Multiple sequence alignment - TraesCS6B01G247300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G247300 chr6B 100.000 5463 0 0 1 5463 439397663 439403125 0.000000e+00 10089
1 TraesCS6B01G247300 chr6B 98.848 1128 13 0 2825 3952 308501129 308502256 0.000000e+00 2012
2 TraesCS6B01G247300 chr6B 100.000 169 0 0 2052 2220 641890693 641890525 4.110000e-81 313
3 TraesCS6B01G247300 chr6D 96.838 1929 45 8 136 2054 277669207 277671129 0.000000e+00 3210
4 TraesCS6B01G247300 chr6D 96.566 1485 36 5 3993 5463 277671752 277673235 0.000000e+00 2446
5 TraesCS6B01G247300 chr6D 97.264 402 11 0 2224 2625 277671113 277671514 0.000000e+00 682
6 TraesCS6B01G247300 chr6D 98.319 238 4 0 2591 2828 277671514 277671751 8.460000e-113 418
7 TraesCS6B01G247300 chr6D 87.170 265 32 2 2377 2640 2867063 2867326 3.200000e-77 300
8 TraesCS6B01G247300 chr6A 96.162 1485 42 4 3993 5463 400122777 400124260 0.000000e+00 2412
9 TraesCS6B01G247300 chr6A 95.727 1334 41 4 730 2048 400120891 400122223 0.000000e+00 2134
10 TraesCS6B01G247300 chr6A 90.774 607 32 8 132 724 400120090 400120686 0.000000e+00 789
11 TraesCS6B01G247300 chr6A 96.684 392 13 0 2224 2615 400122213 400122604 0.000000e+00 652
12 TraesCS6B01G247300 chr6A 93.956 182 2 1 2647 2828 400122604 400122776 3.240000e-67 267
13 TraesCS6B01G247300 chr1B 98.229 1129 20 0 2824 3952 95657430 95658558 0.000000e+00 1975
14 TraesCS6B01G247300 chr5B 97.166 1129 32 0 2824 3952 474781246 474780118 0.000000e+00 1908
15 TraesCS6B01G247300 chr5B 99.419 172 1 0 2049 2220 660145637 660145808 4.110000e-81 313
16 TraesCS6B01G247300 chr2A 97.163 1128 32 0 2825 3952 306162445 306163572 0.000000e+00 1906
17 TraesCS6B01G247300 chr2A 93.174 1128 72 2 2825 3952 419203467 419202345 0.000000e+00 1652
18 TraesCS6B01G247300 chr3D 95.394 1129 52 0 2824 3952 141471838 141470710 0.000000e+00 1797
19 TraesCS6B01G247300 chr3D 88.095 252 24 3 2377 2627 239612381 239612627 1.490000e-75 294
20 TraesCS6B01G247300 chr5D 93.528 1128 73 0 2825 3952 370419914 370421041 0.000000e+00 1679
21 TraesCS6B01G247300 chr5D 86.517 267 32 2 2378 2640 281028538 281028804 1.930000e-74 291
22 TraesCS6B01G247300 chr7A 93.262 1128 76 0 2825 3952 579804135 579803008 0.000000e+00 1663
23 TraesCS6B01G247300 chr7A 91.667 1128 91 3 2825 3952 408773228 408772104 0.000000e+00 1559
24 TraesCS6B01G247300 chr4D 90.323 248 22 2 2378 2625 233099226 233098981 1.900000e-84 324
25 TraesCS6B01G247300 chr1A 100.000 171 0 0 2049 2219 83828087 83827917 3.180000e-82 316
26 TraesCS6B01G247300 chr1A 100.000 169 0 0 2052 2220 538399453 538399285 4.110000e-81 313
27 TraesCS6B01G247300 chr1A 91.480 223 19 0 2378 2600 181770853 181770631 1.910000e-79 307
28 TraesCS6B01G247300 chr1A 85.985 264 29 6 2378 2640 493664575 493664319 5.390000e-70 276
29 TraesCS6B01G247300 chr5A 99.419 172 1 0 2049 2220 13889443 13889614 4.110000e-81 313
30 TraesCS6B01G247300 chr5A 98.857 175 2 0 2049 2223 360072706 360072880 4.110000e-81 313
31 TraesCS6B01G247300 chr5A 99.419 172 1 0 2049 2220 596662175 596662346 4.110000e-81 313
32 TraesCS6B01G247300 chr4B 99.419 172 1 0 2052 2223 193970662 193970491 4.110000e-81 313
33 TraesCS6B01G247300 chr4B 99.419 172 1 0 2049 2220 304887910 304888081 4.110000e-81 313
34 TraesCS6B01G247300 chrUn 91.518 224 19 0 2378 2601 53802989 53802766 5.310000e-80 309
35 TraesCS6B01G247300 chr4A 86.667 150 18 2 2410 2558 274766399 274766547 1.220000e-36 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G247300 chr6B 439397663 439403125 5462 False 10089.0 10089 100.00000 1 5463 1 chr6B.!!$F2 5462
1 TraesCS6B01G247300 chr6B 308501129 308502256 1127 False 2012.0 2012 98.84800 2825 3952 1 chr6B.!!$F1 1127
2 TraesCS6B01G247300 chr6D 277669207 277673235 4028 False 1689.0 3210 97.24675 136 5463 4 chr6D.!!$F2 5327
3 TraesCS6B01G247300 chr6A 400120090 400124260 4170 False 1250.8 2412 94.66060 132 5463 5 chr6A.!!$F1 5331
4 TraesCS6B01G247300 chr1B 95657430 95658558 1128 False 1975.0 1975 98.22900 2824 3952 1 chr1B.!!$F1 1128
5 TraesCS6B01G247300 chr5B 474780118 474781246 1128 True 1908.0 1908 97.16600 2824 3952 1 chr5B.!!$R1 1128
6 TraesCS6B01G247300 chr2A 306162445 306163572 1127 False 1906.0 1906 97.16300 2825 3952 1 chr2A.!!$F1 1127
7 TraesCS6B01G247300 chr2A 419202345 419203467 1122 True 1652.0 1652 93.17400 2825 3952 1 chr2A.!!$R1 1127
8 TraesCS6B01G247300 chr3D 141470710 141471838 1128 True 1797.0 1797 95.39400 2824 3952 1 chr3D.!!$R1 1128
9 TraesCS6B01G247300 chr5D 370419914 370421041 1127 False 1679.0 1679 93.52800 2825 3952 1 chr5D.!!$F2 1127
10 TraesCS6B01G247300 chr7A 579803008 579804135 1127 True 1663.0 1663 93.26200 2825 3952 1 chr7A.!!$R2 1127
11 TraesCS6B01G247300 chr7A 408772104 408773228 1124 True 1559.0 1559 91.66700 2825 3952 1 chr7A.!!$R1 1127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.034756 CAGATTGTCCACACGGTCCA 59.965 55.0 0.00 0.00 0.00 4.02 F
72 73 0.035820 TCCACACGGTCCAAATAGGC 60.036 55.0 0.00 0.00 37.29 3.93 F
242 243 0.037790 GCTCACTCACTCAGGTGGTC 60.038 60.0 0.00 0.00 43.17 4.02 F
2072 2303 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
2096 2327 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
2105 2336 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.0 0.00 0.00 35.79 3.53 F
