Multiple sequence alignment - TraesCS6B01G247400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G247400 chr6B 100.000 5959 0 0 1 5959 440560372 440554414 0.000000e+00 11005.0
1 TraesCS6B01G247400 chr6A 91.047 2837 137 42 959 3721 401890006 401887213 0.000000e+00 3723.0
2 TraesCS6B01G247400 chr6A 94.434 1078 31 16 3802 4853 401887017 401885943 0.000000e+00 1631.0
3 TraesCS6B01G247400 chr6A 91.204 216 11 7 4854 5067 401885907 401885698 2.720000e-73 287.0
4 TraesCS6B01G247400 chr6A 94.318 88 5 0 3713 3800 401887190 401887103 1.040000e-27 135.0
5 TraesCS6B01G247400 chr6A 100.000 34 0 0 4174 4207 401886583 401886550 4.990000e-06 63.9
6 TraesCS6B01G247400 chr6D 91.732 1899 79 31 1878 3721 280903185 280905060 0.000000e+00 2566.0
7 TraesCS6B01G247400 chr6D 94.049 1378 50 12 3713 5067 280905083 280906451 0.000000e+00 2061.0
8 TraesCS6B01G247400 chr6D 96.109 951 30 1 896 1846 280902248 280903191 0.000000e+00 1544.0
9 TraesCS6B01G247400 chr6D 97.674 43 1 0 724 766 280902196 280902238 2.300000e-09 75.0
10 TraesCS6B01G247400 chr5A 95.106 899 42 2 5061 5959 364684195 364683299 0.000000e+00 1415.0
11 TraesCS6B01G247400 chr5A 94.855 894 45 1 5066 5959 626088628 626087736 0.000000e+00 1395.0
12 TraesCS6B01G247400 chr5A 92.291 895 66 3 5066 5959 580520491 580519599 0.000000e+00 1267.0
13 TraesCS6B01G247400 chr5A 83.144 617 77 16 12 626 535791294 535790703 6.800000e-149 538.0
14 TraesCS6B01G247400 chr5A 100.000 28 0 0 3064 3091 237479117 237479144 1.100000e-02 52.8
15 TraesCS6B01G247400 chr5B 95.243 883 41 1 5077 5959 631461296 631460415 0.000000e+00 1397.0
16 TraesCS6B01G247400 chr7B 94.737 893 45 2 5066 5958 237913226 237914116 0.000000e+00 1387.0
17 TraesCS6B01G247400 chr7B 94.719 871 45 1 5060 5930 720162011 720161142 0.000000e+00 1352.0
18 TraesCS6B01G247400 chr7B 89.172 157 16 1 741 897 667195438 667195593 1.690000e-45 195.0
19 TraesCS6B01G247400 chr2A 94.308 896 49 2 5064 5959 133478273 133477380 0.000000e+00 1371.0
20 TraesCS6B01G247400 chr2A 83.902 410 49 14 4310 4706 594117039 594117444 5.640000e-100 375.0
21 TraesCS6B01G247400 chr2A 95.588 136 5 1 763 897 7915772 7915637 3.620000e-52 217.0
22 TraesCS6B01G247400 chr2A 96.212 132 5 0 763 894 434579957 434580088 3.620000e-52 217.0
23 TraesCS6B01G247400 chr2A 93.617 141 9 0 757 897 587740022 587739882 1.680000e-50 211.0
24 TraesCS6B01G247400 chr2A 84.974 193 29 0 3490 3682 594115392 594115584 4.710000e-46 196.0
25 TraesCS6B01G247400 chr1B 94.302 895 41 3 5066 5959 6470094 6469209 0.000000e+00 1362.0
26 TraesCS6B01G247400 chr1B 87.029 663 72 8 1 657 331130188 331129534 0.000000e+00 736.0
27 TraesCS6B01G247400 chr7A 92.265 905 67 3 5056 5959 26551781 26552683 0.000000e+00 1280.0
28 TraesCS6B01G247400 chr7A 86.747 664 75 8 1 657 2853372 2852715 0.000000e+00 726.0
29 TraesCS6B01G247400 chr7A 86.645 629 74 9 1 626 2566544 2565923 0.000000e+00 688.0
30 TraesCS6B01G247400 chr3B 88.571 665 66 5 1 657 686026682 686026020 0.000000e+00 798.0
31 TraesCS6B01G247400 chr3B 87.759 580 63 4 84 657 686046654 686046077 0.000000e+00 671.0
32 TraesCS6B01G247400 chr3B 96.241 133 5 0 765 897 8039404 8039272 1.010000e-52 219.0
33 TraesCS6B01G247400 chr3B 96.241 133 5 0 765 897 367490947 367490815 1.010000e-52 219.0
34 TraesCS6B01G247400 chr3B 96.241 133 5 0 765 897 449806850 449806718 1.010000e-52 219.0
35 TraesCS6B01G247400 chr7D 86.898 664 73 9 1 657 3733333 3732677 0.000000e+00 732.0
36 TraesCS6B01G247400 chr4B 80.611 655 106 15 12 657 25389882 25390524 2.500000e-133 486.0
37 TraesCS6B01G247400 chr4B 94.891 137 6 1 758 894 40215221 40215356 4.680000e-51 213.0
38 TraesCS6B01G247400 chr3D 78.834 652 116 12 12 652 18662768 18662128 2.570000e-113 420.0
39 TraesCS6B01G247400 chr2B 84.173 417 44 17 4309 4710 529697307 529697716 9.370000e-103 385.0
40 TraesCS6B01G247400 chr2B 96.923 130 4 0 765 894 110817813 110817942 1.010000e-52 219.0
41 TraesCS6B01G247400 chr2B 84.541 207 29 3 3490 3695 529695662 529695866 1.010000e-47 202.0
42 TraesCS6B01G247400 chr2D 83.213 417 51 16 4310 4713 448521717 448521307 1.220000e-96 364.0
43 TraesCS6B01G247400 chr2D 85.789 190 27 0 3493 3682 448523327 448523138 1.010000e-47 202.0
44 TraesCS6B01G247400 chrUn 96.241 133 5 0 765 897 311940378 311940246 1.010000e-52 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G247400 chr6B 440554414 440560372 5958 True 11005.00 11005 100.0000 1 5959 1 chr6B.!!$R1 5958
1 TraesCS6B01G247400 chr6A 401885698 401890006 4308 True 1167.98 3723 94.2006 959 5067 5 chr6A.!!$R1 4108
2 TraesCS6B01G247400 chr6D 280902196 280906451 4255 False 1561.50 2566 94.8910 724 5067 4 chr6D.!!$F1 4343
3 TraesCS6B01G247400 chr5A 364683299 364684195 896 True 1415.00 1415 95.1060 5061 5959 1 chr5A.!!$R1 898
4 TraesCS6B01G247400 chr5A 626087736 626088628 892 True 1395.00 1395 94.8550 5066 5959 1 chr5A.!!$R4 893
5 TraesCS6B01G247400 chr5A 580519599 580520491 892 True 1267.00 1267 92.2910 5066 5959 1 chr5A.!!$R3 893
6 TraesCS6B01G247400 chr5A 535790703 535791294 591 True 538.00 538 83.1440 12 626 1 chr5A.!!$R2 614
7 TraesCS6B01G247400 chr5B 631460415 631461296 881 True 1397.00 1397 95.2430 5077 5959 1 chr5B.!!$R1 882
8 TraesCS6B01G247400 chr7B 237913226 237914116 890 False 1387.00 1387 94.7370 5066 5958 1 chr7B.!!$F1 892
9 TraesCS6B01G247400 chr7B 720161142 720162011 869 True 1352.00 1352 94.7190 5060 5930 1 chr7B.!!$R1 870
10 TraesCS6B01G247400 chr2A 133477380 133478273 893 True 1371.00 1371 94.3080 5064 5959 1 chr2A.!!$R2 895
11 TraesCS6B01G247400 chr2A 594115392 594117444 2052 False 285.50 375 84.4380 3490 4706 2 chr2A.!!$F2 1216
12 TraesCS6B01G247400 chr1B 6469209 6470094 885 True 1362.00 1362 94.3020 5066 5959 1 chr1B.!!$R1 893
13 TraesCS6B01G247400 chr1B 331129534 331130188 654 True 736.00 736 87.0290 1 657 1 chr1B.!!$R2 656
14 TraesCS6B01G247400 chr7A 26551781 26552683 902 False 1280.00 1280 92.2650 5056 5959 1 chr7A.!!$F1 903
15 TraesCS6B01G247400 chr7A 2852715 2853372 657 True 726.00 726 86.7470 1 657 1 chr7A.!!$R2 656
16 TraesCS6B01G247400 chr7A 2565923 2566544 621 True 688.00 688 86.6450 1 626 1 chr7A.!!$R1 625
17 TraesCS6B01G247400 chr3B 686026020 686026682 662 True 798.00 798 88.5710 1 657 1 chr3B.!!$R4 656
18 TraesCS6B01G247400 chr3B 686046077 686046654 577 True 671.00 671 87.7590 84 657 1 chr3B.!!$R5 573
19 TraesCS6B01G247400 chr7D 3732677 3733333 656 True 732.00 732 86.8980 1 657 1 chr7D.!!$R1 656
20 TraesCS6B01G247400 chr4B 25389882 25390524 642 False 486.00 486 80.6110 12 657 1 chr4B.!!$F1 645
21 TraesCS6B01G247400 chr3D 18662128 18662768 640 True 420.00 420 78.8340 12 652 1 chr3D.!!$R1 640
22 TraesCS6B01G247400 chr2B 529695662 529697716 2054 False 293.50 385 84.3570 3490 4710 2 chr2B.!!$F2 1220
