3.93
5941 6272 7.592938 TGATTCTAACATTTTCATGCGAAAGT 58.407 30.769 0.00 0.00 42.00 2.66
5969 6300 0.824595 ACAGAGCAAAGCACATGCCA 60.825 50.000 0.00 0.00 44.91 4.92
6033 6365 8.898983 TTTACGTTTTTAGCATTAGTATTGCC 57.101 30.769 12.31 0.00 41.06 4.52
6052 6384 4.331968 TGCCAAATCACTAGTTAAGGGTG 58.668 43.478 0.00 0.00 0.00 4.61
6058 6394 4.634012 TCACTAGTTAAGGGTGTTGCAT 57.366 40.909 0.00 0.00 33.30 3.96
6088 6442 2.159268 CCCAAATGACGCATTGCATGTA 60.159 45.455 9.69 0.00 34.04 2.29
6091 6445 0.657312 ATGACGCATTGCATGTACGG 59.343 50.000 9.69 0.00 0.00 4.02
6106 6460 1.871039 GTACGGCACTTGTCACAACAT 59.129 47.619 0.00 0.00 34.73 2.71
6110 6464 2.221169 GGCACTTGTCACAACATGAGA 58.779 47.619 0.00 0.00 38.28 3.27
6117 6471 5.750067 ACTTGTCACAACATGAGATTTTTGC 59.250 36.000 0.00 0.00 38.28 3.68
6121 6475 3.737266 CACAACATGAGATTTTTGCGCTT 59.263 39.130 9.73 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.227703 TCCTACTCCCTCCTTCCATCT 58.772 52.381 0.00 0.00 0.00 2.90
2 3 2.777459 TCCTACTCCCTCCTTCCATC 57.223 55.000 0.00 0.00 0.00 3.51
3 4 3.735442 ACTATCCTACTCCCTCCTTCCAT 59.265 47.826 0.00 0.00 0.00 3.41
4 5 3.140143 ACTATCCTACTCCCTCCTTCCA 58.860 50.000 0.00 0.00 0.00 3.53
5 6 3.907459 ACTATCCTACTCCCTCCTTCC 57.093 52.381 0.00 0.00 0.00 3.46
6 7 6.438108 GGAAATACTATCCTACTCCCTCCTTC 59.562 46.154 0.00 0.00 33.98 3.46
7 8 6.106494 AGGAAATACTATCCTACTCCCTCCTT 59.894 42.308 0.00 0.00 45.51 3.36
8 9 5.622204 AGGAAATACTATCCTACTCCCTCCT 59.378 44.000 0.00 0.00 45.51 3.69
9 10 5.906254 AGGAAATACTATCCTACTCCCTCC 58.094 45.833 0.00 0.00 45.51 4.30
26 27 8.935741 AGGAGTATATTTCTTTACGGAGGAAAT 58.064 33.333 12.92 12.92 40.97 2.17
27 28 8.315220 AGGAGTATATTTCTTTACGGAGGAAA 57.685 34.615 1.32 1.32 34.22 3.13
28 29 7.909485 AGGAGTATATTTCTTTACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
29 30 8.443176 TCTAGGAGTATATTTCTTTACGGAGGA 58.557 37.037 0.00 0.00 0.00 3.71
30 31 8.632906 TCTAGGAGTATATTTCTTTACGGAGG 57.367 38.462 0.00 0.00 0.00 4.30
47 48 9.981460 AGGAAAACAATCATTAATTCTAGGAGT 57.019 29.630 0.00 0.00 0.00 3.85
49 50 9.753674 ACAGGAAAACAATCATTAATTCTAGGA 57.246 29.630 0.00 0.00 0.00 2.94
55 56 9.829507 TGACAAACAGGAAAACAATCATTAATT 57.170 25.926 0.00 0.00 0.00 1.40
57 58 9.829507 AATGACAAACAGGAAAACAATCATTAA 57.170 25.926 0.00 0.00 33.64 1.40
58 59 9.258826 CAATGACAAACAGGAAAACAATCATTA 57.741 29.630 0.00 0.00 33.64 1.90
59 60 7.227116 CCAATGACAAACAGGAAAACAATCATT 59.773 33.333 0.00 0.00 35.26 2.57
60 61 6.707161 CCAATGACAAACAGGAAAACAATCAT 59.293 34.615 0.00 0.00 0.00 2.45
61 62 6.047870 CCAATGACAAACAGGAAAACAATCA 58.952 36.000 0.00 0.00 0.00 2.57
62 63 6.279882 TCCAATGACAAACAGGAAAACAATC 58.720 36.000 0.00 0.00 0.00 2.67
63 64 6.232581 TCCAATGACAAACAGGAAAACAAT 57.767 33.333 0.00 0.00 0.00 2.71
64 65 5.667539 TCCAATGACAAACAGGAAAACAA 57.332 34.783 0.00 0.00 0.00 2.83
65 66 5.667539 TTCCAATGACAAACAGGAAAACA 57.332 34.783 0.00 0.00 35.57 2.83
66 67 6.337356 TCTTTCCAATGACAAACAGGAAAAC 58.663 36.000 0.00 0.00 44.88 2.43