2152 2383 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.0 0.00 0.00 0.00 4.51 F
3952 4217 0.536006 GGCACACTCTGCTCCAGTTT 60.536 55.0 0.00 0.00 46.25 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2284 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00 R
2066 2297 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
2086 2317 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94 R
3952 4217 0.882927 GGGGCGCGAATGCAAGTATA 60.883 55.000 12.10 0.00 42.97 1.47 R
3969 4234 1.213537 CGAATGCAAGCAGTTGGGG 59.786 57.895 0.00 0.00 33.87 4.96 R
3970 4235 1.444895 GCGAATGCAAGCAGTTGGG 60.445 57.895 11.23 0.00 42.15 4.12 R
3971 4236 1.798725 CGCGAATGCAAGCAGTTGG 60.799 57.895 0.00 1.73 42.97 3.77 R
5308 5587 0.328258 GGGCTTCAGGCAACCTCTTA 59.672 55.000 2.41 0.00 44.01 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.282532 TGGATGCCGCCGGAAAAA 60.283 55.556 7.68 0.00 0.00 1.94
18 19 2.339556 TGGATGCCGCCGGAAAAAG 61.340 57.895 7.68 0.00 0.00 2.27
19 20 2.489751 GATGCCGCCGGAAAAAGG 59.510 61.111 7.68 0.05 0.00 3.11
20 21 2.034999 ATGCCGCCGGAAAAAGGA 59.965 55.556 7.68 0.00 0.00 3.36
21 22 2.266376 GATGCCGCCGGAAAAAGGAC 62.266 60.000 7.68 0.00 0.00 3.85
22 23 3.744719 GCCGCCGGAAAAAGGACC 61.745 66.667 7.68 0.00 0.00 4.46
23 24 2.281900 CCGCCGGAAAAAGGACCA 60.282 61.111 5.05 0.00 0.00 4.02
24 25 1.899534 CCGCCGGAAAAAGGACCAA 60.900 57.895 5.05 0.00 0.00 3.67
25 26 1.284715 CGCCGGAAAAAGGACCAAC 59.715 57.895 5.05 0.00 0.00 3.77
26 27 1.284715 GCCGGAAAAAGGACCAACG 59.715 57.895 5.05 0.00 0.00 4.10
27 28 1.953772 CCGGAAAAAGGACCAACGG 59.046 57.895 0.00 0.00 0.00 4.44
28 29 0.820482 CCGGAAAAAGGACCAACGGT 60.820 55.000 0.00 0.00 39.44 4.83
29 30 0.309612 CGGAAAAAGGACCAACGGTG 59.690 55.000 0.00 0.00 35.25 4.94
47 48 2.033448 GGCACCATCCGGTTGACA 59.967 61.111 14.27 0.00 46.31 3.58
48 49 2.040544 GGCACCATCCGGTTGACAG 61.041 63.158 14.27 4.54 46.31 3.51
49 50 1.003839 GCACCATCCGGTTGACAGA 60.004 57.895 14.27 0.00 46.31 3.41
50 51 0.392998 GCACCATCCGGTTGACAGAT 60.393 55.000 14.27 0.00 46.31 2.90
51 52 1.950484 GCACCATCCGGTTGACAGATT 60.950 52.381 14.27 0.00 46.31 2.40
52 53 1.739466 CACCATCCGGTTGACAGATTG 59.261 52.381 14.27 0.00 46.31 2.67
53 54 1.351017 ACCATCCGGTTGACAGATTGT 59.649 47.619 14.27 0.00 46.31 2.71
54 55 2.615493 ACCATCCGGTTGACAGATTGTC 60.615 50.000 14.27 2.34 46.31 3.18
55 56 2.009774 CATCCGGTTGACAGATTGTCC 58.990 52.381 6.68 0.00 46.40 4.02
56 57 1.052617 TCCGGTTGACAGATTGTCCA 58.947 50.000 0.00 0.00 46.40 4.02
57 58 1.156736 CCGGTTGACAGATTGTCCAC 58.843 55.000 6.74 5.92 46.40 4.02
58 59 1.542328 CCGGTTGACAGATTGTCCACA 60.542 52.381 13.30 0.00 46.40 4.17
59 60 1.531149 CGGTTGACAGATTGTCCACAC 59.469 52.381 13.30 5.62 46.40 3.82
60 61 1.531149 GGTTGACAGATTGTCCACACG 59.469 52.381 13.30 0.00 46.40 4.49
61 62 1.531149 GTTGACAGATTGTCCACACGG 59.469 52.381 6.74 0.00 46.40 4.94
62 63 0.756294 TGACAGATTGTCCACACGGT 59.244 50.000 6.74 0.00 46.40 4.83
63 64 1.270094 TGACAGATTGTCCACACGGTC 60.270 52.381 6.74 0.00 46.40 4.79
64 65 0.034896 ACAGATTGTCCACACGGTCC 59.965 55.000 0.00 0.00 0.00 4.46
65 66 0.034756 CAGATTGTCCACACGGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
66 67 0.762418 AGATTGTCCACACGGTCCAA 59.238 50.000 0.00 0.00 0.00 3.53
67 68 1.142060 AGATTGTCCACACGGTCCAAA 59.858 47.619 0.00 0.00 31.25 3.28
68 69 2.159382 GATTGTCCACACGGTCCAAAT 58.841 47.619 0.00 0.00 31.25 2.32
69 70 2.932855 TTGTCCACACGGTCCAAATA 57.067 45.000 0.00 0.00 0.00 1.40
70 71 2.465860 TGTCCACACGGTCCAAATAG 57.534 50.000 0.00 0.00 0.00 1.73
71 72 1.002659 TGTCCACACGGTCCAAATAGG 59.997 52.381 0.00 0.00 39.47 2.57
72 73 0.035820 TCCACACGGTCCAAATAGGC 60.036 55.000 0.00 0.00 37.29 3.93
73 74 1.366111 CCACACGGTCCAAATAGGCG 61.366 60.000 0.00 0.00 37.29 5.52
74 75 1.743995 ACACGGTCCAAATAGGCGC 60.744 57.895 0.00 0.00 37.29 6.53
75 76 2.510691 ACGGTCCAAATAGGCGCG 60.511 61.111 0.00 0.00 37.29 6.86
76 77 3.269347 CGGTCCAAATAGGCGCGG 61.269 66.667 8.83 0.00 37.29 6.46
77 78 3.583086 GGTCCAAATAGGCGCGGC 61.583 66.667 27.06 27.06 37.29 6.53
106 107 4.902645 GGCCCTGCACCATAGCCC 62.903 72.222 0.00 0.00 37.66 5.19
107 108 4.127744 GCCCTGCACCATAGCCCA 62.128 66.667 0.00 0.00 0.00 5.36
108 109 2.682846 CCCTGCACCATAGCCCAA 59.317 61.111 0.00 0.00 0.00 4.12
109 110 1.754234 CCCTGCACCATAGCCCAAC 60.754 63.158 0.00 0.00 0.00 3.77
110 111 2.114670 CCTGCACCATAGCCCAACG 61.115 63.158 0.00 0.00 0.00 4.10
111 112 2.045438 TGCACCATAGCCCAACGG 60.045 61.111 0.00 0.00 0.00 4.44
122 123 2.362375 CCAACGGGAATGGGGTGG 60.362 66.667 0.00 0.00 35.59 4.61
123 124 2.438795 CAACGGGAATGGGGTGGT 59.561 61.111 0.00 0.00 0.00 4.16
124 125 1.677633 CAACGGGAATGGGGTGGTC 60.678 63.158 0.00 0.00 0.00 4.02
125 126 3.262448 AACGGGAATGGGGTGGTCG 62.262 63.158 0.00 0.00 0.00 4.79
126 127 3.712907 CGGGAATGGGGTGGTCGT 61.713 66.667 0.00 0.00 0.00 4.34
127 128 2.360767 CGGGAATGGGGTGGTCGTA 61.361 63.158 0.00 0.00 0.00 3.43
128 129 1.222661 GGGAATGGGGTGGTCGTAC 59.777 63.158 0.00 0.00 0.00 3.67
129 130 1.222661 GGAATGGGGTGGTCGTACC 59.777 63.158 0.00 0.00 40.10 3.34
183 184 1.000896 CCCGAGTCCCCAATTGCTT 60.001 57.895 0.00 0.00 0.00 3.91
232 233 2.183046 GGCTCTCCGCTCACTCAC 59.817 66.667 0.00 0.00 39.13 3.51
233 234 2.347322 GGCTCTCCGCTCACTCACT 61.347 63.158 0.00 0.00 39.13 3.41
