Multiple sequence alignment - TraesCS6B01G247200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G247200 chr6B 100.000 6409 0 0 1 6409 439398533 439392125 0.000000e+00 11836.0
1 TraesCS6B01G247200 chr6B 90.058 171 12 3 6239 6409 606965115 606964950 3.890000e-52 217.0
2 TraesCS6B01G247200 chr6B 81.197 234 33 7 2738 2969 38003890 38004114 1.840000e-40 178.0
3 TraesCS6B01G247200 chr6B 82.036 167 16 10 2800 2966 49403894 49404046 5.210000e-26 130.0
4 TraesCS6B01G247200 chr6B 81.443 97 12 6 6311 6404 634913899 634913806 2.480000e-09 75.0
5 TraesCS6B01G247200 chr6D 95.453 2617 76 17 3651 6241 277666454 277663855 0.000000e+00 4133.0
6 TraesCS6B01G247200 chr6D 92.340 2846 100 31 6 2801 277669941 277667164 0.000000e+00 3940.0
7 TraesCS6B01G247200 chr6D 95.231 713 10 4 2883 3571 277667165 277666453 0.000000e+00 1107.0
8 TraesCS6B01G247200 chr6D 92.000 100 8 0 2788 2887 68082957 68082858 2.410000e-29 141.0
9 TraesCS6B01G247200 chr6A 94.153 1984 75 17 841 2801 400119975 400118010 0.000000e+00 2983.0
10 TraesCS6B01G247200 chr6A 96.510 1805 44 7 3651 5453 400117120 400115333 0.000000e+00 2966.0
11 TraesCS6B01G247200 chr6A 90.774 607 32 8 148 740 400120686 400120090 0.000000e+00 789.0
12 TraesCS6B01G247200 chr6A 91.858 479 23 6 5757 6234 400115301 400114838 0.000000e+00 654.0
13 TraesCS6B01G247200 chr6A 92.010 413 8 7 3183 3571 400117530 400117119 2.020000e-154 556.0
14 TraesCS6B01G247200 chr6A 97.627 295 6 1 2883 3177 400118011 400117718 7.420000e-139 505.0
15 TraesCS6B01G247200 chr6A 95.683 139 4 2 5 142 400121028 400120891 8.360000e-54 222.0
16 TraesCS6B01G247200 chr6A 89.474 171 14 2 6240 6409 615695456 615695289 5.030000e-51 213.0
17 TraesCS6B01G247200 chr6A 91.667 96 4 3 3560 3652 27342885 27342979 5.210000e-26 130.0
18 TraesCS6B01G247200 chr5D 90.683 161 13 2 991 1149 546657243 546657083 5.030000e-51 213.0
19 TraesCS6B01G247200 chr5D 91.262 103 7 2 2782 2884 475843299 475843399 8.660000e-29 139.0
20 TraesCS6B01G247200 chr5D 87.395 119 12 3 2768 2884 29115573 29115690 4.030000e-27 134.0
21 TraesCS6B01G247200 chr5D 94.000 50 3 0 5229 5278 549872703 549872752 6.890000e-10 76.8
22 TraesCS6B01G247200 chr5D 88.710 62 2 1 5235 5291 174010662 174010601 3.210000e-08 71.3
23 TraesCS6B01G247200 chr4A 91.139 158 12 2 991 1146 622281839 622281996 5.030000e-51 213.0
24 TraesCS6B01G247200 chr5B 90.062 161 14 2 990 1149 689858185 689858026 2.340000e-49 207.0
25 TraesCS6B01G247200 chr3D 91.912 136 10 1 6275 6409 570099081 570099216 8.480000e-44 189.0
26 TraesCS6B01G247200 chr3D 78.889 180 19 7 6239 6399 114085541 114085362 3.160000e-18 104.0
27 TraesCS6B01G247200 chr7D 91.852 135 10 1 6275 6409 563714576 563714443 3.050000e-43 187.0
28 TraesCS6B01G247200 chr7D 93.043 115 8 0 6295 6409 82854601 82854487 1.110000e-37 169.0
29 TraesCS6B01G247200 chr7D 92.473 93 5 1 3568 3658 618983557 618983465 1.450000e-26 132.0
30 TraesCS6B01G247200 chr7D 90.164 61 6 0 2741 2801 126482615 126482555 5.330000e-11 80.5
31 TraesCS6B01G247200 chr3B 86.905 168 18 4 6239 6404 706823309 706823474 1.100000e-42 185.0
32 TraesCS6B01G247200 chr3B 93.333 90 5 1 3569 3657 219724925 219725014 1.450000e-26 132.0
33 TraesCS6B01G247200 chr7A 86.826 167 15 5 6240 6399 510156553 510156719 5.110000e-41 180.0
34 TraesCS6B01G247200 chr7A 93.220 59 4 0 2742 2800 546421 546363 3.180000e-13 87.9
35 TraesCS6B01G247200 chr7A 92.727 55 3 1 5224 5278 192669397 192669450 1.920000e-10 78.7
36 TraesCS6B01G247200 chr7A 92.000 50 0 3 5703 5750 174687445 174687398 4.150000e-07 67.6
37 TraesCS6B01G247200 chr4D 91.045 134 10 2 6276 6409 425976558 425976427 5.110000e-41 180.0
38 TraesCS6B01G247200 chr5A 85.294 170 20 3 6239 6408 64373227 64373063 3.070000e-38 171.0
39 TraesCS6B01G247200 chr5A 85.276 163 21 2 6242 6404 300117687 300117528 1.430000e-36 165.0
40 TraesCS6B01G247200 chr5A 88.710 62 6 1 5700 5760 708525564 708525503 2.480000e-09 75.0
41 TraesCS6B01G247200 chr4B 95.699 93 4 0 2797 2889 211982150 211982058 4.000000e-32 150.0
42 TraesCS6B01G247200 chr2A 95.652 92 4 0 2796 2887 607600125 607600034 1.440000e-31 148.0
43 TraesCS6B01G247200 chr2A 91.429 105 5 3 2800 2900 57459121 57459017 2.410000e-29 141.0
44 TraesCS6B01G247200 chr7B 93.684 95 5 1 2798 2891 28056222 28056128 2.410000e-29 141.0
45 TraesCS6B01G247200 chr7B 95.455 88 2 1 3568 3653 440325690 440325603 8.660000e-29 139.0
46 TraesCS6B01G247200 chr7B 94.318 88 5 0 3568 3655 450564935 450565022 1.120000e-27 135.0
47 TraesCS6B01G247200 chr2D 95.455 88 2 1 3568 3653 638323079 638323166 8.660000e-29 139.0
48 TraesCS6B01G247200 chr2D 95.349 86 2 1 3570 3653 13622539 13622454 1.120000e-27 135.0
49 TraesCS6B01G247200 chr2D 92.157 51 4 0 5699 5749 194673905 194673855 8.910000e-09 73.1
50 TraesCS6B01G247200 chr1D 89.623 106 5 5 3569 3670 127266813 127266916 5.210000e-26 130.0
51 TraesCS6B01G247200 chr3A 88.679 106 7 4 3559 3660 726840680 726840784 2.430000e-24 124.0
52 TraesCS6B01G247200 chr3A 95.833 48 2 0 5231 5278 601398928 601398881 1.920000e-10 78.7
53 TraesCS6B01G247200 chr2B 94.643 56 2 1 5224 5279 494265182 494265128 1.140000e-12 86.1
54 TraesCS6B01G247200 chrUn 91.667 60 2 2 5235 5292 88110428 88110486 5.330000e-11 80.5
55 TraesCS6B01G247200 chr1A 86.111 72 3 3 5234 5301 137852087 137852019 3.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G247200 chr6B 439392125 439398533 6408 True 11836.000000 11836 100.000000 1 6409 1 chr6B.!!$R1 6408
1 TraesCS6B01G247200 chr6D 277663855 277669941 6086 True 3060.000000 4133 94.341333 6 6241 3 chr6D.!!$R2 6235
2 TraesCS6B01G247200 chr6A 400114838 400121028 6190 True 1239.285714 2983 94.087857 5 6234 7 chr6A.!!$R2 6229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 848 0.102481 TTCGATGGAGCGCTAAGACC 59.898 55.000 11.50 8.15 0.00 3.85 F
773 990 0.106719 CATTCCCGTTGGGCTATGGT 60.107 55.000 0.00 0.00 43.94 3.55 F
774 991 0.106719 ATTCCCGTTGGGCTATGGTG 60.107 55.000 0.00 0.00 43.94 4.17 F
905 1179 0.111253 CCAGGTTCCAGCTTCCTTGT 59.889 55.000 0.00 0.00 0.00 3.16 F
911 1185 0.178891 TCCAGCTTCCTTGTCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69 F
912 1186 0.251634 CCAGCTTCCTTGTCCTCCTC 59.748 60.000 0.00 0.00 0.00 3.71 F
1196 1478 1.226746 GCTGTAATTTCGATCGGGGG 58.773 55.000 16.41 0.00 0.00 5.40 F
1502 1786 1.623542 ATTGTCCGGACTACCTGCCC 61.624 60.000 33.39 6.04 0.00 5.36 F
2393 2684 2.028385 CACTGAGGTTACACAGGTACCC 60.028 54.545 8.74 0.00 39.29 3.69 F
3585 4086 0.106116 GACTACTCCCTCCGTCCCAT 60.106 60.000 0.00 0.00 0.00 4.00 F