23 TraesCS6B01G247400 chr2D 448521307 448523327 2020 True 283.00 364 84.5010 3493 4713 2 chr2D.!!$R1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 788 0.030235 GAAGCCGAACCGCAACTTTT 59.970 50.000 0.00 0.0 0.00 2.27 F
863 884 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.0 0.00 4.00 F
877 898 0.238553 GCACCTCCGAAAAACTGAGC 59.761 55.000 0.00 0.0 0.00 4.26 F
1601 1622 0.253044 CCATTTTCCTCTCTCCGGCA 59.747 55.000 0.00 0.0 0.00 5.69 F
1860 1882 1.063070 TGCAACTCCCACCCCACTAA 61.063 55.000 0.00 0.0 0.00 2.24 F
2874 2964 0.597377 TCGCAACATCATCGATCCCG 60.597 55.000 0.00 0.0 37.07 5.14 F
2889 2979 1.045407 TCCCGGCGCTGATTTATAGT 58.955 50.000 20.25 0.0 0.00 2.12 F
3212 3313 1.337387 GTCACCGGTACTATCTGGAGC 59.663 57.143 6.87 0.0 37.31 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2077 1.696884 TGGTGGTTGCAGTCTGTCATA 59.303 47.619 0.93 0.0 0.00 2.15 R
2855 2945 0.597377 CGGGATCGATGATGTTGCGA 60.597 55.000 0.54 0.0 39.00 5.10 R
2867 2957 0.670546 ATAAATCAGCGCCGGGATCG 60.671 55.000 2.29 0.0 0.00 3.69 R
2870 2960 1.045407 ACTATAAATCAGCGCCGGGA 58.955 50.000 2.29 0.0 0.00 5.14 R
3855 4127 2.545952 CCACTCGCTTGACAACTAGTGT 60.546 50.000 0.00 0.0 45.74 3.55 R
4836 6334 0.520404 TGAGAGAGTTGTACGGACGC 59.480 55.000 0.00 0.0 0.00 5.19 R
4848 6346 1.974236 ACAAAGTGGAGGGTGAGAGAG 59.026 52.381 0.00 0.0 0.00 3.20 R
5162 6700 0.806884 TTGTCGGTGTGGTGTTCGTC 60.807 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.679898 GCTTGGTGACTAGGGCACT 59.320 57.895 14.96 0.00 36.53 4.40
54 55 3.578286 TGGCATGGGTGAGGCACA 61.578 61.111 0.00 0.00 35.86 4.57
197 202 1.798234 TTCTTCGGTCTCGACGGCAA 61.798 55.000 0.00 0.00 45.92 4.52
212 217 1.296056 GGCAACGGCGTATTGTGTCT 61.296 55.000 15.20 0.00 42.47 3.41
246 252 1.007734 GTGTCGTCGTGGAGCTCAA 60.008 57.895 17.19 0.00 0.00 3.02
277 283 0.320334 TCGTGGCACATCGTCATTGT 60.320 50.000 19.09 0.00 44.52 2.71
311 317 1.074951 CCCGGCTGGAAGTTCCTTT 59.925 57.895 22.41 0.00 37.46 3.11
377 386 1.798813 GACTTCGTTGGCATCGTTCTT 59.201 47.619 16.65 1.65 0.00 2.52
414 423 4.899239 CAGGATCGGCGCTCCACC 62.899 72.222 29.07 14.39 35.08 4.61
429 438 4.361971 ACCGCCCGGAGTGAGAGA 62.362 66.667 14.44 0.00 38.96 3.10
448 458 2.596851 GCAGGGGCTCTCTCCAACA 61.597 63.158 0.00 0.00 36.96 3.33
505 517 1.532604 TTTCTTCTGGAGGCTCGCGA 61.533 55.000 9.26 9.26 0.00 5.87
537 549 2.706190 ACTTGGTAGTCTGGAGTGCTTT 59.294 45.455 0.00 0.00 0.00 3.51
550 562 1.905894 AGTGCTTTTTGTTGGGGTGTT 59.094 42.857 0.00 0.00 0.00 3.32
658 679 9.577003 GCTTTATATATAAAACGAGGTGAAACG 57.423 33.333 16.69 4.37 32.46 3.60
660 681 9.598517 TTTATATATAAAACGAGGTGAAACGGT 57.401 29.630 14.26 0.00 30.74 4.83
663 684 7.903995 ATATAAAACGAGGTGAAACGGTAAA 57.096 32.000 0.00 0.00 38.12 2.01
664 685 6.806388 ATAAAACGAGGTGAAACGGTAAAT 57.194 33.333 0.00 0.00 38.12 1.40
665 686 5.503662 AAAACGAGGTGAAACGGTAAATT 57.496 34.783 0.00 0.00 38.12 1.82
666 687 4.477302 AACGAGGTGAAACGGTAAATTG 57.523 40.909 0.00 0.00 38.12 2.32
667 688 3.731089 ACGAGGTGAAACGGTAAATTGA 58.269 40.909 0.00 0.00 38.12 2.57
668 689 4.128643 ACGAGGTGAAACGGTAAATTGAA 58.871 39.130 0.00 0.00 38.12 2.69
669 690 4.575645 ACGAGGTGAAACGGTAAATTGAAA 59.424 37.500 0.00 0.00 38.12 2.69
670 691 5.239963 ACGAGGTGAAACGGTAAATTGAAAT 59.760 36.000 0.00 0.00 38.12 2.17
671 692 6.146898 CGAGGTGAAACGGTAAATTGAAATT 58.853 36.000 0.00 0.00 38.12 1.82
672 693 6.304683 CGAGGTGAAACGGTAAATTGAAATTC 59.695 38.462 0.00 0.00 38.12 2.17
673 694 6.146898 AGGTGAAACGGTAAATTGAAATTCG 58.853 36.000 0.00 0.00 38.12 3.34
674 695 5.916320 GGTGAAACGGTAAATTGAAATTCGT 59.084 36.000 0.00 0.00 38.12 3.85
675 696 6.129300 GGTGAAACGGTAAATTGAAATTCGTG 60.129 38.462 2.87 0.00 38.12 4.35
676 697 5.399892 TGAAACGGTAAATTGAAATTCGTGC 59.600 36.000 2.87 0.00 30.21 5.34
677 698 4.491234 ACGGTAAATTGAAATTCGTGCA 57.509 36.364 1.60 0.00 29.10 4.57
678 699 4.861210 ACGGTAAATTGAAATTCGTGCAA 58.139 34.783 0.00 0.00 29.10 4.08
679 700 5.465935 ACGGTAAATTGAAATTCGTGCAAT 58.534 33.333 0.00 0.00 33.96 3.56
680 701 6.613233 ACGGTAAATTGAAATTCGTGCAATA 58.387 32.000 0.00 0.00 32.39 1.90
681 702 6.745450 ACGGTAAATTGAAATTCGTGCAATAG 59.255 34.615 0.00 0.00 32.39 1.73
682 703 6.196353 CGGTAAATTGAAATTCGTGCAATAGG 59.804 38.462 0.00 0.00 32.39 2.57
683 704 6.475402 GGTAAATTGAAATTCGTGCAATAGGG 59.525 38.462 0.00 0.00 32.39 3.53
684 705 3.502191 TTGAAATTCGTGCAATAGGGC 57.498 42.857 0.00 0.00 0.00 5.19
685 706 1.400142 TGAAATTCGTGCAATAGGGCG 59.600 47.619 0.00 0.00 36.28 6.13
686 707 0.100503 AAATTCGTGCAATAGGGCGC 59.899 50.000 0.00 0.00 40.79 6.53
687 708 1.029408 AATTCGTGCAATAGGGCGCA 61.029 50.000 10.83 0.00 44.30 6.09
688 709 1.439353 ATTCGTGCAATAGGGCGCAG 61.439 55.000 10.83 0.00 44.30 5.18
689 710 2.796483 TTCGTGCAATAGGGCGCAGT 62.796 55.000 10.83 0.00 44.30 4.40
690 711 2.813179 CGTGCAATAGGGCGCAGTC 61.813 63.158 10.83 0.00 44.30 3.51
691 712 1.745115 GTGCAATAGGGCGCAGTCA 60.745 57.895 10.83 0.00 43.57 3.41
692 713 1.450134 TGCAATAGGGCGCAGTCAG 60.450 57.895 10.83 0.00 36.28 3.51
693 714 1.153369 GCAATAGGGCGCAGTCAGA 60.153 57.895 10.83 0.00 0.00 3.27
694 715 1.432270 GCAATAGGGCGCAGTCAGAC 61.432 60.000 10.83 0.00 0.00 3.51
695 716 0.108186 CAATAGGGCGCAGTCAGACA 60.108 55.000 10.83 0.00 0.00 3.41
696 717 0.176680 AATAGGGCGCAGTCAGACAG 59.823 55.000 10.83 0.00 0.00 3.51
697 718 0.972983 ATAGGGCGCAGTCAGACAGT 60.973 55.000 10.83 0.00 0.00 3.55
698 719 0.323087 TAGGGCGCAGTCAGACAGTA 60.323 55.000 10.83 0.00 0.00 2.74
699 720 1.446272 GGGCGCAGTCAGACAGTAC 60.446 63.158 10.83 0.00 0.00 2.73
700 721 1.587054 GGCGCAGTCAGACAGTACT 59.413 57.895 10.83 0.00 0.00 2.73
701 722 0.456995 GGCGCAGTCAGACAGTACTC 60.457 60.000 10.83 0.00 0.00 2.59
702 723 0.241213 GCGCAGTCAGACAGTACTCA 59.759 55.000 0.30 0.00 0.00 3.41
703 724 1.970447 CGCAGTCAGACAGTACTCAC 58.030 55.000 2.66 0.00 0.00 3.51
704 725 1.537638 CGCAGTCAGACAGTACTCACT 59.462 52.381 2.66 0.00 34.42 3.41
712 733 2.366469 CAGTACTCACTGTGGCCCT 58.634 57.895 8.11 0.00 46.03 5.19
713 734 0.036952 CAGTACTCACTGTGGCCCTG 60.037 60.000 8.11 5.76 46.03 4.45
714 735 1.194781 AGTACTCACTGTGGCCCTGG 61.195 60.000 8.11 0.00 32.25 4.45
715 736 1.157513 TACTCACTGTGGCCCTGGA 59.842 57.895 8.11 0.00 0.00 3.86
716 737 1.192146 TACTCACTGTGGCCCTGGAC 61.192 60.000 8.11 0.00 0.00 4.02
717 738 3.249189 TCACTGTGGCCCTGGACC 61.249 66.667 8.11 0.00 0.00 4.46
718 739 4.704833 CACTGTGGCCCTGGACCG 62.705 72.222 0.00 0.00 0.00 4.79
722 743 3.792736 GTGGCCCTGGACCGCATA 61.793 66.667 7.80 0.00 37.64 3.14
766 787 1.652563 GAAGCCGAACCGCAACTTT 59.347 52.632 0.00 0.00 0.00 2.66
767 788 0.030235 GAAGCCGAACCGCAACTTTT 59.970 50.000 0.00 0.00 0.00 2.27