234 235 1.138671 GCTCTCCGCTCACTCACTC 59.861 63.158 0.00 0.00 35.14 3.51
235 236 1.590610 GCTCTCCGCTCACTCACTCA 61.591 60.000 0.00 0.00 35.14 3.41
237 238 0.962855 TCTCCGCTCACTCACTCAGG 60.963 60.000 0.00 0.00 0.00 3.86
238 239 1.228583 TCCGCTCACTCACTCAGGT 60.229 57.895 0.00 0.00 0.00 4.00
239 240 1.080230 CCGCTCACTCACTCAGGTG 60.080 63.158 0.00 0.00 44.23 4.00
240 241 1.080230 CGCTCACTCACTCAGGTGG 60.080 63.158 0.00 0.00 43.17 4.61
242 243 0.037790 GCTCACTCACTCAGGTGGTC 60.038 60.000 0.00 0.00 43.17 4.02
243 244 1.626686 CTCACTCACTCAGGTGGTCT 58.373 55.000 0.00 0.00 43.17 3.85
244 245 1.967066 CTCACTCACTCAGGTGGTCTT 59.033 52.381 0.00 0.00 43.17 3.01
257 258 1.035385 TGGTCTTAGCGCTCCATCGA 61.035 55.000 16.34 1.00 0.00 3.59
267 268 1.431488 GCTCCATCGAATCGCTGCAA 61.431 55.000 0.44 0.00 0.00 4.08
274 275 1.134699 TCGAATCGCTGCAATCTTCCT 60.135 47.619 0.00 0.00 0.00 3.36
293 294 1.590792 GCCGGTCGTTTCCCTATCG 60.591 63.158 1.90 0.00 0.00 2.92
359 365 1.486310 CCTCTGATTTCCGGTGGATCA 59.514 52.381 0.00 8.99 37.04 2.92
415 421 4.021925 ACGGAGGCTTCTGTGGGC 62.022 66.667 9.89 0.00 41.40 5.36
456 462 4.498323 CGTCGGCTAATGTAGTGTTAAGAC 59.502 45.833 0.00 0.00 0.00 3.01
458 464 3.795101 CGGCTAATGTAGTGTTAAGACCG 59.205 47.826 0.00 0.00 0.00 4.79
489 495 6.152492 TGCCACATTATTTCATCTACTTTGCA 59.848 34.615 0.00 0.00 0.00 4.08
587 593 6.583806 CGTAGTACTGTAGTTGGAATTTCGTT 59.416 38.462 5.39 0.00 0.00 3.85
716 733 6.105333 TCCCAAGAAAAACATTCTGTTGTTG 58.895 36.000 0.30 0.71 37.88 3.33
799 1015 0.321671 TAGGTTCTGTGCTGCACTCC 59.678 55.000 30.43 24.39 35.11 3.85
869 1086 6.205658 GGATCTTAGATTGCATTAGGGTCAAC 59.794 42.308 0.00 0.00 0.00 3.18
912 1129 8.941995 AGCTACAGAATACACCTAATAGATCA 57.058 34.615 0.00 0.00 0.00 2.92
1180 1410 4.760530 TCTGTAGCTATTGGCATGAAGT 57.239 40.909 0.00 0.00 44.79 3.01
1261 1491 2.828520 GGAGGCGAGGATCATTCAGATA 59.171 50.000 0.00 0.00 37.00 1.98
1428 1658 5.867716 GCAAAAGTTAGAGACGGATAACTCA 59.132 40.000 0.00 0.00 40.47 3.41
1786 2016 3.211045 GAAACAGCCTTTCCACAGTGTA 58.789 45.455 0.00 0.00 0.00 2.90
1787 2017 3.290948 AACAGCCTTTCCACAGTGTAA 57.709 42.857 0.00 0.00 0.00 2.41
2052 2283 5.392767 TTCCGATCTGATATCTAAGGTGC 57.607 43.478 3.98 0.00 0.00 5.01
2053 2284 4.407365 TCCGATCTGATATCTAAGGTGCA 58.593 43.478 3.98 0.00 0.00 4.57
2054 2285 4.460731 TCCGATCTGATATCTAAGGTGCAG 59.539 45.833 3.98 0.00 0.00 4.41
2055 2286 4.219507 CCGATCTGATATCTAAGGTGCAGT 59.780 45.833 3.98 0.00 0.00 4.40
2056 2287 5.159925 CGATCTGATATCTAAGGTGCAGTG 58.840 45.833 3.98 0.00 0.00 3.66
2057 2288 4.944619 TCTGATATCTAAGGTGCAGTGG 57.055 45.455 3.98 0.00 0.00 4.00
2058 2289 4.290093 TCTGATATCTAAGGTGCAGTGGT 58.710 43.478 3.98 0.00 0.00 4.16
2059 2290 5.454966 TCTGATATCTAAGGTGCAGTGGTA 58.545 41.667 3.98 0.00 0.00 3.25
2060 2291 5.897250 TCTGATATCTAAGGTGCAGTGGTAA 59.103 40.000 3.98 0.00 0.00 2.85
2061 2292 6.382859 TCTGATATCTAAGGTGCAGTGGTAAA 59.617 38.462 3.98 0.00 0.00 2.01
2062 2293 6.582636 TGATATCTAAGGTGCAGTGGTAAAG 58.417 40.000 3.98 0.00 0.00 1.85
2063 2294 3.053831 TCTAAGGTGCAGTGGTAAAGC 57.946 47.619 0.00 0.00 0.00 3.51
2064 2295 2.637872 TCTAAGGTGCAGTGGTAAAGCT 59.362 45.455 0.00 0.00 0.00 3.74
2065 2296 1.609208 AAGGTGCAGTGGTAAAGCTG 58.391 50.000 0.00 0.00 35.93 4.24
2070 2301 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2071 2302 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2072 2303 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2073 2304 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2074 2305 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2075 2306 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2076 2307 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2077 2308 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2078 2309 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2079 2310 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2080 2311 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2081 2312 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2082 2313 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2083 2314 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2084 2315 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2094 2325 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2095 2326 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2096 2327 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2097 2328 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2098 2329 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2099 2330 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2100 2331 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2101 2332 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2102 2333 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2103 2334 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2104 2335 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2105 2336 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2106 2337 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2107 2338 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2108 2339 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2122 2353 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2123 2354 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2124 