67 68 6.537453 TCTTTCCAATGACAAACAGGAAAA 57.463 33.333 0.00 0.00 44.88 2.29
68 69 6.337356 GTTCTTTCCAATGACAAACAGGAAA 58.663 36.000 0.00 0.00 43.80 3.13
69 70 5.449862 CGTTCTTTCCAATGACAAACAGGAA 60.450 40.000 0.00 0.00 36.63 3.36
70 71 4.036262 CGTTCTTTCCAATGACAAACAGGA 59.964 41.667 0.00 0.00 0.00 3.86
71 72 4.290155 CGTTCTTTCCAATGACAAACAGG 58.710 43.478 0.00 0.00 0.00 4.00
72 73 4.036262 TCCGTTCTTTCCAATGACAAACAG 59.964 41.667 0.00 0.00 0.00 3.16
73 74 3.948473 TCCGTTCTTTCCAATGACAAACA 59.052 39.130 0.00 0.00 0.00 2.83
74 75 4.561735 TCCGTTCTTTCCAATGACAAAC 57.438 40.909 0.00 0.00 0.00 2.93
75 76 5.584253 TTTCCGTTCTTTCCAATGACAAA 57.416 34.783 0.00 0.00 0.00 2.83
76 77 5.584253 TTTTCCGTTCTTTCCAATGACAA 57.416 34.783 0.00 0.00 0.00 3.18
77 78 4.499019 GCTTTTCCGTTCTTTCCAATGACA 60.499 41.667 0.00 0.00 0.00 3.58
78 79 3.981416 GCTTTTCCGTTCTTTCCAATGAC 59.019 43.478 0.00 0.00 0.00 3.06
79 80 3.634448 TGCTTTTCCGTTCTTTCCAATGA 59.366 39.130 0.00 0.00 0.00 2.57
80 81 3.976169 TGCTTTTCCGTTCTTTCCAATG 58.024 40.909 0.00 0.00 0.00 2.82
81 82 4.871933 ATGCTTTTCCGTTCTTTCCAAT 57.128 36.364 0.00 0.00 0.00 3.16
82 83 4.142049 ACAATGCTTTTCCGTTCTTTCCAA 60.142 37.500 0.00 0.00 0.00 3.53
83 84 3.383185 ACAATGCTTTTCCGTTCTTTCCA 59.617 39.130 0.00 0.00 0.00 3.53
84 85 3.977427 ACAATGCTTTTCCGTTCTTTCC 58.023 40.909 0.00 0.00 0.00 3.13
85 86 6.308041 GGAATACAATGCTTTTCCGTTCTTTC 59.692 38.462 0.00 0.00 0.00 2.62
86 87 6.015434 AGGAATACAATGCTTTTCCGTTCTTT 60.015 34.615 4.51 0.00 42.00 2.52
87 88 5.476945 AGGAATACAATGCTTTTCCGTTCTT 59.523 36.000 4.51 0.00 42.00 2.52
88 89 5.010282 AGGAATACAATGCTTTTCCGTTCT 58.990 37.500 4.51 0.00 42.00 3.01
89 90 5.310720 AGGAATACAATGCTTTTCCGTTC 57.689 39.130 4.51 0.00 42.00 3.95
90 91 4.157840 GGAGGAATACAATGCTTTTCCGTT 59.842 41.667 4.51 0.00 42.00 4.44
91 92 3.694566 GGAGGAATACAATGCTTTTCCGT 59.305 43.478 4.51 0.00 42.00 4.69
92 93 3.947834 AGGAGGAATACAATGCTTTTCCG 59.052 43.478 4.51 0.00 42.00 4.30
93 94 6.357367 TCTAGGAGGAATACAATGCTTTTCC 58.643 40.000 0.00 2.39 38.31 3.13
94 95 7.865706 TTCTAGGAGGAATACAATGCTTTTC 57.134 36.000 0.00 0.00 0.00 2.29
95 96 8.650143 TTTTCTAGGAGGAATACAATGCTTTT 57.350 30.769 0.00 0.00 0.00 2.27
96 97 8.689972 CATTTTCTAGGAGGAATACAATGCTTT 58.310 33.333 0.00 0.00 0.00 3.51
97 98 8.055181 TCATTTTCTAGGAGGAATACAATGCTT 58.945 33.333 0.00 0.00 0.00 3.91
98 99 7.500559 GTCATTTTCTAGGAGGAATACAATGCT 59.499 37.037 0.00 0.00 0.00 3.79
99 100 7.283127 TGTCATTTTCTAGGAGGAATACAATGC 59.717 37.037 0.00 0.00 0.00 3.56
100 101 8.616076 GTGTCATTTTCTAGGAGGAATACAATG 58.384 37.037 0.00 0.00 0.00 2.82
101 102 8.328758 TGTGTCATTTTCTAGGAGGAATACAAT 58.671 33.333 0.00 0.00 0.00 2.71
102 103 7.685481 TGTGTCATTTTCTAGGAGGAATACAA 58.315 34.615 0.00 0.00 0.00 2.41
103 104 7.252612 TGTGTCATTTTCTAGGAGGAATACA 57.747 36.000 0.00 0.00 0.00 2.29
104 105 7.606456 TGTTGTGTCATTTTCTAGGAGGAATAC 59.394 37.037 0.00 0.00 0.00 1.89
105 106 7.685481 TGTTGTGTCATTTTCTAGGAGGAATA 58.315 34.615 0.00 0.00 0.00 1.75