768 789 0.458260 AAGCCGAACCGCAACTTTTT 59.542 45.000 0.00 0.00 0.00 1.94
791 812 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
792 813 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
793 814 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
794 815 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
795 816 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
796 817 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
797 818 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
798 819 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
799 820 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
800 821 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
801 822 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
802 823 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
803 824 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
804 825 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
805 826 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
806 827 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
807 828 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
811 832 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
812 833 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
813 834 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
814 835 1.982913 CGCTCATATACACGCGCATAA 59.017 47.619 5.73 0.00 39.11 1.90
815 836 2.407026 CGCTCATATACACGCGCATAAA 59.593 45.455 5.73 0.00 39.11 1.40
816 837 3.718036 CGCTCATATACACGCGCATAAAC 60.718 47.826 5.73 0.00 39.11 2.01
817 838 3.428870 GCTCATATACACGCGCATAAACT 59.571 43.478 5.73 0.00 0.00 2.66
818 839 4.433022 GCTCATATACACGCGCATAAACTC 60.433 45.833 5.73 0.00 0.00 3.01
819 840 4.612943 TCATATACACGCGCATAAACTCA 58.387 39.130 5.73 0.00 0.00 3.41
820 841 5.227152 TCATATACACGCGCATAAACTCAT 58.773 37.500 5.73 0.00 0.00 2.90
821 842 5.344933 TCATATACACGCGCATAAACTCATC 59.655 40.000 5.73 0.00 0.00 2.92
822 843 1.006832 ACACGCGCATAAACTCATCC 58.993 50.000 5.73 0.00 0.00 3.51
823 844 0.304705 CACGCGCATAAACTCATCCC 59.695 55.000 5.73 0.00 0.00 3.85
824 845 0.178068 ACGCGCATAAACTCATCCCT 59.822 50.000 5.73 0.00 0.00 4.20
825 846 1.411246 ACGCGCATAAACTCATCCCTA 59.589 47.619 5.73 0.00 0.00 3.53
826 847 2.037251 ACGCGCATAAACTCATCCCTAT 59.963 45.455 5.73 0.00 0.00 2.57
827 848 2.413112 CGCGCATAAACTCATCCCTATG 59.587 50.000 8.75 0.00 0.00 2.23
828 849 3.664107 GCGCATAAACTCATCCCTATGA 58.336 45.455 0.30 0.00 39.87 2.15
829 850 4.065088 GCGCATAAACTCATCCCTATGAA 58.935 43.478 0.30 0.00 41.57 2.57
830 851 4.083802 GCGCATAAACTCATCCCTATGAAC 60.084 45.833 0.30 0.00 41.57 3.18
831 852 4.150627 CGCATAAACTCATCCCTATGAACG 59.849 45.833 0.00 0.00 41.57 3.95
832 853 4.083802 GCATAAACTCATCCCTATGAACGC 60.084 45.833 0.00 0.00 41.57 4.84
833 854 3.627395 AAACTCATCCCTATGAACGCA 57.373 42.857 0.00 0.00 41.57 5.24
834 855 2.604046 ACTCATCCCTATGAACGCAC 57.396 50.000 0.00 0.00 41.57 5.34
835 856 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
836 857 2.435805 ACTCATCCCTATGAACGCACAT 59.564 45.455 0.94 0.94 41.57 3.21
837 858 3.641436 ACTCATCCCTATGAACGCACATA 59.359 43.478 2.94 2.94 41.57 2.29
838 859 3.990092 TCATCCCTATGAACGCACATAC 58.010 45.455 0.00 0.00 39.20 2.39
839 860 2.502213 TCCCTATGAACGCACATACG 57.498 50.000 0.00 0.00 39.50 3.06
840 861 0.859232 CCCTATGAACGCACATACGC 59.141 55.000 0.00 0.00 36.19 4.42
841 862 1.566404 CCTATGAACGCACATACGCA 58.434 50.000 0.00 0.00 36.19 5.24
842 863 1.257936 CCTATGAACGCACATACGCAC 59.742 52.381 0.00 0.00 36.19 5.34
843 864 1.923864 CTATGAACGCACATACGCACA 59.076 47.619 0.00 0.00 36.19 4.57
844 865 0.442310 ATGAACGCACATACGCACAC 59.558 50.000 0.00 0.00 36.19 3.82
845 866 1.131826 GAACGCACATACGCACACC 59.868 57.895 0.00 0.00 36.19 4.16
846 867 2.235536 GAACGCACATACGCACACCC 62.236 60.000 0.00 0.00 36.19 4.61
847 868 2.434185 CGCACATACGCACACCCT 60.434 61.111 0.00 0.00 0.00 4.34
848 869 1.153726 CGCACATACGCACACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
849 870 1.418342 CGCACATACGCACACCCTAC 61.418 60.000 0.00 0.00 0.00 3.18
850 871 1.087771 GCACATACGCACACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
851 872 0.461339 CACATACGCACACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
852 873 1.145377 CATACGCACACCCTACCCC 59.855 63.158 0.00 0.00 0.00 4.95
853 874 1.002533 ATACGCACACCCTACCCCT 59.997 57.895 0.00 0.00 0.00 4.79
854 875 0.262580 ATACGCACACCCTACCCCTA 59.737 55.000 0.00 0.00 0.00 3.53
855 876 0.262580 TACGCACACCCTACCCCTAT 59.737 55.000 0.00 0.00 0.00 2.57
856 877 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
857 878 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
858 879 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
859 880 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
860 881 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
861 882 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
862 883 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
863 884 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
864 885 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
865 886 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
866 887 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
867 888 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
868 889 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
869 890 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
870 891 1.209504 CCCTATGAGCACCTCCGAAAA 59.790 52.381 0.00 0.00 0.00 2.29
871 892 2.355716 CCCTATGAGCACCTCCGAAAAA 60.356 50.000 0.00 0.00 0.00 1.94
872 893 2.678336 CCTATGAGCACCTCCGAAAAAC 59.322 50.000 0.00 0.00 0.00 2.43
873 894 2.568623 ATGAGCACCTCCGAAAAACT 57.431 45.000 0.00 0.00 0.00 2.66
874 895 1.593196 TGAGCACCTCCGAAAAACTG 58.407 50.000 0.00 0.00 0.00 3.16
875 896 1.140052 TGAGCACCTCCGAAAAACTGA 59.860 47.619 0.00 0.00 0.00 3.41
876 897 1.801178 GAGCACCTCCGAAAAACTGAG 59.199 52.381 0.00 0.00 0.00 3.35
877 898 0.238553 GCACCTCCGAAAAACTGAGC 59.761 55.000 0.00 0.00 0.00 4.26
878 899 0.875059 CACCTCCGAAAAACTGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
879 900 0.602905 ACCTCCGAAAAACTGAGCCG 60.603 55.000 0.00 0.00 0.00 5.52
880 901 1.298859 CCTCCGAAAAACTGAGCCGG 61.299 60.000 0.00 0.00 41.36 6.13
881 902 1.912371 CTCCGAAAAACTGAGCCGGC 61.912 60.000 21.89 21.89 39.96 6.13
882 903 2.258013 CCGAAAAACTGAGCCGGCA 61.258 57.895 31.54 7.98 33.47 5.69
883 904 1.586154 CCGAAAAACTGAGCCGGCAT 61.586 55.000 31.54 14.28 33.47 4.40
884 905 1.083489 CGAAAAACTGAGCCGGCATA 58.917 50.000 31.54 16.21 0.00 3.14
885 906 1.670811 CGAAAAACTGAGCCGGCATAT 59.329 47.619 31.54 8.11 0.00 1.78
886 907 2.286418 CGAAAAACTGAGCCGGCATATC 60.286 50.000 31.54 18.63 0.00 1.63
