Multiple sequence alignment - TraesCS6B01G244800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G244800 chr6B 100.000 2752 0 0 4180 6931 437165597 437162846 0.000000e+00 5083.0
1 TraesCS6B01G244800 chr6B 100.000 1904 0 0 1 1904 437169776 437167873 0.000000e+00 3517.0
2 TraesCS6B01G244800 chr6B 100.000 1555 0 0 2271 3825 437167506 437165952 0.000000e+00 2872.0
3 TraesCS6B01G244800 chr6B 100.000 558 0 0 7310 7867 437162467 437161910 0.000000e+00 1031.0
4 TraesCS6B01G244800 chr6B 84.746 59 6 3 4819 4875 277631041 277631098 1.000000e-03 56.5
5 TraesCS6B01G244800 chr6D 92.657 1961 52 30 1 1904 275164758 275162833 0.000000e+00 2739.0
6 TraesCS6B01G244800 chr6D 89.470 1415 113 23 2388 3780 275162699 275161299 0.000000e+00 1755.0
7 TraesCS6B01G244800 chr6D 91.381 1195 59 18 5485 6639 275160192 275159002 0.000000e+00 1596.0
8 TraesCS6B01G244800 chr6D 91.413 559 46 2 7311 7867 275158592 275158034 0.000000e+00 765.0
9 TraesCS6B01G244800 chr6D 85.880 602 36 13 4881 5455 275161066 275160487 5.260000e-166 595.0
10 TraesCS6B01G244800 chr6D 91.667 192 15 1 4180 4370 275161254 275161063 1.680000e-66 265.0
11 TraesCS6B01G244800 chr6A 92.840 1634 56 23 308 1904 394619009 394617400 0.000000e+00 2313.0
12 TraesCS6B01G244800 chr6A 90.141 1349 110 17 2453 3788 394616946 394615608 0.000000e+00 1733.0
13 TraesCS6B01G244800 chr6A 92.122 1117 45 14 5563 6639 394614258 394613145 0.000000e+00 1535.0
14 TraesCS6B01G244800 chr6A 88.907 622 37 16 4881 5479 394615363 394614751 0.000000e+00 737.0
15 TraesCS6B01G244800 chr6A 92.000 375 24 4 2428 2798 592504837 592504465 9.050000e-144 521.0
16 TraesCS6B01G244800 chr6A 94.099 322 7 5 1 310 394619604 394619283 5.520000e-131 479.0
17 TraesCS6B01G244800 chr6A 91.259 286 24 1 7310 7594 394612716 394612431 9.570000e-104 388.0
18 TraesCS6B01G244800 chr6A 95.023 221 10 1 6705 6924 394613007 394612787 5.840000e-91 346.0
19 TraesCS6B01G244800 chr6A 93.085 188 11 2 4180 4366 394615553 394615367 2.800000e-69 274.0
20 TraesCS6B01G244800 chr6A 90.854 164 15 0 7676 7839 394612404 394612241 3.700000e-53 220.0
21 TraesCS6B01G244800 chr6A 83.544 79 8 3 7637 7711 35595670 35595747 1.420000e-07 69.4
22 TraesCS6B01G244800 chr3B 93.067 375 20 4 2428 2798 101910473 101910845 1.930000e-150 544.0
23 TraesCS6B01G244800 chr3B 96.774 186 6 0 4386 4571 131528524 131528339 2.130000e-80 311.0
24 TraesCS6B01G244800 chr5D 91.755 376 24 5 2428 2798 503301613 503301240 4.210000e-142 516.0
25 TraesCS6B01G244800 chr5D 91.733 375 24 5 2428 2798 6167239 6167610 1.510000e-141 514.0
26 TraesCS6B01G244800 chr5D 91.029 379 24 6 2428 2798 6266268 6266644 3.280000e-138 503.0
27 TraesCS6B01G244800 chr5D 96.596 235 8 0 4611 4845 129481345 129481579 2.660000e-104 390.0
28 TraesCS6B01G244800 chr5D 94.024 251 15 0 4608 4858 55650855 55650605 1.600000e-101 381.0