106 107 6.542821 TGTTGTGTCATTTTCTAGGAGGAAT 58.457 36.000 0.00 0.00 0.00 3.01
107 108 5.935945 TGTTGTGTCATTTTCTAGGAGGAA 58.064 37.500 0.00 0.00 0.00 3.36
108 109 5.513094 CCTGTTGTGTCATTTTCTAGGAGGA 60.513 44.000 0.00 0.00 0.00 3.71
109 110 4.697352 CCTGTTGTGTCATTTTCTAGGAGG 59.303 45.833 0.00 0.00 0.00 4.30
110 111 5.308825 ACCTGTTGTGTCATTTTCTAGGAG 58.691 41.667 0.00 0.00 0.00 3.69
111 112 5.304686 ACCTGTTGTGTCATTTTCTAGGA 57.695 39.130 0.00 0.00 0.00 2.94
112 113 7.504924 TTTACCTGTTGTGTCATTTTCTAGG 57.495 36.000 0.00 0.00 0.00 3.02
113 114 9.965824 ATTTTTACCTGTTGTGTCATTTTCTAG 57.034 29.630 0.00 0.00 0.00 2.43
119 120 9.744468 GTTCTTATTTTTACCTGTTGTGTCATT 57.256 29.630 0.00 0.00 0.00 2.57
120 121 8.073768 CGTTCTTATTTTTACCTGTTGTGTCAT 58.926 33.333 0.00 0.00 0.00 3.06
121 122 7.411274 CGTTCTTATTTTTACCTGTTGTGTCA 58.589 34.615 0.00 0.00 0.00 3.58
122 123 6.854381 CCGTTCTTATTTTTACCTGTTGTGTC 59.146 38.462 0.00 0.00 0.00 3.67
123 124 6.543100 TCCGTTCTTATTTTTACCTGTTGTGT 59.457 34.615 0.00 0.00 0.00 3.72
124 125 6.961576 TCCGTTCTTATTTTTACCTGTTGTG 58.038 36.000 0.00 0.00 0.00 3.33
125 126 6.993902 TCTCCGTTCTTATTTTTACCTGTTGT 59.006 34.615 0.00 0.00 0.00 3.32
126 127 7.429636 TCTCCGTTCTTATTTTTACCTGTTG 57.570 36.000 0.00 0.00 0.00 3.33
127 128 7.935210 TCTTCTCCGTTCTTATTTTTACCTGTT 59.065 33.333 0.00 0.00 0.00 3.16
128 129 7.447594 TCTTCTCCGTTCTTATTTTTACCTGT 58.552 34.615 0.00 0.00 0.00 4.00
129 130 7.900782 TCTTCTCCGTTCTTATTTTTACCTG 57.099 36.000 0.00 0.00 0.00 4.00
130 131 9.163899 GAATCTTCTCCGTTCTTATTTTTACCT 57.836 33.333 0.00 0.00 0.00 3.08
131 132 8.114905 CGAATCTTCTCCGTTCTTATTTTTACC 58.885 37.037 0.00 0.00 0.00 2.85
132 133 8.114905 CCGAATCTTCTCCGTTCTTATTTTTAC 58.885 37.037 0.00 0.00 0.00 2.01
133 134 7.820872 ACCGAATCTTCTCCGTTCTTATTTTTA 59.179 33.333 0.00 0.00 0.00 1.52
134 135 6.653740 ACCGAATCTTCTCCGTTCTTATTTTT 59.346 34.615 0.00 0.00 0.00 1.94
135 136 6.092259 CACCGAATCTTCTCCGTTCTTATTTT 59.908 38.462 0.00 0.00 0.00 1.82
136 137 5.581085 CACCGAATCTTCTCCGTTCTTATTT 59.419 40.000 0.00 0.00 0.00 1.40
137 138 5.105473 TCACCGAATCTTCTCCGTTCTTATT 60.105 40.000 0.00 0.00 0.00 1.40
138 139 4.401519 TCACCGAATCTTCTCCGTTCTTAT 59.598 41.667 0.00 0.00 0.00 1.73
139 140 3.760151 TCACCGAATCTTCTCCGTTCTTA 59.240 43.478 0.00 0.00 0.00 2.10
140 141 2.561419 TCACCGAATCTTCTCCGTTCTT 59.439 45.455 0.00 0.00 0.00 2.52
141 142 2.168496 TCACCGAATCTTCTCCGTTCT 58.832 47.619 0.00 0.00 0.00 3.01
142 143 2.649331 TCACCGAATCTTCTCCGTTC 57.351 50.000 0.00 0.00 0.00 3.95
143 144 3.488721 CGTATCACCGAATCTTCTCCGTT 60.489 47.826 0.00 0.00 0.00 4.44
144 145 2.033049 CGTATCACCGAATCTTCTCCGT 59.967 50.000 0.00 0.00 0.00 4.69
145 146 2.289820 TCGTATCACCGAATCTTCTCCG 59.710 50.000 0.00 0.00 33.15 4.63
146 147 3.984508 TCGTATCACCGAATCTTCTCC 57.015 47.619 0.00 0.00 33.15 3.71
147 148 3.731717 GCTTCGTATCACCGAATCTTCTC 59.268 47.826 0.00 0.00 44.93 2.87
148 149 3.381908 AGCTTCGTATCACCGAATCTTCT 59.618 43.478 0.00 0.00 44.93 2.85
149 150 3.487574 CAGCTTCGTATCACCGAATCTTC 59.512 47.826 0.00 0.00 44.93 2.87