887 908 2.418368 AAAACTGAGCCGGCATATCA 57.582 45.000 31.54 22.44 0.00 2.15
888 909 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
889 910 3.769739 AAACTGAGCCGGCATATCATA 57.230 42.857 31.54 5.14 0.00 2.15
890 911 3.988976 AACTGAGCCGGCATATCATAT 57.011 42.857 31.54 11.86 0.00 1.78
891 912 3.988976 ACTGAGCCGGCATATCATATT 57.011 42.857 31.54 3.33 0.00 1.28
892 913 3.603532 ACTGAGCCGGCATATCATATTG 58.396 45.455 31.54 13.72 0.00 1.90
893 914 3.261643 ACTGAGCCGGCATATCATATTGA 59.738 43.478 31.54 0.00 0.00 2.57
894 915 4.256110 CTGAGCCGGCATATCATATTGAA 58.744 43.478 31.54 0.00 0.00 2.69
899 920 5.124457 AGCCGGCATATCATATTGAAATCAC 59.876 40.000 31.54 0.00 0.00 3.06
944 965 2.263741 CCCTGCCTGTCACTGCAAC 61.264 63.158 0.00 0.00 36.98 4.17
946 967 1.512996 CCTGCCTGTCACTGCAACTG 61.513 60.000 0.00 0.00 36.98 3.16
948 969 1.895707 GCCTGTCACTGCAACTGCT 60.896 57.895 2.95 0.00 42.66 4.24
953 974 1.152902 TCACTGCAACTGCTGGCTT 60.153 52.632 12.44 0.00 43.15 4.35
985 1006 1.027357 TATACCCCGCTCTCGTTGTC 58.973 55.000 0.00 0.00 0.00 3.18
1045 1066 0.256464 CTCCCGTACCTGACCTCTCT 59.744 60.000 0.00 0.00 0.00 3.10
1046 1067 0.702902 TCCCGTACCTGACCTCTCTT 59.297 55.000 0.00 0.00 0.00 2.85
1047 1068 1.076677 TCCCGTACCTGACCTCTCTTT 59.923 52.381 0.00 0.00 0.00 2.52
1048 1069 1.477295 CCCGTACCTGACCTCTCTTTC 59.523 57.143 0.00 0.00 0.00 2.62
1049 1070 1.477295 CCGTACCTGACCTCTCTTTCC 59.523 57.143 0.00 0.00 0.00 3.13
1050 1071 2.168496 CGTACCTGACCTCTCTTTCCA 58.832 52.381 0.00 0.00 0.00 3.53
1051 1072 2.164624 CGTACCTGACCTCTCTTTCCAG 59.835 54.545 0.00 0.00 0.00 3.86
1157 1178 6.523893 CGCACAAGTAACTCTCTAACTAACTC 59.476 42.308 0.00 0.00 0.00 3.01
1220 1241 7.657761 TGTAATTTGTGGTTGACTTTGTTTTGT 59.342 29.630 0.00 0.00 0.00 2.83
1282 1303 3.376078 GAGACGGTGGCGGTGGTA 61.376 66.667 0.00 0.00 0.00 3.25
1601 1622 0.253044 CCATTTTCCTCTCTCCGGCA 59.747 55.000 0.00 0.00 0.00 5.69
1627 1648 7.651704 AGGGTTAATTTGATTTGAAGTTTCACG 59.348 33.333 0.00 0.00 36.83 4.35
1743 1764 1.688750 ATTAGGGTTAGGGGTTGGCA 58.311 50.000 0.00 0.00 0.00 4.92
1809 1831 2.158534 TGCCCCAAATGACAAGTACTGT 60.159 45.455 0.00 0.00 42.61 3.55
1849 1871 7.029563 CCACTATAGACAAAATTTGCAACTCC 58.970 38.462 6.78 0.00 0.00 3.85
1860 1882 1.063070 TGCAACTCCCACCCCACTAA 61.063 55.000 0.00 0.00 0.00 2.24
1987 2015 3.319972 TGCCGGTGAAGTATATCTGGTAC 59.680 47.826 1.90 0.00 0.00 3.34
1988 2016 3.319972 GCCGGTGAAGTATATCTGGTACA 59.680 47.826 1.90 0.00 0.00 2.90
2003 2031 3.848303 TGGTACAGTAGTTGGGTACAGT 58.152 45.455 0.00 0.00 39.24 3.55
2046 2077 1.152546 GTTGGCCCACAGAAACCCT 60.153 57.895 0.00 0.00 0.00 4.34
2361 2398 4.396166 AGGTCACCAAATCGATCACAATTC 59.604 41.667 0.00 0.00 0.00 2.17
2364 2401 6.024049 GTCACCAAATCGATCACAATTCTTC 58.976 40.000 0.00 0.00 0.00 2.87
2472 2513 2.640831 CTTGTGTCGATCGAGATACCG 58.359 52.381 20.09 5.62 32.27 4.02
2658 2722 3.750130 GCATGCAGTTCGATCCAGATATT 59.250 43.478 14.21 0.00 0.00 1.28
2659 2723 4.931601 GCATGCAGTTCGATCCAGATATTA 59.068 41.667 14.21 0.00 0.00 0.98
2660 2724 5.163913 GCATGCAGTTCGATCCAGATATTAC 60.164 44.000 14.21 0.00 0.00 1.89
2745 2812 1.956477 ACAAGCTTGTGTTCCATGACC 59.044 47.619 30.66 0.00 40.49 4.02
2784 2851 4.222588 ACAAGAGCTAGCTGTTCTTCAGAT 59.777 41.667 24.99 0.00 42.96 2.90
2788 2855 3.768757 AGCTAGCTGTTCTTCAGATGAGT 59.231 43.478 18.57 0.00 46.27 3.41
2846 2936 2.499693 TCGCTACAATCCAGGTCATCAA 59.500 45.455 0.00 0.00 0.00 2.57
2848 2938 3.063997 CGCTACAATCCAGGTCATCAAAC 59.936 47.826 0.00 0.00 0.00 2.93
2858 2948 5.700832 TCCAGGTCATCAAACATTATATCGC 59.299 40.000 0.00 0.00 0.00 4.58
2859 2949 5.469760 CCAGGTCATCAAACATTATATCGCA 59.530 40.000 0.00 0.00 0.00 5.10
2861 2951 6.852853 CAGGTCATCAAACATTATATCGCAAC 59.147 38.462 0.00 0.00 0.00 4.17
2862 2952 6.542005 AGGTCATCAAACATTATATCGCAACA 59.458 34.615 0.00 0.00 0.00 3.33
2863 2953 7.229306 AGGTCATCAAACATTATATCGCAACAT 59.771 33.333 0.00 0.00 0.00 2.71
2864 2954 7.535258 GGTCATCAAACATTATATCGCAACATC 59.465 37.037 0.00 0.00 0.00 3.06
2865 2955 8.069574 GTCATCAAACATTATATCGCAACATCA 58.930 33.333 0.00 0.00 0.00 3.07
2866 2956 8.785946 TCATCAAACATTATATCGCAACATCAT 58.214 29.630 0.00 0.00 0.00 2.45
2867 2957 9.058424 CATCAAACATTATATCGCAACATCATC 57.942 33.333 0.00 0.00 0.00 2.92
2868 2958 7.290118 TCAAACATTATATCGCAACATCATCG 58.710 34.615 0.00 0.00 0.00 3.84
2869 2959 7.170658 TCAAACATTATATCGCAACATCATCGA 59.829 33.333 0.00 0.00 36.63 3.59
2870 2960 7.601073 AACATTATATCGCAACATCATCGAT 57.399 32.000 0.00 0.00 44.05 3.59
2871 2961 7.226757 ACATTATATCGCAACATCATCGATC 57.773 36.000 0.00 0.00 42.18 3.69
2872 2962 6.256539 ACATTATATCGCAACATCATCGATCC 59.743 38.462 0.00 0.00 42.18 3.36
2873 2963 1.800805 ATCGCAACATCATCGATCCC 58.199 50.000 0.00 0.00 38.40 3.85
2874 2964 0.597377 TCGCAACATCATCGATCCCG 60.597 55.000 0.00 0.00 37.07 5.14
2876 2966 1.845809 GCAACATCATCGATCCCGGC 61.846 60.000 0.00 0.00 36.24 6.13
2879 2969 3.306311 ATCATCGATCCCGGCGCT 61.306 61.111 7.64 0.00 36.24 5.92
2880 2970 3.580100 ATCATCGATCCCGGCGCTG 62.580 63.158 9.96 9.96 36.24 5.18
2881 2971 4.284860 CATCGATCCCGGCGCTGA 62.285 66.667 20.25 7.60 36.24 4.26
2882 2972 3.306311 ATCGATCCCGGCGCTGAT 61.306 61.111 20.25 12.56 36.24 2.90
2883 2973 2.872388 ATCGATCCCGGCGCTGATT 61.872 57.895 20.25 0.79 36.24 2.57
2885 2975 1.300620 CGATCCCGGCGCTGATTTA 60.301 57.895 20.25 0.00 0.00 1.40
2887 2977 1.403647 CGATCCCGGCGCTGATTTATA 60.404 52.381 20.25 0.00 0.00 0.98
2888 2978 2.271800 GATCCCGGCGCTGATTTATAG 58.728 52.381 20.25 0.00 0.00 1.31
2889 2979 1.045407 TCCCGGCGCTGATTTATAGT 58.955 50.000 20.25 0.00 0.00 2.12
2890 2980 2.241160 TCCCGGCGCTGATTTATAGTA 58.759 47.619 20.25 0.00 0.00 1.82
2891 2981 2.829720 TCCCGGCGCTGATTTATAGTAT 59.170 45.455 20.25 0.00 0.00 2.12
2917 3007 7.435192 TCATATATCTGTGCTAACGTCACAAAG 59.565 37.037 9.51 3.65 43.02 2.77
2920 3010 4.878439 TCTGTGCTAACGTCACAAAGTAT 58.122 39.130 9.51 0.00 43.02 2.12
2923 3013 5.051153 TGTGCTAACGTCACAAAGTATCAA 58.949 37.500 6.13 0.00 41.01 2.57
3022 3118 9.739276 TTCTATAGTGAATTGTTGTTCCTGAAT 57.261 29.630 0.00 0.00 0.00 2.57
3029 3125 9.346725 GTGAATTGTTGTTCCTGAATATTTCTC 57.653 33.333 0.00 0.00 0.00 2.87
3057 3158 6.715347 AGAATGTTCCTGTAAGCTTTTTGT 57.285 33.333 3.20 0.00 0.00 2.83
3060 3161 5.906113 TGTTCCTGTAAGCTTTTTGTTCA 57.094 34.783 3.20 0.00 0.00 3.18
3091 3192 9.927081 AGTGAAAGAAACCATAATCATAATCCT 57.073 29.630 0.00 0.00 0.00 3.24
3092 3193 9.956720 GTGAAAGAAACCATAATCATAATCCTG 57.043 33.333 0.00 0.00 0.00 3.86
3093 3194 9.699410 TGAAAGAAACCATAATCATAATCCTGT 57.301 29.630 0.00 0.00 0.00 4.00
3198 3299 1.807165 CCGTCATCAGCTGTCACCG 60.807 63.158 14.67 11.93 0.00 4.94
3211 3312 2.619177 CTGTCACCGGTACTATCTGGAG 59.381 54.545 6.87 0.00 37.31 3.86