29 TraesCS6B01G244800 chr3A 91.200 375 24 8 2428 2798 69384010 69384379 1.180000e-137 501.0
30 TraesCS6B01G244800 chr3A 95.868 242 8 2 4608 4847 734166203 734165962 2.660000e-104 390.0
31 TraesCS6B01G244800 chr1D 90.933 375 26 6 2428 2798 246422191 246421821 1.520000e-136 497.0
32 TraesCS6B01G244800 chr1D 95.851 241 9 1 4607 4846 309071960 309072200 9.570000e-104 388.0
33 TraesCS6B01G244800 chr1D 92.857 42 2 1 4573 4613 354565969 354566010 8.530000e-05 60.2
34 TraesCS6B01G244800 chr5A 96.624 237 8 0 4611 4847 626961523 626961759 2.060000e-105 394.0
35 TraesCS6B01G244800 chr5A 93.750 48 3 0 4835 4882 617242398 617242351 1.100000e-08 73.1
36 TraesCS6B01G244800 chr5A 88.679 53 5 1 7664 7716 260444617 260444668 6.590000e-06 63.9
37 TraesCS6B01G244800 chr7D 96.596 235 8 0 4611 4845 45145491 45145725 2.660000e-104 390.0
38 TraesCS6B01G244800 chr7D 95.102 245 11 1 4611 4855 140312766 140312523 1.240000e-102 385.0
39 TraesCS6B01G244800 chr7D 95.102 245 11 1 4611 4855 140313927 140313684 1.240000e-102 385.0
40 TraesCS6B01G244800 chr7D 94.737 38 1 1 4848 4885 612881002 612880966 3.070000e-04 58.4
41 TraesCS6B01G244800 chr7A 95.473 243 10 1 4604 4845 721097163 721097405 3.440000e-103 387.0
42 TraesCS6B01G244800 chr7A 88.889 45 2 3 4848 4890 9527380 9527337 1.400000e-02 52.8
43 TraesCS6B01G244800 chr7A 88.889 45 2 3 4848 4890 9573962 9573919 1.400000e-02 52.8
44 TraesCS6B01G244800 chr7B 97.312 186 5 0 4386 4571 129963634 129963819 4.580000e-82 316.0
45 TraesCS6B01G244800 chr7B 95.288 191 9 0 4386 4576 625698074 625697884 3.570000e-78 303.0
46 TraesCS6B01G244800 chr5B 97.283 184 5 0 4388 4571 584167043 584166860 5.930000e-81 313.0
47 TraesCS6B01G244800 chr5B 94.898 196 8 2 4388 4582 610350072 610350266 9.920000e-79 305.0
48 TraesCS6B01G244800 chr1B 95.431 197 8 1 4379 4575 17801738 17801543 5.930000e-81 313.0
49 TraesCS6B01G244800 chr4B 95.408 196 8 1 4380 4574 660752811 660752616 2.130000e-80 311.0
50 TraesCS6B01G244800 chr4B 95.312 192 9 0 4385 4576 612366340 612366531 9.920000e-79 305.0
51 TraesCS6B01G244800 chr4B 93.659 205 11 2 4368 4571 649609359 649609562 9.920000e-79 305.0
52 TraesCS6B01G244800 chr2B 97.619 42 1 0 4573 4614 227080763 227080804 1.100000e-08 73.1
53 TraesCS6B01G244800 chr2B 94.737 38 1 1 4848 4885 647452203 647452167 3.070000e-04 58.4
54 TraesCS6B01G244800 chr4A 90.566 53 4 1 7664 7716 287230492 287230543 1.420000e-07 69.4
55 TraesCS6B01G244800 chr1A 100.000 34 0 0 4843 4876 513434659 513434626 6.590000e-06 63.9
56 TraesCS6B01G244800 chr3D 97.143 35 0 1 4848 4882 503847441 503847474 3.070000e-04 58.4
57 TraesCS6B01G244800 chrUn 84.906 53 7 1 7664 7716 180007271 180007220 1.400000e-02 52.8
