Multiple sequence alignment - TraesCS6B01G245400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G245400 chr6B 100.000 4235 0 0 1 4235 438092189 438096423 0.000000e+00 7821.0
1 TraesCS6B01G245400 chr6D 91.454 1884 84 21 1855 3711 276130445 276132278 0.000000e+00 2516.0
2 TraesCS6B01G245400 chr6D 93.262 935 42 9 781 1696 276129232 276130164 0.000000e+00 1358.0
3 TraesCS6B01G245400 chr6D 96.868 447 13 1 3789 4235 276133131 276133576 0.000000e+00 747.0
4 TraesCS6B01G245400 chr6D 95.652 161 7 0 1695 1855 276130214 276130374 4.200000e-65 259.0
5 TraesCS6B01G245400 chr6A 90.335 1045 46 13 2669 3711 399879713 399878722 0.000000e+00 1319.0
6 TraesCS6B01G245400 chr6A 93.073 895 37 11 817 1700 399881717 399880837 0.000000e+00 1286.0
7 TraesCS6B01G245400 chr6A 88.998 1018 58 21 1695 2671 399880791 399879787 0.000000e+00 1210.0
8 TraesCS6B01G245400 chr6A 94.980 498 24 1 3739 4235 399878419 399877922 0.000000e+00 780.0
9 TraesCS6B01G245400 chr6A 79.528 381 50 25 207 567 7968176 7968548 3.270000e-61 246.0
10 TraesCS6B01G245400 chr6A 79.265 381 51 25 207 567 7866325 7866697 1.520000e-59 241.0
11 TraesCS6B01G245400 chr6A 80.332 361 35 29 207 555 7901074 7901410 1.520000e-59 241.0
12 TraesCS6B01G245400 chr6A 79.003 381 51 26 207 567 7832366 7832737 2.550000e-57 233.0
13 TraesCS6B01G245400 chr6A 83.936 249 25 13 207 445 7933187 7933430 1.530000e-54 224.0
14 TraesCS6B01G245400 chr7A 79.883 512 91 11 3730 4235 514668186 514667681 8.650000e-97 364.0
15 TraesCS6B01G245400 chr7A 79.612 206 24 15 360 557 538280571 538280766 9.550000e-27 132.0
16 TraesCS6B01G245400 chr7A 77.987 159 19 10 398 555 691445984 691446127 7.540000e-13 86.1
17 TraesCS6B01G245400 chr5B 74.784 579 92 36 23 559 509821818 509821252 1.190000e-50 211.0
18 TraesCS6B01G245400 chr5B 80.282 213 29 7 355 556 15329090 15329300 9.490000e-32 148.0
19 TraesCS6B01G245400 chr7D 80.645 248 39 8 228 468 111073069 111073314 2.600000e-42 183.0
20 TraesCS6B01G245400 chr4D 82.828 198 28 6 276 468 414059574 414059770 5.630000e-39 172.0
21 TraesCS6B01G245400 chr2A 78.927 261 37 15 308 563 654423979 654423732 1.220000e-35 161.0
22 TraesCS6B01G245400 chr3D 76.774 155 34 2 3822 3975 50779693 50779846 7.540000e-13 86.1
23 TraesCS6B01G245400 chr7B 77.576 165 19 11 398 561 678642373 678642520 2.710000e-12 84.2
24 TraesCS6B01G245400 chr7B 82.192 73 11 2 495 566 489413513 489413584 1.270000e-05 62.1
25 TraesCS6B01G245400 chr4A 76.074 163 25 11 398 555 6340101 6340254 5.870000e-09 73.1
26 TraesCS6B01G245400 chrUn 89.362 47 2 2 487 533 22042919 22042962 5.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G245400 chr6B 438092189 438096423 4234 False 7821.00 7821 100.0000 1 4235 1 chr6B.!!$F1 4234
1 TraesCS6B01G245400 chr6D 276129232 276133576 4344 False 1220.00 2516 94.3090 781 4235 4 chr6D.!!$F1 3454
2 TraesCS6B01G245400 chr6A 399877922 399881717 3795 True 1148.75 1319 91.8465 817 4235 4 chr6A.!!$R1 3418
3 TraesCS6B01G245400 chr7A 514667681 514668186 505 True 364.00 364 79.8830 3730 4235 1 chr7A.!!$R1 505
4 TraesCS6B01G245400 chr5B 509821252 509821818 566 True 211.00 211 74.7840 23 559 1 chr5B.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 108 0.028374 GTTGTTGGCACGGTGTGTAC 59.972 55.000 10.24 5.94 35.75 2.90 F
704 712 0.028770 CAGCGAGTCCGAAGCTAGAG 59.971 60.000 0.00 0.00 39.48 2.43 F
712 720 0.386113 CCGAAGCTAGAGTAGGGTGC 59.614 60.000 0.00 0.00 0.00 5.01 F
1290 1315 0.387929 ATAACATGGGCGACGTCGAT 59.612 50.000 39.74 22.34 43.02 3.59 F
2724 2987 1.345741 CATGAGTGCCGATGGACCTAT 59.654 52.381 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1297 1.023502 TATCGACGTCGCCCATGTTA 58.976 50.0 32.19 13.58 39.6 2.41 R
2679 2942 0.604073 TCATGAACGCGTCCCAGTTA 59.396 50.0 14.44 0.00 0.0 2.24 R
2680 2943 0.949105 GTCATGAACGCGTCCCAGTT 60.949 55.0 14.44 0.00 0.0 3.16 R
2843 3106 0.109153 AAGTGATGGCAGCACACAGA 59.891 50.0 34.15 0.00 38.7 3.41 R
3716 3988 0.266152 ATAGGGACAGAGAGGGTGGG 59.734 60.0 0.00 0.00 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.287977 AAAAGGGAAGGGGAGAAACG 57.712 50.000 0.00 0.00 0.00 3.60
20 21 0.404426 AAAGGGAAGGGGAGAAACGG 59.596 55.000 0.00 0.00 0.00 4.44
21 22 1.498176 AAGGGAAGGGGAGAAACGGG 61.498 60.000 0.00 0.00 0.00 5.28
47 48 3.860641 TCCGGTCCCCTAGGAGAA 58.139 61.111 11.48 0.00 45.21 2.87
49 50 1.457831 CCGGTCCCCTAGGAGAAGG 60.458 68.421 11.48 5.98 45.21 3.46
53 54 1.481615 GGTCCCCTAGGAGAAGGCTAG 60.482 61.905 11.48 0.00 45.21 3.42
55 56 1.182385 CCCCTAGGAGAAGGCTAGCG 61.182 65.000 11.48 0.00 35.09 4.26
56 57 1.663173 CCTAGGAGAAGGCTAGCGC 59.337 63.158 9.00 0.00 0.00 5.92
73 81 1.884926 GCCACTGCGCCTATGTCTC 60.885 63.158 4.18 0.00 0.00 3.36
74 82 1.517361 CCACTGCGCCTATGTCTCA 59.483 57.895 4.18 0.00 0.00 3.27
76 84 1.139734 ACTGCGCCTATGTCTCACG 59.860 57.895 4.18 0.00 0.00 4.35
77 85 1.313091 ACTGCGCCTATGTCTCACGA 61.313 55.000 4.18 0.00 0.00 4.35
78 86 0.031314 CTGCGCCTATGTCTCACGAT 59.969 55.000 4.18 0.00 0.00 3.73
79 87 1.266989 CTGCGCCTATGTCTCACGATA 59.733 52.381 4.18 0.00 0.00 2.92
80 88 1.679153 TGCGCCTATGTCTCACGATAA 59.321 47.619 4.18 0.00 0.00 1.75
81 89 2.287608 TGCGCCTATGTCTCACGATAAG 60.288 50.000 4.18 0.00 0.00 1.73
82 90 2.287668 GCGCCTATGTCTCACGATAAGT 60.288 50.000 0.00 0.00 0.00 2.24
83 91 3.795826 GCGCCTATGTCTCACGATAAGTT 60.796 47.826 0.00 0.00 0.00 2.66
84 92 3.731216 CGCCTATGTCTCACGATAAGTTG 59.269 47.826 0.00 0.00 0.00 3.16
85 93 4.683832 GCCTATGTCTCACGATAAGTTGT 58.316 43.478 0.00 0.00 0.00 3.32
86 94 5.109903 GCCTATGTCTCACGATAAGTTGTT 58.890 41.667 0.00 0.00 0.00 2.83
87 95 5.005779 GCCTATGTCTCACGATAAGTTGTTG 59.994 44.000 0.00 0.00 0.00 3.33
88 96 5.520288 CCTATGTCTCACGATAAGTTGTTGG 59.480 44.000 0.00 0.00 0.00 3.77