150 151 3.448686 CAGCTTCGTATCACCGAATCTT 58.551 45.455 0.00 0.00 44.93 2.40
151 152 2.223829 CCAGCTTCGTATCACCGAATCT 60.224 50.000 0.00 0.00 44.93 2.40
152 153 2.128035 CCAGCTTCGTATCACCGAATC 58.872 52.381 0.00 0.00 44.93 2.52
153 154 1.480954 ACCAGCTTCGTATCACCGAAT 59.519 47.619 0.00 0.00 44.93 3.34
154 155 0.892755 ACCAGCTTCGTATCACCGAA 59.107 50.000 0.00 0.00 43.96 4.30
155 156 0.454600 GACCAGCTTCGTATCACCGA 59.545 55.000 0.00 0.00 34.52 4.69
156 157 0.527817 GGACCAGCTTCGTATCACCG 60.528 60.000 0.00 0.00 0.00 4.94
157 158 0.535335 TGGACCAGCTTCGTATCACC 59.465 55.000 0.00 0.00 0.00 4.02
158 159 2.604046 ATGGACCAGCTTCGTATCAC 57.396 50.000 0.00 0.00 0.00 3.06
159 160 3.627395 AAATGGACCAGCTTCGTATCA 57.373 42.857 0.00 0.00 0.00 2.15
160 161 4.873827 TGTAAAATGGACCAGCTTCGTATC 59.126 41.667 0.00 0.00 0.00 2.24
161 162 4.839121 TGTAAAATGGACCAGCTTCGTAT 58.161 39.130 0.00 0.00 0.00 3.06
162 163 4.274602 TGTAAAATGGACCAGCTTCGTA 57.725 40.909 0.00 0.00 0.00 3.43
163 164 3.134574 TGTAAAATGGACCAGCTTCGT 57.865 42.857 0.00 0.00 0.00 3.85
164 165 3.670627 GCTTGTAAAATGGACCAGCTTCG 60.671 47.826 0.00 0.00 33.82 3.79
165 166 3.670627 CGCTTGTAAAATGGACCAGCTTC 60.671 47.826 0.00 0.00 34.31 3.86
166 167 2.228822 CGCTTGTAAAATGGACCAGCTT 59.771 45.455 0.00 0.00 34.31 3.74
167 168 1.812571 CGCTTGTAAAATGGACCAGCT 59.187 47.619 0.00 0.00 34.31 4.24
168 169 1.810151 TCGCTTGTAAAATGGACCAGC 59.190 47.619 0.00 0.00 33.39 4.85
169 170 3.065371 GGATCGCTTGTAAAATGGACCAG 59.935 47.826 0.00 0.00 0.00 4.00
170 171 3.013921 GGATCGCTTGTAAAATGGACCA 58.986 45.455 0.00 0.00 0.00 4.02
171 172 3.013921 TGGATCGCTTGTAAAATGGACC 58.986 45.455 0.00 0.00 0.00 4.46
172 173 3.689649 AGTGGATCGCTTGTAAAATGGAC 59.310 43.478 0.00 0.00 0.00 4.02
173 174 3.950397 AGTGGATCGCTTGTAAAATGGA 58.050 40.909 0.00 0.00 0.00 3.41
174 175 6.377327 AATAGTGGATCGCTTGTAAAATGG 57.623 37.500 0.00 0.00 0.00 3.16
175 176 7.432252 GGAAAATAGTGGATCGCTTGTAAAATG 59.568 37.037 0.00 0.00 0.00 2.32
176 177 7.122055 TGGAAAATAGTGGATCGCTTGTAAAAT 59.878 33.333 0.00 0.00 0.00 1.82
177 178 6.431543 TGGAAAATAGTGGATCGCTTGTAAAA 59.568 34.615 0.00 0.00 0.00 1.52
178 179 5.941058 TGGAAAATAGTGGATCGCTTGTAAA 59.059 36.000 0.00 0.00 0.00 2.01
179 180 5.492895 TGGAAAATAGTGGATCGCTTGTAA 58.507 37.500 0.00 0.00 0.00 2.41
180 181 5.092554 TGGAAAATAGTGGATCGCTTGTA 57.907 39.130 0.00 0.00 0.00 2.41
181 182 3.950397 TGGAAAATAGTGGATCGCTTGT 58.050 40.909 0.00 0.00 0.00 3.16
182 183 4.023707 GGATGGAAAATAGTGGATCGCTTG 60.024 45.833 0.00 0.00 0.00 4.01
183 184 4.137543 GGATGGAAAATAGTGGATCGCTT 58.862 43.478 0.00 0.00 0.00 4.68
184 185 3.496870 GGGATGGAAAATAGTGGATCGCT 60.497 47.826 0.00 0.00 0.00 4.93
185 186 2.814336 GGGATGGAAAATAGTGGATCGC 59.186 50.000 0.00 0.00 0.00 4.58
186 187 3.067106 CGGGATGGAAAATAGTGGATCG 58.933 50.000 0.00 0.00 0.00 3.69
187 188 4.351874 TCGGGATGGAAAATAGTGGATC 57.648 45.455 0.00 0.00 0.00 3.36
188 189 4.412199 TCTTCGGGATGGAAAATAGTGGAT 59.588 41.667 0.00 0.00 0.00 3.41