58 TraesCS6B01G244800 chrUn 92.105 38 2 1 4842 4879 350454276 350454312 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G244800 chr6B 437161910 437169776 7866 True 3125.750000 5083 100.000000 1 7867 4 chr6B.!!$R1 7866
1 TraesCS6B01G244800 chr6D 275158034 275164758 6724 True 1285.833333 2739 90.411333 1 7867 6 chr6D.!!$R1 7866
2 TraesCS6B01G244800 chr6A 394612241 394619604 7363 True 891.666667 2313 92.036667 1 7839 9 chr6A.!!$R2 7838
3 TraesCS6B01G244800 chr7D 140312523 140313927 1404 True 385.000000 385 95.102000 4611 4855 2 chr7D.!!$R2 244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 789 0.109319 CGGGTAAAGCGCTGCATTTT 60.109 50.0 12.58 2.98 0.00 1.82 F
704 1015 0.246912 GCGATGCGAGAGTTGAAACG 60.247 55.0 0.00 0.00 0.00 3.60 F
2299 2654 0.253160 AGGGTAATGACCTGAGGGCA 60.253 55.0 10.74 10.74 46.09 5.36 F
2708 3109 0.034059 CGCGAGCCCATATCCTTTCT 59.966 55.0 0.00 0.00 0.00 2.52 F
3801 4224 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.0 0.00 0.00 0.00 3.82 F
4462 4886 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.0 0.00 0.00 41.32 3.85 F
6294 7443 0.179134 GAAGCGACCGTGCTGATAGT 60.179 55.0 0.00 0.00 46.60 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2682 0.673333 CGTTGCCACTCCACAGCATA 60.673 55.000 0.0 0.0 36.20 3.14 R
2383 2748 1.464608 CGTCACCACAGCTAATGTTGG 59.535 52.381 0.0 0.0 41.41 3.77 R
3738 4161 0.321564 CTCAAACTCATCGTGGCCCA 60.322 55.000 0.0 0.0 0.00 5.36 R
4443 4867 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.0 0.0 36.12 3.27 R
5363 5817 0.668535 TCGATCCATCTACACGCCAG 59.331 55.000 0.0 0.0 0.00 4.85 R
6434 7590 0.321919 ACTGCCAGTGCGATCAACAT 60.322 50.000 0.0 0.0 41.78 2.71 R
7686 9508 0.396556 TGCTCACGGGCTCTATACCA 60.397 55.000 0.0 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.385898 ACGTTTGTTTTATATTCTTGAGACCA 57.614 30.769 0.00 0.00 0.00 4.02
457 760 0.840617 TTTACATATCCTGCCCGCCA 59.159 50.000 0.00 0.00 0.00 5.69
483 789 0.109319 CGGGTAAAGCGCTGCATTTT 60.109 50.000 12.58 2.98 0.00 1.82
484 790 1.668628 CGGGTAAAGCGCTGCATTTTT 60.669 47.619 12.58 2.08 0.00 1.94
485 791 1.726248 GGGTAAAGCGCTGCATTTTTG 59.274 47.619 12.58 0.00 0.00 2.44
486 792 1.726248 GGTAAAGCGCTGCATTTTTGG 59.274 47.619 12.58 0.00 0.00 3.28
507 813 4.337555 TGGACACGTATAGAAAGCTAGACC 59.662 45.833 0.00 0.00 35.84 3.85
515 821 6.072838 CGTATAGAAAGCTAGACCGGATAACA 60.073 42.308 9.46 0.00 35.84 2.41
531 837 6.231951 CGGATAACAGACTAGACTAGATCCA 58.768 44.000 16.55 0.00 31.64 3.41
571 877 5.186198 AGCGAAACCTTATTCTGTAGCATT 58.814 37.500 0.00 0.00 0.00 3.56
652 963 2.205911 GAATAAGAGGAAGCAGTCGGC 58.794 52.381 0.00 0.00 45.30 5.54
665 976 0.476771 AGTCGGCTTTCCCCTTTGAA 59.523 50.000 0.00 0.00 0.00 2.69
666 977 1.133606 AGTCGGCTTTCCCCTTTGAAA 60.134 47.619 0.00 0.00 33.42 2.69
704 1015 0.246912 GCGATGCGAGAGTTGAAACG 60.247 55.000 0.00 0.00 0.00 3.60