2355 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2125 2356 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2126 2357 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2127 2358 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2128 2359 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2129 2360 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2130 2361 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2131 2362 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2132 2363 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2133 2364 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2134 2365 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2135 2366 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2136 2367 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2137 2368 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2138 2369 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2139 2370 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2140 2371 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2141 2372 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2142 2373 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2143 2374 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2144 2375 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2145 2376 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2146 2377 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2147 2378 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2148 2379 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2149 2380 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2150 2381 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2151 2382 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2152 2383 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2153 2384 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2154 2385 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2155 2386 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2156 2387 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2157 2388 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2158 2389 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2159 2390 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2164 2395 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2165 2396 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2166 2397 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2167 2398 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2168 2399 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2169 2400 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2170 2401 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2171 2402 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2172 2403 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2173 2404 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2174 2405 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
2175 2406 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
2176 2407 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
2177 2408 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2178 2409 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2179 2410 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2180 2411 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2181 2412 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2182 2413 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2183 2414 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2204 2435 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2205 2436 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2206 2437 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2207 2438 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2208 2439 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2209 2440 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2210 2441 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2211 2442 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2212 2443 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2217 2448 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
2218 2449 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
2336 2567 1.207488 ATGCCCCTGCTCAAGTACCA 61.207 55.000 0.00 0.00 38.71 3.25
2498 2729 2.354403 GCTTGGCTTGGAGCAATTTGAT 60.354 45.455 0.00 0.00 44.75 2.57
2499 2730 3.119029 GCTTGGCTTGGAGCAATTTGATA 60.119 43.478 0.00 0.00 44.75 2.15
2709 2974 7.281100 AGTTTGGTTCAGTTTCTTAGAGAGTTG 59.719 37.037 0.00 0.00 0.00 3.16
3511 3776 1.000274 GTCCAGCGCCAAATCAACTTT 60.000 47.619 2.29 0.00 0.00 2.66
3952 4217 0.536006 GGCACACTCTGCTCCAGTTT 60.536 55.000 0.00 0.00 46.25 2.66
3953 4218 1.270839 GGCACACTCTGCTCCAGTTTA 60.271 52.381 0.00 0.00 46.25 2.01
3954 4219 2.616510 GGCACACTCTGCTCCAGTTTAT 60.617 50.000 0.00 0.00 46.25 1.40
3955 4220 3.369471 GGCACACTCTGCTCCAGTTTATA 60.369 47.826 0.00 0.00 46.25 0.98
3956 4221 3.619038 GCACACTCTGCTCCAGTTTATAC 59.381 47.826 0.00 0.00 43.33 1.47
3957 4222 4.621747 GCACACTCTGCTCCAGTTTATACT 60.622 45.833 0.00 0.00 43.33 2.12
3958 4223 5.482908 CACACTCTGCTCCAGTTTATACTT 58.517 41.667 0.00 0.00 32.61 2.24