189 190 3.778075 TCTTCGGGATGGAAAATAGTGGA 59.222 43.478 0.00 0.00 0.00 4.02
190 191 4.150897 TCTTCGGGATGGAAAATAGTGG 57.849 45.455 0.00 0.00 0.00 4.00
191 192 5.368145 TGATCTTCGGGATGGAAAATAGTG 58.632 41.667 0.00 0.00 34.33 2.74
192 193 5.630415 TGATCTTCGGGATGGAAAATAGT 57.370 39.130 0.00 0.00 34.33 2.12
193 194 7.118390 GTGTATGATCTTCGGGATGGAAAATAG 59.882 40.741 0.00 0.00 34.33 1.73
194 195 6.934645 GTGTATGATCTTCGGGATGGAAAATA 59.065 38.462 0.00 0.00 34.33 1.40
195 196 5.765182 GTGTATGATCTTCGGGATGGAAAAT 59.235 40.000 0.00 0.00 34.33 1.82
196 197 5.123227 GTGTATGATCTTCGGGATGGAAAA 58.877 41.667 0.00 0.00 34.33 2.29
197 198 4.444306 GGTGTATGATCTTCGGGATGGAAA 60.444 45.833 0.00 0.00 34.33 3.13
198 199 3.071023 GGTGTATGATCTTCGGGATGGAA 59.929 47.826 0.00 0.00 34.33 3.53
199 200 2.632996 GGTGTATGATCTTCGGGATGGA 59.367 50.000 0.00 0.00 34.33 3.41
200 201 2.289694 GGGTGTATGATCTTCGGGATGG 60.290 54.545 0.00 0.00 34.33 3.51
201 202 2.368548 TGGGTGTATGATCTTCGGGATG 59.631 50.000 0.00 0.00 34.33 3.51
202 203 2.634940 CTGGGTGTATGATCTTCGGGAT 59.365 50.000 0.00 0.00 37.37 3.85
203 204 2.039418 CTGGGTGTATGATCTTCGGGA 58.961 52.381 0.00 0.00 0.00 5.14
204 205 2.036475 CTCTGGGTGTATGATCTTCGGG 59.964 54.545 0.00 0.00 0.00 5.14
205 206 2.546795 GCTCTGGGTGTATGATCTTCGG 60.547 54.545 0.00 0.00 0.00 4.30
206 207 2.546795 GGCTCTGGGTGTATGATCTTCG 60.547 54.545 0.00 0.00 0.00 3.79
207 208 2.435805 TGGCTCTGGGTGTATGATCTTC 59.564 50.000 0.00 0.00 0.00 2.87
208 209 2.437281 CTGGCTCTGGGTGTATGATCTT 59.563 50.000 0.00 0.00 0.00 2.40
209 210 2.045524 CTGGCTCTGGGTGTATGATCT 58.954 52.381 0.00 0.00 0.00 2.75
210 211 2.036992 CTCTGGCTCTGGGTGTATGATC 59.963 54.545 0.00 0.00 0.00 2.92
211 212 2.045524 CTCTGGCTCTGGGTGTATGAT 58.954 52.381 0.00 0.00 0.00 2.45
212 213 1.489481 CTCTGGCTCTGGGTGTATGA 58.511 55.000 0.00 0.00 0.00 2.15
213 214 0.179062 GCTCTGGCTCTGGGTGTATG 60.179 60.000 0.00 0.00 35.22 2.39
214 215 1.680522 CGCTCTGGCTCTGGGTGTAT 61.681 60.000 0.00 0.00 36.09 2.29
215 216 2.351244 CGCTCTGGCTCTGGGTGTA 61.351 63.158 0.00 0.00 36.09 2.90
216 217 3.699894 CGCTCTGGCTCTGGGTGT 61.700 66.667 0.00 0.00 36.09 4.16
217 218 2.641439 GATCGCTCTGGCTCTGGGTG 62.641 65.000 0.00 0.00 36.09 4.61
218 219 2.364842 ATCGCTCTGGCTCTGGGT 60.365 61.111 0.00 0.00 36.09 4.51
219 220 1.756408 ATGATCGCTCTGGCTCTGGG 61.756 60.000 0.00 0.00 36.09 4.45
220 221 0.106335 AATGATCGCTCTGGCTCTGG 59.894 55.000 0.00 0.00 36.09 3.86
221 222 2.223900 TGTAATGATCGCTCTGGCTCTG 60.224 50.000 0.00 0.00 36.09 3.35
222 223 2.034878 TGTAATGATCGCTCTGGCTCT 58.965 47.619 0.00 0.00 36.09 4.09
223 224 2.035193 TCTGTAATGATCGCTCTGGCTC 59.965 50.000 0.00 0.00 36.09 4.70
224 225 2.034878 TCTGTAATGATCGCTCTGGCT 58.965 47.619 0.00 0.00 36.09 4.75
225 226 2.515926 TCTGTAATGATCGCTCTGGC 57.484 50.000 0.00 0.00 0.00 4.85
226 227 8.296000 CCTATATATCTGTAATGATCGCTCTGG 58.704 40.741 0.00 0.00 0.00 3.86
227 228 8.296000 CCCTATATATCTGTAATGATCGCTCTG 58.704 40.741 0.00 0.00 0.00 3.35