89 97 3.064207 TGTCTCACGATAAGTTGTTGGC 58.936 45.455 0.00 0.00 0.00 4.52
90 98 3.064207 GTCTCACGATAAGTTGTTGGCA 58.936 45.455 0.00 0.00 0.00 4.92
91 99 3.064207 TCTCACGATAAGTTGTTGGCAC 58.936 45.455 0.00 0.00 0.00 5.01
92 100 1.795872 TCACGATAAGTTGTTGGCACG 59.204 47.619 0.00 0.00 0.00 5.34
93 101 1.136085 CACGATAAGTTGTTGGCACGG 60.136 52.381 0.00 0.00 0.00 4.94
94 102 1.153353 CGATAAGTTGTTGGCACGGT 58.847 50.000 0.00 0.00 0.00 4.83
95 103 1.136085 CGATAAGTTGTTGGCACGGTG 60.136 52.381 3.15 3.15 0.00 4.94
96 104 1.877443 GATAAGTTGTTGGCACGGTGT 59.123 47.619 10.24 0.00 0.00 4.16
97 105 1.018148 TAAGTTGTTGGCACGGTGTG 58.982 50.000 10.24 0.00 36.51 3.82
98 106 0.963355 AAGTTGTTGGCACGGTGTGT 60.963 50.000 10.24 0.00 35.75 3.72
99 107 0.107606 AGTTGTTGGCACGGTGTGTA 60.108 50.000 10.24 0.00 35.75 2.90
100 108 0.028374 GTTGTTGGCACGGTGTGTAC 59.972 55.000 10.24 5.94 35.75 2.90
101 109 0.107606 TTGTTGGCACGGTGTGTACT 60.108 50.000 10.24 0.00 35.75 2.73
102 110 0.107606 TGTTGGCACGGTGTGTACTT 60.108 50.000 10.24 0.00 35.75 2.24
103 111 0.584876 GTTGGCACGGTGTGTACTTC 59.415 55.000 10.24 0.00 35.75 3.01
104 112 0.178301 TTGGCACGGTGTGTACTTCA 59.822 50.000 10.24 0.00 35.75 3.02
105 113 0.531090 TGGCACGGTGTGTACTTCAC 60.531 55.000 10.24 11.41 46.31 3.18
115 123 2.822827 GTGTACTTCACGCAAATGACG 58.177 47.619 0.00 0.00 37.60 4.35
116 124 2.220133 GTGTACTTCACGCAAATGACGT 59.780 45.455 0.00 0.00 46.42 4.34
117 125 2.473609 TGTACTTCACGCAAATGACGTC 59.526 45.455 9.11 9.11 42.96 4.34
118 126 0.506932 ACTTCACGCAAATGACGTCG 59.493 50.000 11.62 0.17 42.96 5.12
119 127 0.179250 CTTCACGCAAATGACGTCGG 60.179 55.000 11.62 1.50 42.96 4.79
120 128 0.876777 TTCACGCAAATGACGTCGGT 60.877 50.000 11.62 0.00 42.96 4.69
121 129 0.876777 TCACGCAAATGACGTCGGTT 60.877 50.000 11.62 5.61 42.96 4.44
122 130 0.041663 CACGCAAATGACGTCGGTTT 60.042 50.000 11.62 11.60 42.96 3.27
123 131 0.658897 ACGCAAATGACGTCGGTTTT 59.341 45.000 11.62 7.99 40.28 2.43
124 132 1.064357 ACGCAAATGACGTCGGTTTTT 59.936 42.857 11.62 5.52 40.28 1.94
125 133 1.706597 CGCAAATGACGTCGGTTTTTC 59.293 47.619 11.62 4.79 0.00 2.29
126 134 2.048498 GCAAATGACGTCGGTTTTTCC 58.952 47.619 11.62 2.67 0.00 3.13
127 135 2.541999 GCAAATGACGTCGGTTTTTCCA 60.542 45.455 11.62 0.00 35.57 3.53
128 136 3.855524 GCAAATGACGTCGGTTTTTCCAT 60.856 43.478 11.62 0.00 35.57 3.41
129 137 3.552604 AATGACGTCGGTTTTTCCATG 57.447 42.857 11.62 0.00 35.57 3.66
130 138 1.231221 TGACGTCGGTTTTTCCATGG 58.769 50.000 11.62 4.97 35.57 3.66
131 139 1.232119 GACGTCGGTTTTTCCATGGT 58.768 50.000 12.58 0.00 35.57 3.55
132 140 1.605232 GACGTCGGTTTTTCCATGGTT 59.395 47.619 12.58 0.00 35.57 3.67
133 141 2.025898 ACGTCGGTTTTTCCATGGTTT 58.974 42.857 12.58 0.00 35.57 3.27
134 142 2.427812 ACGTCGGTTTTTCCATGGTTTT 59.572 40.909 12.58 0.00 35.57 2.43
135 143 3.047093 CGTCGGTTTTTCCATGGTTTTC 58.953 45.455 12.58 0.15 35.57 2.29
136 144 3.489398 CGTCGGTTTTTCCATGGTTTTCA 60.489 43.478 12.58 0.00 35.57 2.69
137 145 4.627058 GTCGGTTTTTCCATGGTTTTCAT 58.373 39.130 12.58 0.00 36.31 2.57
214 222 8.980143 TTGTTCTTTGTTCGAATTTTTCTTCT 57.020 26.923 0.00 0.00 0.00 2.85
215 223 8.614994 TGTTCTTTGTTCGAATTTTTCTTCTC 57.385 30.769 0.00 0.00 0.00 2.87
216 224 8.458843 TGTTCTTTGTTCGAATTTTTCTTCTCT 58.541 29.630 0.00 0.00 0.00 3.10
217 225 9.931210 GTTCTTTGTTCGAATTTTTCTTCTCTA 57.069 29.630 0.00 0.00 0.00 2.43
290 298 9.487790 TTTCCTTAGGCTTATTTTGTTTCATTG 57.512 29.630 0.00 0.00 0.00 2.82
291 299 8.189119 TCCTTAGGCTTATTTTGTTTCATTGT 57.811 30.769 0.00 0.00 0.00 2.71
292 300 8.646900 TCCTTAGGCTTATTTTGTTTCATTGTT 58.353 29.630 0.00 0.00 0.00 2.83
293 301 9.271828 CCTTAGGCTTATTTTGTTTCATTGTTT 57.728 29.630 0.00 0.00 0.00 2.83
296 304 8.729805 AGGCTTATTTTGTTTCATTGTTTTCA 57.270 26.923 0.00 0.00 0.00 2.69
297 305 8.611757 AGGCTTATTTTGTTTCATTGTTTTCAC 58.388 29.630 0.00 0.00 0.00 3.18
298 306 8.611757 GGCTTATTTTGTTTCATTGTTTTCACT 58.388 29.630 0.00 0.00 0.00 3.41
299 307 9.986833 GCTTATTTTGTTTCATTGTTTTCACTT 57.013 25.926 0.00 0.00 0.00 3.16
324 332 8.794308 TTTTTGCCTTTTCTTTGTTTTTCTTG 57.206 26.923 0.00 0.00 0.00 3.02
325 333 7.503521 TTTGCCTTTTCTTTGTTTTTCTTGT 57.496 28.000 0.00 0.00 0.00 3.16
326 334 7.503521 TTGCCTTTTCTTTGTTTTTCTTGTT 57.496 28.000 0.00 0.00 0.00 2.83
327 335 7.503521 TGCCTTTTCTTTGTTTTTCTTGTTT 57.496 28.000 0.00 0.00 0.00 2.83
328 336 7.935520 TGCCTTTTCTTTGTTTTTCTTGTTTT 58.064 26.923 0.00 0.00 0.00 2.43
329 337 8.409371 TGCCTTTTCTTTGTTTTTCTTGTTTTT 58.591 25.926 0.00 0.00 0.00 1.94
387 395 9.713740 TTTGCAAATACATGTTCAACATTTTTC 57.286 25.926 8.05 0.00 36.53 2.29
388 396 8.429493 TGCAAATACATGTTCAACATTTTTCA 57.571 26.923 2.30 0.00 36.53 2.69
389 397 8.886719 TGCAAATACATGTTCAACATTTTTCAA 58.113 25.926 2.30 0.00 36.53 2.69
390 398 9.713740 GCAAATACATGTTCAACATTTTTCAAA 57.286 25.926 2.30 0.00 36.53 2.69
395 403 7.534282 ACATGTTCAACATTTTTCAAAAACCC 58.466 30.769 0.00 0.00 36.53 4.11
396 404 6.170675 TGTTCAACATTTTTCAAAAACCCG 57.829 33.333 0.00 0.00 0.00 5.28
397 405 5.701290 TGTTCAACATTTTTCAAAAACCCGT 59.299 32.000 0.00 0.00 0.00 5.28
398 406 6.204882 TGTTCAACATTTTTCAAAAACCCGTT 59.795 30.769 0.00 0.00 0.00 4.44
399 407 6.410243 TCAACATTTTTCAAAAACCCGTTC 57.590 33.333 0.00 0.00 0.00 3.95
400 408 5.932303 TCAACATTTTTCAAAAACCCGTTCA 59.068 32.000 0.00 0.00 0.00 3.18
401 409 6.426937 TCAACATTTTTCAAAAACCCGTTCAA 59.573 30.769 0.00 0.00 0.00 2.69
402 410 6.171932 ACATTTTTCAAAAACCCGTTCAAC 57.828 33.333 0.00 0.00 0.00 3.18
403 411 5.701290 ACATTTTTCAAAAACCCGTTCAACA 59.299 32.000 0.00 0.00 0.00 3.33
404 412 6.372937 ACATTTTTCAAAAACCCGTTCAACAT 59.627 30.769 0.00 0.00 0.00 2.71
405 413 6.803154 TTTTTCAAAAACCCGTTCAACATT 57.197 29.167 0.00 0.00 0.00 2.71
406 414 6.803154 TTTTCAAAAACCCGTTCAACATTT 57.197 29.167 0.00 0.00 0.00 2.32