3959 4224 5.349817 CACACTCTGCTCCAGTTTATACTTG 59.650 44.000 0.00 0.00 32.61 3.16
3960 4225 4.331168 CACTCTGCTCCAGTTTATACTTGC 59.669 45.833 0.00 0.00 32.61 4.01
3961 4226 4.020218 ACTCTGCTCCAGTTTATACTTGCA 60.020 41.667 0.00 0.00 33.98 4.08
3962 4227 5.102953 TCTGCTCCAGTTTATACTTGCAT 57.897 39.130 0.00 0.00 34.35 3.96
3963 4228 5.500234 TCTGCTCCAGTTTATACTTGCATT 58.500 37.500 0.00 0.00 34.35 3.56
3964 4229 5.586243 TCTGCTCCAGTTTATACTTGCATTC 59.414 40.000 0.00 0.00 34.35 2.67
3965 4230 4.332543 TGCTCCAGTTTATACTTGCATTCG 59.667 41.667 0.00 0.00 31.73 3.34
3966 4231 4.786609 GCTCCAGTTTATACTTGCATTCGC 60.787 45.833 0.00 0.00 32.93 4.70
3967 4232 3.308595 TCCAGTTTATACTTGCATTCGCG 59.691 43.478 0.00 0.00 34.48 5.87
3968 4233 3.029074 CAGTTTATACTTGCATTCGCGC 58.971 45.455 0.00 0.00 34.48 6.86
3969 4234 2.031683 AGTTTATACTTGCATTCGCGCC 59.968 45.455 0.00 0.00 42.97 6.53
3970 4235 0.941542 TTATACTTGCATTCGCGCCC 59.058 50.000 0.00 0.00 42.97 6.13
3971 4236 0.882927 TATACTTGCATTCGCGCCCC 60.883 55.000 0.00 0.00 42.97 5.80
3977 4242 3.814268 CATTCGCGCCCCCAACTG 61.814 66.667 0.00 0.00 0.00 3.16
3984 4249 2.999063 GCCCCCAACTGCTTGCAT 60.999 61.111 0.00 0.00 0.00 3.96
3985 4250 2.586293 GCCCCCAACTGCTTGCATT 61.586 57.895 0.00 0.00 0.00 3.56
3986 4251 1.593265 CCCCCAACTGCTTGCATTC 59.407 57.895 0.00 0.00 0.00 2.67
3987 4252 1.213537 CCCCAACTGCTTGCATTCG 59.786 57.895 0.00 0.00 0.00 3.34
3988 4253 1.444895 CCCAACTGCTTGCATTCGC 60.445 57.895 0.00 0.00 39.24 4.70
3989 4254 1.798725 CCAACTGCTTGCATTCGCG 60.799 57.895 0.00 0.00 42.97 5.87
3990 4255 2.126734 AACTGCTTGCATTCGCGC 60.127 55.556 0.00 0.00 42.97 6.86
3991 4256 3.615536 AACTGCTTGCATTCGCGCC 62.616 57.895 0.00 0.00 42.97 6.53
4235 4500 5.011635 AGTGGTGGTTAATTTTGAATGGGAC 59.988 40.000 0.00 0.00 0.00 4.46
4267 4532 6.674066 TCGTTCATAAACCATTCCAGAAAAC 58.326 36.000 0.00 0.00 31.27 2.43
4293 4558 8.764287 CAAACCTGGATTAATTCTTTTGTCAAC 58.236 33.333 0.00 0.00 0.00 3.18
4435 4700 6.442112 CCAAGAAACAAGGATGAAGAAACTC 58.558 40.000 0.00 0.00 0.00 3.01
4575 4840 2.714250 AGGTTTACCATCCTGTTGTCCA 59.286 45.455 1.13 0.00 38.89 4.02
4688 4963 6.327386 AGTACATGGATTTTACAGGGATGT 57.673 37.500 0.00 0.00 0.00 3.06
4740 5015 3.673543 TGTTGGTTTCTACCCAGGTTT 57.326 42.857 0.00 0.00 44.35 3.27
4784 5059 7.165485 TGCTACTTTGCAGGAGTATCTTTTTA 58.835 34.615 11.13 0.00 38.12 1.52
4835 5113 0.753479 ATTTTGTGTGCGGTGGACCA 60.753 50.000 0.00 0.00 35.14 4.02
4858 5136 5.814764 TTGTAGGTCGTTTTAACAGCAAA 57.185 34.783 0.00 0.00 0.00 3.68
4913 5191 1.807573 GGCTTGGCTCTTCGACGAG 60.808 63.158 14.25 14.25 34.98 4.18
4977 5255 6.835819 ATATGTCCTGTATGTATGCGTACT 57.164 37.500 16.78 5.62 37.82 2.73
5008 5287 1.876156 CAGGTGGTTTTCTCTGCAGTC 59.124 52.381 14.67 0.00 0.00 3.51
5072 5351 2.549754 CCATTTGACTCAGCTTTGACGT 59.450 45.455 0.00 0.00 0.00 4.34
5100 5379 1.101331 CTGGCAGCCTCCAAAATCTC 58.899 55.000 14.15 0.00 35.36 2.75
5249 5528 0.185901 AGGGTTGTGTGGTGCAGATT 59.814 50.000 0.00 0.00 0.00 2.40
5308 5587 7.482169 TCCTAATCAGTGATGTCTAACAACT 57.518 36.000 6.34 0.00 0.00 3.16
5413 5692 9.890352 GAAATAACTTCTGAATGCTGGATATTC 57.110 33.333 0.00 0.00 35.59 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.489751 CTTTTTCCGGCGGCATCC 59.510 61.111 23.83 0.00 0.00 3.51
2 3 2.043980 TCCTTTTTCCGGCGGCATC 61.044 57.895 23.83 0.00 0.00 3.91
3 4 2.034999 TCCTTTTTCCGGCGGCAT 59.965 55.556 23.83 0.00 0.00 4.40
5 6 3.744719 GGTCCTTTTTCCGGCGGC 61.745 66.667 23.83 3.90 0.00 6.53
6 7 1.899534 TTGGTCCTTTTTCCGGCGG 60.900 57.895 22.51 22.51 0.00 6.13
7 8 1.284715 GTTGGTCCTTTTTCCGGCG 59.715 57.895 0.00 0.00 0.00 6.46
8 9 1.284715 CGTTGGTCCTTTTTCCGGC 59.715 57.895 0.00 0.00 0.00 6.13
9 10 0.820482 ACCGTTGGTCCTTTTTCCGG 60.820 55.000 0.00 0.00 39.75 5.14
10 11 0.309612 CACCGTTGGTCCTTTTTCCG 59.690 55.000 0.00 0.00 31.02 4.30
11 12 0.671796 CCACCGTTGGTCCTTTTTCC 59.328 55.000 0.00 0.00 38.23 3.13
12 13 0.671796 CCCACCGTTGGTCCTTTTTC 59.328 55.000 0.00 0.00 42.10 2.29
13 14 1.396607 GCCCACCGTTGGTCCTTTTT 61.397 55.000 0.00 0.00 42.10 1.94
14 15 1.830847 GCCCACCGTTGGTCCTTTT 60.831 57.895 0.00 0.00 42.10 2.27
15 16 2.203437 GCCCACCGTTGGTCCTTT 60.203 61.111 0.00 0.00 42.10 3.11
16 17 3.494254 TGCCCACCGTTGGTCCTT 61.494 61.111 0.00 0.00 42.10 3.36
17 18 4.265056 GTGCCCACCGTTGGTCCT 62.265 66.667 0.00 0.00 42.10 3.85
32 33 4.720710 GACAATCTGTCAACCGGATGGTG 61.721 52.174 9.46 0.00 46.42 4.17
33 34 2.615493 GACAATCTGTCAACCGGATGGT 60.615 50.000 9.46 0.00 44.45 3.55
34 35 2.009774 GACAATCTGTCAACCGGATGG 58.990 52.381 9.46 0.00 46.22 3.51
44 45 1.429463 GACCGTGTGGACAATCTGTC 58.571 55.000 0.00 0.00 46.23 3.51
45 46 0.034896 GGACCGTGTGGACAATCTGT 59.965 55.000 0.00 0.00 39.21 3.41
46 47 0.034756 TGGACCGTGTGGACAATCTG 59.965 55.000 0.00 0.00 39.21 2.90
47 48 0.762418 TTGGACCGTGTGGACAATCT 59.238 50.000 0.00 0.00 39.21 2.40
48 49 1.600023 TTTGGACCGTGTGGACAATC 58.400 50.000 0.00 0.00 39.21 2.67
49 50 2.286365 ATTTGGACCGTGTGGACAAT 57.714 45.000 0.00 0.00 39.21 2.71
50 51 2.551287 CCTATTTGGACCGTGTGGACAA 60.551 50.000 0.00 0.00 39.21 3.18
51 52 1.002659 CCTATTTGGACCGTGTGGACA 59.997 52.381 0.00 0.00 39.21 4.02
52 53 1.734163 CCTATTTGGACCGTGTGGAC 58.266 55.000 0.00 0.00 39.21 4.02
53 54 0.035820 GCCTATTTGGACCGTGTGGA 60.036 55.000 0.00 0.00 38.35 4.02