228 229 8.221251 TCCCTATATATCTGTAATGATCGCTCT 58.779 37.037 0.00 0.00 0.00 4.09
229 230 8.293867 GTCCCTATATATCTGTAATGATCGCTC 58.706 40.741 0.00 0.00 0.00 5.03
230 231 7.780271 TGTCCCTATATATCTGTAATGATCGCT 59.220 37.037 0.00 0.00 0.00 4.93
231 232 7.941919 TGTCCCTATATATCTGTAATGATCGC 58.058 38.462 0.00 0.00 0.00 4.58
232 233 9.737427 GTTGTCCCTATATATCTGTAATGATCG 57.263 37.037 0.00 0.00 0.00 3.69
240 241 9.159254 TGATTCTTGTTGTCCCTATATATCTGT 57.841 33.333 0.00 0.00 0.00 3.41
241 242 9.650539 CTGATTCTTGTTGTCCCTATATATCTG 57.349 37.037 0.00 0.00 0.00 2.90
242 243 9.386122 ACTGATTCTTGTTGTCCCTATATATCT 57.614 33.333 0.00 0.00 0.00 1.98
246 247 7.926555 CGTTACTGATTCTTGTTGTCCCTATAT 59.073 37.037 0.00 0.00 0.00 0.86
247 248 7.093640 ACGTTACTGATTCTTGTTGTCCCTATA 60.094 37.037 0.00 0.00 0.00 1.31
248 249 6.106673 CGTTACTGATTCTTGTTGTCCCTAT 58.893 40.000 0.00 0.00 0.00 2.57
249 250 5.011329 ACGTTACTGATTCTTGTTGTCCCTA 59.989 40.000 0.00 0.00 0.00 3.53
250 251 4.202326 ACGTTACTGATTCTTGTTGTCCCT 60.202 41.667 0.00 0.00 0.00 4.20
251 252 4.062991 ACGTTACTGATTCTTGTTGTCCC 58.937 43.478 0.00 0.00 0.00 4.46
252 253 5.465724 AGAACGTTACTGATTCTTGTTGTCC 59.534 40.000 0.00 0.00 28.03 4.02
253 254 6.526566 AGAACGTTACTGATTCTTGTTGTC 57.473 37.500 0.00 0.00 28.03 3.18
291 292 5.793763 AGTACTACTCCCTCTATGGCTCTAT 59.206 44.000 0.00 0.00 0.00 1.98
292 293 5.164143 AGTACTACTCCCTCTATGGCTCTA 58.836 45.833 0.00 0.00 0.00 2.43
293 294 3.984770 AGTACTACTCCCTCTATGGCTCT 59.015 47.826 0.00 0.00 0.00 4.09
294 295 4.376225 AGTACTACTCCCTCTATGGCTC 57.624 50.000 0.00 0.00 0.00 4.70
295 296 7.585884 TTATAGTACTACTCCCTCTATGGCT 57.414 40.000 4.31 0.00 0.00 4.75
296 297 9.917887 TTATTATAGTACTACTCCCTCTATGGC 57.082 37.037 4.31 0.00 0.00 4.40
333 334 8.916062 TCCACATTTGATGCAGTAATTCATATT 58.084 29.630 0.00 0.00 0.00 1.28
334 335 8.355169 GTCCACATTTGATGCAGTAATTCATAT 58.645 33.333 0.00 0.00 0.00 1.78
375 376 2.738587 TGTTTACTTTGGGGCACTGA 57.261 45.000 0.00 0.00 0.00 3.41
380 638 7.640597 AATATAGTCTTGTTTACTTTGGGGC 57.359 36.000 0.00 0.00 0.00 5.80
422 680 4.646492 CCAGTCCATAGGCTGCTAATTTTT 59.354 41.667 0.00 0.00 0.00 1.94
423 681 4.210331 CCAGTCCATAGGCTGCTAATTTT 58.790 43.478 0.00 0.00 0.00 1.82
424 682 3.825328 CCAGTCCATAGGCTGCTAATTT 58.175 45.455 0.00 0.00 0.00 1.82
425 683 3.498774 CCAGTCCATAGGCTGCTAATT 57.501 47.619 0.00 0.00 0.00 1.40
577 837 1.010125 GCGTGCTTTTGTCGCTTCA 60.010 52.632 0.00 0.00 45.29 3.02
621 881 3.157949 TCAGTGTGTCGGTGGGCA 61.158 61.111 0.00 0.00 0.00 5.36
626 886 2.445085 TGGGGTCAGTGTGTCGGT 60.445 61.111 0.00 0.00 0.00 4.69
692 952 1.102222 GGGTACAGCTCGGACTCGAT 61.102 60.000 0.00 0.00 45.04 3.59
1296 1585 2.610859 TCCACCCCTTCCCTGAGC 60.611 66.667 0.00 0.00 0.00 4.26
1300 1589 2.606826 GACGTCCACCCCTTCCCT 60.607 66.667 3.51 0.00 0.00 4.20
1480 1769 2.401583 AATTCAGGTGACGCATAGCA 57.598 45.000 0.00 0.00 0.00 3.49
1529 1818 2.256306 TGACCAGAGGTGCTTGTGATA 58.744 47.619 0.00 0.00 35.25 2.15
1554 1843 7.959733 TCTTAGTACGATGTAATTGCACAAAG 58.040 34.615 0.00 0.00 30.84 2.77