3212 3313 1.337387 GTCACCGGTACTATCTGGAGC 59.663 57.143 6.87 0.00 37.31 4.70
3237 3338 6.036470 GCTTAGTTAAATTAGGGCAAAGCTG 58.964 40.000 0.00 0.00 35.21 4.24
3273 3374 4.202050 CCAGTAGCCCAAATAGCACAATTC 60.202 45.833 0.00 0.00 0.00 2.17
3430 3532 2.003937 TTTCTTGGTAGCCAAACCCC 57.996 50.000 2.07 0.00 43.44 4.95
3445 3551 3.653835 AACCCCAGGAATCTTCTTAGC 57.346 47.619 0.00 0.00 0.00 3.09
3686 3839 2.289002 GGCCTTCTCAATGTAAGCGATG 59.711 50.000 0.00 0.00 0.00 3.84
3705 3858 6.477033 AGCGATGATGCTGTTAAGTAAACTAG 59.523 38.462 0.00 0.00 45.28 2.57
3800 3984 4.539870 TCAGACGGTTCAGTTTACGTTAG 58.460 43.478 0.00 0.00 39.95 2.34
3855 4127 4.267536 CAAATCTTCTTCTCCCATGCTCA 58.732 43.478 0.00 0.00 0.00 4.26
3919 4191 1.426621 CGCACATGCCAGTGATGAC 59.573 57.895 9.54 0.00 42.05 3.06
3954 4226 3.005367 ACCTTGTTTATTTTGCGGGTCAG 59.995 43.478 0.00 0.00 0.00 3.51
4289 4922 6.037500 GGCAGGCCAAATTTCAGAAATAAATC 59.962 38.462 5.01 0.28 35.81 2.17
4799 6297 1.864082 CGTTTGTCCCAAAATGCAACC 59.136 47.619 0.00 0.00 0.00 3.77
4848 6346 1.842546 GAACTATCGCGTCCGTACAAC 59.157 52.381 5.77 0.00 35.54 3.32
4887 6420 6.870965 ACTTTGTAGAACAGAGCATGTAGAAG 59.129 38.462 0.00 0.00 43.00 2.85
4888 6421 6.590234 TTGTAGAACAGAGCATGTAGAAGA 57.410 37.500 0.00 0.00 43.00 2.87
4891 6424 6.868864 TGTAGAACAGAGCATGTAGAAGAAAC 59.131 38.462 0.00 0.00 43.00 2.78
4895 6428 6.942532 ACAGAGCATGTAGAAGAAACAAAA 57.057 33.333 0.00 0.00 41.60 2.44
4896 6429 7.333528 ACAGAGCATGTAGAAGAAACAAAAA 57.666 32.000 0.00 0.00 41.60 1.94
5039 6576 4.084013 CCATGTTCGTACACTCAAAAGGTC 60.084 45.833 0.00 0.00 37.03 3.85
5100 6637 0.682209 ACGTCCAGGCGTACCATAGT 60.682 55.000 7.09 0.00 43.83 2.12
5162 6700 1.654105 GATGCGAACAACGAGTGTAGG 59.346 52.381 0.00 0.00 45.77 3.18
5207 6745 1.944024 CAAACAAACACCACCGCTAGA 59.056 47.619 0.00 0.00 0.00 2.43
5248 6786 6.808321 AGCCTATCCTAAACTGATACACAA 57.192 37.500 0.00 0.00 0.00 3.33
5252 6790 7.556844 CCTATCCTAAACTGATACACAACACT 58.443 38.462 0.00 0.00 0.00 3.55
5261 6800 0.318360 TACACAACACTGCGTCTCGG 60.318 55.000 0.00 0.00 0.00 4.63
5301 6840 0.687354 AGACCACACTTCCGCAGAAT 59.313 50.000 0.00 0.00 0.00 2.40
5306 6845 2.554032 CCACACTTCCGCAGAATTTCTT 59.446 45.455 0.00 0.00 0.00 2.52
5398 6937 2.354704 CGGAAAGACACTGCCTTGGATA 60.355 50.000 0.00 0.00 0.00 2.59
5480 7019 0.034896 GGAGAGCAACGAGGAACCAA 59.965 55.000 0.00 0.00 0.00 3.67
5566 7105 2.034685 TCCGAACATCGAATCTAGGCTG 59.965 50.000 0.00 0.00 43.74 4.85
5572 7111 2.145397 TCGAATCTAGGCTGTCACCT 57.855 50.000 0.00 0.00 44.31 4.00
5573 7112 3.292492 TCGAATCTAGGCTGTCACCTA 57.708 47.619 0.00 0.00 41.50 3.08
5745 7284 2.705658 CTCCATGGGATTGGTAGCACTA 59.294 50.000 13.02 0.00 38.01 2.74
5861 7401 0.982852 CACCATCCACTCCCAGCCTA 60.983 60.000 0.00 0.00 0.00 3.93
5866 7406 2.283529 CCACTCCCAGCCTACACGT 61.284 63.158 0.00 0.00 0.00 4.49
5892 7432 3.177884 AGCCAACCAGCACCTCCA 61.178 61.111 0.00 0.00 34.23 3.86
5897 7437 2.766925 AACCAGCACCTCCAGCCAA 61.767 57.895 0.00 0.00 0.00 4.52
5936 7476 2.879233 GCCGTCACCCACTCCAAGA 61.879 63.158 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.845664 TGCCCTAGTCACCAAGCCA 60.846 57.895 0.00 0.00 0.00 4.75
30 31 0.392863 CTCACCCATGCCACATCGAA 60.393 55.000 0.00 0.00 0.00 3.71
54 55 2.359230 GCGCTGAGCTTTCACCCT 60.359 61.111 1.78 0.00 44.04 4.34
197 202 0.315886 TGACAGACACAATACGCCGT 59.684 50.000 0.00 0.00 0.00 5.68
246 252 0.387929 TGCCACGAACGAAGAGAACT 59.612 50.000 0.14 0.00 0.00 3.01
277 283 2.272146 GGATCCGAGCTTGCCCAA 59.728 61.111 0.00 0.00 0.00 4.12
311 317 1.918293 CCACCCTACACCAGAGGCA 60.918 63.158 0.00 0.00 32.18 4.75
377 386 1.451504 CAGCAGACACCAAGGACCA 59.548 57.895 0.00 0.00 0.00 4.02
414 423 4.200283 GCTCTCTCACTCCGGGCG 62.200 72.222 0.00 0.00 0.00 6.13
446 456 0.964860 TGCACACACCAAGCTGTTGT 60.965 50.000 0.00 0.00 30.95 3.32
448 458 1.113788 AATGCACACACCAAGCTGTT 58.886 45.000 0.00 0.00 0.00 3.16
505 517 2.694109 GACTACCAAGTAGGCGAGGAAT 59.306 50.000 6.71 0.00 43.14 3.01
513 525 2.166664 GCACTCCAGACTACCAAGTAGG 59.833 54.545 6.71 0.00 40.13 3.18
519 531 3.118038 ACAAAAAGCACTCCAGACTACCA 60.118 43.478 0.00 0.00 0.00 3.25
537 549 2.445682 AGTAGCAACACCCCAACAAA 57.554 45.000 0.00 0.00 0.00 2.83
577 590 7.669722 ACCCTCTTACAAAGCAGATCATTAAAA 59.330 33.333 0.00 0.00 0.00 1.52
581 597 5.184892 ACCCTCTTACAAAGCAGATCATT 57.815 39.130 0.00 0.00 0.00 2.57
612 628 3.065233 AGCAATACGACCGATACAACGTA 59.935 43.478 0.00 0.00 43.37 3.57
615 631 4.852609 AAAGCAATACGACCGATACAAC 57.147 40.909 0.00 0.00 0.00 3.32
646 667 3.731089 TCAATTTACCGTTTCACCTCGT 58.269 40.909 0.00 0.00 0.00 4.18
657 678 6.196353 CCTATTGCACGAATTTCAATTTACCG 59.804 38.462 0.00 0.00 33.13 4.02
658 679 6.475402 CCCTATTGCACGAATTTCAATTTACC 59.525 38.462 0.00 0.00 33.13 2.85
659 680 6.019881 GCCCTATTGCACGAATTTCAATTTAC 60.020 38.462 0.00 0.00 33.13 2.01
660 681 6.039616 GCCCTATTGCACGAATTTCAATTTA 58.960 36.000 0.00 0.00 33.13 1.40
661 682 4.869861 GCCCTATTGCACGAATTTCAATTT 59.130 37.500 0.00 0.00 33.13 1.82
662 683 4.432712 GCCCTATTGCACGAATTTCAATT 58.567 39.130 0.00 0.00 33.13 2.32
663 684 3.489059 CGCCCTATTGCACGAATTTCAAT 60.489 43.478 0.00 0.00 35.02 2.57
664 685 2.159448 CGCCCTATTGCACGAATTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
665 686 1.400142 CGCCCTATTGCACGAATTTCA 59.600 47.619 0.00 0.00 0.00 2.69
666 687 1.859998 GCGCCCTATTGCACGAATTTC 60.860 52.381 0.00 0.00 0.00 2.17
667 688 0.100503 GCGCCCTATTGCACGAATTT 59.899 50.000 0.00 0.00 0.00 1.82
668 689 1.029408 TGCGCCCTATTGCACGAATT 61.029 50.000 4.18 0.00 35.90 2.17
669 690 1.439353 CTGCGCCCTATTGCACGAAT 61.439 55.000 4.18 0.00 35.90 3.34
670 691 2.046796 TGCGCCCTATTGCACGAA 60.047 55.556 4.18 0.00 35.90 3.85
671 692 2.511373 CTGCGCCCTATTGCACGA 60.511 61.111 4.18 0.00 35.90 4.35
672 693 2.813179 GACTGCGCCCTATTGCACG 61.813 63.158 4.18 0.00 35.90 5.34
673 694 1.709147 CTGACTGCGCCCTATTGCAC 61.709 60.000 4.18 0.00 35.90 4.57
674 695 1.450134 CTGACTGCGCCCTATTGCA 60.450 57.895 4.18 0.00 39.13 4.08
675 696 1.153369 TCTGACTGCGCCCTATTGC 60.153 57.895 4.18 0.00 0.00 3.56
676 697 0.108186 TGTCTGACTGCGCCCTATTG 60.108 55.000 4.18 0.00 0.00 1.90
677 698 0.176680 CTGTCTGACTGCGCCCTATT 59.823 55.000 4.18 0.00 0.00 1.73
678 699 0.972983 ACTGTCTGACTGCGCCCTAT 60.973 55.000 4.18 0.00 0.00 2.57
679 700 0.323087 TACTGTCTGACTGCGCCCTA 60.323 55.000 4.18 0.00 0.00 3.53
680 701 1.606601 TACTGTCTGACTGCGCCCT 60.607 57.895 4.18 0.00 0.00 5.19
681 702 1.446272 GTACTGTCTGACTGCGCCC 60.446 63.158 4.18 0.00 0.00 6.13
682 703 0.456995 GAGTACTGTCTGACTGCGCC 60.457 60.000 4.18 3.37 0.00 6.53
683 704 0.241213 TGAGTACTGTCTGACTGCGC 59.759 55.000 13.73 0.00 0.00 6.09
684 705 1.537638 AGTGAGTACTGTCTGACTGCG 59.462 52.381 13.73 3.23 35.34 5.18