734 1065 5.179452 TCTTAATTTCCACTTGGAGAGGG 57.821 43.478 0.00 0.00 46.36 4.30
904 1235 2.177580 ACGCCAATATTCCACGCCG 61.178 57.895 2.17 0.00 0.00 6.46
1053 1386 3.104512 AGGGGGCTTATTTTTGCTAACC 58.895 45.455 0.00 0.00 0.00 2.85
1258 1600 0.266152 AGGGGGAGATGAAGGACGAT 59.734 55.000 0.00 0.00 0.00 3.73
1375 1718 0.331278 TGAATTCATCCCCGCCTGTT 59.669 50.000 3.38 0.00 0.00 3.16
1376 1719 1.272425 TGAATTCATCCCCGCCTGTTT 60.272 47.619 3.38 0.00 0.00 2.83
1377 1720 1.824852 GAATTCATCCCCGCCTGTTTT 59.175 47.619 0.00 0.00 0.00 2.43
1378 1721 2.818751 ATTCATCCCCGCCTGTTTTA 57.181 45.000 0.00 0.00 0.00 1.52
1379 1722 2.588464 TTCATCCCCGCCTGTTTTAA 57.412 45.000 0.00 0.00 0.00 1.52
1380 1723 2.588464 TCATCCCCGCCTGTTTTAAA 57.412 45.000 0.00 0.00 0.00 1.52
1433 1776 0.370958 GTTTAGCGCGCGTAATTCCA 59.629 50.000 32.35 10.32 0.00 3.53
1459 1802 5.758784 AGTTTTTGTACGAGGAAAGGAGAAG 59.241 40.000 0.00 0.00 0.00 2.85
1570 1913 0.525668 TCGCTTTCTTCCGATCGAGC 60.526 55.000 18.66 15.11 0.00 5.03
1674 2018 1.678269 GCGTGAAGTAGACTGCGCAG 61.678 60.000 34.89 34.89 39.96 5.18
1761 2115 7.744087 ATATACATGCCGCTTTTTAATCTGA 57.256 32.000 0.00 0.00 0.00 3.27
1803 2157 3.549299 ATGAATATAGCGCTGCAAAGC 57.451 42.857 22.90 5.60 0.00 3.51
1830 2184 2.749076 TGCATGATGCTGTTACAACTCC 59.251 45.455 19.19 0.00 45.31 3.85
1854 2209 7.394077 TCCTTTTATTTTTACGGAAACCCCTAG 59.606 37.037 0.00 0.00 0.00 3.02
1889 2244 6.038997 ACCAACAAGATACTCCTAAGTGAC 57.961 41.667 0.00 0.00 36.92 3.67
2292 2647 3.029570 GAGGACGTAAGGGTAATGACCT 58.970 50.000 0.00 0.00 46.09 3.85
2293 2648 2.764572 AGGACGTAAGGGTAATGACCTG 59.235 50.000 0.00 0.00 46.09 4.00
2294 2649 2.762327 GGACGTAAGGGTAATGACCTGA 59.238 50.000 0.00 0.00 46.09 3.86
2296 2651 2.764572 ACGTAAGGGTAATGACCTGAGG 59.235 50.000 0.00 0.00 46.09 3.86
2299 2654 0.253160 AGGGTAATGACCTGAGGGCA 60.253 55.000 10.74 10.74 46.09 5.36
2302 2657 1.679032 GGTAATGACCTGAGGGCACAC 60.679 57.143 10.47 11.16 43.16 3.82
2306 2661 0.471022 TGACCTGAGGGCACACTGTA 60.471 55.000 0.82 0.00 35.63 2.74
2314 2669 1.699634 AGGGCACACTGTAGATGTTGT 59.300 47.619 0.00 0.00 0.00 3.32
2319 2674 3.061295 GCACACTGTAGATGTTGTCGATG 59.939 47.826 0.00 0.00 0.00 3.84
2327 2682 2.303022 AGATGTTGTCGATGGGTTCACT 59.697 45.455 0.00 0.00 0.00 3.41
2331 2686 2.309528 TGTCGATGGGTTCACTATGC 57.690 50.000 0.00 0.00 0.00 3.14
2373 2738 4.776647 GCGCCGCAACATGGAACC 62.777 66.667 3.15 0.00 0.00 3.62
2377 2742 2.035626 CGCAACATGGAACCCCCT 59.964 61.111 0.00 0.00 35.38 4.79
2380 2745 1.000359 CAACATGGAACCCCCTCCC 60.000 63.158 0.00 0.00 34.22 4.30
2381 2746 2.246126 AACATGGAACCCCCTCCCC 61.246 63.158 0.00 0.00 34.22 4.81
2382 2747 3.429580 CATGGAACCCCCTCCCCC 61.430 72.222 0.00 0.00 34.22 5.40
2402 2799 1.812571 CCCAACATTAGCTGTGGTGAC 59.187 52.381 17.58 0.00 38.39 3.67
2454 2851 7.596494 TGCCAAATTCACATTTTTGTTGAAAA 58.404 26.923 0.00 0.00 41.20 2.29