3648 4149 0.104882 TACATTATGGGGCGGAGGGA 60.105 55.000 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 2022 0.389817 TTGTCGATCAACAGGAGGCG 60.390 55.000 0.00 0.00 0.00 5.52 R
1841 2129 1.147153 GATTCAGAGGGGAAGCCCG 59.853 63.158 0.00 0.00 46.66 6.13 R
2639 2934 2.435805 AGAGGAAACTGAGCACAGAACA 59.564 45.455 18.54 0.00 46.03 3.18 R
2876 3171 4.781087 TGTGGCAAGTAACTTATACTCCCT 59.219 41.667 0.00 0.00 0.00 4.20 R
2877 3172 5.093849 TGTGGCAAGTAACTTATACTCCC 57.906 43.478 0.00 0.00 0.00 4.30 R
2878 3173 7.443259 TTTTGTGGCAAGTAACTTATACTCC 57.557 36.000 0.00 0.00 0.00 3.85 R
3107 3402 0.107214 TTTGATAGCGGCCCCAGAAG 60.107 55.000 0.00 0.00 0.00 2.85 R
3260 3737 5.486526 AGCAGTTTGGAGAGAATTCACTAG 58.513 41.667 8.44 0.00 0.00 2.57 R
3629 4130 0.104882 TCCCTCCGCCCCATAATGTA 60.105 55.000 0.00 0.00 0.00 2.29 R
4475 4977 0.966179 TCTGCAGGACTACGCTTCAA 59.034 50.000 15.13 0.00 0.00 2.69 R
5625 6147 0.981183 ACGTCTTGGCAAGGGATACA 59.019 50.000 25.92 3.61 39.74 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 6.135290 TGGCGGATTCAATTATCTTTGAAG 57.865 37.500 5.91 0.00 45.83 3.02
154 355 8.329203 AGCTTATTTCCAGCTAACTATATTGC 57.671 34.615 0.00 0.00 46.18 3.56
258 461 8.519526 ACCGTTTTATTTTATGCTGAGATTTGA 58.480 29.630 0.00 0.00 0.00 2.69
381 593 7.568349 TCAATCAGCAACTGAGTTAATATCCT 58.432 34.615 0.00 0.00 44.08 3.24
412 624 6.064846 AGATGAAATAATGTGGCATTCGAC 57.935 37.500 0.00 0.00 0.00 4.20
414 626 3.064682 TGAAATAATGTGGCATTCGACGG 59.935 43.478 0.00 0.00 0.00 4.79
455 667 1.418342 CGGGTTAGTCGCCATCAACG 61.418 60.000 0.00 0.00 0.00 4.10
596 813 1.518774 GATAGGGAAACGACCGGCA 59.481 57.895 0.00 0.00 0.00 5.69
603 820 0.391263 GAAACGACCGGCAGGAAGAT 60.391 55.000 10.86 0.00 41.02 2.40
613 830 0.737219 GCAGGAAGATTGCAGCGATT 59.263 50.000 0.00 0.00 41.17 3.34
626 843 1.371758 GCGATTCGATGGAGCGCTA 60.372 57.895 11.50 0.00 41.53 4.26
628 845 1.056103 CGATTCGATGGAGCGCTAAG 58.944 55.000 11.50 0.00 0.00 2.18
629 846 1.335051 CGATTCGATGGAGCGCTAAGA 60.335 52.381 11.50 2.42 0.00 2.10
630 847 2.055100 GATTCGATGGAGCGCTAAGAC 58.945 52.381 11.50 1.27 0.00 3.01
631 848 0.102481 TTCGATGGAGCGCTAAGACC 59.898 55.000 11.50 8.15 0.00 3.85
635 852 0.978146 ATGGAGCGCTAAGACCACCT 60.978 55.000 16.96 0.67 35.19 4.00
636 853 1.153549 GGAGCGCTAAGACCACCTG 60.154 63.158 11.50 0.00 0.00 4.00
637 854 1.605058 GGAGCGCTAAGACCACCTGA 61.605 60.000 11.50 0.00 0.00 3.86
638 855 0.179124 GAGCGCTAAGACCACCTGAG 60.179 60.000 11.50 0.00 0.00 3.35
740 957 3.458579 CGTGACGACGCTCCGTTG 61.459 66.667 0.00 3.62 45.61 4.10
741 958 3.103911 GTGACGACGCTCCGTTGG 61.104 66.667 9.51 0.13 44.56 3.77
742 959 4.351938 TGACGACGCTCCGTTGGG 62.352 66.667 9.51 0.00 44.56 4.12
743 960 4.353437 GACGACGCTCCGTTGGGT 62.353 66.667 9.51 0.86 44.56 4.51
744 961 2.981560 GACGACGCTCCGTTGGGTA 61.982 63.158 9.51 0.00 44.56 3.69
745 962 2.505557 CGACGCTCCGTTGGGTAC 60.506 66.667 0.00 0.00 41.37 3.34
758 975 4.948257 GGTACGACCACCCCATTC 57.052 61.111 0.00 0.00 38.42 2.67
759 976 1.222661 GGTACGACCACCCCATTCC 59.777 63.158 0.00 0.00 38.42 3.01
760 977 1.222661 GTACGACCACCCCATTCCC 59.777 63.158 0.00 0.00 0.00 3.97
761 978 2.360767 TACGACCACCCCATTCCCG 61.361 63.158 0.00 0.00 0.00 5.14
762 979 3.712907 CGACCACCCCATTCCCGT 61.713 66.667 0.00 0.00 0.00 5.28
763 980 2.761160 GACCACCCCATTCCCGTT 59.239 61.111 0.00 0.00 0.00 4.44
764 981 1.677633 GACCACCCCATTCCCGTTG 60.678 63.158 0.00 0.00 0.00 4.10
765 982 2.362375 CCACCCCATTCCCGTTGG 60.362 66.667 0.00 0.00 0.00 3.77
771 988 2.719376 CCATTCCCGTTGGGCTATG 58.281 57.895 0.00 3.73 43.94 2.23
772 989 0.823356 CCATTCCCGTTGGGCTATGG 60.823 60.000 16.46 16.46 43.94 2.74
773 990 0.106719 CATTCCCGTTGGGCTATGGT 60.107 55.000 0.00 0.00 43.94 3.55
774 991 0.106719 ATTCCCGTTGGGCTATGGTG 60.107 55.000 0.00 0.00 43.94 4.17
775 992 2.828549 CCCGTTGGGCTATGGTGC 60.829 66.667 0.00 0.00 35.35 5.01
776 993 2.045438 CCGTTGGGCTATGGTGCA 60.045 61.111 0.00 0.00 34.04 4.57
837 1089 2.615493 GACAATCTGTCAACCGGATGGT 60.615 50.000 9.46 0.00 44.45 3.55
838 1090 4.720710 GACAATCTGTCAACCGGATGGTG 61.721 52.174 9.46 0.00 46.42 4.17
904 1178 0.610232 CCCAGGTTCCAGCTTCCTTG 60.610 60.000 0.00 0.00 0.00 3.61
905 1179 0.111253 CCAGGTTCCAGCTTCCTTGT 59.889 55.000 0.00 0.00 0.00 3.16
906 1180 1.528129 CAGGTTCCAGCTTCCTTGTC 58.472 55.000 0.00 0.00 0.00 3.18
908 1182 0.402121 GGTTCCAGCTTCCTTGTCCT 59.598 55.000 0.00 0.00 0.00 3.85
909 1183 1.611936 GGTTCCAGCTTCCTTGTCCTC 60.612 57.143 0.00 0.00 0.00 3.71
911 1185 0.178891 TCCAGCTTCCTTGTCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
912 1186 0.251634 CCAGCTTCCTTGTCCTCCTC 59.748 60.000 0.00 0.00 0.00 3.71
918 1200 2.726351 CCTTGTCCTCCTCCTCGCC 61.726 68.421 0.00 0.00 0.00 5.54
954 1236 2.787866 CCTCCTCCCCCTTCTCCA 59.212 66.667 0.00 0.00 0.00 3.86
973 1255 2.490902 CCAGGAACCAAAAACCCTAGCT 60.491 50.000 0.00 0.00 0.00 3.32
1023 1305 2.899339 GCCATCCGGAAGCAGCTC 60.899 66.667 21.49 0.00 0.00 4.09
1195 1477 1.867233 CTGCTGTAATTTCGATCGGGG 59.133 52.381 16.41 0.00 0.00 5.73
1196 1478 1.226746 GCTGTAATTTCGATCGGGGG 58.773 55.000 16.41 0.00 0.00 5.40
1349 1631 5.623264 TCTCGATTTTGTGCGTGTAATTTTG 59.377 36.000 0.00 0.00 0.00 2.44
1467 1751 3.385111 GTGTGAGGTGAGGGTAGAATAGG 59.615 52.174 0.00 0.00 0.00 2.57
1502 1786 1.623542 ATTGTCCGGACTACCTGCCC 61.624 60.000 33.39 6.04 0.00 5.36
1531 1816 9.432982 TTTATTTATACTGGGCTTGGATGATTT 57.567 29.630 0.00 0.00 0.00 2.17
1579 1864 4.921515 TGAACGACACAACTTAGCTACATC 59.078 41.667 0.00 0.00 0.00 3.06
1734 2022 6.349973 TCGTTGTATGAGATTTGAGATTGC 57.650 37.500 0.00 0.00 0.00 3.56
1796 2084 4.085357 TGTTATGGTGCAAGTTCAGAGT 57.915 40.909 0.00 0.00 0.00 3.24
1841 2129 7.012327 TGTGAAGCATTAGGTTTGTGATATAGC 59.988 37.037 0.00 0.00 35.19 2.97
1958 2249 8.732746 TTCTCTTATTAGGTCACCTTTAATGC 57.267 34.615 0.00 0.00 34.61 3.56
1997 2288 8.592105 TGAGGTTTGAATGCTTTATCTTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
2127 2418 2.475111 AGTGAAGCACATACACGTTTCG 59.525 45.455 0.00 0.00 39.19 3.46
2393 2684 2.028385 CACTGAGGTTACACAGGTACCC 60.028 54.545 8.74 0.00 39.29 3.69
2466 2757 3.636300 TGTGGAAACTGAATGGTGAAAGG 59.364 43.478 0.00 0.00 0.00 3.11
2739 3034 7.837863 ACTATGAAATTACTTCCTCTGTTCGA 58.162 34.615 0.00 0.00 32.53 3.71
2768 3063 4.618920 AGTCCCTCTCGTATTTTGTGTT 57.381 40.909 0.00 0.00 0.00 3.32
2808 3103 9.355916 AGATTTAATTAGCAAAATACTCCCTCC 57.644 33.333 0.00 0.00 0.00 4.30
2809 3104 7.562454 TTTAATTAGCAAAATACTCCCTCCG 57.438 36.000 0.00 0.00 0.00 4.63
2810 3105 4.772886 ATTAGCAAAATACTCCCTCCGT 57.227 40.909 0.00 0.00 0.00 4.69
2811 3106 5.881923 ATTAGCAAAATACTCCCTCCGTA 57.118 39.130 0.00 0.00 0.00 4.02