695 716 1.194781 CCAGGGCCACAGTGAGTACT 61.195 60.000 6.18 0.00 37.75 2.73
696 717 1.192146 TCCAGGGCCACAGTGAGTAC 61.192 60.000 6.18 0.00 0.00 2.73
697 718 1.157513 TCCAGGGCCACAGTGAGTA 59.842 57.895 6.18 0.00 0.00 2.59
698 719 2.122413 TCCAGGGCCACAGTGAGT 60.122 61.111 6.18 0.00 0.00 3.41
699 720 2.348998 GTCCAGGGCCACAGTGAG 59.651 66.667 6.18 0.00 0.00 3.51
700 721 3.249189 GGTCCAGGGCCACAGTGA 61.249 66.667 4.69 0.00 0.00 3.41
701 722 4.704833 CGGTCCAGGGCCACAGTG 62.705 72.222 11.80 0.00 0.00 3.66
705 726 3.792736 TATGCGGTCCAGGGCCAC 61.793 66.667 11.80 0.00 0.00 5.01
706 727 3.792736 GTATGCGGTCCAGGGCCA 61.793 66.667 11.80 0.00 0.00 5.36
707 728 3.462199 GAGTATGCGGTCCAGGGCC 62.462 68.421 0.00 0.00 0.00 5.80
708 729 2.109181 GAGTATGCGGTCCAGGGC 59.891 66.667 0.00 0.00 0.00 5.19
709 730 2.417516 CGAGTATGCGGTCCAGGG 59.582 66.667 0.00 0.00 0.00 4.45
710 731 2.417516 CCGAGTATGCGGTCCAGG 59.582 66.667 0.00 0.00 46.07 4.45
768 789 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
769 790 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
770 791 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
771 792 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
773 794 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
774 795 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
775 796 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
776 797 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
777 798 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
778 799 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
779 800 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
780 801 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
781 802 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
782 803 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
783 804 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
784 805 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
785 806 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
786 807 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
787 808 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
788 809 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
789 810 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
790 811 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
791 812 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
792 813 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
795 816 3.428870 AGTTTATGCGCGTGTATATGAGC 59.571 43.478 13.61 0.41 38.85 4.26
796 817 4.679654 TGAGTTTATGCGCGTGTATATGAG 59.320 41.667 13.61 0.00 0.00 2.90
797 818 4.612943 TGAGTTTATGCGCGTGTATATGA 58.387 39.130 13.61 0.00 0.00 2.15
798 819 4.965042 TGAGTTTATGCGCGTGTATATG 57.035 40.909 13.61 0.00 0.00 1.78
799 820 4.625742 GGATGAGTTTATGCGCGTGTATAT 59.374 41.667 13.61 0.00 0.00 0.86
800 821 3.985279 GGATGAGTTTATGCGCGTGTATA 59.015 43.478 13.61 2.40 0.00 1.47
801 822 2.800544 GGATGAGTTTATGCGCGTGTAT 59.199 45.455 13.61 4.63 0.00 2.29
802 823 2.198406 GGATGAGTTTATGCGCGTGTA 58.802 47.619 13.61 0.00 0.00 2.90
803 824 1.006832 GGATGAGTTTATGCGCGTGT 58.993 50.000 13.61 0.00 0.00 4.49
804 825 0.304705 GGGATGAGTTTATGCGCGTG 59.695 55.000 13.61 0.00 0.00 5.34
805 826 0.178068 AGGGATGAGTTTATGCGCGT 59.822 50.000 8.43 7.55 0.00 6.01
806 827 2.148916 TAGGGATGAGTTTATGCGCG 57.851 50.000 0.00 0.00 0.00 6.86
807 828 3.664107 TCATAGGGATGAGTTTATGCGC 58.336 45.455 0.00 0.00 37.15 6.09
808 829 4.150627 CGTTCATAGGGATGAGTTTATGCG 59.849 45.833 0.00 0.00 43.03 4.73
809 830 4.083802 GCGTTCATAGGGATGAGTTTATGC 60.084 45.833 0.00 0.00 43.03 3.14
810 831 5.050091 GTGCGTTCATAGGGATGAGTTTATG 60.050 44.000 0.00 0.00 43.03 1.90
811 832 5.057149 GTGCGTTCATAGGGATGAGTTTAT 58.943 41.667 0.00 0.00 43.03 1.40
812 833 4.081365 TGTGCGTTCATAGGGATGAGTTTA 60.081 41.667 0.00 0.00 43.03 2.01
813 834 3.270877 GTGCGTTCATAGGGATGAGTTT 58.729 45.455 0.00 0.00 43.03 2.66
814 835 2.236146 TGTGCGTTCATAGGGATGAGTT 59.764 45.455 0.00 0.00 43.03 3.01
815 836 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
816 837 2.602257 TGTGCGTTCATAGGGATGAG 57.398 50.000 0.00 0.00 43.03 2.90
817 838 3.552068 CGTATGTGCGTTCATAGGGATGA 60.552 47.826 11.13 0.00 40.45 2.92
818 839 2.731451 CGTATGTGCGTTCATAGGGATG 59.269 50.000 11.13 0.00 34.54 3.51
819 840 2.866460 GCGTATGTGCGTTCATAGGGAT 60.866 50.000 16.69 0.00 36.95 3.85
820 841 1.537348 GCGTATGTGCGTTCATAGGGA 60.537 52.381 16.69 0.00 36.95 4.20
821 842 0.859232 GCGTATGTGCGTTCATAGGG 59.141 55.000 16.69 8.49 36.95 3.53
822 843 1.257936 GTGCGTATGTGCGTTCATAGG 59.742 52.381 13.25 13.25 38.44 2.57
823 844 1.923864 TGTGCGTATGTGCGTTCATAG 59.076 47.619 2.83 0.73 37.81 2.23
824 845 1.656594 GTGTGCGTATGTGCGTTCATA 59.343 47.619 0.00 0.00 37.81 2.15
825 846 0.442310 GTGTGCGTATGTGCGTTCAT 59.558 50.000 0.00 0.87 37.81 2.57
826 847 1.561717 GGTGTGCGTATGTGCGTTCA 61.562 55.000 0.00 0.00 37.81 3.18
827 848 1.131826 GGTGTGCGTATGTGCGTTC 59.868 57.895 0.00 0.00 37.81 3.95
828 849 2.322081 GGGTGTGCGTATGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
829 850 1.879737 TAGGGTGTGCGTATGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
830 851 1.153726 TAGGGTGTGCGTATGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
831 852 1.087771 GGTAGGGTGTGCGTATGTGC 61.088 60.000 0.00 0.00 0.00 4.57
832 853 0.461339 GGGTAGGGTGTGCGTATGTG 60.461 60.000 0.00 0.00 0.00 3.21
833 854 1.619807 GGGGTAGGGTGTGCGTATGT 61.620 60.000 0.00 0.00 0.00 2.29
834 855 1.145377 GGGGTAGGGTGTGCGTATG 59.855 63.158 0.00 0.00 0.00 2.39
835 856 0.262580 TAGGGGTAGGGTGTGCGTAT 59.737 55.000 0.00 0.00 0.00 3.06
836 857 0.262580 ATAGGGGTAGGGTGTGCGTA 59.737 55.000 0.00 0.00 0.00 4.42
837 858 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
838 859 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
839 860 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
840 861 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
841 862 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
842 863 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
843 864 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
844 865 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
845 866 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
846 867 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
847 868 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
848 869 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
849 870 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
850 871 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
851 872 2.678336 GTTTTTCGGAGGTGCTCATAGG 59.322 50.000 0.00 0.00 31.08 2.57
852 873 3.372206 CAGTTTTTCGGAGGTGCTCATAG 59.628 47.826 0.00 0.00 31.08 2.23