2486 2885 7.766219 TTTGTAATTACTCGCATAAGGACTC 57.234 36.000 16.33 0.00 0.00 3.36
2505 2904 0.542702 CAAAATGCCAGGTCCCCACT 60.543 55.000 0.00 0.00 0.00 4.00
2585 2986 3.513912 TCTTCTCCTTAGCATCCGTGAAA 59.486 43.478 0.00 0.00 0.00 2.69
2606 3007 9.178758 GTGAAAGACAAGAAAATATCAGGGTAT 57.821 33.333 0.00 0.00 0.00 2.73
2608 3009 8.525290 AAAGACAAGAAAATATCAGGGTATGG 57.475 34.615 0.00 0.00 0.00 2.74
2655 3056 3.560902 TCGAACCGATAGCTGATGATC 57.439 47.619 0.00 0.00 0.00 2.92
2659 3060 4.489810 GAACCGATAGCTGATGATCGAAT 58.510 43.478 16.32 6.11 46.19 3.34
2703 3104 1.373497 CTCACGCGAGCCCATATCC 60.373 63.158 15.93 0.00 31.00 2.59
2707 3108 0.249911 ACGCGAGCCCATATCCTTTC 60.250 55.000 15.93 0.00 0.00 2.62
2708 3109 0.034059 CGCGAGCCCATATCCTTTCT 59.966 55.000 0.00 0.00 0.00 2.52
2738 3139 3.199946 TCAATTGCTAATTCCGGTCTCCT 59.800 43.478 0.00 0.00 0.00 3.69
2742 3143 1.763545 GCTAATTCCGGTCTCCTTCCT 59.236 52.381 0.00 0.00 0.00 3.36
2802 3203 4.217983 CCCTTACGATCTAATTCCGCTAGT 59.782 45.833 0.00 0.00 0.00 2.57
2812 3213 1.529152 TTCCGCTAGTGGCACTTCGA 61.529 55.000 30.33 17.82 41.91 3.71
2830 3231 3.159472 TCGACCTGGCTTGAAGTACTAA 58.841 45.455 0.00 0.00 0.00 2.24
2843 3244 3.572604 AGTACTAACTGGCGTGACTTC 57.427 47.619 0.00 0.00 33.57 3.01
2867 3268 4.673580 CGCAAGATCCTCCATCAAGTTTTG 60.674 45.833 0.00 0.00 43.02 2.44
2877 3278 4.952957 TCCATCAAGTTTTGGACTGAAACA 59.047 37.500 0.94 0.00 39.00 2.83
2879 3280 5.163519 CCATCAAGTTTTGGACTGAAACACT 60.164 40.000 3.01 0.00 39.00 3.55
2882 3283 3.356290 AGTTTTGGACTGAAACACTGCT 58.644 40.909 3.01 0.00 38.99 4.24
2903 3305 4.096984 GCTTCATATCCAGGGTGAAAACTG 59.903 45.833 4.93 0.00 32.08 3.16
2935 3338 2.738587 TTGTTGGTTGGGAAGTAGCA 57.261 45.000 0.00 0.00 0.00 3.49
3000 3405 2.429930 CCGCCCTTCAGTGGTTGA 59.570 61.111 0.00 0.00 32.47 3.18
3014 3419 0.462581 GGTTGATCTCGCCATGCAGA 60.463 55.000 0.00 0.00 0.00 4.26
3021 3426 2.161855 TCTCGCCATGCAGAACAAAAT 58.838 42.857 0.00 0.00 0.00 1.82
3042 3447 3.973206 TTCTCGTCTTGGCCATCTTTA 57.027 42.857 6.09 0.00 0.00 1.85
3106 3512 1.115326 GTGCTTCTTGCCTGGGGTTT 61.115 55.000 0.00 0.00 42.00 3.27
3111 3517 0.821711 TCTTGCCTGGGGTTTGAACG 60.822 55.000 0.00 0.00 0.00 3.95
3119 3525 2.128507 GGGTTTGAACGTTGGGGCA 61.129 57.895 5.00 0.00 0.00 5.36
3124 3531 2.983592 GAACGTTGGGGCAGTGGG 60.984 66.667 5.00 0.00 0.00 4.61
3134 3541 4.643387 GCAGTGGGCACGGAAGGT 62.643 66.667 0.00 0.00 43.97 3.50
3156 3564 0.603975 ACAAGCAAGGTTCTCTCGGC 60.604 55.000 0.00 0.00 0.00 5.54
3185 3593 2.952978 GTGATGGTGGTGTTGGTTGTTA 59.047 45.455 0.00 0.00 0.00 2.41
3194 3602 3.942748 GGTGTTGGTTGTTAGTCTTGACA 59.057 43.478 3.49 0.00 0.00 3.58
3217 3625 1.115930 AGGACAACGAGGTGAGCTGT 61.116 55.000 0.00 0.00 0.00 4.40
3292 3700 4.783621 TCTCGGCATGGTGGCTGC 62.784 66.667 0.00 0.00 41.25 5.25