1706 1998 0.734942 CGCTGCTGGCTGAAAATTGG 60.735 55.000 0.00 0.00 39.13 3.16
1710 2002 1.303561 ATCCGCTGCTGGCTGAAAA 60.304 52.632 0.00 0.00 37.68 2.29
2101 2394 4.713553 TCAATAAGTCCACTGTGCAAAGA 58.286 39.130 11.93 0.00 0.00 2.52
2102 2395 5.396484 CATCAATAAGTCCACTGTGCAAAG 58.604 41.667 1.09 1.09 0.00 2.77
2106 2399 3.012518 AGCATCAATAAGTCCACTGTGC 58.987 45.455 1.29 0.00 0.00 4.57
2150 2443 8.859236 ATCATGGAAATCGACATAAGAATCAT 57.141 30.769 0.00 0.00 0.00 2.45
2235 2528 9.872721 TCAAATCAGCAAATGCAAATTTAGATA 57.127 25.926 8.28 0.00 45.16 1.98
2260 2553 6.715464 CGGTCATAGTTATGTCAAACCAATC 58.285 40.000 7.89 0.00 35.26 2.67
2276 2569 1.754803 TGACAGGTAAGGCGGTCATAG 59.245 52.381 0.00 0.00 35.51 2.23
2433 2733 4.826733 AGTGTGCAACTTCATGGTTATCAA 59.173 37.500 0.00 0.00 34.57 2.57
2440 2740 2.620115 ACTTCAGTGTGCAACTTCATGG 59.380 45.455 0.00 0.00 36.83 3.66
2581 2881 6.119240 TCAAGTTCAATGAACAGAGAGGAT 57.881 37.500 25.63 1.92 44.11 3.24
2639 2939 9.709387 AAGCTGGGGTGTAGTAATAATATTTTT 57.291 29.630 0.00 0.00 0.00 1.94
2673 2973 2.449031 CTTGCCTGGGTGTAGCGTGA 62.449 60.000 0.00 0.00 0.00 4.35
2687 2987 7.582319 CGAAATGTTTTGTTATGTTTTCTTGCC 59.418 33.333 0.00 0.00 0.00 4.52
2712 3012 6.908825 TCCCACAAAGTTTCAGATATTTTCG 58.091 36.000 0.00 0.00 0.00 3.46
2815 3115 7.661127 AATAGTGCACGTACATTTTGAGTAA 57.339 32.000 12.01 0.00 0.00 2.24
2816 3116 7.385478 TCAAATAGTGCACGTACATTTTGAGTA 59.615 33.333 12.01 0.00 33.09 2.59
2940 3240 8.795786 TTTCGAAAATATCTGAAACTTTGTGG 57.204 30.769 8.44 0.00 30.83 4.17
2956 3256 9.862585 GAAAACATAGCAAAACATTTCGAAAAT 57.137 25.926 15.66 3.29 0.00 1.82
2987 3287 2.047274 CACCCACGCTACACCCAG 60.047 66.667 0.00 0.00 0.00 4.45
2990 3290 3.047877 GTGCACCCACGCTACACC 61.048 66.667 5.22 0.00 31.34 4.16
3077 3390 8.451908 AAAGCTGTTTAGACTGAAACTGTATT 57.548 30.769 0.00 2.28 39.57 1.89
3118 3431 8.922931 AGCCCAAATCAAAATAAAAAGTTCAT 57.077 26.923 0.00 0.00 0.00 2.57
3144 3458 8.565416 CAGTATTGAATGACACATGATAAGCAT 58.435 33.333 0.00 0.00 37.85 3.79
3157 3471 7.463383 CGACAGAACTTAGCAGTATTGAATGAC 60.463 40.741 0.00 0.00 30.68 3.06
3201 3515 2.484264 AGTAAGCTCGTGTTTGAATGCC 59.516 45.455 0.00 0.00 0.00 4.40
3378 3692 4.151883 TGCTAGTTGGAGGATTGCTTTTT 58.848 39.130 0.00 0.00 0.00 1.94
3697 4013 1.134521 ACGAGCAGTTCCAGTCAACAA 60.135 47.619 0.00 0.00 0.00 2.83
3888 4204 8.100508 AGAAGAACAGAATACAAAAACTAGCC 57.899 34.615 0.00 0.00 0.00 3.93
3894 4210 6.072893 GGCGGTAGAAGAACAGAATACAAAAA 60.073 38.462 0.00 0.00 0.00 1.94
3895 4211 5.410439 GGCGGTAGAAGAACAGAATACAAAA 59.590 40.000 0.00 0.00 0.00 2.44
4037 4353 9.878599 GGTTTAGTGACGAAATATATTTGGATG 57.121 33.333 22.44 9.85 31.18 3.51
4139 4455 1.335810 CCTTCATCATCCCGCACAATG 59.664 52.381 0.00 0.00 0.00 2.82
4260 4576 9.573166 AGCATGCTGTCATTAAATAGGTAAATA 57.427 29.630 21.98 0.00 0.00 1.40
4332 4648 6.398918 ACTGTGGCACTAGTACTAATTTGAG 58.601 40.000 19.83 4.80 0.00 3.02
4374 4690 8.443160 CCTACGCACATGAACATATTTAATAGG 58.557 37.037 0.00 0.00 0.00 2.57