2812 3107 5.680594 TTAGCAAAATACTCCCTCCGTAA 57.319 39.130 0.00 0.00 0.00 3.18
2813 3108 4.563140 AGCAAAATACTCCCTCCGTAAA 57.437 40.909 0.00 0.00 0.00 2.01
2814 3109 4.259356 AGCAAAATACTCCCTCCGTAAAC 58.741 43.478 0.00 0.00 0.00 2.01
2815 3110 4.004982 GCAAAATACTCCCTCCGTAAACA 58.995 43.478 0.00 0.00 0.00 2.83
2816 3111 4.456566 GCAAAATACTCCCTCCGTAAACAA 59.543 41.667 0.00 0.00 0.00 2.83
2817 3112 5.048573 GCAAAATACTCCCTCCGTAAACAAA 60.049 40.000 0.00 0.00 0.00 2.83
2818 3113 6.349860 GCAAAATACTCCCTCCGTAAACAAAT 60.350 38.462 0.00 0.00 0.00 2.32
2819 3114 7.148205 GCAAAATACTCCCTCCGTAAACAAATA 60.148 37.037 0.00 0.00 0.00 1.40
2820 3115 8.899771 CAAAATACTCCCTCCGTAAACAAATAT 58.100 33.333 0.00 0.00 0.00 1.28
2823 3118 9.774413 AATACTCCCTCCGTAAACAAATATAAG 57.226 33.333 0.00 0.00 0.00 1.73
2824 3119 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
2825 3120 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
2826 3121 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
2827 3122 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
2828 3123 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
2829 3124 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
2830 3125 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
2831 3126 8.700722 TCCGTAAACAAATATAAGAGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
2832 3127 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
2833 3128 8.810427 CCGTAAACAAATATAAGAGCGTTTAGA 58.190 33.333 0.00 0.00 31.53 2.10
2838 3133 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
2869 3164 8.077836 AGTGATCTAAACGCTCTTATATTTGC 57.922 34.615 0.00 0.00 0.00 3.68
2870 3165 7.928706 AGTGATCTAAACGCTCTTATATTTGCT 59.071 33.333 0.00 0.00 0.00 3.91
2871 3166 8.552034 GTGATCTAAACGCTCTTATATTTGCTT 58.448 33.333 0.00 0.00 0.00 3.91
2872 3167 9.758651 TGATCTAAACGCTCTTATATTTGCTTA 57.241 29.630 0.00 0.00 0.00 3.09
2874 3169 8.936070 TCTAAACGCTCTTATATTTGCTTACA 57.064 30.769 0.00 0.00 0.00 2.41
2875 3170 9.031360 TCTAAACGCTCTTATATTTGCTTACAG 57.969 33.333 0.00 0.00 0.00 2.74
2876 3171 7.843490 AAACGCTCTTATATTTGCTTACAGA 57.157 32.000 0.00 0.00 0.00 3.41
2877 3172 7.470289 AACGCTCTTATATTTGCTTACAGAG 57.530 36.000 0.00 0.00 0.00 3.35
2878 3173 5.986135 ACGCTCTTATATTTGCTTACAGAGG 59.014 40.000 0.00 0.00 0.00 3.69
2879 3174 5.406780 CGCTCTTATATTTGCTTACAGAGGG 59.593 44.000 0.00 0.00 34.68 4.30
2880 3175 6.525629 GCTCTTATATTTGCTTACAGAGGGA 58.474 40.000 0.00 0.00 0.00 4.20
2881 3176 6.648725 GCTCTTATATTTGCTTACAGAGGGAG 59.351 42.308 0.00 0.00 0.00 4.30
3382 3859 5.106830 GGAACTAGGTGTGTTTCATTAACCG 60.107 44.000 0.00 0.00 35.81 4.44
3392 3893 7.274250 GTGTGTTTCATTAACCGTACTACTAGG 59.726 40.741 0.00 0.00 35.81 3.02
3569 4070 8.834465 CATTTAAATCTATTGTAGCAGCTGACT 58.166 33.333 20.43 16.42 0.00 3.41
3571 4072 8.873215 TTAAATCTATTGTAGCAGCTGACTAC 57.127 34.615 27.44 27.44 40.37 2.73
3572 4073 6.723298 AATCTATTGTAGCAGCTGACTACT 57.277 37.500 30.70 21.52 40.56 2.57
3573 4074 5.759506 TCTATTGTAGCAGCTGACTACTC 57.240 43.478 30.70 17.38 40.56 2.59
3574 4075 3.810310 ATTGTAGCAGCTGACTACTCC 57.190 47.619 30.70 16.90 40.56 3.85
3575 4076 1.475403 TGTAGCAGCTGACTACTCCC 58.525 55.000 30.70 16.66 40.56 4.30
3576 4077 1.006043 TGTAGCAGCTGACTACTCCCT 59.994 52.381 30.70 16.41 40.56 4.20
3577 4078 1.679153 GTAGCAGCTGACTACTCCCTC 59.321 57.143 27.13 10.93 37.59 4.30
3578 4079 0.686112 AGCAGCTGACTACTCCCTCC 60.686 60.000 20.43 0.00 0.00 4.30
3579 4080 2.010582 GCAGCTGACTACTCCCTCCG 62.011 65.000 20.43 0.00 0.00 4.63
3580 4081 0.681564 CAGCTGACTACTCCCTCCGT 60.682 60.000 8.42 0.00 0.00 4.69
3581 4082 0.394625 AGCTGACTACTCCCTCCGTC 60.395 60.000 0.00 0.00 0.00 4.79
3582 4083 1.385756 GCTGACTACTCCCTCCGTCC 61.386 65.000 0.00 0.00 0.00 4.79
3583 4084 0.752376 CTGACTACTCCCTCCGTCCC 60.752 65.000 0.00 0.00 0.00 4.46
3584 4085 1.305623 GACTACTCCCTCCGTCCCA 59.694 63.158 0.00 0.00 0.00 4.37
3585 4086 0.106116 GACTACTCCCTCCGTCCCAT 60.106 60.000 0.00 0.00 0.00 4.00
3586 4087 1.144503 GACTACTCCCTCCGTCCCATA 59.855 57.143 0.00 0.00 0.00 2.74
3587 4088 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3588 4089 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3589 4090 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3590 4091 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3591 4092 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3592 4093 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3593 4094 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3594 4095 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3595 4096 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
3596 4097 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
3597 4098 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
3598 4099 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
3599 4100 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
3600 4101 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
3601 4102 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
3629 4130 6.388435 ACTAGTCTAGTGTCAAAACGTCTT 57.612 37.500 11.88 0.00 37.69 3.01
3630 4131 7.502120 ACTAGTCTAGTGTCAAAACGTCTTA 57.498 36.000 11.88 0.00 37.69 2.10
3631 4132 7.358830 ACTAGTCTAGTGTCAAAACGTCTTAC 58.641 38.462 11.88 0.00 37.69 2.34
3632 4133 6.140303 AGTCTAGTGTCAAAACGTCTTACA 57.860 37.500 0.00 0.00 0.00 2.41
3633 4134 6.746120 AGTCTAGTGTCAAAACGTCTTACAT 58.254 36.000 0.00 0.00 0.00 2.29
3634 4135 7.208080 AGTCTAGTGTCAAAACGTCTTACATT 58.792 34.615 0.00 0.00 0.00 2.71
3635 4136 8.355169 AGTCTAGTGTCAAAACGTCTTACATTA 58.645 33.333 0.00 0.00 0.00 1.90
3636 4137 9.136952 GTCTAGTGTCAAAACGTCTTACATTAT 57.863 33.333 0.00 0.00 0.00 1.28
3637 4138 9.135843 TCTAGTGTCAAAACGTCTTACATTATG 57.864 33.333 0.00 0.00 0.00 1.90
3638 4139 7.129109 AGTGTCAAAACGTCTTACATTATGG 57.871 36.000 0.00 0.00 0.00 2.74
3639 4140 6.148811 AGTGTCAAAACGTCTTACATTATGGG 59.851 38.462 0.00 0.00 0.00 4.00
3640 4141 5.413213 TGTCAAAACGTCTTACATTATGGGG 59.587 40.000 0.00 0.00 0.00 4.96
3641 4142 4.396790 TCAAAACGTCTTACATTATGGGGC 59.603 41.667 0.00 0.00 0.00 5.80
3642 4143 2.234300 ACGTCTTACATTATGGGGCG 57.766 50.000 0.00 2.66 0.00 6.13
3643 4144 1.202604 ACGTCTTACATTATGGGGCGG 60.203 52.381 11.76 0.00 0.00 6.13
3644 4145 1.069513 CGTCTTACATTATGGGGCGGA 59.930 52.381 0.00 0.00 0.00 5.54
3645 4146 2.767505 GTCTTACATTATGGGGCGGAG 58.232 52.381 0.00 0.00 0.00 4.63
3646 4147 1.697432 TCTTACATTATGGGGCGGAGG 59.303 52.381 0.00 0.00 0.00 4.30
3647 4148 0.768622 TTACATTATGGGGCGGAGGG 59.231 55.000 0.00 0.00 0.00 4.30
3648 4149 0.104882 TACATTATGGGGCGGAGGGA 60.105 55.000 0.00 0.00 0.00 4.20