3310 3718 3.366374 GCTGCAACCAAAGAACTATCACC 60.366 47.826 0.00 0.00 0.00 4.02
3345 3753 1.956477 ACACCGAGCAAAAGCTCAAAT 59.044 42.857 16.62 0.00 36.70 2.32
3357 3765 2.350522 AGCTCAAATCGATGTGTGTCC 58.649 47.619 15.20 1.88 0.00 4.02
3390 3798 2.046411 ACGCCAATGGATGTCGCA 60.046 55.556 2.05 0.00 0.00 5.10
3424 3836 3.365265 GCAAGGGGTTGTGGCGAG 61.365 66.667 0.00 0.00 0.00 5.03
3464 3876 0.181587 TCCTTGTGAAAACCCTCGCA 59.818 50.000 0.00 0.00 34.08 5.10
3479 3891 3.337358 CCTCGCATGGCATGACATATAA 58.663 45.455 30.69 1.05 0.00 0.98
3520 3933 1.497309 TTTCTCCTTGGGGGCATCGT 61.497 55.000 0.00 0.00 34.39 3.73
3523 3936 3.781307 CCTTGGGGGCATCGTCGA 61.781 66.667 0.00 0.00 0.00 4.20
3548 3961 1.300465 CTGGATCCTGTCGGCATCG 60.300 63.158 14.23 0.00 37.82 3.84
3602 4016 4.265073 GTCTTATTGCAGTGGTGGAGATT 58.735 43.478 0.00 0.00 0.00 2.40
3603 4017 4.095483 GTCTTATTGCAGTGGTGGAGATTG 59.905 45.833 0.00 0.00 0.00 2.67
3604 4018 2.592102 ATTGCAGTGGTGGAGATTGT 57.408 45.000 0.00 0.00 0.00 2.71
3605 4019 3.719268 ATTGCAGTGGTGGAGATTGTA 57.281 42.857 0.00 0.00 0.00 2.41
3617 4031 3.457749 TGGAGATTGTATGTATGGTGGCA 59.542 43.478 0.00 0.00 0.00 4.92
3622 4036 3.769739 TGTATGTATGGTGGCATCCTC 57.230 47.619 0.00 0.00 0.00 3.71
3668 4087 2.912956 GGTATGGGATCCATGGCTTAGA 59.087 50.000 15.23 0.00 44.84 2.10
3670 4089 4.721776 GGTATGGGATCCATGGCTTAGATA 59.278 45.833 15.23 0.00 44.84 1.98
3738 4161 1.203063 GCAAGAAAGGGAGGGGAAGTT 60.203 52.381 0.00 0.00 0.00 2.66
3743 4166 4.062032 GGGAGGGGAAGTTGGGCC 62.062 72.222 0.00 0.00 0.00 5.80
3769 4192 2.432874 TGAGTTTGAGTCGTTCCCAAGA 59.567 45.455 0.00 0.00 0.00 3.02
3770 4193 3.060602 GAGTTTGAGTCGTTCCCAAGAG 58.939 50.000 0.00 0.00 0.00 2.85
3780 4203 2.192263 GTTCCCAAGAGAGAGGGTGAT 58.808 52.381 0.00 0.00 45.64 3.06
3785 4208 0.534412 AAGAGAGAGGGTGATGCGTG 59.466 55.000 0.00 0.00 0.00 5.34
3788 4211 1.188219 AGAGAGGGTGATGCGTGTGT 61.188 55.000 0.00 0.00 0.00 3.72
3790 4213 1.301716 GAGGGTGATGCGTGTGTGT 60.302 57.895 0.00 0.00 0.00 3.72
3793 4216 1.279539 GGTGATGCGTGTGTGTGTG 59.720 57.895 0.00 0.00 0.00 3.82
3795 4218 0.316114 GTGATGCGTGTGTGTGTGTG 60.316 55.000 0.00 0.00 0.00 3.82
3797 4220 0.316114 GATGCGTGTGTGTGTGTGTG 60.316 55.000 0.00 0.00 0.00 3.82
3799 4222 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
3801 4224 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
3803 4226 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3805 4228 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3807 4230 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3809 4232 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3810 4233 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3811 4234 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3812 4235 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3813 4236 