54 55 1.366111 CGCCTATTTGGACCGTGTGG 61.366 60.000 0.00 0.00 38.35 4.17
55 56 1.977594 GCGCCTATTTGGACCGTGTG 61.978 60.000 0.00 0.00 38.35 3.82
56 57 1.743995 GCGCCTATTTGGACCGTGT 60.744 57.895 0.00 0.00 38.35 4.49
57 58 2.808958 CGCGCCTATTTGGACCGTG 61.809 63.158 0.00 0.00 38.35 4.94
58 59 2.510691 CGCGCCTATTTGGACCGT 60.511 61.111 0.00 0.00 38.35 4.83
59 60 3.269347 CCGCGCCTATTTGGACCG 61.269 66.667 0.00 0.00 38.35 4.79
60 61 3.583086 GCCGCGCCTATTTGGACC 61.583 66.667 0.00 0.00 38.35 4.46
61 62 3.583086 GGCCGCGCCTATTTGGAC 61.583 66.667 0.00 0.00 46.69 4.02
89 90 4.902645 GGGCTATGGTGCAGGGCC 62.903 72.222 0.00 0.00 41.80 5.80
90 91 3.660422 TTGGGCTATGGTGCAGGGC 62.660 63.158 0.00 0.00 34.04 5.19
91 92 1.754234 GTTGGGCTATGGTGCAGGG 60.754 63.158 0.00 0.00 34.04 4.45
92 93 2.114670 CGTTGGGCTATGGTGCAGG 61.115 63.158 0.00 0.00 34.04 4.85
93 94 2.114670 CCGTTGGGCTATGGTGCAG 61.115 63.158 0.00 0.00 34.04 4.41
94 95 2.045438 CCGTTGGGCTATGGTGCA 60.045 61.111 0.00 0.00 34.04 4.57
95 96 2.828549 CCCGTTGGGCTATGGTGC 60.829 66.667 0.00 0.00 35.35 5.01
96 97 0.106719 ATTCCCGTTGGGCTATGGTG 60.107 55.000 0.00 0.00 43.94 4.17
97 98 0.106719 CATTCCCGTTGGGCTATGGT 60.107 55.000 0.00 0.00 43.94 3.55
98 99 0.823356 CCATTCCCGTTGGGCTATGG 60.823 60.000 16.46 16.46 43.94 2.74
99 100 2.719376 CCATTCCCGTTGGGCTATG 58.281 57.895 0.00 3.73 43.94 2.23
105 106 2.362375 CCACCCCATTCCCGTTGG 60.362 66.667 0.00 0.00 0.00 3.77
106 107 1.677633 GACCACCCCATTCCCGTTG 60.678 63.158 0.00 0.00 0.00 4.10
107 108 2.761160 GACCACCCCATTCCCGTT 59.239 61.111 0.00 0.00 0.00 4.44
108 109 3.712907 CGACCACCCCATTCCCGT 61.713 66.667 0.00 0.00 0.00 5.28
109 110 2.360767 TACGACCACCCCATTCCCG 61.361 63.158 0.00 0.00 0.00 5.14
110 111 1.222661 GTACGACCACCCCATTCCC 59.777 63.158 0.00 0.00 0.00 3.97
111 112 1.222661 GGTACGACCACCCCATTCC 59.777 63.158 0.00 0.00 38.42 3.01
112 113 4.948257 GGTACGACCACCCCATTC 57.052 61.111 0.00 0.00 38.42 2.67
125 126 2.505557 CGACGCTCCGTTGGGTAC 60.506 66.667 0.00 0.00 41.37 3.34
126 127 2.981560 GACGACGCTCCGTTGGGTA 61.982 63.158 9.51 0.00 44.56 3.69
127 128 4.353437 GACGACGCTCCGTTGGGT 62.353 66.667 9.51 0.86 44.56 4.51
128 129 4.351938 TGACGACGCTCCGTTGGG 62.352 66.667 9.51 0.00 44.56 4.12
129 130 3.103911 GTGACGACGCTCCGTTGG 61.104 66.667 9.51 0.13 44.56 3.77
130 131 3.458579 CGTGACGACGCTCCGTTG 61.459 66.667 0.00 3.62 45.61 4.10
232 233 0.179124 GAGCGCTAAGACCACCTGAG 60.179 60.000 11.50 0.00 0.00 3.35
233 234 1.605058 GGAGCGCTAAGACCACCTGA 61.605 60.000 11.50 0.00 0.00 3.86
234 235 1.153549 GGAGCGCTAAGACCACCTG 60.154 63.158 11.50 0.00 0.00 4.00
235 236 0.978146 ATGGAGCGCTAAGACCACCT 60.978 55.000 16.96 0.67 35.19 4.00
237 238 0.872021 CGATGGAGCGCTAAGACCAC 60.872 60.000 16.96 10.44 35.19 4.16
238 239 1.035385 TCGATGGAGCGCTAAGACCA 61.035 55.000 16.94 16.94 36.83 4.02
239 240 0.102481 TTCGATGGAGCGCTAAGACC 59.898 55.000 11.50 8.15 0.00 3.85
240 241 2.055100 GATTCGATGGAGCGCTAAGAC 58.945 52.381 11.50 1.27 0.00 3.01
242 243 1.056103 CGATTCGATGGAGCGCTAAG 58.944 55.000 11.50 0.00 0.00 2.18
243 244 0.939577 GCGATTCGATGGAGCGCTAA 60.940 55.000 11.50 1.11 41.53 3.09
244 245 1.371758 GCGATTCGATGGAGCGCTA 60.372 57.895 11.50 0.00 41.53 4.26
257 258 0.737219 GCAGGAAGATTGCAGCGATT 59.263 50.000 0.00 0.00 41.17 3.34
267 268 0.391263 GAAACGACCGGCAGGAAGAT 60.391 55.000 10.86 0.00 41.02 2.40
274 275 1.518774 GATAGGGAAACGACCGGCA 59.481 57.895 0.00 0.00 0.00 5.69
415 421 1.418342 CGGGTTAGTCGCCATCAACG 61.418 60.000 0.00 0.00 0.00 4.10
456 462 3.064682 TGAAATAATGTGGCATTCGACGG 59.935 43.478 0.00 0.00 0.00 4.79
458 464 6.064846 AGATGAAATAATGTGGCATTCGAC 57.935 37.500 0.00 0.00 0.00 4.20
489 495 7.568349 TCAATCAGCAACTGAGTTAATATCCT 58.432 34.615 0.00 0.00 44.08 3.24
612 627 8.519526 ACCGTTTTATTTTATGCTGAGATTTGA 58.480 29.630 0.00 0.00 0.00 2.69
716 733 8.329203 AGCTTATTTCCAGCTAACTATATTGC 57.671 34.615 0.00 0.00 46.18 3.56
799 1015 6.135290 TGGCGGATTCAATTATCTTTGAAG 57.865 37.500 5.91 0.00 45.83 3.02
912 1129 6.552445 AGTTAGGCTCTCATATTGTGAAGT 57.448 37.500 0.00 0.00 36.14 3.01
1180 1410 3.905968 TCATGTACCCTGATAGTTCGGA 58.094 45.455 0.00 0.00 0.00 4.55
1261 1491 5.569428 GCCTGGAGGATGCTTTTGTTAATTT 60.569 40.000 0.00 0.00 37.39 1.82
1428 1658 0.925720 TCCTTTCATCCTGGGCCCAT 60.926 55.000 28.82 8.05 0.00 4.00
1512 1742 5.415415 CTAGCTTATCTGGCATGTCAAAC 57.585 43.478 0.00 0.00 0.00 2.93
1579 1809 6.988580 CAGAAAGAAGCTACACATCCATCATA 59.011 38.462 0.00 0.00 0.00 2.15
1786 2016 4.201910 CCGCGAACAATGGTTATCAAGATT 60.202 41.667 8.23 0.00 37.36 2.40
1787 2017 3.312421 CCGCGAACAATGGTTATCAAGAT 59.688 43.478 8.23 0.00 37.36 2.40