3649 4150 1.376466 CATTATGGGGCGGAGGGAG 59.624 63.158 0.00 0.00 0.00 4.30
3697 4198 5.161358 GCTTTAGTTGCCAAAGTACCATTC 58.839 41.667 0.00 0.00 35.78 2.67
3775 4276 4.761739 CCTGTTCCTGACTCTGCAAAAATA 59.238 41.667 0.00 0.00 0.00 1.40
3878 4379 6.064717 GCATGGAGACCTACTTATTGGATTT 58.935 40.000 0.00 0.00 0.00 2.17
3904 4405 4.108501 TGTGGTAGGACTACTCTTGTCA 57.891 45.455 9.16 0.00 36.26 3.58
4071 4572 5.968254 TGAGCGTGTATGACAGGTAAATTA 58.032 37.500 1.74 0.00 36.45 1.40
4103 4604 3.431415 GCTTAACCAGGAATTTCCACCT 58.569 45.455 17.57 2.01 39.61 4.00
4248 4750 9.072294 GCTAAAGAATGTGCGTGTTTATTTATT 57.928 29.630 0.00 0.00 0.00 1.40
4314 4816 9.303537 GGTTTAATGTAACTTGCAAACTTGTTA 57.696 29.630 0.00 2.68 0.00 2.41
4349 4851 7.279615 TGTTTATAGCTATGCTCTTGGCTAAA 58.720 34.615 16.77 2.01 40.44 1.85
4428 4930 7.732025 TCCATATGGGTTATATGCTAATACGG 58.268 38.462 21.78 0.00 44.80 4.02
4611 5113 1.972872 AAGACTGGTGTTGCTTCTGG 58.027 50.000 0.00 0.00 0.00 3.86
4721 5223 5.350091 GCTTTAAAGTCTCCTAACAGAGCAG 59.650 44.000 16.38 0.00 33.66 4.24
4793 5296 2.376518 TCCAAGGAAAGGAGCACAGAAT 59.623 45.455 0.00 0.00 0.00 2.40
4914 5417 7.060383 ACCATGACAGAGAAAGTAGATATGG 57.940 40.000 0.00 0.00 37.83 2.74
5119 5622 8.556213 TTACTAGACAAAAACAAGTCAACTGT 57.444 30.769 0.00 0.00 37.23 3.55
5379 5901 8.362639 ACTCATGAAATGCAACTGACTTATTTT 58.637 29.630 0.00 0.00 46.21 1.82
5435 5957 1.139654 CACTAGATGCAGGCAGGCTTA 59.860 52.381 0.00 0.00 34.04 3.09
5455 5977 6.261158 GGCTTACATTAGATTTTCTGAGGGTC 59.739 42.308 0.00 0.00 0.00 4.46
5555 6077 4.229582 TGCATCTTCCTTTACCCCATAACT 59.770 41.667 0.00 0.00 0.00 2.24
5573 6095 7.655732 CCCATAACTCATGAACGTGATATGTTA 59.344 37.037 0.00 0.00 36.69 2.41
5606 6128 5.381757 TCTGTTATGGCTTTAACCAGTTGT 58.618 37.500 7.96 0.00 44.71 3.32
5625 6147 7.174946 CCAGTTGTCAACCTTATGTACTTCATT 59.825 37.037 12.17 0.00 37.91 2.57
5640 6162 4.019174 ACTTCATTGTATCCCTTGCCAAG 58.981 43.478 0.00 0.00 0.00 3.61
5669 6191 7.391833 GTCCCTGTTGATTTCTCAAGTTATTCT 59.608 37.037 0.00 0.00 41.96 2.40
5670 6192 7.944554 TCCCTGTTGATTTCTCAAGTTATTCTT 59.055 33.333 0.00 0.00 41.96 2.52
5687 6209 9.007901 AGTTATTCTTTGTCTTGAATTGAGAGG 57.992 33.333 0.00 0.00 35.01 3.69
5689 6211 4.655963 TCTTTGTCTTGAATTGAGAGGGG 58.344 43.478 0.00 0.00 0.00 4.79
5715 6238 2.825861 TGACCCTGAAACCGTAGAAC 57.174 50.000 0.00 0.00 0.00 3.01
5884 6410 1.050204 TTGCTGCTTTGGATGGCTTT 58.950 45.000 0.00 0.00 0.00 3.51
5886 6412 0.604578 GCTGCTTTGGATGGCTTTGA 59.395 50.000 0.00 0.00 0.00 2.69
5896 6423 6.423776 TTGGATGGCTTTGATTTTTCTCTT 57.576 33.333 0.00 0.00 0.00 2.85
5898 6425 5.047092 TGGATGGCTTTGATTTTTCTCTTCC 60.047 40.000 0.00 0.00 0.00 3.46
5906 6433 7.043125 GCTTTGATTTTTCTCTTCCACAGAAAC 60.043 37.037 0.00 0.00 39.15 2.78
5910 6437 7.503566 TGATTTTTCTCTTCCACAGAAACATCT 59.496 33.333 16.50 0.00 42.48 2.90
5965 6493 1.891150 ACTGCCTGCCTGAAGATTTTG 59.109 47.619 0.00 0.00 0.00 2.44
6004 6532 2.247111 TCAAATACCCCAGCATCCCATT 59.753 45.455 0.00 0.00 0.00 3.16
6024 6552 9.645128 TCCCATTATCACAAATTCACAATATCT 57.355 29.630 0.00 0.00 0.00 1.98
6112 6640 9.685276 CTCTATTTTTGGTGGGCATGATATATA 57.315 33.333 0.00 0.00 0.00 0.86
6135 6663 0.678048 CCTAGCACCTGAGGGCAAAC 60.678 60.000 13.22 0.00 35.63 2.93
6143 6671 0.673644 CTGAGGGCAAACGGGTAGTG 60.674 60.000 0.00 0.00 0.00 2.74
6183 6711 3.403038 AGTTTCTTCCACCTTGTCATCG 58.597 45.455 0.00 0.00 0.00 3.84
6194 6722 4.062991 ACCTTGTCATCGTAAAGAACACC 58.937 43.478 0.00 0.00 0.00 4.16
6234 6762 9.220767 GTACTGATTTTCTGTTCAATAGGTTCT 57.779 33.333 0.00 0.00 31.00 3.01
6238 6766 8.567948 TGATTTTCTGTTCAATAGGTTCTTGTC 58.432 33.333 0.00 0.00 0.00 3.18
6241 6769 5.607477 TCTGTTCAATAGGTTCTTGTCGTT 58.393 37.500 0.00 0.00 0.00 3.85
6242 6770 6.053005 TCTGTTCAATAGGTTCTTGTCGTTT 58.947 36.000 0.00 0.00 0.00 3.60
6243 6771 6.540914 TCTGTTCAATAGGTTCTTGTCGTTTT 59.459 34.615 0.00 0.00 0.00 2.43
6244 6772 6.491394 TGTTCAATAGGTTCTTGTCGTTTTG 58.509 36.000 0.00 0.00 0.00 2.44
6245 6773 6.316640 TGTTCAATAGGTTCTTGTCGTTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
6246 6774 7.012894 TGTTCAATAGGTTCTTGTCGTTTTGAT 59.987 33.333 0.00 0.00 0.00 2.57
6247 6775 6.898041 TCAATAGGTTCTTGTCGTTTTGATG 58.102 36.000 0.00 0.00 0.00 3.07
6248 6776 3.626028 AGGTTCTTGTCGTTTTGATGC 57.374 42.857 0.00 0.00 0.00 3.91
6249 6777 2.293399 AGGTTCTTGTCGTTTTGATGCC 59.707 45.455 0.00 0.00 0.00 4.40
6250 6778 2.607038 GGTTCTTGTCGTTTTGATGCCC 60.607 50.000 0.00 0.00 0.00 5.36
6251 6779 1.974265 TCTTGTCGTTTTGATGCCCA 58.026 45.000 0.00 0.00 0.00 5.36
6252 6780 1.879380 TCTTGTCGTTTTGATGCCCAG 59.121 47.619 0.00 0.00 0.00 4.45
6253 6781 1.879380 CTTGTCGTTTTGATGCCCAGA 59.121 47.619 0.00 0.00 0.00 3.86
6254 6782 1.234821 TGTCGTTTTGATGCCCAGAC 58.765 50.000 0.00 0.00 0.00 3.51
6255 6783 1.202758 TGTCGTTTTGATGCCCAGACT 60.203 47.619 0.00 0.00 0.00 3.24
6256 6784 1.464997 GTCGTTTTGATGCCCAGACTC 59.535 52.381 0.00 0.00 0.00 3.36
6257 6785 1.071542 TCGTTTTGATGCCCAGACTCA 59.928 47.619 0.00 0.00 0.00 3.41
6258 6786 2.086869 CGTTTTGATGCCCAGACTCAT 58.913 47.619 0.00 0.00 0.00 2.90
6259 6787 2.096496 CGTTTTGATGCCCAGACTCATC 59.904 50.000 0.00 0.00 39.49 2.92
6260 6788 3.350833 GTTTTGATGCCCAGACTCATCT 58.649 45.455 4.73 0.00 39.69 2.90
6267 6795 4.509756 CAGACTCATCTGCACCCG 57.490 61.111 0.00 0.00 45.83 5.28
6268 6796 1.812922 CAGACTCATCTGCACCCGC 60.813 63.158 0.00 0.00 45.83 6.13
6269 6797 2.512515 GACTCATCTGCACCCGCC 60.513 66.667 0.00 0.00 37.32 6.13
6270 6798 4.101448 ACTCATCTGCACCCGCCC 62.101 66.667 0.00 0.00 37.32 6.13
6271 6799 4.100084 CTCATCTGCACCCGCCCA 62.100 66.667 0.00 0.00 37.32 5.36
6272 6800 4.100084 TCATCTGCACCCGCCCAG 62.100 66.667 0.00 0.00 37.32 4.45
6276 6804 4.659172 CTGCACCCGCCCAGGAAA 62.659 66.667 0.00 0.00 45.00 3.13
6277 6805 4.211330 TGCACCCGCCCAGGAAAA 62.211 61.111 0.00 0.00 45.00 2.29
6278 6806 2.915137 GCACCCGCCCAGGAAAAA 60.915 61.111 0.00 0.00 45.00 1.94
6326 6854 8.755696 TTTTTGCATGGTAGACAATTTATCAC 57.244 30.769 0.00 0.00 0.00 3.06
6327 6855 5.733226 TGCATGGTAGACAATTTATCACG 57.267 39.130 0.00 0.00 0.00 4.35
6328 6856 5.182487 TGCATGGTAGACAATTTATCACGT 58.818 37.500 0.00 0.00 0.00 4.49
6329 6857 5.064579 TGCATGGTAGACAATTTATCACGTG 59.935 40.000 9.94 9.94 0.00 4.49
6330 6858 5.293324 GCATGGTAGACAATTTATCACGTGA 59.707 40.000 22.48 22.48 0.00 4.35
6331 6859 6.510157 GCATGGTAGACAATTTATCACGTGAG 60.510 42.308 24.41 11.37 0.00 3.51
6332 6860 5.416083 TGGTAGACAATTTATCACGTGAGG 58.584 41.667 24.41 10.79 0.00 3.86
6333 6861 5.046878 TGGTAGACAATTTATCACGTGAGGT 60.047 40.000 24.41 10.73 0.00 3.85
6334 6862 5.519206 GGTAGACAATTTATCACGTGAGGTC 59.481 44.000 24.41 20.27 0.00 3.85