407 415 6.803154 TTTCAAAAACCCGTTCAACATTTT 57.197 29.167 0.00 0.00 0.00 1.82
408 416 6.803154 TTCAAAAACCCGTTCAACATTTTT 57.197 29.167 2.50 2.50 33.81 1.94
463 471 9.868277 TGATCAACTGTTTTTCAAATACTTGTT 57.132 25.926 0.00 0.00 33.94 2.83
542 550 9.630098 AGTTGTTCAGCATATTTGAAATACTTG 57.370 29.630 0.00 0.00 36.41 3.16
543 551 9.410556 GTTGTTCAGCATATTTGAAATACTTGT 57.589 29.630 0.00 0.00 36.41 3.16
544 552 9.979578 TTGTTCAGCATATTTGAAATACTTGTT 57.020 25.926 0.00 0.00 36.41 2.83
545 553 9.624697 TGTTCAGCATATTTGAAATACTTGTTC 57.375 29.630 0.00 0.12 36.41 3.18
546 554 9.624697 GTTCAGCATATTTGAAATACTTGTTCA 57.375 29.630 0.00 0.00 36.41 3.18
650 658 3.893326 AAAATAATGCTGTGGCTTCCC 57.107 42.857 0.00 0.00 39.59 3.97
651 659 1.392589 AATAATGCTGTGGCTTCCCG 58.607 50.000 0.00 0.00 39.59 5.14
652 660 1.103398 ATAATGCTGTGGCTTCCCGC 61.103 55.000 0.00 0.00 42.13 6.13
688 696 3.782244 CGCACTCGCCACTTCAGC 61.782 66.667 0.00 0.00 33.11 4.26
695 703 2.811317 GCCACTTCAGCGAGTCCG 60.811 66.667 0.00 0.00 39.16 4.79
696 704 2.962569 CCACTTCAGCGAGTCCGA 59.037 61.111 0.00 0.00 38.22 4.55
697 705 1.289066 CCACTTCAGCGAGTCCGAA 59.711 57.895 0.00 0.00 38.22 4.30
698 706 0.734253 CCACTTCAGCGAGTCCGAAG 60.734 60.000 9.11 9.11 41.53 3.79
699 707 1.080434 ACTTCAGCGAGTCCGAAGC 60.080 57.895 10.16 0.00 39.82 3.86
700 708 1.214062 CTTCAGCGAGTCCGAAGCT 59.786 57.895 0.00 0.00 42.64 3.74
701 709 0.452184 CTTCAGCGAGTCCGAAGCTA 59.548 55.000 0.00 0.00 39.48 3.32
702 710 0.452184 TTCAGCGAGTCCGAAGCTAG 59.548 55.000 0.00 0.00 39.48 3.42
703 711 0.392595 TCAGCGAGTCCGAAGCTAGA 60.393 55.000 0.00 0.00 39.48 2.43
704 712 0.028770 CAGCGAGTCCGAAGCTAGAG 59.971 60.000 0.00 0.00 39.48 2.43
705 713 0.393267 AGCGAGTCCGAAGCTAGAGT 60.393 55.000 0.00 0.00 39.74 3.24
706 714 1.134461 AGCGAGTCCGAAGCTAGAGTA 60.134 52.381 0.00 0.00 39.74 2.59
707 715 1.262151 GCGAGTCCGAAGCTAGAGTAG 59.738 57.143 0.00 0.00 38.22 2.57
708 716 1.868498 CGAGTCCGAAGCTAGAGTAGG 59.132 57.143 0.00 0.00 38.22 3.18
709 717 2.223745 GAGTCCGAAGCTAGAGTAGGG 58.776 57.143 0.00 0.00 0.00 3.53
710 718 1.565288 AGTCCGAAGCTAGAGTAGGGT 59.435 52.381 0.00 0.00 0.00 4.34
711 719 1.677052 GTCCGAAGCTAGAGTAGGGTG 59.323 57.143 0.00 0.00 0.00 4.61
712 720 0.386113 CCGAAGCTAGAGTAGGGTGC 59.614 60.000 0.00 0.00 0.00 5.01
713 721 0.386113 CGAAGCTAGAGTAGGGTGCC 59.614 60.000 0.00 0.00 0.00 5.01
714 722 0.753867 GAAGCTAGAGTAGGGTGCCC 59.246 60.000 0.00 0.00 0.00 5.36
730 738 2.361610 CCTGTTTCAGGCGCCCAT 60.362 61.111 26.15 1.18 45.13 4.00
731 739 1.978617 CCTGTTTCAGGCGCCCATT 60.979 57.895 26.15 0.18 45.13 3.16
732 740 1.535204 CCTGTTTCAGGCGCCCATTT 61.535 55.000 26.15 0.00 45.13 2.32
733 741 0.388907 CTGTTTCAGGCGCCCATTTG 60.389 55.000 26.15 15.69 0.00 2.32
734 742 1.737735 GTTTCAGGCGCCCATTTGC 60.738 57.895 26.15 5.72 0.00 3.68
744 752 2.438868 GCCCATTTGCGAAAAGAACT 57.561 45.000 0.00 0.00 0.00 3.01
745 753 3.569250 GCCCATTTGCGAAAAGAACTA 57.431 42.857 0.00 0.00 0.00 2.24
746 754 4.110036 GCCCATTTGCGAAAAGAACTAT 57.890 40.909 0.00 0.00 0.00 2.12
747 755 5.243426 GCCCATTTGCGAAAAGAACTATA 57.757 39.130 0.00 0.00 0.00 1.31
748 756 5.646606 GCCCATTTGCGAAAAGAACTATAA 58.353 37.500 0.00 0.00 0.00 0.98
749 757 5.515270 GCCCATTTGCGAAAAGAACTATAAC 59.485 40.000 0.00 0.00 0.00 1.89
750 758 6.616947 CCCATTTGCGAAAAGAACTATAACA 58.383 36.000 0.00 0.00 0.00 2.41
751 759 6.747280 CCCATTTGCGAAAAGAACTATAACAG 59.253 38.462 0.00 0.00 0.00 3.16
752 760 6.747280 CCATTTGCGAAAAGAACTATAACAGG 59.253 38.462 0.00 0.00 0.00 4.00
753 761 4.939509 TGCGAAAAGAACTATAACAGGC 57.060 40.909 0.00 0.00 0.00 4.85
754 762 3.369756 TGCGAAAAGAACTATAACAGGCG 59.630 43.478 0.00 0.00 0.00 5.52
755 763 3.784525 GCGAAAAGAACTATAACAGGCGC 60.785 47.826 0.00 0.00 0.00 6.53
756 764 3.242316 CGAAAAGAACTATAACAGGCGCC 60.242 47.826 21.89 21.89 0.00 6.53
757 765 3.629142 AAAGAACTATAACAGGCGCCT 57.371 42.857 27.08 27.08 0.00 5.52
772 780 3.460648 GCCTGGAGCGTCAAATAGT 57.539 52.632 0.00 0.00 0.00 2.12
773 781 2.596904 GCCTGGAGCGTCAAATAGTA 57.403 50.000 0.00 0.00 0.00 1.82
774 782 2.901249 GCCTGGAGCGTCAAATAGTAA 58.099 47.619 0.00 0.00 0.00 2.24
775 783 3.267483 GCCTGGAGCGTCAAATAGTAAA 58.733 45.455 0.00 0.00 0.00 2.01
776 784 3.309954 GCCTGGAGCGTCAAATAGTAAAG 59.690 47.826 0.00 0.00 0.00 1.85
777 785 3.871594 CCTGGAGCGTCAAATAGTAAAGG 59.128 47.826 0.00 0.00 0.00 3.11
778 786 3.267483 TGGAGCGTCAAATAGTAAAGGC 58.733 45.455 0.00 0.00 0.00 4.35
779 787 2.612672 GGAGCGTCAAATAGTAAAGGCC 59.387 50.000 0.00 0.00 0.00 5.19
802 810 1.812571 CAAGTAGCACCCTCGCAAAAT 59.187 47.619 0.00 0.00 0.00 1.82
805 813 3.270877 AGTAGCACCCTCGCAAAATAAG 58.729 45.455 0.00 0.00 0.00 1.73
807 815 2.790433 AGCACCCTCGCAAAATAAGAA 58.210 42.857 0.00 0.00 0.00 2.52
808 816 2.749621 AGCACCCTCGCAAAATAAGAAG 59.250 45.455 0.00 0.00 0.00 2.85
813 832 5.048713 CACCCTCGCAAAATAAGAAGAAAGT 60.049 40.000 0.00 0.00 0.00 2.66
849 868 1.675641 AAGTAGCTTTGGGCAGGCG 60.676 57.895 0.00 0.00 44.79 5.52
912 931 3.267860 CCTGCGCGAATCTCCAGC 61.268 66.667 12.10 0.00 0.00 4.85
913 932 2.510012 CTGCGCGAATCTCCAGCA 60.510 61.111 12.10 0.00 36.34 4.41
914 933 2.510012 TGCGCGAATCTCCAGCAG 60.510 61.111 12.10 0.00 33.57 4.24
915 934 2.510238 GCGCGAATCTCCAGCAGT 60.510 61.111 12.10 0.00 0.00 4.40
916 935 1.226974 GCGCGAATCTCCAGCAGTA 60.227 57.895 12.10 0.00 0.00 2.74
917 936 1.211818 GCGCGAATCTCCAGCAGTAG 61.212 60.000 12.10 0.00 0.00 2.57
978 1003 2.756283 CTCCTCCTCTTCCGCGGT 60.756 66.667 27.15 0.00 0.00 5.68
979 1004 2.283676 TCCTCCTCTTCCGCGGTT 60.284 61.111 27.15 0.00 0.00 4.44
1092 1117 2.142292 ATCCCAACTCCGGCAAGCTT 62.142 55.000 0.00 0.00 0.00 3.74
1272 1297 0.618458 TGGTTAAGGCGCTGGAGAAT 59.382 50.000 7.64 0.00 0.00 2.40
1290 1315 0.387929 ATAACATGGGCGACGTCGAT 59.612 50.000 39.74 22.34 43.02 3.59