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3814 4237 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3815 4238 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3816 4239 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3817 4240 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3818 4241 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3819 4242 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3820 4243 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3822 4245 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3823 4246 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3824 4247 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4298 4722 7.064609 TCCTAGTTGCACTTGATTATTTCTTCG 59.935 37.037 0.00 0.00 0.00 3.79
4330 4754 3.782046 TGCTCTCTACTTAAATCGGTGC 58.218 45.455 0.00 0.00 0.00 5.01
4344 4768 1.867919 CGGTGCACCTTCTCGACTCT 61.868 60.000 32.28 0.00 0.00 3.24
4350 4774 2.545952 GCACCTTCTCGACTCTGTTTGA 60.546 50.000 0.00 0.00 0.00 2.69
4357 4781 3.070018 CTCGACTCTGTTTGATTGCCTT 58.930 45.455 0.00 0.00 0.00 4.35
4375 4799 9.967346 GATTGCCTTAATAATAAAACTCCTTCC 57.033 33.333 0.00 0.00 0.00 3.46
4376 4800 7.562454 TGCCTTAATAATAAAACTCCTTCCG 57.438 36.000 0.00 0.00 0.00 4.30
4377 4801 7.114095 TGCCTTAATAATAAAACTCCTTCCGT 58.886 34.615 0.00 0.00 0.00 4.69
4378 4802 7.281549 TGCCTTAATAATAAAACTCCTTCCGTC 59.718 37.037 0.00 0.00 0.00 4.79
4379 4803 7.498239 GCCTTAATAATAAAACTCCTTCCGTCT 59.502 37.037 0.00 0.00 0.00 4.18
4380 4804 9.043079 CCTTAATAATAAAACTCCTTCCGTCTC 57.957 37.037 0.00 0.00 0.00 3.36
4381 4805 9.595823 CTTAATAATAAAACTCCTTCCGTCTCA 57.404 33.333 0.00 0.00 0.00 3.27
4382 4806 9.947433 TTAATAATAAAACTCCTTCCGTCTCAA 57.053 29.630 0.00 0.00 0.00 3.02
4383 4807 8.857694 AATAATAAAACTCCTTCCGTCTCAAA 57.142 30.769 0.00 0.00 0.00 2.69
4384 4808 8.857694 ATAATAAAACTCCTTCCGTCTCAAAA 57.142 30.769 0.00 0.00 0.00 2.44
4385 4809 7.761038 AATAAAACTCCTTCCGTCTCAAAAT 57.239 32.000 0.00 0.00 0.00 1.82
4386 4810 8.857694 AATAAAACTCCTTCCGTCTCAAAATA 57.142 30.769 0.00 0.00 0.00 1.40
4387 4811 8.857694 ATAAAACTCCTTCCGTCTCAAAATAA 57.142 30.769 0.00 0.00 0.00 1.40
4388 4812 6.803154 AAACTCCTTCCGTCTCAAAATAAG 57.197 37.500 0.00 0.00 0.00 1.73
4389 4813 4.833390 ACTCCTTCCGTCTCAAAATAAGG 58.167 43.478 0.00 0.00 35.80 2.69
4390 4814 4.192317 CTCCTTCCGTCTCAAAATAAGGG 58.808 47.826 0.00 0.00 35.31 3.95
4391 4815 3.054655 TCCTTCCGTCTCAAAATAAGGGG 60.055 47.826 0.00 0.00 35.31 4.79
4392 4816 3.279434 CTTCCGTCTCAAAATAAGGGGG 58.721 50.000 0.00 0.00 0.00 5.40
4393 4817 2.271777 TCCGTCTCAAAATAAGGGGGT 58.728 47.619 0.00 0.00 0.00 4.95
4394 4818 2.026636 TCCGTCTCAAAATAAGGGGGTG 60.027 50.000 0.00 0.00 0.00 4.61
4395 4819 2.290705 CCGTCTCAAAATAAGGGGGTGT 60.291 50.000 0.00 0.00 0.00 4.16