6335 6863 4.504858 AGACAATTTATCACGTGAGGTCC 58.495 43.478 24.41 7.32 0.00 4.46
6336 6864 3.259064 ACAATTTATCACGTGAGGTCCG 58.741 45.455 24.41 12.44 0.00 4.79
6337 6865 1.935933 ATTTATCACGTGAGGTCCGC 58.064 50.000 24.41 0.00 0.00 5.54
6338 6866 0.892755 TTTATCACGTGAGGTCCGCT 59.107 50.000 24.41 7.61 0.00 5.52
6339 6867 0.454600 TTATCACGTGAGGTCCGCTC 59.545 55.000 24.41 0.00 0.00 5.03
6340 6868 0.678684 TATCACGTGAGGTCCGCTCA 60.679 55.000 24.41 0.00 0.00 4.26
6341 6869 1.532604 ATCACGTGAGGTCCGCTCAA 61.533 55.000 24.41 0.00 32.15 3.02
6342 6870 1.300620 CACGTGAGGTCCGCTCAAA 60.301 57.895 10.90 0.00 32.15 2.69
6343 6871 0.878523 CACGTGAGGTCCGCTCAAAA 60.879 55.000 10.90 0.00 32.15 2.44
6344 6872 0.034896 ACGTGAGGTCCGCTCAAAAT 59.965 50.000 0.00 0.00 32.15 1.82
6345 6873 1.156736 CGTGAGGTCCGCTCAAAATT 58.843 50.000 0.00 0.00 32.15 1.82
6346 6874 1.535462 CGTGAGGTCCGCTCAAAATTT 59.465 47.619 0.00 0.00 32.15 1.82
6347 6875 2.031157 CGTGAGGTCCGCTCAAAATTTT 60.031 45.455 0.00 0.00 32.15 1.82
6348 6876 3.187637 CGTGAGGTCCGCTCAAAATTTTA 59.812 43.478 2.44 0.00 32.15 1.52
6349 6877 4.669197 CGTGAGGTCCGCTCAAAATTTTAG 60.669 45.833 2.44 3.51 32.15 1.85
6350 6878 4.454504 GTGAGGTCCGCTCAAAATTTTAGA 59.545 41.667 2.44 3.38 32.15 2.10
6351 6879 4.695455 TGAGGTCCGCTCAAAATTTTAGAG 59.305 41.667 18.36 18.36 0.00 2.43
6362 6890 8.822652 CTCAAAATTTTAGAGCATTTGGAGTT 57.177 30.769 2.44 0.00 36.36 3.01
6363 6891 8.816640 TCAAAATTTTAGAGCATTTGGAGTTC 57.183 30.769 2.44 0.00 33.08 3.01
6364 6892 8.641541 TCAAAATTTTAGAGCATTTGGAGTTCT 58.358 29.630 2.44 0.00 33.08 3.01
6365 6893 8.706035 CAAAATTTTAGAGCATTTGGAGTTCTG 58.294 33.333 2.44 0.00 0.00 3.02
6366 6894 7.765695 AATTTTAGAGCATTTGGAGTTCTGA 57.234 32.000 0.00 0.00 0.00 3.27
6367 6895 6.808008 TTTTAGAGCATTTGGAGTTCTGAG 57.192 37.500 0.00 0.00 0.00 3.35
6368 6896 2.709213 AGAGCATTTGGAGTTCTGAGC 58.291 47.619 0.00 0.00 0.00 4.26
6369 6897 2.039480 AGAGCATTTGGAGTTCTGAGCA 59.961 45.455 0.00 0.00 0.00 4.26
6370 6898 2.419324 GAGCATTTGGAGTTCTGAGCAG 59.581 50.000 0.00 0.00 0.00 4.24
6371 6899 1.135460 GCATTTGGAGTTCTGAGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
6372 6900 2.434428 CATTTGGAGTTCTGAGCAGCT 58.566 47.619 0.00 0.00 0.00 4.24
6373 6901 2.175878 TTTGGAGTTCTGAGCAGCTC 57.824 50.000 16.21 16.21 0.00 4.09
6374 6902 1.346062 TTGGAGTTCTGAGCAGCTCT 58.654 50.000 23.15 2.04 0.00 4.09
6375 6903 1.346062 TGGAGTTCTGAGCAGCTCTT 58.654 50.000 23.15 4.05 0.00 2.85
6376 6904 2.529632 TGGAGTTCTGAGCAGCTCTTA 58.470 47.619 23.15 8.48 0.00 2.10
6377 6905 2.495270 TGGAGTTCTGAGCAGCTCTTAG 59.505 50.000 23.15 13.18 0.00 2.18
6378 6906 2.539476 GAGTTCTGAGCAGCTCTTAGC 58.461 52.381 23.15 12.61 42.84 3.09
6379 6907 1.898472 AGTTCTGAGCAGCTCTTAGCA 59.102 47.619 23.15 0.87 45.56 3.49
6380 6908 2.301296 AGTTCTGAGCAGCTCTTAGCAA 59.699 45.455 23.15 6.06 45.56 3.91
6381 6909 3.070018 GTTCTGAGCAGCTCTTAGCAAA 58.930 45.455 23.15 5.91 45.56 3.68
6382 6910 3.407424 TCTGAGCAGCTCTTAGCAAAA 57.593 42.857 23.15 0.00 45.56 2.44
6383 6911 3.743521 TCTGAGCAGCTCTTAGCAAAAA 58.256 40.909 23.15 0.00 45.56 1.94
6405 6933 8.702163 AAAAAGACAAATCGAGTCAAAACAAT 57.298 26.923 6.13 0.00 38.46 2.71
6406 6934 7.684062 AAAGACAAATCGAGTCAAAACAATG 57.316 32.000 6.13 0.00 38.46 2.82
6407 6935 5.215160 AGACAAATCGAGTCAAAACAATGC 58.785 37.500 6.13 0.00 38.46 3.56
6408 6936 4.930963 ACAAATCGAGTCAAAACAATGCA 58.069 34.783 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.313519 TCTTAGATTGCATTAGGGTCAACT 57.686 37.500 0.00 0.00 0.00 3.16
1 2 6.205658 GGATCTTAGATTGCATTAGGGTCAAC 59.794 42.308 0.00 0.00 0.00 3.18
2 3 6.101734 AGGATCTTAGATTGCATTAGGGTCAA 59.898 38.462 0.00 0.00 0.00 3.18
3 4 5.608437 AGGATCTTAGATTGCATTAGGGTCA 59.392 40.000 0.00 0.00 0.00 4.02
71 73 0.321671 TAGGTTCTGTGCTGCACTCC 59.678 55.000 30.43 24.39 35.11 3.85
154 355 6.105333 TCCCAAGAAAAACATTCTGTTGTTG 58.895 36.000 0.30 0.71 37.88 3.33
283 495 6.583806 CGTAGTACTGTAGTTGGAATTTCGTT 59.416 38.462 5.39 0.00 0.00 3.85
381 593 6.152492 TGCCACATTATTTCATCTACTTTGCA 59.848 34.615 0.00 0.00 0.00 4.08
412 624 3.795101 CGGCTAATGTAGTGTTAAGACCG 59.205 47.826 0.00 0.00 0.00 4.79
414 626 4.498323 CGTCGGCTAATGTAGTGTTAAGAC 59.502 45.833 0.00 0.00 0.00 3.01
455 667 4.021925 ACGGAGGCTTCTGTGGGC 62.022 66.667 9.89 0.00 41.40 5.36
511 723 1.486310 CCTCTGATTTCCGGTGGATCA 59.514 52.381 0.00 8.99 37.04 2.92
577 794 1.590792 GCCGGTCGTTTCCCTATCG 60.591 63.158 1.90 0.00 0.00 2.92
596 813 1.134699 TCGAATCGCTGCAATCTTCCT 60.135 47.619 0.00 0.00 0.00 3.36
603 820 1.431488 GCTCCATCGAATCGCTGCAA 61.431 55.000 0.44 0.00 0.00 4.08
613 830 1.035385 TGGTCTTAGCGCTCCATCGA 61.035 55.000 16.34 1.00 0.00 3.59
626 843 1.967066 CTCACTCACTCAGGTGGTCTT 59.033 52.381 0.00 0.00 43.17 3.01
628 845 0.037790 GCTCACTCACTCAGGTGGTC 60.038 60.000 0.00 0.00 43.17 4.02
629 846 1.810606 CGCTCACTCACTCAGGTGGT 61.811 60.000 0.00 0.00 43.17 4.16
630 847 1.080230 CGCTCACTCACTCAGGTGG 60.080 63.158 0.00 0.00 43.17 4.61
631 848 1.080230 CCGCTCACTCACTCAGGTG 60.080 63.158 0.00 0.00 44.23 4.00
635 852 1.590610 GCTCTCCGCTCACTCACTCA 61.591 60.000 0.00 0.00 35.14 3.41
636 853 1.138671 GCTCTCCGCTCACTCACTC 59.861 63.158 0.00 0.00 35.14 3.51
637 854 2.347322 GGCTCTCCGCTCACTCACT 61.347 63.158 0.00 0.00 39.13 3.41
638 855 2.183046 GGCTCTCCGCTCACTCAC 59.817 66.667 0.00 0.00 39.13 3.51
687 904 1.000896 CCCGAGTCCCCAATTGCTT 60.001 57.895 0.00 0.00 0.00 3.91
741 958 1.222661 GGAATGGGGTGGTCGTACC 59.777 63.158 0.00 0.00 40.10 3.34
742 959 1.222661 GGGAATGGGGTGGTCGTAC 59.777 63.158 0.00 0.00 0.00 3.67
743 960 2.360767 CGGGAATGGGGTGGTCGTA 61.361 63.158 0.00 0.00 0.00 3.43
744 961 3.712907 CGGGAATGGGGTGGTCGT 61.713 66.667 0.00 0.00 0.00 4.34
745 962 3.262448 AACGGGAATGGGGTGGTCG 62.262 63.158 0.00 0.00 0.00 4.79
746 963 1.677633 CAACGGGAATGGGGTGGTC 60.678 63.158 0.00 0.00 0.00 4.02
747 964 2.438795 CAACGGGAATGGGGTGGT 59.561 61.111 0.00 0.00 0.00 4.16
748 965 2.362375 CCAACGGGAATGGGGTGG 60.362 66.667 0.00 0.00 35.59 4.61
759 976 2.045438 TGCACCATAGCCCAACGG 60.045 61.111 0.00 0.00 0.00 4.44
760 977 2.114670 CCTGCACCATAGCCCAACG 61.115 63.158 0.00 0.00 0.00 4.10
761 978 1.754234 CCCTGCACCATAGCCCAAC 60.754 63.158 0.00 0.00 0.00 3.77
762 979 2.682846 CCCTGCACCATAGCCCAA 59.317 61.111 0.00 0.00 0.00 4.12
763 980 4.127744 GCCCTGCACCATAGCCCA 62.128 66.667 0.00 0.00 0.00 5.36
764 981 4.902645 GGCCCTGCACCATAGCCC 62.903 72.222 0.00 0.00 37.66 5.19
796 1020 1.743995 ACACGGTCCAAATAGGCGC 60.744 57.895 0.00 0.00 37.29 6.53
799 1023 1.002659 TGTCCACACGGTCCAAATAGG 59.997 52.381 0.00 0.00 39.47 2.57