1296 1321 1.371389 GGGCGACGTCGATATGGTC 60.371 63.158 39.74 20.23 43.02 4.02
1383 1408 8.504005 CCAGTTTGTTTATTTGTCTGTAGGTAG 58.496 37.037 0.00 0.00 0.00 3.18
1433 1458 3.449737 TGGTTTACTAGTGATTCGGGAGG 59.550 47.826 5.39 0.00 0.00 4.30
1434 1459 3.450096 GGTTTACTAGTGATTCGGGAGGT 59.550 47.826 5.39 0.00 0.00 3.85
1558 1596 2.131972 GTGAGTCATGTGTTGTGCGTA 58.868 47.619 0.00 0.00 0.00 4.42
1576 1614 4.693566 TGCGTATCTTTTAGGTTCAGTTGG 59.306 41.667 0.00 0.00 0.00 3.77
1619 1657 1.913778 TGGTGATGTTGCTGATGCTT 58.086 45.000 0.00 0.00 40.48 3.91
1652 1690 5.385509 TGTCTGTAATGTTCATCTCGACA 57.614 39.130 0.00 0.00 0.00 4.35
1681 1719 7.652524 AAGCTCTGATTACTGATTAGACTGA 57.347 36.000 0.00 0.00 0.00 3.41
1747 1836 7.692908 TGGTACACGTAGTTTAAACAGTTAC 57.307 36.000 20.06 12.36 41.61 2.50
1789 1878 2.707791 TGCAGATAGGATGCTAAGGCTT 59.292 45.455 4.58 4.58 44.17 4.35
1795 1884 3.346146 AGGATGCTAAGGCTTAGGGTA 57.654 47.619 29.99 10.92 39.59 3.69
1893 2053 8.709386 TCTGTTTTGATTCTCTGAGCTATAAC 57.291 34.615 0.00 1.01 0.00 1.89
1894 2054 7.766278 TCTGTTTTGATTCTCTGAGCTATAACC 59.234 37.037 0.00 0.00 0.00 2.85
2128 2293 2.572104 TCCTAGGTTCCTTTTCTCTGCC 59.428 50.000 9.08 0.00 0.00 4.85
2195 2363 6.971184 GCTCTTGATAGATTTTTGTGATGGTG 59.029 38.462 0.00 0.00 0.00 4.17
2207 2375 2.705127 TGTGATGGTGGAGCTGCATATA 59.295 45.455 12.38 0.97 0.00 0.86
2208 2376 3.136260 TGTGATGGTGGAGCTGCATATAA 59.864 43.478 12.38 0.00 0.00 0.98
2209 2377 3.499918 GTGATGGTGGAGCTGCATATAAC 59.500 47.826 12.38 9.00 0.00 1.89
2210 2378 2.638480 TGGTGGAGCTGCATATAACC 57.362 50.000 12.38 8.11 0.00 2.85
2211 2379 2.126882 TGGTGGAGCTGCATATAACCT 58.873 47.619 12.38 0.00 0.00 3.50
2214 2382 3.181450 GGTGGAGCTGCATATAACCTTCT 60.181 47.826 12.38 0.00 0.00 2.85
2215 2383 4.061596 GTGGAGCTGCATATAACCTTCTC 58.938 47.826 12.38 0.00 0.00 2.87
2216 2384 3.711190 TGGAGCTGCATATAACCTTCTCA 59.289 43.478 2.72 0.00 0.00 3.27
2217 2385 4.349048 TGGAGCTGCATATAACCTTCTCAT 59.651 41.667 2.72 0.00 0.00 2.90
2218 2386 4.694509 GGAGCTGCATATAACCTTCTCATG 59.305 45.833 0.00 0.00 0.00 3.07
2219 2387 4.070716 AGCTGCATATAACCTTCTCATGC 58.929 43.478 1.02 0.00 41.81 4.06
2261 2429 3.118592 CCAGCTAGCTAGTTTGCCTAGTT 60.119 47.826 18.86 0.00 44.37 2.24
2308 2480 7.421599 ACGAGAATCAGTGTCATAACTCTATG 58.578 38.462 0.00 0.00 34.21 2.23
2338 2510 5.567037 ATGCTATAGTTACCAAGCCATGA 57.433 39.130 0.84 0.00 33.99 3.07
2356 2528 5.126061 GCCATGATAACCATTTGAGAAGTGT 59.874 40.000 0.00 0.00 31.94 3.55
2360 2532 7.615582 TGATAACCATTTGAGAAGTGTCATC 57.384 36.000 0.00 0.00 0.00 2.92
2384 2556 2.645297 TGCTTGGTACCCATTGAGGTAA 59.355 45.455 10.07 0.00 43.97 2.85
2427 2599 9.165035 CATGTTTAGAAAATTGCCATACCAAAT 57.835 29.630 0.00 0.00 0.00 2.32
2625 2812 2.923426 ATATGTGCCACTCGTGCCCG 62.923 60.000 0.00 0.00 0.00 6.13
2630 2817 2.171725 GCCACTCGTGCCCGTTATC 61.172 63.158 0.00 0.00 35.01 1.75
2644 2831 6.362283 GTGCCCGTTATCATTTTGTATTATGC 59.638 38.462 0.00 0.00 0.00 3.14
2703 2966 1.635663 GGGACGCGTTCATGACCAAG 61.636 60.000 21.18 0.00 0.00 3.61
2724 2987 1.345741 CATGAGTGCCGATGGACCTAT 59.654 52.381 0.00 0.00 0.00 2.57
2729 2992 2.505819 AGTGCCGATGGACCTATTTCTT 59.494 45.455 0.00 0.00 0.00 2.52
2831 3094 9.926158 TGTCATTTCTGCATATATTTGTTTTGT 57.074 25.926 0.00 0.00 0.00 2.83
2836 3099 9.979578 TTTCTGCATATATTTGTTTTGTCACTT 57.020 25.926 0.00 0.00 0.00 3.16
2837 3100 9.624697 TTCTGCATATATTTGTTTTGTCACTTC 57.375 29.630 0.00 0.00 0.00 3.01
2838 3101 8.791675 TCTGCATATATTTGTTTTGTCACTTCA 58.208 29.630 0.00 0.00 0.00 3.02
2839 3102 9.577110 CTGCATATATTTGTTTTGTCACTTCAT 57.423 29.630 0.00 0.00 0.00 2.57
2840 3103 9.926158 TGCATATATTTGTTTTGTCACTTCATT 57.074 25.926 0.00 0.00 0.00 2.57
2845 3108 6.773976 TTTGTTTTGTCACTTCATTCCTCT 57.226 33.333 0.00 0.00 0.00 3.69
2846 3109 5.756195 TGTTTTGTCACTTCATTCCTCTG 57.244 39.130 0.00 0.00 0.00 3.35
2847 3110 5.192927 TGTTTTGTCACTTCATTCCTCTGT 58.807 37.500 0.00 0.00 0.00 3.41
2848 3111 5.066375 TGTTTTGTCACTTCATTCCTCTGTG 59.934 40.000 0.00 0.00 0.00 3.66
2849 3112 4.422073 TTGTCACTTCATTCCTCTGTGT 57.578 40.909 0.00 0.00 0.00 3.72
2850 3113 3.732212 TGTCACTTCATTCCTCTGTGTG 58.268 45.455 0.00 0.00 0.00 3.82
2851 3114 2.481952 GTCACTTCATTCCTCTGTGTGC 59.518 50.000 0.00 0.00 0.00 4.57
2874 3137 3.888323 TGCCATCACTTATTTGTGTGTGT 59.112 39.130 0.00 0.00 38.90 3.72
2877 3140 4.261530 CCATCACTTATTTGTGTGTGTGCA 60.262 41.667 0.00 0.00 38.90 4.57
2878 3141 5.463286 CATCACTTATTTGTGTGTGTGCAT 58.537 37.500 0.00 0.00 38.90 3.96
2879 3142 4.857799 TCACTTATTTGTGTGTGTGCATG 58.142 39.130 0.00 0.00 38.90 4.06
2880 3143 4.337836 TCACTTATTTGTGTGTGTGCATGT 59.662 37.500 0.00 0.00 38.90 3.21
2881 3144 4.441744 CACTTATTTGTGTGTGTGCATGTG 59.558 41.667 0.00 0.00 33.61 3.21
2882 3145 4.097741 ACTTATTTGTGTGTGTGCATGTGT 59.902 37.500 0.00 0.00 0.00 3.72
3129 3392 7.451877 TGACTGAGAAGTTTACTCCTATTCTGT 59.548 37.037 0.00 0.00 33.95 3.41
3213 3478 1.081442 GCCGCCAACGAAGGAAAAG 60.081 57.895 0.00 0.00 43.93 2.27
3267 3532 7.863375 AGAGTGAAGCAGTATCGTAATATGAAC 59.137 37.037 0.00 0.00 0.00 3.18
3326 3591 4.023193 AGCTTGTGCATTAACTTGGTGTAC 60.023 41.667 0.00 0.00 42.74 2.90
3398 3663 7.395190 TGATACCATTTTGTCAAGATCTTGG 57.605 36.000 30.33 17.82 40.78 3.61
3436 3701 2.886382 GGCTCAGCTAAATTGCCCA 58.114 52.632 0.00 0.00 37.81 5.36
3440 3705 2.683742 GCTCAGCTAAATTGCCCACCTA 60.684 50.000 0.00 0.00 0.00 3.08
3442 3707 1.678101 CAGCTAAATTGCCCACCTAGC 59.322 52.381 0.00 0.00 36.13 3.42
3464 3729 0.176910 TGTCTGCTGTGGTTTGTCGA 59.823 50.000 0.00 0.00 0.00 4.20
3537 3802 2.031870 TGGCTACTACGATGACTGCAT 58.968 47.619 0.00 0.00 37.47 3.96
3613 3879 2.488153 GTTAAGGGCATCTCCAACACAC 59.512 50.000 0.00 0.00 36.21 3.82
3614 3880 0.251341 AAGGGCATCTCCAACACACC 60.251 55.000 0.00 0.00 36.21 4.16