853 874 3.007506 TCAGTTTTTCGGAGGTGCTCATA 59.992 43.478 0.00 0.00 31.08 2.15
854 875 2.154462 CAGTTTTTCGGAGGTGCTCAT 58.846 47.619 0.00 0.00 31.08 2.90
855 876 1.140052 TCAGTTTTTCGGAGGTGCTCA 59.860 47.619 0.00 0.00 31.08 4.26
856 877 1.801178 CTCAGTTTTTCGGAGGTGCTC 59.199 52.381 0.00 0.00 35.32 4.26
857 878 1.884235 CTCAGTTTTTCGGAGGTGCT 58.116 50.000 0.00 0.00 35.32 4.40
858 879 0.238553 GCTCAGTTTTTCGGAGGTGC 59.761 55.000 0.00 0.00 38.48 5.01
859 880 0.875059 GGCTCAGTTTTTCGGAGGTG 59.125 55.000 0.00 0.00 38.48 4.00
860 881 0.602905 CGGCTCAGTTTTTCGGAGGT 60.603 55.000 0.00 0.00 38.48 3.85
861 882 1.298859 CCGGCTCAGTTTTTCGGAGG 61.299 60.000 0.00 0.00 42.94 4.30
862 883 1.912371 GCCGGCTCAGTTTTTCGGAG 61.912 60.000 22.15 0.00 42.94 4.63
863 884 1.964373 GCCGGCTCAGTTTTTCGGA 60.964 57.895 22.15 0.00 42.94 4.55
864 885 1.586154 ATGCCGGCTCAGTTTTTCGG 61.586 55.000 29.70 0.00 43.13 4.30
865 886 1.083489 TATGCCGGCTCAGTTTTTCG 58.917 50.000 29.70 0.00 0.00 3.46
866 887 2.682856 TGATATGCCGGCTCAGTTTTTC 59.317 45.455 29.70 12.91 0.00 2.29
867 888 2.722094 TGATATGCCGGCTCAGTTTTT 58.278 42.857 29.70 3.35 0.00 1.94
868 889 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
869 890 2.645838 ATGATATGCCGGCTCAGTTT 57.354 45.000 29.70 5.43 0.00 2.66
870 891 3.988976 ATATGATATGCCGGCTCAGTT 57.011 42.857 29.70 11.48 0.00 3.16
871 892 3.261643 TCAATATGATATGCCGGCTCAGT 59.738 43.478 29.70 12.87 0.00 3.41
872 893 3.865446 TCAATATGATATGCCGGCTCAG 58.135 45.455 29.70 11.05 0.00 3.35
873 894 3.979101 TCAATATGATATGCCGGCTCA 57.021 42.857 29.70 23.34 0.00 4.26
874 895 5.355071 TGATTTCAATATGATATGCCGGCTC 59.645 40.000 29.70 17.89 0.00 4.70
875 896 5.124457 GTGATTTCAATATGATATGCCGGCT 59.876 40.000 29.70 15.76 0.00 5.52
876 897 5.106197 TGTGATTTCAATATGATATGCCGGC 60.106 40.000 22.73 22.73 0.00 6.13
877 898 6.317088 GTGTGATTTCAATATGATATGCCGG 58.683 40.000 0.00 0.00 0.00 6.13
878 899 6.017325 CGTGTGATTTCAATATGATATGCCG 58.983 40.000 0.00 0.00 0.00 5.69
879 900 5.796935 GCGTGTGATTTCAATATGATATGCC 59.203 40.000 0.00 0.00 0.00 4.40
880 901 6.303970 GTGCGTGTGATTTCAATATGATATGC 59.696 38.462 0.00 0.00 0.00 3.14
881 902 6.798476 GGTGCGTGTGATTTCAATATGATATG 59.202 38.462 0.00 0.00 0.00 1.78
882 903 6.072508 GGGTGCGTGTGATTTCAATATGATAT 60.073 38.462 0.00 0.00 0.00 1.63
883 904 5.238432 GGGTGCGTGTGATTTCAATATGATA 59.762 40.000 0.00 0.00 0.00 2.15
884 905 4.036734 GGGTGCGTGTGATTTCAATATGAT 59.963 41.667 0.00 0.00 0.00 2.45
885 906 3.376859 GGGTGCGTGTGATTTCAATATGA 59.623 43.478 0.00 0.00 0.00 2.15
886 907 3.128415 TGGGTGCGTGTGATTTCAATATG 59.872 43.478 0.00 0.00 0.00 1.78
887 908 3.128589 GTGGGTGCGTGTGATTTCAATAT 59.871 43.478 0.00 0.00 0.00 1.28
888 909 2.486203 GTGGGTGCGTGTGATTTCAATA 59.514 45.455 0.00 0.00 0.00 1.90
889 910 1.269448 GTGGGTGCGTGTGATTTCAAT 59.731 47.619 0.00 0.00 0.00 2.57
890 911 0.665835 GTGGGTGCGTGTGATTTCAA 59.334 50.000 0.00 0.00 0.00 2.69
891 912 0.179032 AGTGGGTGCGTGTGATTTCA 60.179 50.000 0.00 0.00 0.00 2.69
892 913 0.951558 AAGTGGGTGCGTGTGATTTC 59.048 50.000 0.00 0.00 0.00 2.17
893 914 0.667993 CAAGTGGGTGCGTGTGATTT 59.332 50.000 0.00 0.00 0.00 2.17
894 915 1.795170 GCAAGTGGGTGCGTGTGATT 61.795 55.000 0.00 0.00 34.21 2.57
923 944 2.359602 CAGTGACAGGCAGGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
944 965 2.803155 TAAGGACGGCAAGCCAGCAG 62.803 60.000 12.19 0.00 35.83 4.24
946 967 0.179056 TATAAGGACGGCAAGCCAGC 60.179 55.000 12.19 1.75 35.37 4.85
948 969 4.081309 GGTATATATAAGGACGGCAAGCCA 60.081 45.833 12.19 0.00 35.37 4.75
953 974 3.025978 CGGGGTATATATAAGGACGGCA 58.974 50.000 0.00 0.00 0.00 5.69
985 1006 0.543749 GGGATGTGGAGTGGAGGAAG 59.456 60.000 0.00 0.00 0.00 3.46
1045 1066 1.073125 TGCCTCGATGGAAACTGGAAA 59.927 47.619 5.24 0.00 38.35 3.13
1046 1067 0.690192 TGCCTCGATGGAAACTGGAA 59.310 50.000 5.24 0.00 38.35 3.53
1047 1068 0.690192 TTGCCTCGATGGAAACTGGA 59.310 50.000 5.24 0.00 38.35 3.86
1048 1069 1.672881 GATTGCCTCGATGGAAACTGG 59.327 52.381 0.00 0.00 35.84 4.00
1049 1070 1.672881 GGATTGCCTCGATGGAAACTG 59.327 52.381 0.00 0.00 35.84 3.16
1050 1071 1.561542 AGGATTGCCTCGATGGAAACT 59.438 47.619 0.00 0.00 42.19 2.66
1051 1072 1.672881 CAGGATTGCCTCGATGGAAAC 59.327 52.381 0.00 0.00 44.80 2.78
1157 1178 7.796660 GCCAATACATACACACAAATATACACG 59.203 37.037 0.00 0.00 0.00 4.49
1220 1241 8.731275 ATCGATAACCAAAGTTAATCATGACA 57.269 30.769 0.00 0.00 41.68 3.58
1426 1447 3.909258 GACGTCGAGGCAGCGGAAA 62.909 63.158 4.75 0.00 0.00 3.13
1601 1622 7.651704 CGTGAAACTTCAAATCAAATTAACCCT 59.348 33.333 0.00 0.00 39.21 4.34
1743 1764 8.895141 TGTATGCATGGTAGACTATTAGGTAT 57.105 34.615 10.16 0.00 0.00 2.73
1809 1831 7.038516 TGTCTATAGTGGATCGGAGTAGTATGA 60.039 40.741 0.00 0.00 0.00 2.15
1849 1871 6.126409 ACATATGTTATTGTTAGTGGGGTGG 58.874 40.000 1.41 0.00 0.00 4.61
1860 1882 7.331687 GCTTTGCAAAAGGACATATGTTATTGT 59.668 33.333 13.84 0.46 0.00 2.71
1987 2015 6.475727 CGATCATAAACTGTACCCAACTACTG 59.524 42.308 0.00 0.00 0.00 2.74
1988 2016 6.154021 ACGATCATAAACTGTACCCAACTACT 59.846 38.462 0.00 0.00 0.00 2.57
2003 2031 7.332430 ACGGATGTTTTAGTTCACGATCATAAA 59.668 33.333 0.00 0.00 0.00 1.40
2046 2077 1.696884 TGGTGGTTGCAGTCTGTCATA 59.303 47.619 0.93 0.00 0.00 2.15
2418 2459 2.213499 CTCACATCTAATTCCGGCACC 58.787 52.381 0.00 0.00 0.00 5.01
2609 2673 3.788434 TCTTCGCATTGTTCGTTTCTC 57.212 42.857 0.00 0.00 0.00 2.87
2745 2812 3.411446 TCTTGTACTTGCCTGTTCCATG 58.589 45.455 0.00 0.00 0.00 3.66
2755 2822 2.966050 ACAGCTAGCTCTTGTACTTGC 58.034 47.619 16.15 0.00 35.30 4.01
2784 2851 9.890629 AACTTGCAATTATCTTATACTGACTCA 57.109 29.630 0.00 0.00 0.00 3.41
2788 2855 7.279981 ACGCAACTTGCAATTATCTTATACTGA 59.720 33.333 14.10 0.00 45.36 3.41
2821 2911 2.688446 TGACCTGGATTGTAGCGACTAG 59.312 50.000 0.00 0.00 0.00 2.57
2822 2912 2.730382 TGACCTGGATTGTAGCGACTA 58.270 47.619 0.00 0.00 0.00 2.59
2846 2936 7.201556 GGATCGATGATGTTGCGATATAATGTT 60.202 37.037 0.54 0.00 43.91 2.71
2848 2938 6.292542 GGGATCGATGATGTTGCGATATAATG 60.293 42.308 0.54 0.00 43.91 1.90
2855 2945 0.597377 CGGGATCGATGATGTTGCGA 60.597 55.000 0.54 0.00 39.00 5.10
2858 2948 1.560004 CGCCGGGATCGATGATGTTG 61.560 60.000 0.54 0.00 39.00 3.33
2859 2949 1.300931 CGCCGGGATCGATGATGTT 60.301 57.895 0.54 0.00 39.00 2.71
2861 2951 3.114616 GCGCCGGGATCGATGATG 61.115 66.667 0.54 0.00 39.00 3.07
2862 2952 3.306311 AGCGCCGGGATCGATGAT 61.306 61.111 0.54 0.00 39.00 2.45
2863 2953 4.284860 CAGCGCCGGGATCGATGA 62.285 66.667 12.03 0.00 44.95 2.92
2864 2954 3.580100 ATCAGCGCCGGGATCGATG 62.580 63.158 11.31 11.31 43.71 3.84
2865 2955 2.383245 AAATCAGCGCCGGGATCGAT 62.383 55.000 2.29 0.00 39.00 3.59
2866 2956 1.740332 TAAATCAGCGCCGGGATCGA 61.740 55.000 2.29 0.00 39.00 3.59