841 1093 0.309612 CGGAAAAAGGACCAACGGTG 59.690 55.000 0.00 0.00 35.25 4.94
842 1094 0.820482 CCGGAAAAAGGACCAACGGT 60.820 55.000 0.00 0.00 39.44 4.83
843 1095 1.953772 CCGGAAAAAGGACCAACGG 59.046 57.895 0.00 0.00 0.00 4.44
844 1096 1.284715 GCCGGAAAAAGGACCAACG 59.715 57.895 5.05 0.00 0.00 4.10
846 1098 1.899534 CCGCCGGAAAAAGGACCAA 60.900 57.895 5.05 0.00 0.00 3.67
847 1099 2.281900 CCGCCGGAAAAAGGACCA 60.282 61.111 5.05 0.00 0.00 4.02
848 1100 3.744719 GCCGCCGGAAAAAGGACC 61.745 66.667 7.68 0.00 0.00 4.46
904 1178 1.758514 TGATGGCGAGGAGGAGGAC 60.759 63.158 0.00 0.00 0.00 3.85
905 1179 1.758514 GTGATGGCGAGGAGGAGGA 60.759 63.158 0.00 0.00 0.00 3.71
906 1180 2.818132 GTGATGGCGAGGAGGAGG 59.182 66.667 0.00 0.00 0.00 4.30
908 1182 3.838271 GCGTGATGGCGAGGAGGA 61.838 66.667 0.00 0.00 0.00 3.71
909 1183 4.899239 GGCGTGATGGCGAGGAGG 62.899 72.222 0.00 0.00 0.00 4.30
918 1200 1.497278 CTGTTTCGGTGGCGTGATG 59.503 57.895 0.00 0.00 0.00 3.07
954 1236 4.508584 CCTTAGCTAGGGTTTTTGGTTCCT 60.509 45.833 13.71 0.00 40.67 3.36
1198 1480 3.902086 GAGCCGGACCGAGCCTAC 61.902 72.222 17.49 8.01 0.00 3.18
1209 1491 1.299541 AAAACATATCAGCGAGCCGG 58.700 50.000 0.00 0.00 0.00 6.13
1329 1611 4.151512 CCCCAAAATTACACGCACAAAATC 59.848 41.667 0.00 0.00 0.00 2.17
1349 1631 1.613437 CAAATCCGTCCATATTGCCCC 59.387 52.381 0.00 0.00 0.00 5.80
1467 1751 3.255888 GGACAATCAAAAGTCCCTCCAAC 59.744 47.826 0.00 0.00 46.79 3.77
1502 1786 8.912988 TCATCCAAGCCCAGTATAAATAAAAAG 58.087 33.333 0.00 0.00 0.00 2.27
1531 1816 4.103627 ACTGCATGATCCATGACTCCATAA 59.896 41.667 10.77 0.00 43.81 1.90
1579 1864 7.281774 ATGTAGGTCATAATCTTGACAAGCAAG 59.718 37.037 10.50 0.00 46.32 4.01
1652 1940 3.213506 ACACACATTGTTCTTAGCAGCA 58.786 40.909 0.00 0.00 33.09 4.41
1653 1941 3.904136 ACACACATTGTTCTTAGCAGC 57.096 42.857 0.00 0.00 33.09 5.25
1695 1983 2.051345 GAAACAACGCACGCCCTG 60.051 61.111 0.00 0.00 0.00 4.45
1734 2022 0.389817 TTGTCGATCAACAGGAGGCG 60.390 55.000 0.00 0.00 0.00 5.52
1796 2084 6.507958 TCACAGTTCATTGTTGTCTTTTGA 57.492 33.333 0.00 0.00 0.00 2.69
1841 2129 1.147153 GATTCAGAGGGGAAGCCCG 59.853 63.158 0.00 0.00 46.66 6.13
1881 2169 5.123820 GGTTGCAGCACTAACATGATTAGAA 59.876 40.000 16.84 3.09 0.00 2.10
1958 2249 4.523943 TCAAACCTCATTTTCTCACCATGG 59.476 41.667 11.19 11.19 0.00 3.66
1997 2288 5.330278 GCACGAGTAAAGCGTTTAAAACAAC 60.330 40.000 0.00 0.00 40.44 3.32
2036 2327 6.945636 TCCTCAGGAATTCCTTGTTAACTA 57.054 37.500 24.93 2.48 46.09 2.24
2127 2418 3.951775 TGCATGGGAATGTAACCAAAC 57.048 42.857 0.00 0.00 40.73 2.93
2393 2684 7.282585 TGGGATCAGAAGAGTAATTAACATGG 58.717 38.462 0.00 0.00 0.00 3.66
2466 2757 7.593825 ACTCTGGATTTGCAAGTAAACATTAC 58.406 34.615 0.00 0.00 0.00 1.89
2639 2934 2.435805 AGAGGAAACTGAGCACAGAACA 59.564 45.455 18.54 0.00 46.03 3.18
2678 2973 7.703328 TCAGAGGTTTCACAAAGACAAATAAC 58.297 34.615 0.00 0.00 0.00 1.89
2733 3028 5.163683 CGAGAGGGACTAATAAACTCGAACA 60.164 44.000 0.00 0.00 44.47 3.18
2739 3034 8.537858 ACAAAATACGAGAGGGACTAATAAACT 58.462 33.333 0.00 0.00 41.55 2.66
2799 3094 8.537728 TCTTATATTTGTTTACGGAGGGAGTA 57.462 34.615 0.00 0.00 0.00 2.59
2800 3095 7.427989 TCTTATATTTGTTTACGGAGGGAGT 57.572 36.000 0.00 0.00 0.00 3.85
2801 3096 6.424207 GCTCTTATATTTGTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
2802 3097 6.285990 GCTCTTATATTTGTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
2803 3098 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
2804 3099 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
2805 3100 6.823678 ACGCTCTTATATTTGTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
2806 3101 7.599630 AAACGCTCTTATATTTGTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
2807 3102 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
2812 3107 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
2843 3138 9.193133 GCAAATATAAGAGCGTTTAGATCACTA 57.807 33.333 0.00 0.00 37.82 2.74
2844 3139 7.928706 AGCAAATATAAGAGCGTTTAGATCACT 59.071 33.333 0.00 0.00 37.82 3.41
2845 3140 8.077836 AGCAAATATAAGAGCGTTTAGATCAC 57.922 34.615 0.00 0.00 37.82 3.06
2846 3141 8.662781 AAGCAAATATAAGAGCGTTTAGATCA 57.337 30.769 0.00 0.00 37.82 2.92
2848 3143 9.542462 TGTAAGCAAATATAAGAGCGTTTAGAT 57.458 29.630 0.00 0.00 0.00 1.98
2849 3144 8.936070 TGTAAGCAAATATAAGAGCGTTTAGA 57.064 30.769 0.00 0.00 0.00 2.10
2850 3145 9.031360 TCTGTAAGCAAATATAAGAGCGTTTAG 57.969 33.333 0.00 0.00 0.00 1.85
2851 3146 8.936070 TCTGTAAGCAAATATAAGAGCGTTTA 57.064 30.769 0.00 0.00 0.00 2.01
2852 3147 7.011482 CCTCTGTAAGCAAATATAAGAGCGTTT 59.989 37.037 0.00 0.00 0.00 3.60
2853 3148 6.480320 CCTCTGTAAGCAAATATAAGAGCGTT 59.520 38.462 0.00 0.00 0.00 4.84
2854 3149 5.986135 CCTCTGTAAGCAAATATAAGAGCGT 59.014 40.000 0.00 0.00 0.00 5.07
2855 3150 5.406780 CCCTCTGTAAGCAAATATAAGAGCG 59.593 44.000 0.00 0.00 0.00 5.03
2856 3151 6.525629 TCCCTCTGTAAGCAAATATAAGAGC 58.474 40.000 0.00 0.00 0.00 4.09
2857 3152 7.731054 ACTCCCTCTGTAAGCAAATATAAGAG 58.269 38.462 0.00 0.00 0.00 2.85
2858 3153 7.676683 ACTCCCTCTGTAAGCAAATATAAGA 57.323 36.000 0.00 0.00 0.00 2.10
2862 3157 9.160412 ACTTATACTCCCTCTGTAAGCAAATAT 57.840 33.333 0.00 0.00 0.00 1.28
2863 3158 8.548880 ACTTATACTCCCTCTGTAAGCAAATA 57.451 34.615 0.00 0.00 0.00 1.40
2864 3159 7.439108 ACTTATACTCCCTCTGTAAGCAAAT 57.561 36.000 0.00 0.00 0.00 2.32
2865 3160 6.869206 ACTTATACTCCCTCTGTAAGCAAA 57.131 37.500 0.00 0.00 0.00 3.68
2866 3161 6.869206 AACTTATACTCCCTCTGTAAGCAA 57.131 37.500 0.00 0.00 0.00 3.91
2867 3162 7.124052 AGTAACTTATACTCCCTCTGTAAGCA 58.876 38.462 0.00 0.00 0.00 3.91
2868 3163 7.585579 AGTAACTTATACTCCCTCTGTAAGC 57.414 40.000 0.00 0.00 0.00 3.09
2869 3164 7.921745 GCAAGTAACTTATACTCCCTCTGTAAG 59.078 40.741 0.00 0.00 0.00 2.34
2870 3165 7.147776 GGCAAGTAACTTATACTCCCTCTGTAA 60.148 40.741 0.00 0.00 0.00 2.41
2871 3166 6.323225 GGCAAGTAACTTATACTCCCTCTGTA 59.677 42.308 0.00 0.00 0.00 2.74
2872 3167 5.128991 GGCAAGTAACTTATACTCCCTCTGT 59.871 44.000 0.00 0.00 0.00 3.41
2873 3168 5.128827 TGGCAAGTAACTTATACTCCCTCTG 59.871 44.000 0.00 0.00 0.00 3.35
2874 3169 5.128991 GTGGCAAGTAACTTATACTCCCTCT 59.871 44.000 0.00 0.00 0.00 3.69
2875 3170 5.105064 TGTGGCAAGTAACTTATACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
2876 3171 4.781087 TGTGGCAAGTAACTTATACTCCCT 59.219 41.667 0.00 0.00 0.00 4.20
2877 3172 5.093849 TGTGGCAAGTAACTTATACTCCC 57.906 43.478 0.00 0.00 0.00 4.30
2878 3173 7.443259 TTTTGTGGCAAGTAACTTATACTCC 57.557 36.000 0.00 0.00 0.00 3.85
3107 3402 0.107214 TTTGATAGCGGCCCCAGAAG 60.107 55.000 0.00 0.00 0.00 2.85
3260 3737 5.486526 AGCAGTTTGGAGAGAATTCACTAG 58.513 41.667 8.44 0.00 0.00 2.57