3616 3882 1.380302 GGCATCTCCAACACACCCT 59.620 57.895 0.00 0.00 34.01 4.34
3618 3884 0.036732 GCATCTCCAACACACCCTCA 59.963 55.000 0.00 0.00 0.00 3.86
3619 3885 1.545428 GCATCTCCAACACACCCTCAA 60.545 52.381 0.00 0.00 0.00 3.02
3622 3888 2.650322 TCTCCAACACACCCTCAAAAC 58.350 47.619 0.00 0.00 0.00 2.43
3625 3893 0.738389 CAACACACCCTCAAAACGCT 59.262 50.000 0.00 0.00 0.00 5.07
3629 3897 1.283793 CACCCTCAAAACGCTGCAG 59.716 57.895 10.11 10.11 0.00 4.41
3663 3931 0.974010 GTGGGTGTCCGGACCTATGA 60.974 60.000 31.19 10.01 36.14 2.15
3666 3934 1.120530 GGTGTCCGGACCTATGACAT 58.879 55.000 31.19 0.00 40.75 3.06
3728 4000 3.324930 TGCTGCCCACCCTCTCTG 61.325 66.667 0.00 0.00 0.00 3.35
3826 4991 4.527509 AGAAGCGACTCTGATTTCTTGA 57.472 40.909 0.00 0.00 0.00 3.02
4165 5332 6.072112 TCTTCACTCCTTTTGCAATAACAC 57.928 37.500 0.00 0.00 0.00 3.32
4176 5343 7.869429 CCTTTTGCAATAACACTGAGATTTCTT 59.131 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.203013 CCGTTTCTCCCCTTCCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
1 2 0.404426 CCGTTTCTCCCCTTCCCTTT 59.596 55.000 0.00 0.00 0.00 3.11
2 3 1.498176 CCCGTTTCTCCCCTTCCCTT 61.498 60.000 0.00 0.00 0.00 3.95
3 4 1.923909 CCCGTTTCTCCCCTTCCCT 60.924 63.158 0.00 0.00 0.00 4.20
4 5 2.675371 CCCGTTTCTCCCCTTCCC 59.325 66.667 0.00 0.00 0.00 3.97
5 6 1.279749 ATCCCCGTTTCTCCCCTTCC 61.280 60.000 0.00 0.00 0.00 3.46
6 7 0.180642 GATCCCCGTTTCTCCCCTTC 59.819 60.000 0.00 0.00 0.00 3.46
7 8 1.623542 CGATCCCCGTTTCTCCCCTT 61.624 60.000 0.00 0.00 0.00 3.95
8 9 2.064581 CGATCCCCGTTTCTCCCCT 61.065 63.158 0.00 0.00 0.00 4.79
9 10 1.408453 ATCGATCCCCGTTTCTCCCC 61.408 60.000 0.00 0.00 39.75 4.81
10 11 0.033642 GATCGATCCCCGTTTCTCCC 59.966 60.000 14.76 0.00 39.75 4.30
11 12 1.000052 GAGATCGATCCCCGTTTCTCC 60.000 57.143 21.66 0.00 39.90 3.71
12 13 1.000052 GGAGATCGATCCCCGTTTCTC 60.000 57.143 21.66 10.52 42.34 2.87
13 14 1.041437 GGAGATCGATCCCCGTTTCT 58.959 55.000 21.66 0.69 39.75 2.52
14 15 0.318784 CGGAGATCGATCCCCGTTTC 60.319 60.000 32.99 18.19 42.39 2.78
15 16 1.740285 CGGAGATCGATCCCCGTTT 59.260 57.895 32.99 10.96 42.39 3.60
16 17 2.201022 CCGGAGATCGATCCCCGTT 61.201 63.158 36.32 14.76 45.38 4.44
17 18 2.597805 CCGGAGATCGATCCCCGT 60.598 66.667 36.32 15.12 45.38 5.28
18 19 2.597805 ACCGGAGATCGATCCCCG 60.598 66.667 34.01 34.01 46.25 5.73
19 20 2.276853 GGACCGGAGATCGATCCCC 61.277 68.421 21.66 18.63 42.43 4.81
20 21 2.276853 GGGACCGGAGATCGATCCC 61.277 68.421 21.66 19.55 42.43 3.85
21 22 2.276853 GGGGACCGGAGATCGATCC 61.277 68.421 21.66 12.80 40.86 3.36
37 38 1.811645 GCGCTAGCCTTCTCCTAGGG 61.812 65.000 9.46 0.00 44.23 3.53
55 56 1.884926 GAGACATAGGCGCAGTGGC 60.885 63.158 10.83 6.70 45.27 5.01
56 57 0.807667 GTGAGACATAGGCGCAGTGG 60.808 60.000 10.83 0.00 0.00 4.00
66 74 4.868171 GCCAACAACTTATCGTGAGACATA 59.132 41.667 0.00 0.00 46.97 2.29
73 81 1.136085 CCGTGCCAACAACTTATCGTG 60.136 52.381 0.00 0.00 0.00 4.35
74 82 1.153353 CCGTGCCAACAACTTATCGT 58.847 50.000 0.00 0.00 0.00 3.73
76 84 1.877443 ACACCGTGCCAACAACTTATC 59.123 47.619 0.00 0.00 0.00 1.75
77 85 1.606668 CACACCGTGCCAACAACTTAT 59.393 47.619 0.00 0.00 0.00 1.73
78 86 1.018148 CACACCGTGCCAACAACTTA 58.982 50.000 0.00 0.00 0.00 2.24
79 87 0.963355 ACACACCGTGCCAACAACTT 60.963 50.000 0.00 0.00 36.98 2.66
80 88 0.107606 TACACACCGTGCCAACAACT 60.108 50.000 0.00 0.00 36.98 3.16
81 89 0.028374 GTACACACCGTGCCAACAAC 59.972 55.000 0.00 0.00 36.98 3.32
82 90 0.107606 AGTACACACCGTGCCAACAA 60.108 50.000 0.00 0.00 36.98 2.83
83 91 0.107606 AAGTACACACCGTGCCAACA 60.108 50.000 0.00 0.00 36.98 3.33
84 92 0.584876 GAAGTACACACCGTGCCAAC 59.415 55.000 0.00 0.00 36.98 3.77
85 93 0.178301 TGAAGTACACACCGTGCCAA 59.822 50.000 0.00 0.00 36.98 4.52
86 94 1.823976 TGAAGTACACACCGTGCCA 59.176 52.632 0.00 0.00 36.98 4.92
87 95 4.762825 TGAAGTACACACCGTGCC 57.237 55.556 0.00 0.00 36.98 5.01
95 103 2.220133 ACGTCATTTGCGTGAAGTACAC 59.780 45.455 0.00 0.00 45.11 2.90
96 104 2.473609 GACGTCATTTGCGTGAAGTACA 59.526 45.455 11.55 0.00 43.04 2.90
97 105 2.470140 CGACGTCATTTGCGTGAAGTAC 60.470 50.000 17.16 0.00 43.04 2.73
98 106 1.717113 CGACGTCATTTGCGTGAAGTA 59.283 47.619 17.16 0.00 43.04 2.24
99 107 0.506932 CGACGTCATTTGCGTGAAGT 59.493 50.000 17.16 5.18 43.04 3.01
100 108 0.179250 CCGACGTCATTTGCGTGAAG 60.179 55.000 17.16 0.00 43.04 3.02
101 109 0.876777 ACCGACGTCATTTGCGTGAA 60.877 50.000 17.16 0.00 43.04 3.18
102 110 0.876777 AACCGACGTCATTTGCGTGA 60.877 50.000 17.16 0.00 43.04 4.35
103 111 0.041663 AAACCGACGTCATTTGCGTG 60.042 50.000 17.16 0.00 43.04 5.34
104 112 0.658897 AAAACCGACGTCATTTGCGT 59.341 45.000 17.16 0.00 45.86 5.24
105 113 1.706597 GAAAAACCGACGTCATTTGCG 59.293 47.619 17.16 0.09 0.00 4.85
106 114 2.048498 GGAAAAACCGACGTCATTTGC 58.952 47.619 17.16 11.46 0.00 3.68
107 115 3.341857 TGGAAAAACCGACGTCATTTG 57.658 42.857 17.16 3.12 42.61 2.32
108 116 3.305064 CCATGGAAAAACCGACGTCATTT 60.305 43.478 17.16 12.32 42.61 2.32
109 117 2.227865 CCATGGAAAAACCGACGTCATT 59.772 45.455 17.16 6.29 42.61 2.57
110 118 1.810151 CCATGGAAAAACCGACGTCAT 59.190 47.619 17.16 0.00 42.61 3.06
111 119 1.231221 CCATGGAAAAACCGACGTCA 58.769 50.000 17.16 0.00 42.61 4.35
112 120 1.232119 ACCATGGAAAAACCGACGTC 58.768 50.000 21.47 5.18 42.61 4.34
113 121 1.682740 AACCATGGAAAAACCGACGT 58.317 45.000 21.47 0.00 42.61 4.34
114 122 2.785713 AAACCATGGAAAAACCGACG 57.214 45.000 21.47 0.00 42.61 5.12
115 123 4.048241 TGAAAACCATGGAAAAACCGAC 57.952 40.909 21.47 0.50 42.61 4.79
116 124 4.626042 CATGAAAACCATGGAAAAACCGA 58.374 39.130 21.47 0.00 46.85 4.69
117 125 4.988708 CATGAAAACCATGGAAAAACCG 57.011 40.909 21.47 0.00 46.85 4.44
188 196 9.418045 AGAAGAAAAATTCGAACAAAGAACAAA 57.582 25.926 0.00 0.00 34.27 2.83
189 197 8.980143 AGAAGAAAAATTCGAACAAAGAACAA 57.020 26.923 0.00 0.00 34.27 2.83