2052 2283 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2053 2284 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2054 2285 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2055 2286 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2056 2287 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2057 2288 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2058 2289 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2059 2290 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2060 2291 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2061 2292 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2062 2293 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2063 2294 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2064 2295 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2065 2296 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2066 2297 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2067 2298 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2078 2309 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2079 2310 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2080 2311 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2081 2312 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2082 2313 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2083 2314 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2084 2315 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2085 2316 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2086 2317 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2087 2318 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2088 2319 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2089 2320 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2090 2321 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2091 2322 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2092 2323 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2093 2324 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2094 2325 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2095 2326 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2096 2327 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2097 2328 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2098 2329 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2099 2330 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2100 2331 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2112 2343 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2113 2344 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2114 2345 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2115 2346 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2116 2347 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2117 2348 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2118 2349 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2119 2350 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2120 2351 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2121 2352 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2122 2353 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2123 2354 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2124 2355 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2125 2356 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2126 2357 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2127 2358 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2128 2359 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2129 2360 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2130 2361 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2131 2362 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2132 2363 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2133 2364 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2134 2365 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2135 2366 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2136 2367 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2137 2368 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2138 2369 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2148 2379 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2149 2380 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2150 2381 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2151 2382 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2152 2383 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2153 2384 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2154 2385 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2155 2386 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2156 2387 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
2157 2388 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2158 2389 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2159 2390 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2160 2391 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2161 2392 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2162 2393 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2163 2394 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2164 2395 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2165 2396 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2166 2397 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2178 2409 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2181 2412 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2182 2413 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2183 2414 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2184 2415 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2186 2417 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2187 2418 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2188 2419 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2189 2420 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2190 2421 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2191 2422 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