4501 4817 3.572255 TGGCGCTTCCAAATTAAGAAGTT 59.428 39.130 7.64 0.00 43.21 2.66
4580 4896 3.664537 GCGACGCCTAGCTAAAAATATGC 60.665 47.826 9.14 0.00 0.00 3.14
4598 4914 7.792383 ATATAAGATAATGTACACGTGCGAC 57.208 36.000 17.22 14.70 0.00 5.19
4780 5096 5.163581 CGAGTAAAGAGGGATAAGAACGGAA 60.164 44.000 0.00 0.00 0.00 4.30
4781 5097 4.337555 CGAGTAAAGAGGGATAAGAACGGA 59.662 45.833 0.00 0.00 0.00 4.69
4788 5104 9.011095 CATATGACTACGAGTAAAGAGGGATAA 57.989 37.037 0.00 0.00 0.00 1.75
4819 5135 4.024893 TGAACAGAAAGCAAAAGCTACTCG 60.025 41.667 0.00 0.00 0.00 4.18
4870 5189 0.324285 AAGGCAGAGCACCTTGAGAG 59.676 55.000 0.00 0.00 45.88 3.20
4887 5206 3.684788 CAGGGAAACTTGGATACGTGAAG 59.315 47.826 0.00 0.00 42.51 3.02
4938 5257 0.798776 CGACCTGCCTACAAGCAAAG 59.201 55.000 0.00 0.00 43.52 2.77
4979 5298 1.871080 ACAACTACTGTGAGCAGCAC 58.129 50.000 0.00 3.06 46.30 4.40
5074 5393 3.132111 TGCAGATATCTTGTTCAGGCGTA 59.868 43.478 1.33 0.00 0.00 4.42
5150 5469 6.586463 TGTTTTTACAGTTAGATCAGCGAGAG 59.414 38.462 0.00 0.00 0.00 3.20
5155 5474 8.507249 AGTTCATGTTTTTACAGTTAGATCAGC 58.493 33.333 0.00 0.00 0.00 4.26
5271 5590 4.625311 GGTGCATTACCAATAAAGCAACAC 59.375 41.667 7.28 0.00 46.95 3.32
5290 5609 4.981806 TTTCAACTATAAGCCATGGTGC 57.018 40.909 14.67 0.00 0.00 5.01
5305 5624 6.149504 GAAATGAGCTGAAGCAATTTCAAC 57.850 37.500 24.23 9.70 44.84 3.18
5389 5710 3.268330 CATGAGAGTGAGAACCATGGTG 58.732 50.000 20.60 0.00 33.08 4.17
5391 5712 3.623906 ACATGAGAGTGAGAACCATGG 57.376 47.619 11.19 11.19 38.98 3.66
5397 5718 5.483231 AGGAGATGAAACATGAGAGTGAGAA 59.517 40.000 0.00 0.00 0.00 2.87
5534 5855 6.677781 CTTGTAAAGGAACAACTTCTGTCA 57.322 37.500 0.00 0.00 41.27 3.58
5634 5955 6.346096 TCAGGAACTTAATACATTCTTCCCG 58.654 40.000 0.00 0.00 34.60 5.14
5667 5988 6.713450 TCGGAGGCATATCGTATAAGCATATA 59.287 38.462 0.00 0.00 0.00 0.86
5675 5996 4.157289 GGACTTTCGGAGGCATATCGTATA 59.843 45.833 0.00 0.00 33.80 1.47
5680 6001 2.910688 TGGACTTTCGGAGGCATATC 57.089 50.000 0.00 0.00 33.80 1.63
5722 6043 2.477375 GTCGCTACATTTTGGTGTTCGA 59.523 45.455 0.00 0.00 35.27 3.71
5789 6110 8.340618 TCCAAAATCTCAAGAAAGAATACCTG 57.659 34.615 0.00 0.00 0.00 4.00
5849 6170 9.273016 ACATAAAAGTATATTCCTCCGATTGTG 57.727 33.333 0.00 0.00 0.00 3.33
5854 6175 8.025270 TCCAACATAAAAGTATATTCCTCCGA 57.975 34.615 0.00 0.00 0.00 4.55
5855 6176 8.671384 TTCCAACATAAAAGTATATTCCTCCG 57.329 34.615 0.00 0.00 0.00 4.63
5941 6272 3.925913 GTGCTTTGCTCTGTTTTGTTTCA 59.074 39.130 0.00 0.00 0.00 2.69
6033 6365 5.240623 TGCAACACCCTTAACTAGTGATTTG 59.759 40.000 0.00 0.00 35.47 2.32
6052 6384 2.489938 TTGGGAGTGACCTATGCAAC 57.510 50.000 0.00 0.00 38.98 4.17
6058 6394 1.066430 GCGTCATTTGGGAGTGACCTA 60.066 52.381 0.00 0.00 41.22 3.08
6088 6442 0.662619 CATGTTGTGACAAGTGCCGT 59.337 50.000 0.00 0.00 39.66 5.68
6091 6445 4.494350 AATCTCATGTTGTGACAAGTGC 57.506 40.909 0.00 0.00 39.66 4.40
6121 6475 8.366666 CGTTTTGAAACACAAATCTACGAAAAA 58.633 29.630 10.42 0.00 45.19 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.