3382 3859 6.113411 ACAATGATTTGTGCCCTAGTAGTAC 58.887 40.000 0.00 0.00 44.36 2.73
3392 3893 5.577945 CACCAGATAAACAATGATTTGTGCC 59.422 40.000 0.00 0.00 45.30 5.01
3558 4059 1.410365 GGAGGGAGTAGTCAGCTGCTA 60.410 57.143 9.47 11.13 37.80 3.49
3569 4070 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3570 4071 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3571 4072 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3572 4073 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3573 4074 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3574 4075 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
3575 4076 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
3576 4077 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
3577 4078 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
3606 4107 6.388435 AAGACGTTTTGACACTAGACTAGT 57.612 37.500 9.45 9.45 40.28 2.57
3607 4108 7.358066 TGTAAGACGTTTTGACACTAGACTAG 58.642 38.462 8.00 8.00 0.00 2.57
3608 4109 7.263100 TGTAAGACGTTTTGACACTAGACTA 57.737 36.000 0.83 0.00 0.00 2.59
3609 4110 6.140303 TGTAAGACGTTTTGACACTAGACT 57.860 37.500 0.83 0.00 0.00 3.24
3610 4111 7.404139 AATGTAAGACGTTTTGACACTAGAC 57.596 36.000 0.83 0.00 0.00 2.59
3611 4112 9.135843 CATAATGTAAGACGTTTTGACACTAGA 57.864 33.333 0.83 0.00 30.78 2.43
3612 4113 8.380644 CCATAATGTAAGACGTTTTGACACTAG 58.619 37.037 0.83 0.00 30.78 2.57
3613 4114 7.332430 CCCATAATGTAAGACGTTTTGACACTA 59.668 37.037 0.83 0.00 30.78 2.74
3614 4115 6.148811 CCCATAATGTAAGACGTTTTGACACT 59.851 38.462 0.83 0.00 30.78 3.55
3615 4116 6.311723 CCCATAATGTAAGACGTTTTGACAC 58.688 40.000 0.83 0.00 30.78 3.67
3616 4117 5.413213 CCCCATAATGTAAGACGTTTTGACA 59.587 40.000 0.83 3.10 30.78 3.58
3617 4118 5.675323 GCCCCATAATGTAAGACGTTTTGAC 60.675 44.000 0.83 0.00 30.78 3.18
3618 4119 4.396790 GCCCCATAATGTAAGACGTTTTGA 59.603 41.667 0.83 0.00 30.78 2.69
3619 4120 4.668289 GCCCCATAATGTAAGACGTTTTG 58.332 43.478 0.83 0.00 0.00 2.44
3620 4121 3.375922 CGCCCCATAATGTAAGACGTTTT 59.624 43.478 0.00 0.00 0.00 2.43
3621 4122 2.940410 CGCCCCATAATGTAAGACGTTT 59.060 45.455 0.00 0.00 0.00 3.60
3622 4123 2.557317 CGCCCCATAATGTAAGACGTT 58.443 47.619 0.00 0.00 0.00 3.99
3623 4124 1.202604 CCGCCCCATAATGTAAGACGT 60.203 52.381 0.00 0.00 0.00 4.34
3624 4125 1.069513 TCCGCCCCATAATGTAAGACG 59.930 52.381 0.00 0.00 0.00 4.18
3625 4126 2.550208 CCTCCGCCCCATAATGTAAGAC 60.550 54.545 0.00 0.00 0.00 3.01
3626 4127 1.697432 CCTCCGCCCCATAATGTAAGA 59.303 52.381 0.00 0.00 0.00 2.10
3627 4128 1.271379 CCCTCCGCCCCATAATGTAAG 60.271 57.143 0.00 0.00 0.00 2.34
3628 4129 0.768622 CCCTCCGCCCCATAATGTAA 59.231 55.000 0.00 0.00 0.00 2.41
3629 4130 0.104882 TCCCTCCGCCCCATAATGTA 60.105 55.000 0.00 0.00 0.00 2.29
3630 4131 1.385347 TCCCTCCGCCCCATAATGT 60.385 57.895 0.00 0.00 0.00 2.71
3631 4132 1.376466 CTCCCTCCGCCCCATAATG 59.624 63.158 0.00 0.00 0.00 1.90
3632 4133 0.192566 TACTCCCTCCGCCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
3633 4134 0.471211 CTACTCCCTCCGCCCCATAA 60.471 60.000 0.00 0.00 0.00 1.90
3634 4135 1.155390 CTACTCCCTCCGCCCCATA 59.845 63.158 0.00 0.00 0.00 2.74
3635 4136 2.037304 ATCTACTCCCTCCGCCCCAT 62.037 60.000 0.00 0.00 0.00 4.00
3636 4137 2.711899 ATCTACTCCCTCCGCCCCA 61.712 63.158 0.00 0.00 0.00 4.96
3637 4138 2.201771 ATCTACTCCCTCCGCCCC 59.798 66.667 0.00 0.00 0.00 5.80
3638 4139 1.049289 AACATCTACTCCCTCCGCCC 61.049 60.000 0.00 0.00 0.00 6.13
3639 4140 1.340568 GTAACATCTACTCCCTCCGCC 59.659 57.143 0.00 0.00 0.00 6.13
3640 4141 1.001597 CGTAACATCTACTCCCTCCGC 60.002 57.143 0.00 0.00 0.00 5.54
3641 4142 1.607628 CCGTAACATCTACTCCCTCCG 59.392 57.143 0.00 0.00 0.00 4.63
3642 4143 2.664015 ACCGTAACATCTACTCCCTCC 58.336 52.381 0.00 0.00 0.00 4.30
3643 4144 3.252944 GCTACCGTAACATCTACTCCCTC 59.747 52.174 0.00 0.00 0.00 4.30
3644 4145 3.117587 AGCTACCGTAACATCTACTCCCT 60.118 47.826 0.00 0.00 0.00 4.20
3645 4146 3.220940 AGCTACCGTAACATCTACTCCC 58.779 50.000 0.00 0.00 0.00 4.30
3646 4147 4.136051 AGAGCTACCGTAACATCTACTCC 58.864 47.826 0.00 0.00 0.00 3.85
3647 4148 4.084433 CGAGAGCTACCGTAACATCTACTC 60.084 50.000 0.00 0.00 0.00 2.59
3648 4149 3.808726 CGAGAGCTACCGTAACATCTACT 59.191 47.826 0.00 0.00 0.00 2.57
3649 4150 3.559242 ACGAGAGCTACCGTAACATCTAC 59.441 47.826 10.65 0.00 37.23 2.59
3697 4198 9.918630 ATCAAAACAAAATACATCAGAAAGAGG 57.081 29.630 0.00 0.00 0.00 3.69
3878 4379 4.521536 AGAGTAGTCCTACCACATAGCA 57.478 45.455 0.89 0.00 36.75 3.49
3904 4405 5.127682 ACAACTTTTCTGCCTGAAACTTCAT 59.872 36.000 0.00 0.00 43.55 2.57
4103 4604 3.454447 CACCACTATACTCATGACCCCAA 59.546 47.826 0.00 0.00 0.00 4.12
4314 4816 8.567285 AGCATAGCTATAAACAACAAGTTCTT 57.433 30.769 5.77 0.00 36.84 2.52
4428 4930 2.805099 CTGCAGTTCAGACAACTTCTCC 59.195 50.000 5.25 0.00 45.72 3.71
4475 4977 0.966179 TCTGCAGGACTACGCTTCAA 59.034 50.000 15.13 0.00 0.00 2.69
4620 5122 7.362574 CCTTTTGTTTTTCTCTTCCTGTACACA 60.363 37.037 0.00 0.00 0.00 3.72
4793 5296 2.158856 CCCTGCTTGATGCTCTATCACA 60.159 50.000 0.00 0.00 45.22 3.58
4914 5417 4.978099 TCTCCCTGATTCTTTATCATGGC 58.022 43.478 0.00 0.00 44.39 4.40
5328 5850 2.285834 GCACTATGTCACACGCTATTGC 60.286 50.000 0.00 0.00 0.00 3.56
5339 5861 2.234414 TCATGAGTGCTGCACTATGTCA 59.766 45.455 33.04 25.88 45.44 3.58
5379 5901 3.226429 GACGCCTGCAGAGACACCA 62.226 63.158 17.39 0.00 0.00 4.17
5435 5957 5.749462 CAGGACCCTCAGAAAATCTAATGT 58.251 41.667 0.00 0.00 0.00 2.71
5455 5977 3.474600 CATTCTTGTCATCCTAGGCAGG 58.525 50.000 2.96 0.00 44.17 4.85
5544 6066 3.770388 TCACGTTCATGAGTTATGGGGTA 59.230 43.478 0.00 0.00 37.39 3.69
5555 6077 7.857734 ATGGTTTAACATATCACGTTCATGA 57.142 32.000 7.57 0.00 0.00 3.07
5573 6095 9.869757 GTTAAAGCCATAACAGATAAATGGTTT 57.130 29.630 2.80 0.26 43.46 3.27
5606 6128 7.990886 GGGATACAATGAAGTACATAAGGTTGA 59.009 37.037 0.00 0.00 38.38 3.18
5625 6147 0.981183 ACGTCTTGGCAAGGGATACA 59.019 50.000 25.92 3.61 39.74 2.29
5640 6162 3.040147 TGAGAAATCAACAGGGACGTC 57.960 47.619 7.13 7.13 0.00 4.34
5669 6191 3.766545 CCCCCTCTCAATTCAAGACAAA 58.233 45.455 0.00 0.00 0.00 2.83
5670 6192 3.439857 CCCCCTCTCAATTCAAGACAA 57.560 47.619 0.00 0.00 0.00 3.18
5687 6209 1.899814 GTTTCAGGGTCAATTTCCCCC 59.100 52.381 10.81 4.20 45.64 5.40
5689 6211 1.544246 CGGTTTCAGGGTCAATTTCCC 59.456 52.381 7.24 7.24 44.90 3.97
5691 6213 4.320870 TCTACGGTTTCAGGGTCAATTTC 58.679 43.478 0.00 0.00 0.00 2.17
5775 6301 8.514330 TGAATGTTGTTACACTACTTCCTTTT 57.486 30.769 0.00 0.00 37.03 2.27
5791 6317 2.328319 AGGGCATTGGTTGAATGTTGT 58.672 42.857 0.00 0.00 43.17 3.32
5896 6423 4.168101 ACCTAAGGAGATGTTTCTGTGGA 58.832 43.478 0.00 0.00 30.30 4.02