190 198 8.458843 AGAGAAGAAAAATTCGAACAAAGAACA 58.541 29.630 0.00 0.00 34.27 3.18
191 199 8.842942 AGAGAAGAAAAATTCGAACAAAGAAC 57.157 30.769 0.00 0.00 34.27 3.01
264 272 9.487790 CAATGAAACAAAATAAGCCTAAGGAAA 57.512 29.630 0.00 0.00 0.00 3.13
265 273 8.646900 ACAATGAAACAAAATAAGCCTAAGGAA 58.353 29.630 0.00 0.00 0.00 3.36
266 274 8.189119 ACAATGAAACAAAATAAGCCTAAGGA 57.811 30.769 0.00 0.00 0.00 3.36
267 275 8.831715 AACAATGAAACAAAATAAGCCTAAGG 57.168 30.769 0.00 0.00 0.00 2.69
270 278 9.823647 TGAAAACAATGAAACAAAATAAGCCTA 57.176 25.926 0.00 0.00 0.00 3.93
271 279 8.611757 GTGAAAACAATGAAACAAAATAAGCCT 58.388 29.630 0.00 0.00 0.00 4.58
272 280 8.611757 AGTGAAAACAATGAAACAAAATAAGCC 58.388 29.630 0.00 0.00 0.00 4.35
273 281 9.986833 AAGTGAAAACAATGAAACAAAATAAGC 57.013 25.926 0.00 0.00 0.00 3.09
299 307 8.409371 ACAAGAAAAACAAAGAAAAGGCAAAAA 58.591 25.926 0.00 0.00 0.00 1.94
300 308 7.935520 ACAAGAAAAACAAAGAAAAGGCAAAA 58.064 26.923 0.00 0.00 0.00 2.44
301 309 7.503521 ACAAGAAAAACAAAGAAAAGGCAAA 57.496 28.000 0.00 0.00 0.00 3.68
302 310 7.503521 AACAAGAAAAACAAAGAAAAGGCAA 57.496 28.000 0.00 0.00 0.00 4.52
303 311 7.503521 AAACAAGAAAAACAAAGAAAAGGCA 57.496 28.000 0.00 0.00 0.00 4.75
304 312 8.795786 AAAAACAAGAAAAACAAAGAAAAGGC 57.204 26.923 0.00 0.00 0.00 4.35
361 369 9.713740 GAAAAATGTTGAACATGTATTTGCAAA 57.286 25.926 15.44 15.44 37.97 3.68
362 370 8.886719 TGAAAAATGTTGAACATGTATTTGCAA 58.113 25.926 12.09 0.00 37.97 4.08
363 371 8.429493 TGAAAAATGTTGAACATGTATTTGCA 57.571 26.923 12.09 10.52 37.97 4.08
364 372 9.713740 TTTGAAAAATGTTGAACATGTATTTGC 57.286 25.926 12.09 8.09 37.97 3.68
369 377 8.669243 GGGTTTTTGAAAAATGTTGAACATGTA 58.331 29.630 12.09 0.00 37.97 2.29
370 378 7.534282 GGGTTTTTGAAAAATGTTGAACATGT 58.466 30.769 12.09 2.86 37.97 3.21
371 379 6.686253 CGGGTTTTTGAAAAATGTTGAACATG 59.314 34.615 12.09 0.00 37.97 3.21
372 380 6.372937 ACGGGTTTTTGAAAAATGTTGAACAT 59.627 30.769 4.72 4.72 41.31 2.71
373 381 5.701290 ACGGGTTTTTGAAAAATGTTGAACA 59.299 32.000 6.35 0.00 0.00 3.18
374 382 6.171932 ACGGGTTTTTGAAAAATGTTGAAC 57.828 33.333 6.35 0.00 0.00 3.18
375 383 6.426937 TGAACGGGTTTTTGAAAAATGTTGAA 59.573 30.769 17.24 7.87 0.00 2.69
376 384 5.932303 TGAACGGGTTTTTGAAAAATGTTGA 59.068 32.000 17.24 10.32 0.00 3.18
377 385 6.170675 TGAACGGGTTTTTGAAAAATGTTG 57.829 33.333 17.24 7.79 0.00 3.33
378 386 6.204882 TGTTGAACGGGTTTTTGAAAAATGTT 59.795 30.769 6.35 11.22 0.00 2.71
379 387 5.701290 TGTTGAACGGGTTTTTGAAAAATGT 59.299 32.000 6.35 3.64 0.00 2.71
380 388 6.170675 TGTTGAACGGGTTTTTGAAAAATG 57.829 33.333 6.35 3.05 0.00 2.32
381 389 6.993786 ATGTTGAACGGGTTTTTGAAAAAT 57.006 29.167 6.35 0.00 0.00 1.82
382 390 6.803154 AATGTTGAACGGGTTTTTGAAAAA 57.197 29.167 0.00 0.00 0.00 1.94
383 391 6.803154 AAATGTTGAACGGGTTTTTGAAAA 57.197 29.167 0.00 0.00 0.00 2.29
384 392 6.803154 AAAATGTTGAACGGGTTTTTGAAA 57.197 29.167 0.00 0.00 0.00 2.69
385 393 6.803154 AAAAATGTTGAACGGGTTTTTGAA 57.197 29.167 13.79 0.00 32.56 2.69
437 445 9.868277 AACAAGTATTTGAAAAACAGTTGATCA 57.132 25.926 4.81 0.00 37.73 2.92
516 524 9.630098 CAAGTATTTCAAATATGCTGAACAACT 57.370 29.630 0.00 4.94 32.98 3.16
517 525 9.410556 ACAAGTATTTCAAATATGCTGAACAAC 57.589 29.630 0.00 3.23 32.61 3.32
518 526 9.979578 AACAAGTATTTCAAATATGCTGAACAA 57.020 25.926 0.00 0.00 32.61 2.83
519 527 9.624697 GAACAAGTATTTCAAATATGCTGAACA 57.375 29.630 0.00 0.00 32.61 3.18
520 528 9.624697 TGAACAAGTATTTCAAATATGCTGAAC 57.375 29.630 0.00 0.00 32.61 3.18
629 637 3.368323 CGGGAAGCCACAGCATTATTTTT 60.368 43.478 0.00 0.00 43.56 1.94
630 638 2.166254 CGGGAAGCCACAGCATTATTTT 59.834 45.455 0.00 0.00 43.56 1.82
631 639 1.750778 CGGGAAGCCACAGCATTATTT 59.249 47.619 0.00 0.00 43.56 1.40
632 640 1.392589 CGGGAAGCCACAGCATTATT 58.607 50.000 0.00 0.00 43.56 1.40
633 641 1.103398 GCGGGAAGCCACAGCATTAT 61.103 55.000 0.00 0.00 43.56 1.28
634 642 1.748879 GCGGGAAGCCACAGCATTA 60.749 57.895 0.00 0.00 43.56 1.90
635 643 3.064324 GCGGGAAGCCACAGCATT 61.064 61.111 0.00 0.00 43.56 3.56
671 679 3.782244 GCTGAAGTGGCGAGTGCG 61.782 66.667 0.00 0.00 44.10 5.34
678 686 2.765250 TTCGGACTCGCTGAAGTGGC 62.765 60.000 0.00 0.00 36.97 5.01
679 687 1.289066 TTCGGACTCGCTGAAGTGG 59.711 57.895 0.00 0.00 36.97 4.00
680 688 4.966005 TTCGGACTCGCTGAAGTG 57.034 55.556 0.00 0.00 36.97 3.16
683 691 0.452184 CTAGCTTCGGACTCGCTGAA 59.548 55.000 0.00 0.00 39.54 3.02
684 692 0.392595 TCTAGCTTCGGACTCGCTGA 60.393 55.000 0.00 0.00 35.33 4.26
685 693 0.028770 CTCTAGCTTCGGACTCGCTG 59.971 60.000 0.00 0.00 35.33 5.18
686 694 0.393267 ACTCTAGCTTCGGACTCGCT 60.393 55.000 0.00 0.00 37.77 4.93
687 695 1.262151 CTACTCTAGCTTCGGACTCGC 59.738 57.143 0.00 0.00 36.13 5.03
688 696 1.868498 CCTACTCTAGCTTCGGACTCG 59.132 57.143 0.00 0.00 37.82 4.18
689 697 2.223745 CCCTACTCTAGCTTCGGACTC 58.776 57.143 0.00 0.00 0.00 3.36
690 698 1.565288 ACCCTACTCTAGCTTCGGACT 59.435 52.381 0.00 0.00 0.00 3.85
691 699 1.677052 CACCCTACTCTAGCTTCGGAC 59.323 57.143 0.00 0.00 0.00 4.79
692 700 2.022754 GCACCCTACTCTAGCTTCGGA 61.023 57.143 0.00 0.00 0.00 4.55
693 701 0.386113 GCACCCTACTCTAGCTTCGG 59.614 60.000 0.00 0.00 0.00 4.30
694 702 0.386113 GGCACCCTACTCTAGCTTCG 59.614 60.000 0.00 0.00 0.00 3.79
714 722 0.388907 CAAATGGGCGCCTGAAACAG 60.389 55.000 28.56 6.93 0.00 3.16
715 723 1.664873 CAAATGGGCGCCTGAAACA 59.335 52.632 28.56 16.15 0.00 2.83
716 724 1.737735 GCAAATGGGCGCCTGAAAC 60.738 57.895 28.56 9.87 0.00 2.78
717 725 2.656055 GCAAATGGGCGCCTGAAA 59.344 55.556 28.56 10.38 0.00 2.69
725 733 2.438868 AGTTCTTTTCGCAAATGGGC 57.561 45.000 0.00 0.00 0.00 5.36
726 734 6.616947 TGTTATAGTTCTTTTCGCAAATGGG 58.383 36.000 0.00 0.00 0.00 4.00
727 735 6.747280 CCTGTTATAGTTCTTTTCGCAAATGG 59.253 38.462 0.00 0.00 0.00 3.16