2192 2423 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
2193 2424 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
2194 2425 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
2215 2446 4.644685 GCACCTTAGATATCAGGGCAAAAA 59.355 41.667 12.48 0.00 34.02 1.94
2216 2447 4.207165 GCACCTTAGATATCAGGGCAAAA 58.793 43.478 12.48 0.00 34.02 2.44
2217 2448 3.201930 TGCACCTTAGATATCAGGGCAAA 59.798 43.478 16.29 2.84 35.00 3.68
2218 2449 2.777114 TGCACCTTAGATATCAGGGCAA 59.223 45.455 16.29 6.66 35.00 4.52
2219 2450 2.407562 TGCACCTTAGATATCAGGGCA 58.592 47.619 15.36 15.36 35.33 5.36
2220 2451 3.492102 TTGCACCTTAGATATCAGGGC 57.508 47.619 12.48 12.27 34.02 5.19
2221 2452 5.041191 AGTTTGCACCTTAGATATCAGGG 57.959 43.478 12.48 9.65 34.02 4.45
2222 2453 5.674525 TGAGTTTGCACCTTAGATATCAGG 58.325 41.667 5.32 6.52 36.10 3.86
2223 2454 5.236047 GCTGAGTTTGCACCTTAGATATCAG 59.764 44.000 5.32 0.00 34.88 2.90
2224 2455 5.104776 AGCTGAGTTTGCACCTTAGATATCA 60.105 40.000 5.32 0.00 0.00 2.15
2225 2456 5.236047 CAGCTGAGTTTGCACCTTAGATATC 59.764 44.000 8.42 0.00 0.00 1.63
2226 2457 5.104776 TCAGCTGAGTTTGCACCTTAGATAT 60.105 40.000 13.74 0.00 0.00 1.63
2227 2458 4.222810 TCAGCTGAGTTTGCACCTTAGATA 59.777 41.667 13.74 0.00 0.00 1.98
2228 2459 3.008375 TCAGCTGAGTTTGCACCTTAGAT 59.992 43.478 13.74 0.00 0.00 1.98
2229 2460 2.368548 TCAGCTGAGTTTGCACCTTAGA 59.631 45.455 13.74 0.00 0.00 2.10
2230 2461 2.771089 TCAGCTGAGTTTGCACCTTAG 58.229 47.619 13.74 0.00 0.00 2.18
2231 2462 2.928801 TCAGCTGAGTTTGCACCTTA 57.071 45.000 13.74 0.00 0.00 2.69
2232 2463 1.952296 CTTCAGCTGAGTTTGCACCTT 59.048 47.619 17.43 0.00 0.00 3.50
2233 2464 1.141657 TCTTCAGCTGAGTTTGCACCT 59.858 47.619 17.43 0.00 0.00 4.00
2234 2465 1.597742 TCTTCAGCTGAGTTTGCACC 58.402 50.000 17.43 0.00 0.00 5.01
2336 2567 3.011119 CGTCTAAGCTACTCCAGAGTGT 58.989 50.000 10.59 0.00 42.52 3.55
2498 2729 0.252330 TCCCAGTCGGTCACCCATTA 60.252 55.000 0.00 0.00 0.00 1.90
2499 2730 1.131303 TTCCCAGTCGGTCACCCATT 61.131 55.000 0.00 0.00 0.00 3.16
2625 2856 1.079405 CCTCTAACGCCTCGGCAAA 60.079 57.895 8.87 0.00 42.06 3.68
2626 2857 0.966875 TACCTCTAACGCCTCGGCAA 60.967 55.000 8.87 0.00 42.06 4.52
2627 2858 0.966875 TTACCTCTAACGCCTCGGCA 60.967 55.000 8.87 0.00 42.06 5.69
2632 2897 3.376546 CGTAGAAGTTACCTCTAACGCCT 59.623 47.826 0.00 0.00 37.85 5.52
3511 3776 0.988832 AGCTTTCCACCATACCGGAA 59.011 50.000 9.46 0.00 39.54 4.30
3924 4189 4.408821 GAGTGTGCCGCCCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
3952 4217 0.882927 GGGGCGCGAATGCAAGTATA 60.883 55.000 12.10 0.00 42.97 1.47
3953 4218 2.186826 GGGGCGCGAATGCAAGTAT 61.187 57.895 12.10 0.00 42.97 2.12
3954 4219 2.822255 GGGGCGCGAATGCAAGTA 60.822 61.111 12.10 0.00 42.97 2.24
3960 4225 3.814268 CAGTTGGGGGCGCGAATG 61.814 66.667 12.10 0.00 0.00 2.67
3967 4232 2.511545 GAATGCAAGCAGTTGGGGGC 62.512 60.000 0.00 0.00 33.87 5.80
3968 4233 1.593265 GAATGCAAGCAGTTGGGGG 59.407 57.895 0.00 0.00 33.87 5.40
3969 4234 1.213537 CGAATGCAAGCAGTTGGGG 59.786 57.895 0.00 0.00 33.87 4.96
3970 4235 1.444895 GCGAATGCAAGCAGTTGGG 60.445 57.895 11.23 0.00 42.15 4.12
3971 4236 1.798725 CGCGAATGCAAGCAGTTGG 60.799 57.895 0.00 1.73 42.97 3.77
3972 4237 2.430942 GCGCGAATGCAAGCAGTTG 61.431 57.895 12.10 5.43 42.97 3.16
3973 4238 2.126734 GCGCGAATGCAAGCAGTT 60.127 55.556 12.10 0.00 42.97 3.16
3974 4239 4.107051 GGCGCGAATGCAAGCAGT 62.107 61.111 12.10 0.00 42.97 4.40
3975 4240 4.842091 GGGCGCGAATGCAAGCAG 62.842 66.667 12.10 6.40 42.97 4.24
3991 4256 2.572209 TTAAGACAAAACCGAGGGGG 57.428 50.000 0.00 0.00 43.62 5.40
4131 4396 6.569127 TGGTGCAGAAAATATTACCCTCTA 57.431 37.500 0.00 0.00 0.00 2.43
4235 4500 7.132213 GGAATGGTTTATGAACGATACACATG 58.868 38.462 0.00 0.00 33.72 3.21
4267 4532 8.764287 GTTGACAAAAGAATTAATCCAGGTTTG 58.236 33.333 0.00 0.00 0.00 2.93
4293 4558 6.698008 TCAATGATTGCACCTGTAATAAGG 57.302 37.500 0.00 0.00 43.57 2.69
4435 4700 2.539142 CCGTGACCTAAGATCGTTCTCG 60.539 54.545 0.00 0.00 38.55 4.04
4688 4963 2.373169 GGCAGATGATCCTAATCCACCA 59.627 50.000 0.00 0.00 0.00 4.17
4740 5015 5.567037 AGCATATTACTGTGAATAGCCCA 57.433 39.130 0.00 0.00 0.00 5.36
4743 5018 8.012241 GCAAAGTAGCATATTACTGTGAATAGC 58.988 37.037 8.40 0.00 40.03 2.97
4784 5059 3.914426 AGTGTTGACTGTTGAGAAGGT 57.086 42.857 0.00 0.00 0.00 3.50
4835 5113 6.380095 TTTGCTGTTAAAACGACCTACAAT 57.620 33.333 0.00 0.00 0.00 2.71
4882 5160 4.349048 AGAGCCAAGCCAATGATGATACTA 59.651 41.667 0.00 0.00 0.00 1.82
4913 5191 1.234615 TGCGCTGTAACCTGAAAGCC 61.235 55.000 9.73 0.00 31.84 4.35
4977 5255 5.324409 AGAAAACCACCTGCATATTTCTGA 58.676 37.500 0.00 0.00 36.19 3.27
5008 5287 3.933155 GTGACATCTTCAGCATAACGG 57.067 47.619 0.00 0.00 33.71 4.44
5072 5351 1.141657 GGAGGCTGCCAGTGATTATGA 59.858 52.381 22.65 0.00 0.00 2.15
5100 5379 2.989840 CAGTACAGGAGAGAAGTTTGCG 59.010 50.000 0.00 0.00 0.00 4.85
5308 5587 0.328258 GGGCTTCAGGCAACCTCTTA 59.672 55.000 2.41 0.00 44.01 2.10
5413 5692 7.920682 GCCCACTTTGAATAATAACTGTATTGG 59.079 37.037 0.00 0.00 32.10 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.