5898 6425 6.287589 ACTACCTAAGGAGATGTTTCTGTG 57.712 41.667 0.00 0.00 30.30 3.66
5926 6454 2.986728 AGTACCCCACTTTCAAGGATGT 59.013 45.455 0.00 0.00 31.59 3.06
6004 6532 8.217111 TGCCCTAGATATTGTGAATTTGTGATA 58.783 33.333 0.00 0.00 0.00 2.15
6041 6569 1.068753 CTAGCCATGCAGGTCCTCG 59.931 63.158 0.00 0.00 40.61 4.63
6062 6590 2.094894 ACTTCTTGCTTTGATGCGATCG 59.905 45.455 11.69 11.69 35.36 3.69
6112 6640 0.548510 GCCCTCAGGTGCTAGGAAAT 59.451 55.000 0.00 0.00 34.58 2.17
6113 6641 0.840288 TGCCCTCAGGTGCTAGGAAA 60.840 55.000 5.83 0.00 34.58 3.13
6135 6663 3.181479 TGCACTTATTCTAGCACTACCCG 60.181 47.826 0.00 0.00 31.05 5.28
6143 6671 7.756558 AGAAACTTCAATGCACTTATTCTAGC 58.243 34.615 0.00 0.00 0.00 3.42
6183 6711 6.128634 CCTTGAGATACAACGGTGTTCTTTAC 60.129 42.308 13.38 4.01 39.30 2.01
6194 6722 7.545965 AGAAAATCAGTACCTTGAGATACAACG 59.454 37.037 0.00 0.00 34.56 4.10
6234 6762 1.606668 GTCTGGGCATCAAAACGACAA 59.393 47.619 0.00 0.00 0.00 3.18
6238 6766 1.522668 TGAGTCTGGGCATCAAAACG 58.477 50.000 0.00 0.00 0.00 3.60
6241 6769 2.995283 CAGATGAGTCTGGGCATCAAA 58.005 47.619 0.00 0.00 46.56 2.69
6242 6770 2.704464 CAGATGAGTCTGGGCATCAA 57.296 50.000 0.00 0.00 46.56 2.57
6251 6779 2.581354 GCGGGTGCAGATGAGTCT 59.419 61.111 0.00 0.00 42.15 3.24
6252 6780 2.512515 GGCGGGTGCAGATGAGTC 60.513 66.667 0.00 0.00 45.35 3.36
6253 6781 4.101448 GGGCGGGTGCAGATGAGT 62.101 66.667 0.00 0.00 45.35 3.41
6254 6782 4.100084 TGGGCGGGTGCAGATGAG 62.100 66.667 0.00 0.00 45.35 2.90
6255 6783 4.100084 CTGGGCGGGTGCAGATGA 62.100 66.667 0.00 0.00 45.35 2.92
6259 6787 4.659172 TTTCCTGGGCGGGTGCAG 62.659 66.667 0.00 0.00 45.35 4.41
6260 6788 3.740495 TTTTTCCTGGGCGGGTGCA 62.740 57.895 0.00 0.00 45.35 4.57
6261 6789 2.915137 TTTTTCCTGGGCGGGTGC 60.915 61.111 0.00 0.00 41.71 5.01
6301 6829 7.540400 CGTGATAAATTGTCTACCATGCAAAAA 59.460 33.333 0.00 0.00 0.00 1.94
6302 6830 7.026562 CGTGATAAATTGTCTACCATGCAAAA 58.973 34.615 0.00 0.00 0.00 2.44
6303 6831 6.150307 ACGTGATAAATTGTCTACCATGCAAA 59.850 34.615 0.00 0.00 0.00 3.68
6304 6832 5.645929 ACGTGATAAATTGTCTACCATGCAA 59.354 36.000 0.00 0.00 0.00 4.08
6305 6833 5.064579 CACGTGATAAATTGTCTACCATGCA 59.935 40.000 10.90 0.00 0.00 3.96
6306 6834 5.293324 TCACGTGATAAATTGTCTACCATGC 59.707 40.000 15.76 0.00 0.00 4.06
6307 6835 6.018751 CCTCACGTGATAAATTGTCTACCATG 60.019 42.308 20.40 0.45 0.00 3.66
6308 6836 6.049149 CCTCACGTGATAAATTGTCTACCAT 58.951 40.000 20.40 0.00 0.00 3.55
6309 6837 5.046878 ACCTCACGTGATAAATTGTCTACCA 60.047 40.000 20.40 0.00 0.00 3.25
6310 6838 5.416947 ACCTCACGTGATAAATTGTCTACC 58.583 41.667 20.40 0.00 0.00 3.18
6311 6839 5.519206 GGACCTCACGTGATAAATTGTCTAC 59.481 44.000 20.40 4.42 0.00 2.59
6312 6840 5.657474 GGACCTCACGTGATAAATTGTCTA 58.343 41.667 20.40 0.00 0.00 2.59
6313 6841 4.504858 GGACCTCACGTGATAAATTGTCT 58.495 43.478 20.40 0.00 0.00 3.41
6314 6842 3.306166 CGGACCTCACGTGATAAATTGTC 59.694 47.826 20.40 16.64 0.00 3.18
6315 6843 3.259064 CGGACCTCACGTGATAAATTGT 58.741 45.455 20.40 9.41 0.00 2.71
6316 6844 2.030457 GCGGACCTCACGTGATAAATTG 59.970 50.000 20.40 5.95 0.00 2.32
6317 6845 2.093658 AGCGGACCTCACGTGATAAATT 60.094 45.455 20.40 1.30 0.00 1.82
6318 6846 1.480954 AGCGGACCTCACGTGATAAAT 59.519 47.619 20.40 4.65 0.00 1.40
6319 6847 0.892755 AGCGGACCTCACGTGATAAA 59.107 50.000 20.40 0.00 0.00 1.40
6320 6848 0.454600 GAGCGGACCTCACGTGATAA 59.545 55.000 20.40 0.00 40.45 1.75
6321 6849 0.678684 TGAGCGGACCTCACGTGATA 60.679 55.000 20.40 0.00 45.44 2.15
6322 6850 1.977009 TGAGCGGACCTCACGTGAT 60.977 57.895 20.40 4.74 45.44 3.06
6323 6851 2.596338 TGAGCGGACCTCACGTGA 60.596 61.111 18.88 18.88 45.44 4.35
6329 6857 4.437524 GCTCTAAAATTTTGAGCGGACCTC 60.438 45.833 25.52 10.31 42.70 3.85
6330 6858 3.440522 GCTCTAAAATTTTGAGCGGACCT 59.559 43.478 25.52 0.00 42.70 3.85
6331 6859 3.759418 GCTCTAAAATTTTGAGCGGACC 58.241 45.455 25.52 11.22 42.70 4.46
6337 6865 8.822652 AACTCCAAATGCTCTAAAATTTTGAG 57.177 30.769 13.76 16.64 39.58 3.02
6338 6866 8.641541 AGAACTCCAAATGCTCTAAAATTTTGA 58.358 29.630 13.76 8.01 30.69 2.69
6339 6867 8.706035 CAGAACTCCAAATGCTCTAAAATTTTG 58.294 33.333 13.76 4.15 0.00 2.44
6340 6868 8.641541 TCAGAACTCCAAATGCTCTAAAATTTT 58.358 29.630 8.75 8.75 0.00 1.82
6341 6869 8.181904 TCAGAACTCCAAATGCTCTAAAATTT 57.818 30.769 0.00 0.00 0.00 1.82
6342 6870 7.576477 GCTCAGAACTCCAAATGCTCTAAAATT 60.576 37.037 0.00 0.00 0.00 1.82
6343 6871 6.127786 GCTCAGAACTCCAAATGCTCTAAAAT 60.128 38.462 0.00 0.00 0.00 1.82
6344 6872 5.182001 GCTCAGAACTCCAAATGCTCTAAAA 59.818 40.000 0.00 0.00 0.00 1.52
6345 6873 4.697352 GCTCAGAACTCCAAATGCTCTAAA 59.303 41.667 0.00 0.00 0.00 1.85
6346 6874 4.256920 GCTCAGAACTCCAAATGCTCTAA 58.743 43.478 0.00 0.00 0.00 2.10
6347 6875 3.261643 TGCTCAGAACTCCAAATGCTCTA 59.738 43.478 0.00 0.00 0.00 2.43
6348 6876 2.039480 TGCTCAGAACTCCAAATGCTCT 59.961 45.455 0.00 0.00 0.00 4.09
6349 6877 2.419324 CTGCTCAGAACTCCAAATGCTC 59.581 50.000 0.00 0.00 0.00 4.26
6350 6878 2.434428 CTGCTCAGAACTCCAAATGCT 58.566 47.619 0.00 0.00 0.00 3.79
6351 6879 1.135460 GCTGCTCAGAACTCCAAATGC 60.135 52.381 0.29 0.00 0.00 3.56
6352 6880 2.419324 GAGCTGCTCAGAACTCCAAATG 59.581 50.000 24.02 0.00 0.00 2.32
6353 6881 2.305343 AGAGCTGCTCAGAACTCCAAAT 59.695 45.455 29.49 3.19 32.06 2.32
6354 6882 1.696336 AGAGCTGCTCAGAACTCCAAA 59.304 47.619 29.49 0.00 32.06 3.28
6355 6883 1.346062 AGAGCTGCTCAGAACTCCAA 58.654 50.000 29.49 0.00 32.06 3.53
6356 6884 1.346062 AAGAGCTGCTCAGAACTCCA 58.654 50.000 29.49 0.00 32.06 3.86
6357 6885 2.738321 GCTAAGAGCTGCTCAGAACTCC 60.738 54.545 29.49 8.75 38.45 3.85
6358 6886 2.094286 TGCTAAGAGCTGCTCAGAACTC 60.094 50.000 29.49 14.14 42.97 3.01
6359 6887 1.898472 TGCTAAGAGCTGCTCAGAACT 59.102 47.619 29.49 7.47 42.97 3.01
6360 6888 2.376808 TGCTAAGAGCTGCTCAGAAC 57.623 50.000 29.49 16.88 42.97 3.01
6361 6889 3.407424 TTTGCTAAGAGCTGCTCAGAA 57.593 42.857 29.49 12.60 42.97 3.02
6362 6890 3.407424 TTTTGCTAAGAGCTGCTCAGA 57.593 42.857 29.49 16.34 42.97 3.27
6380 6908 8.594687 CATTGTTTTGACTCGATTTGTCTTTTT 58.405 29.630 5.08 0.00 35.63 1.94
6381 6909 7.254084 GCATTGTTTTGACTCGATTTGTCTTTT 60.254 33.333 5.08 0.00 35.63 2.27
6382 6910 6.198966 GCATTGTTTTGACTCGATTTGTCTTT 59.801 34.615 5.08 0.00 35.63 2.52
6383 6911 5.687285 GCATTGTTTTGACTCGATTTGTCTT 59.313 36.000 5.08 0.00 35.63 3.01
6384 6912 5.215160 GCATTGTTTTGACTCGATTTGTCT 58.785 37.500 5.08 0.00 35.63 3.41
6385 6913 4.975502 TGCATTGTTTTGACTCGATTTGTC 59.024 37.500 0.00 0.00 35.21 3.18
6386 6914 4.930963 TGCATTGTTTTGACTCGATTTGT 58.069 34.783 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.