728 736 6.251376 GCCTGTTATAGTTCTTTTCGCAAATG 59.749 38.462 0.00 0.00 0.00 2.32
729 737 6.322491 GCCTGTTATAGTTCTTTTCGCAAAT 58.678 36.000 0.00 0.00 0.00 2.32
730 738 5.615984 CGCCTGTTATAGTTCTTTTCGCAAA 60.616 40.000 0.00 0.00 0.00 3.68
731 739 4.142988 CGCCTGTTATAGTTCTTTTCGCAA 60.143 41.667 0.00 0.00 0.00 4.85
732 740 3.369756 CGCCTGTTATAGTTCTTTTCGCA 59.630 43.478 0.00 0.00 0.00 5.10
733 741 3.784525 GCGCCTGTTATAGTTCTTTTCGC 60.785 47.826 0.00 0.00 0.00 4.70
734 742 3.242316 GGCGCCTGTTATAGTTCTTTTCG 60.242 47.826 22.15 0.00 0.00 3.46
735 743 3.939592 AGGCGCCTGTTATAGTTCTTTTC 59.060 43.478 32.33 0.00 0.00 2.29
736 744 3.689649 CAGGCGCCTGTTATAGTTCTTTT 59.310 43.478 42.09 8.17 39.10 2.27
737 745 3.270877 CAGGCGCCTGTTATAGTTCTTT 58.729 45.455 42.09 8.91 39.10 2.52
738 746 2.420129 CCAGGCGCCTGTTATAGTTCTT 60.420 50.000 44.92 13.01 42.15 2.52
739 747 1.139058 CCAGGCGCCTGTTATAGTTCT 59.861 52.381 44.92 13.23 42.15 3.01
740 748 1.138266 TCCAGGCGCCTGTTATAGTTC 59.862 52.381 44.92 9.73 42.15 3.01
741 749 1.139058 CTCCAGGCGCCTGTTATAGTT 59.861 52.381 44.92 14.60 42.15 2.24
742 750 0.753262 CTCCAGGCGCCTGTTATAGT 59.247 55.000 44.92 15.40 42.15 2.12
743 751 0.601311 GCTCCAGGCGCCTGTTATAG 60.601 60.000 44.92 35.33 42.15 1.31
744 752 1.445942 GCTCCAGGCGCCTGTTATA 59.554 57.895 44.92 29.33 42.15 0.98
745 753 2.190578 GCTCCAGGCGCCTGTTAT 59.809 61.111 44.92 17.83 42.15 1.89
754 762 2.596904 TACTATTTGACGCTCCAGGC 57.403 50.000 0.00 0.00 37.64 4.85
755 763 3.871594 CCTTTACTATTTGACGCTCCAGG 59.128 47.826 0.00 0.00 0.00 4.45
756 764 3.309954 GCCTTTACTATTTGACGCTCCAG 59.690 47.826 0.00 0.00 0.00 3.86
757 765 3.267483 GCCTTTACTATTTGACGCTCCA 58.733 45.455 0.00 0.00 0.00 3.86
758 766 2.612672 GGCCTTTACTATTTGACGCTCC 59.387 50.000 0.00 0.00 0.00 4.70
759 767 2.612672 GGGCCTTTACTATTTGACGCTC 59.387 50.000 0.84 0.00 0.00 5.03
760 768 2.026636 TGGGCCTTTACTATTTGACGCT 60.027 45.455 4.53 0.00 0.00 5.07
761 769 2.096980 GTGGGCCTTTACTATTTGACGC 59.903 50.000 4.53 0.00 0.00 5.19
762 770 3.340034 TGTGGGCCTTTACTATTTGACG 58.660 45.455 4.53 0.00 0.00 4.35
763 771 4.765339 ACTTGTGGGCCTTTACTATTTGAC 59.235 41.667 4.53 0.00 0.00 3.18
764 772 4.993028 ACTTGTGGGCCTTTACTATTTGA 58.007 39.130 4.53 0.00 0.00 2.69
765 773 5.163652 GCTACTTGTGGGCCTTTACTATTTG 60.164 44.000 4.53 0.00 0.00 2.32
766 774 4.948004 GCTACTTGTGGGCCTTTACTATTT 59.052 41.667 4.53 0.00 0.00 1.40
767 775 4.018779 TGCTACTTGTGGGCCTTTACTATT 60.019 41.667 4.53 0.00 0.00 1.73
768 776 3.521937 TGCTACTTGTGGGCCTTTACTAT 59.478 43.478 4.53 0.00 0.00 2.12
769 777 2.907696 TGCTACTTGTGGGCCTTTACTA 59.092 45.455 4.53 0.00 0.00 1.82
770 778 1.702957 TGCTACTTGTGGGCCTTTACT 59.297 47.619 4.53 0.00 0.00 2.24
771 779 1.810755 GTGCTACTTGTGGGCCTTTAC 59.189 52.381 4.53 0.00 0.00 2.01
772 780 1.271707 GGTGCTACTTGTGGGCCTTTA 60.272 52.381 4.53 0.00 0.00 1.85
773 781 0.539669 GGTGCTACTTGTGGGCCTTT 60.540 55.000 4.53 0.00 0.00 3.11
774 782 1.074951 GGTGCTACTTGTGGGCCTT 59.925 57.895 4.53 0.00 0.00 4.35
775 783 2.757077 GGTGCTACTTGTGGGCCT 59.243 61.111 4.53 0.00 0.00 5.19
776 784 2.361230 GGGTGCTACTTGTGGGCC 60.361 66.667 0.00 0.00 0.00 5.80
777 785 1.377333 GAGGGTGCTACTTGTGGGC 60.377 63.158 0.00 0.00 0.00 5.36
778 786 1.079127 CGAGGGTGCTACTTGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
779 787 1.741770 GCGAGGGTGCTACTTGTGG 60.742 63.158 0.00 0.00 0.00 4.17
823 842 3.244735 TGCCCAAAGCTACTTGTGACATA 60.245 43.478 0.00 0.00 44.23 2.29
832 851 2.045926 CGCCTGCCCAAAGCTACT 60.046 61.111 0.00 0.00 44.23 2.57
871 890 4.314440 TGTCTGCTCGGCCGCTTT 62.314 61.111 23.51 0.00 0.00 3.51
892 911 2.819595 GGAGATTCGCGCAGGCAA 60.820 61.111 8.75 0.00 39.92 4.52
912 931 2.356844 GGCCTTTAACCCTTCCCTACTG 60.357 54.545 0.00 0.00 0.00 2.74
913 932 1.921049 GGCCTTTAACCCTTCCCTACT 59.079 52.381 0.00 0.00 0.00 2.57
914 933 1.407851 CGGCCTTTAACCCTTCCCTAC 60.408 57.143 0.00 0.00 0.00 3.18
915 934 0.913924 CGGCCTTTAACCCTTCCCTA 59.086 55.000 0.00 0.00 0.00 3.53
916 935 1.689412 CGGCCTTTAACCCTTCCCT 59.311 57.895 0.00 0.00 0.00 4.20
917 936 1.379443 CCGGCCTTTAACCCTTCCC 60.379 63.158 0.00 0.00 0.00 3.97
1092 1117 3.350612 GGCGCGTTGTGGTGCTTA 61.351 61.111 8.43 0.00 42.86 3.09
1119 1144 4.029186 CGCTTGCGCTTGCCAGAA 62.029 61.111 9.73 0.00 38.03 3.02
1189 1214 1.916181 CCACCAGGGAAATCAGTAGGT 59.084 52.381 0.00 0.00 40.01 3.08
1272 1297 1.023502 TATCGACGTCGCCCATGTTA 58.976 50.000 32.19 13.58 39.60 2.41
1290 1315 3.701542 CTGTACCTTCAGCAGAGACCATA 59.298 47.826 0.00 0.00 32.39 2.74
1433 1458 3.445096 ACATCTAGAGCAAATGGGCAAAC 59.555 43.478 0.00 0.00 35.83 2.93
1434 1459 3.444742 CACATCTAGAGCAAATGGGCAAA 59.555 43.478 0.00 0.00 35.83 3.68
1558 1596 5.319043 TGGTCCAACTGAACCTAAAAGAT 57.681 39.130 0.00 0.00 0.00 2.40
1619 1657 6.039159 TGAACATTACAGACAACATCAAAGCA 59.961 34.615 0.00 0.00 0.00 3.91
1676 1714 9.935241 ACTGACAACCATTATATCATATCAGTC 57.065 33.333 0.00 0.00 38.92 3.51
1747 1836 5.221342 TGCAACACCAAATTTAACTGGTAGG 60.221 40.000 0.00 0.00 44.30 3.18
1996 2157 5.682943 GGCACCAGCGTATATTCAATTAA 57.317 39.130 0.00 0.00 43.41 1.40
2162 2327 9.860898 ACAAAAATCTATCAAGAGCAAAATACC 57.139 29.630 0.00 0.00 34.49 2.73
2195 2363 4.342862 TGAGAAGGTTATATGCAGCTCC 57.657 45.455 0.00 0.00 0.00 4.70
2207 2375 2.154462 CGGAACTTGCATGAGAAGGTT 58.846 47.619 6.60 0.00 0.00 3.50
2208 2376 1.347707 TCGGAACTTGCATGAGAAGGT 59.652 47.619 6.60 0.00 0.00 3.50
2209 2377 1.734465 GTCGGAACTTGCATGAGAAGG 59.266 52.381 6.60 0.00 0.00 3.46
2210 2378 2.693069 AGTCGGAACTTGCATGAGAAG 58.307 47.619 6.60 0.00 28.74 2.85
2211 2379 2.839486 AGTCGGAACTTGCATGAGAA 57.161 45.000 6.60 0.00 28.74 2.87
2214 2382 3.678056 AACTAGTCGGAACTTGCATGA 57.322 42.857 6.60 0.00 36.92 3.07
2215 2383 4.929808 ACTAAACTAGTCGGAACTTGCATG 59.070 41.667 0.00 0.00 36.92 4.06