2867 2957 0.670546 ATAAATCAGCGCCGGGATCG 60.671 55.000 2.29 0.00 0.00 3.69
2868 2958 2.271800 CTATAAATCAGCGCCGGGATC 58.728 52.381 2.29 0.00 0.00 3.36
2869 2959 1.623811 ACTATAAATCAGCGCCGGGAT 59.376 47.619 2.29 1.73 0.00 3.85
2870 2960 1.045407 ACTATAAATCAGCGCCGGGA 58.955 50.000 2.29 0.00 0.00 5.14
2871 2961 2.736144 TACTATAAATCAGCGCCGGG 57.264 50.000 2.29 0.00 0.00 5.73
2872 2962 3.845178 TGATACTATAAATCAGCGCCGG 58.155 45.455 2.29 0.00 0.00 6.13
2873 2963 8.972262 ATATATGATACTATAAATCAGCGCCG 57.028 34.615 2.29 0.00 36.82 6.46
2887 2977 8.237949 GTGACGTTAGCACAGATATATGATACT 58.762 37.037 3.93 1.05 36.31 2.12
2888 2978 8.021396 TGTGACGTTAGCACAGATATATGATAC 58.979 37.037 3.93 0.00 41.00 2.24
2889 2979 8.106247 TGTGACGTTAGCACAGATATATGATA 57.894 34.615 3.93 0.00 41.00 2.15
2890 2980 6.981722 TGTGACGTTAGCACAGATATATGAT 58.018 36.000 3.93 0.00 41.00 2.45
2891 2981 6.385649 TGTGACGTTAGCACAGATATATGA 57.614 37.500 3.93 0.00 41.00 2.15
2907 2997 3.243636 ACTCCGTTGATACTTTGTGACGT 60.244 43.478 0.00 0.00 0.00 4.34
2908 2998 3.314553 ACTCCGTTGATACTTTGTGACG 58.685 45.455 0.00 0.00 0.00 4.35
2917 3007 6.969828 AGAAGATGAAAACTCCGTTGATAC 57.030 37.500 0.00 0.00 0.00 2.24
2920 3010 6.238648 GGAAAAGAAGATGAAAACTCCGTTGA 60.239 38.462 0.00 0.00 0.00 3.18
2923 3013 5.377478 AGGAAAAGAAGATGAAAACTCCGT 58.623 37.500 0.00 0.00 0.00 4.69
2952 3045 4.764823 AGACCTTTTCACATATCCGCAAAA 59.235 37.500 0.00 0.00 0.00 2.44
2991 3087 9.436957 GGAACAACAATTCACTATAGAAGAAGA 57.563 33.333 6.78 0.00 0.00 2.87
2992 3088 9.442047 AGGAACAACAATTCACTATAGAAGAAG 57.558 33.333 6.78 2.82 0.00 2.85
2993 3089 9.219603 CAGGAACAACAATTCACTATAGAAGAA 57.780 33.333 6.78 10.37 0.00 2.52
2994 3090 8.593679 TCAGGAACAACAATTCACTATAGAAGA 58.406 33.333 6.78 1.07 0.00 2.87
2995 3091 8.777865 TCAGGAACAACAATTCACTATAGAAG 57.222 34.615 6.78 0.00 0.00 2.85
2996 3092 9.739276 ATTCAGGAACAACAATTCACTATAGAA 57.261 29.630 6.78 0.00 0.00 2.10
3003 3099 9.346725 GAGAAATATTCAGGAACAACAATTCAC 57.653 33.333 0.00 0.00 0.00 3.18
3047 3148 3.442273 TCACTCCGTTGAACAAAAAGCTT 59.558 39.130 0.00 0.00 0.00 3.74
3049 3150 3.414549 TCACTCCGTTGAACAAAAAGC 57.585 42.857 0.00 0.00 0.00 3.51
3057 3158 3.611970 TGGTTTCTTTCACTCCGTTGAA 58.388 40.909 0.00 0.00 33.55 2.69
3060 3161 6.001460 TGATTATGGTTTCTTTCACTCCGTT 58.999 36.000 0.00 0.00 0.00 4.44
3091 3192 9.513906 TTATTCACTGTCATTTCTCCAATAACA 57.486 29.630 0.00 0.00 0.00 2.41
3092 3193 9.994432 CTTATTCACTGTCATTTCTCCAATAAC 57.006 33.333 0.00 0.00 0.00 1.89
3093 3194 9.739276 ACTTATTCACTGTCATTTCTCCAATAA 57.261 29.630 0.00 0.00 0.00 1.40
3095 3196 8.641498 AACTTATTCACTGTCATTTCTCCAAT 57.359 30.769 0.00 0.00 0.00 3.16
3106 3207 8.305317 ACCTAGTTCAGTAACTTATTCACTGTC 58.695 37.037 0.00 0.00 43.60 3.51
3198 3299 2.885894 ACTAAGCGCTCCAGATAGTACC 59.114 50.000 21.95 0.00 0.00 3.34
3211 3312 4.625972 TTGCCCTAATTTAACTAAGCGC 57.374 40.909 0.00 0.00 0.00 5.92
3212 3313 5.034797 GCTTTGCCCTAATTTAACTAAGCG 58.965 41.667 0.00 0.00 31.53 4.68
3237 3338 3.579335 GCTACTGGCCTACTACTATGC 57.421 52.381 3.32 0.00 34.27 3.14
3430 3532 4.478206 TGTCAGGCTAAGAAGATTCCTG 57.522 45.455 0.00 0.00 44.18 3.86
3445 3551 4.509230 CGGAATCACATAACTCATGTCAGG 59.491 45.833 0.00 0.00 44.99 3.86
3451 3557 5.496556 TGGTTTCGGAATCACATAACTCAT 58.503 37.500 0.00 0.00 0.00 2.90
3686 3839 6.969828 ACTGCTAGTTTACTTAACAGCATC 57.030 37.500 5.74 0.00 43.39 3.91
3705 3858 3.490399 GAGACGACAAGTACAGTACTGC 58.510 50.000 22.90 7.58 39.39 4.40
3821 4093 6.681777 AGAAGAAGATTTGGTTCCAAAATCG 58.318 36.000 18.85 0.00 39.05 3.34
3855 4127 2.545952 CCACTCGCTTGACAACTAGTGT 60.546 50.000 0.00 0.00 45.74 3.55
3919 4191 9.533253 AAAATAAACAAGGTTTTGAGTCATCAG 57.467 29.630 0.00 0.00 36.61 2.90
3989 4261 2.746362 AGCTCATAGTCAAGCTGTTTGC 59.254 45.455 0.00 0.00 46.78 3.68
4030 4302 0.532573 TTCAGAGTCCACAGCCGATC 59.467 55.000 0.00 0.00 0.00 3.69
4236 4845 0.994247 ATCCTCTTGTGCATGTCCCA 59.006 50.000 0.00 0.00 0.00 4.37
4237 4846 1.386533 CATCCTCTTGTGCATGTCCC 58.613 55.000 0.00 0.00 0.00 4.46
4245 4878 2.608752 GCCAAAACTGCATCCTCTTGTG 60.609 50.000 0.00 0.00 0.00 3.33
4289 4922 3.856521 TGCAAAAAGATCAACACACAACG 59.143 39.130 0.00 0.00 0.00 4.10
4564 6058 4.386951 CACCCCCGCGTCATGTCA 62.387 66.667 4.92 0.00 0.00 3.58
4799 6297 0.622665 AAGCTTGGTGAGGAGATGGG 59.377 55.000 0.00 0.00 0.00 4.00
4836 6334 0.520404 TGAGAGAGTTGTACGGACGC 59.480 55.000 0.00 0.00 0.00 5.19
4848 6346 1.974236 ACAAAGTGGAGGGTGAGAGAG 59.026 52.381 0.00 0.00 0.00 3.20
4895 6428 3.056832 ACAGGAAGGGAGGAGAACTTTT 58.943 45.455 0.00 0.00 0.00 2.27
4896 6429 2.707554 ACAGGAAGGGAGGAGAACTTT 58.292 47.619 0.00 0.00 0.00 2.66
4897 6430 2.424684 ACAGGAAGGGAGGAGAACTT 57.575 50.000 0.00 0.00 0.00 2.66
4898 6431 2.373502 CAAACAGGAAGGGAGGAGAACT 59.626 50.000 0.00 0.00 0.00 3.01
4899 6432 2.106684 ACAAACAGGAAGGGAGGAGAAC 59.893 50.000 0.00 0.00 0.00 3.01
4900 6433 2.418669 ACAAACAGGAAGGGAGGAGAA 58.581 47.619 0.00 0.00 0.00 2.87
4901 6434 2.118403 ACAAACAGGAAGGGAGGAGA 57.882 50.000 0.00 0.00 0.00 3.71
4902 6435 3.072476 TGTTACAAACAGGAAGGGAGGAG 59.928 47.826 0.00 0.00 36.25 3.69
4903 6436 3.050089 TGTTACAAACAGGAAGGGAGGA 58.950 45.455 0.00 0.00 36.25 3.71
4904 6437 3.502123 TGTTACAAACAGGAAGGGAGG 57.498 47.619 0.00 0.00 36.25 4.30
4984 6519 8.229811 GCATACATCGCATGATTTCTAATGTTA 58.770 33.333 0.00 0.00 30.49 2.41
5073 6610 2.799371 GCCTGGACGTACTCTCGG 59.201 66.667 0.00 0.00 34.94 4.63
5086 6623 6.645415 CCTTCTATAAAACTATGGTACGCCTG 59.355 42.308 0.00 0.00 35.27 4.85
5141 6679 2.324860 CTACACTCGTTGTTCGCATCA 58.675 47.619 0.00 0.00 39.91 3.07
5162 6700 0.806884 TTGTCGGTGTGGTGTTCGTC 60.807 55.000 0.00 0.00 0.00 4.20
5207 6745 3.070015 AGGCTTTTTGCATTGTAGCTTGT 59.930 39.130 0.00 0.00 45.15 3.16
5272 6811 0.179018 AGTGTGGTCTTTGGAGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
5280 6819 0.468226 TCTGCGGAAGTGTGGTCTTT 59.532 50.000 0.00 0.00 0.00 2.52
5301 6840 1.370609 TGGTGCGTCGACAAAAGAAA 58.629 45.000 17.16 0.00 0.00 2.52
5306 6845 1.069935 TGGATGGTGCGTCGACAAA 59.930 52.632 17.16 0.00 0.00 2.83
5388 6927 1.216977 CGTCGGTGTATCCAAGGCA 59.783 57.895 0.00 0.00 35.57 4.75
5566 7105 2.457598 TGGTGGATGTCTCTAGGTGAC 58.542 52.381 9.03 9.03 35.21 3.67
5572 7111 1.548719 CGGTGTTGGTGGATGTCTCTA 59.451 52.381 0.00 0.00 0.00 2.43
5573 7112 0.321671 CGGTGTTGGTGGATGTCTCT 59.678 55.000 0.00 0.00 0.00 3.10
5720 7259 1.705002 TACCAATCCCATGGAGGCGG 61.705 60.000 15.22 10.91 43.54 6.13
5745 7284 1.071471 CGGTGTGAGGCTTCTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
5892 7432 2.753029 GCAGTCCTGGACTTGGCT 59.247 61.111 26.37 2.92 41.37 4.75
5936 7476 1.169661 TGATTGTCGCAAGGCCGTTT 61.170 50.000 0.00 0.00 45.49 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.