2216 2384 5.148651 ACTAAACTAGTCGGAACTTGCAT 57.851 39.130 0.00 0.00 36.92 3.96
2217 2385 4.553323 GACTAAACTAGTCGGAACTTGCA 58.447 43.478 0.00 0.00 44.90 4.08
2261 2429 9.622004 CTCGTTTCTTCTTGAAGTACAGTTATA 57.378 33.333 9.80 0.00 35.89 0.98
2273 2445 5.601662 ACACTGATTCTCGTTTCTTCTTGA 58.398 37.500 0.00 0.00 0.00 3.02
2285 2457 9.029243 CAACATAGAGTTATGACACTGATTCTC 57.971 37.037 0.00 0.00 39.22 2.87
2308 2480 6.967199 GCTTGGTAACTATAGCATTCAACAAC 59.033 38.462 0.00 0.00 39.15 3.32
2338 2510 9.334947 CATAGATGACACTTCTCAAATGGTTAT 57.665 33.333 0.00 0.00 0.00 1.89
2427 2599 3.483808 TGATAATCCACGGCAATGCTA 57.516 42.857 4.82 0.00 0.00 3.49
2428 2600 2.346766 TGATAATCCACGGCAATGCT 57.653 45.000 4.82 0.00 0.00 3.79
2630 2817 8.124199 GCAAAATCAAGGGCATAATACAAAATG 58.876 33.333 0.00 0.00 0.00 2.32
2644 2831 6.819649 ACATCATTATGTTGCAAAATCAAGGG 59.180 34.615 5.08 0.00 44.07 3.95
2679 2942 0.604073 TCATGAACGCGTCCCAGTTA 59.396 50.000 14.44 0.00 0.00 2.24
2680 2943 0.949105 GTCATGAACGCGTCCCAGTT 60.949 55.000 14.44 0.00 0.00 3.16
2724 2987 4.012374 CCTCCATAAGCAGCAGAAAGAAA 58.988 43.478 0.00 0.00 0.00 2.52
2729 2992 1.583556 TCCCTCCATAAGCAGCAGAA 58.416 50.000 0.00 0.00 0.00 3.02
2828 3091 4.129380 CACACAGAGGAATGAAGTGACAA 58.871 43.478 0.00 0.00 34.20 3.18
2829 3092 3.732212 CACACAGAGGAATGAAGTGACA 58.268 45.455 0.00 0.00 34.20 3.58
2830 3093 2.481952 GCACACAGAGGAATGAAGTGAC 59.518 50.000 0.00 0.00 34.20 3.67
2831 3094 2.369860 AGCACACAGAGGAATGAAGTGA 59.630 45.455 0.00 0.00 34.20 3.41
2832 3095 2.483106 CAGCACACAGAGGAATGAAGTG 59.517 50.000 0.00 0.00 34.88 3.16
2833 3096 2.775890 CAGCACACAGAGGAATGAAGT 58.224 47.619 0.00 0.00 0.00 3.01
2834 3097 1.467734 GCAGCACACAGAGGAATGAAG 59.532 52.381 0.00 0.00 0.00 3.02
2835 3098 1.527034 GCAGCACACAGAGGAATGAA 58.473 50.000 0.00 0.00 0.00 2.57
2836 3099 0.321919 GGCAGCACACAGAGGAATGA 60.322 55.000 0.00 0.00 0.00 2.57
2837 3100 0.607217 TGGCAGCACACAGAGGAATG 60.607 55.000 0.00 0.00 0.00 2.67
2838 3101 0.330604 ATGGCAGCACACAGAGGAAT 59.669 50.000 0.00 0.00 0.00 3.01
2839 3102 0.321919 GATGGCAGCACACAGAGGAA 60.322 55.000 0.00 0.00 0.00 3.36
2840 3103 1.297689 GATGGCAGCACACAGAGGA 59.702 57.895 0.00 0.00 0.00 3.71
2841 3104 1.002990 TGATGGCAGCACACAGAGG 60.003 57.895 0.00 0.00 0.00 3.69
2842 3105 0.321387 AGTGATGGCAGCACACAGAG 60.321 55.000 34.15 0.00 38.70 3.35
2843 3106 0.109153 AAGTGATGGCAGCACACAGA 59.891 50.000 34.15 0.00 38.70 3.41
2844 3107 1.812235 TAAGTGATGGCAGCACACAG 58.188 50.000 34.15 0.00 38.70 3.66
2845 3108 2.495155 ATAAGTGATGGCAGCACACA 57.505 45.000 34.15 22.47 38.70 3.72
2846 3109 3.057315 ACAAATAAGTGATGGCAGCACAC 60.057 43.478 34.15 22.35 38.70 3.82
2847 3110 3.057386 CACAAATAAGTGATGGCAGCACA 60.057 43.478 34.15 17.76 42.05 4.57
2848 3111 3.057315 ACACAAATAAGTGATGGCAGCAC 60.057 43.478 27.28 27.28 42.05 4.40
2849 3112 3.057386 CACACAAATAAGTGATGGCAGCA 60.057 43.478 0.00 0.00 42.05 4.41
2850 3113 3.057315 ACACACAAATAAGTGATGGCAGC 60.057 43.478 0.00 0.00 42.05 5.25
2851 3114 4.022935 ACACACACAAATAAGTGATGGCAG 60.023 41.667 0.57 0.00 42.05 4.85
2887 3150 0.390340 ACTGCAATGATGAGCGACGT 60.390 50.000 0.00 0.00 0.00 4.34
2935 3198 0.179179 GCAGTTTCCGAAGATGCTGC 60.179 55.000 10.75 10.82 40.47 5.25
3054 3317 6.816136 ACATATCGGTGTCTGATGTATCAAA 58.184 36.000 1.84 0.00 36.18 2.69
3066 3329 1.134521 TGGGAGCAACATATCGGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
3129 3392 5.652014 AGTGAATCTTTCAACCAGACAAACA 59.348 36.000 0.00 0.00 42.15 2.83
3267 3532 0.600557 TTGCTTGTGCCCCATAAACG 59.399 50.000 0.00 0.00 38.71 3.60
3293 3558 4.808414 AATGCACAAGCTCTAGTACTGA 57.192 40.909 5.39 0.22 42.74 3.41
3346 3611 8.891671 AAGAAAACCGTGTATTCAACTACTTA 57.108 30.769 0.00 0.00 0.00 2.24
3359 3624 3.071892 TGGTATCAGGAAGAAAACCGTGT 59.928 43.478 0.00 0.00 38.54 4.49
3398 3663 3.066064 GCCCAATTCAAACCAAACCAAAC 59.934 43.478 0.00 0.00 0.00 2.93
3436 3701 0.319728 CACAGCAGACACAGCTAGGT 59.680 55.000 0.00 0.00 41.14 3.08
3440 3705 0.107017 AAACCACAGCAGACACAGCT 60.107 50.000 0.00 0.00 44.62 4.24
3442 3707 1.331756 GACAAACCACAGCAGACACAG 59.668 52.381 0.00 0.00 0.00 3.66
3509 3774 5.413213 AGTCATCGTAGTAGCCATATCTGAC 59.587 44.000 0.00 0.00 0.00 3.51
3613 3879 1.576421 GTCTGCAGCGTTTTGAGGG 59.424 57.895 9.47 0.00 0.00 4.30
3614 3880 1.205064 CGTCTGCAGCGTTTTGAGG 59.795 57.895 18.43 0.00 0.00 3.86
3616 3882 1.495584 GGACGTCTGCAGCGTTTTGA 61.496 55.000 28.11 1.81 43.04 2.69
3618 3884 2.594962 CGGACGTCTGCAGCGTTTT 61.595 57.895 28.11 12.74 43.04 2.43
3619 3885 3.036084 CGGACGTCTGCAGCGTTT 61.036 61.111 28.11 13.33 43.04 3.60
3639 3907 2.109387 TCCGGACACCCACAAACG 59.891 61.111 0.00 0.00 0.00 3.60
3663 3931 2.032620 GGATGTCGGAGTCCTACATGT 58.967 52.381 28.79 11.30 34.09 3.21
3666 3934 1.283905 TGAGGATGTCGGAGTCCTACA 59.716 52.381 18.08 18.08 44.70 2.74
3711 3983 3.324930 CAGAGAGGGTGGGCAGCA 61.325 66.667 0.00 0.00 0.00 4.41
3712 3984 3.322318 GACAGAGAGGGTGGGCAGC 62.322 68.421 0.00 0.00 0.00 5.25
3715 3987 2.531483 TAGGGACAGAGAGGGTGGGC 62.531 65.000 0.00 0.00 0.00 5.36
3716 3988 0.266152 ATAGGGACAGAGAGGGTGGG 59.734 60.000 0.00 0.00 0.00 4.61
3717 3989 1.062886 TCATAGGGACAGAGAGGGTGG 60.063 57.143 0.00 0.00 0.00 4.61
3719 3991 2.463047 GTCATAGGGACAGAGAGGGT 57.537 55.000 0.00 0.00 46.19 4.34
3728 4000 1.568504 TGGACCACAGTCATAGGGAC 58.431 55.000 0.00 0.00 45.48 4.46
3826 4991 6.127338 GGGATTTAGGCAAACAAGCTTTATCT 60.127 38.462 0.00 0.00 34.17 1.98
3894 5059 8.025445 ACTTGTGCAAATATTTCATCAGAAGAC 58.975 33.333 23.48 6.02 34.71 3.01
4165 5332 6.420008 CCAAAACTGCTGAAAAGAAATCTCAG 59.580 38.462 0.00 0.00 39.69 3.35
4176 5343 2.499289 TCCAAAGCCAAAACTGCTGAAA 59.501 40.909 0.00 0.00 39.48 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.