4396 4820 3.418047 CGTCTCAAAATAAGGGGGTGTT 58.582 45.455 0.00 0.00 0.00 3.32
4397 4821 3.824443 CGTCTCAAAATAAGGGGGTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
4398 4822 4.082949 CGTCTCAAAATAAGGGGGTGTTTC 60.083 45.833 0.00 0.00 0.00 2.78
4399 4823 5.077564 GTCTCAAAATAAGGGGGTGTTTCT 58.922 41.667 0.00 0.00 0.00 2.52
4400 4824 5.538813 GTCTCAAAATAAGGGGGTGTTTCTT 59.461 40.000 0.00 0.00 0.00 2.52
4401 4825 6.041637 GTCTCAAAATAAGGGGGTGTTTCTTT 59.958 38.462 0.00 0.00 0.00 2.52
4402 4826 6.613679 TCTCAAAATAAGGGGGTGTTTCTTTT 59.386 34.615 0.00 0.00 0.00 2.27
4403 4827 6.822442 TCAAAATAAGGGGGTGTTTCTTTTC 58.178 36.000 0.00 0.00 0.00 2.29
4404 4828 6.384305 TCAAAATAAGGGGGTGTTTCTTTTCA 59.616 34.615 0.00 0.00 0.00 2.69
4405 4829 6.419484 AAATAAGGGGGTGTTTCTTTTCAG 57.581 37.500 0.00 0.00 0.00 3.02
4406 4830 2.381752 AGGGGGTGTTTCTTTTCAGG 57.618 50.000 0.00 0.00 0.00 3.86
4407 4831 1.133167 AGGGGGTGTTTCTTTTCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
4408 4832 1.133294 GGGGGTGTTTCTTTTCAGGGA 60.133 52.381 0.00 0.00 0.00 4.20
4409 4833 1.961394 GGGGTGTTTCTTTTCAGGGAC 59.039 52.381 0.00 0.00 0.00 4.46
4410 4834 2.424379 GGGGTGTTTCTTTTCAGGGACT 60.424 50.000 0.00 0.00 43.88 3.85
4411 4835 3.296854 GGGTGTTTCTTTTCAGGGACTT 58.703 45.455 0.00 0.00 34.60 3.01
4412 4836 3.704566 GGGTGTTTCTTTTCAGGGACTTT 59.295 43.478 0.00 0.00 34.60 2.66
4413 4837 4.161565 GGGTGTTTCTTTTCAGGGACTTTT 59.838 41.667 0.00 0.00 34.60 2.27
4414 4838 5.361571 GGGTGTTTCTTTTCAGGGACTTTTA 59.638 40.000 0.00 0.00 34.60 1.52
4415 4839 6.461092 GGGTGTTTCTTTTCAGGGACTTTTAG 60.461 42.308 0.00 0.00 34.60 1.85
4416 4840 6.461092 GGTGTTTCTTTTCAGGGACTTTTAGG 60.461 42.308 0.00 0.00 34.60 2.69
4417 4841 6.096423 GTGTTTCTTTTCAGGGACTTTTAGGT 59.904 38.462 0.00 0.00 34.60 3.08
4418 4842 6.096282 TGTTTCTTTTCAGGGACTTTTAGGTG 59.904 38.462 0.00 0.00 34.60 4.00
4419 4843 5.382664 TCTTTTCAGGGACTTTTAGGTGT 57.617 39.130 0.00 0.00 34.60 4.16
4420 4844 6.503560 TCTTTTCAGGGACTTTTAGGTGTA 57.496 37.500 0.00 0.00 34.60 2.90
4421 4845 6.531021 TCTTTTCAGGGACTTTTAGGTGTAG 58.469 40.000 0.00 0.00 34.60 2.74
4422 4846 4.903045 TTCAGGGACTTTTAGGTGTAGG 57.097 45.455 0.00 0.00 34.60 3.18
4423 4847 3.178865 TCAGGGACTTTTAGGTGTAGGG 58.821 50.000 0.00 0.00 34.60 3.53
4424 4848 3.178865 CAGGGACTTTTAGGTGTAGGGA 58.821 50.000 0.00 0.00 34.60 4.20
4425 4849 3.055312 CAGGGACTTTTAGGTGTAGGGAC 60.055 52.174 0.00 0.00 34.60 4.46
4426 4850 3.179685 GGGACTTTTAGGTGTAGGGACT 58.820 50.000 0.00 0.00 46.37 3.85
4427 4851 4.046360 AGGGACTTTTAGGTGTAGGGACTA 59.954 45.833 0.00 0.00 34.75 2.59
4428 4852 4.405036 GGGACTTTTAGGTGTAGGGACTAG 59.595 50.000 0.00 0.00 44.14 2.57
4429 4853 5.267587 GGACTTTTAGGTGTAGGGACTAGA 58.732 45.833 0.00 0.00 44.14 2.43
4430 4854 5.718607 GGACTTTTAGGTGTAGGGACTAGAA 59.281 44.000 0.00 0.00 44.14 2.10
4431 4855 6.212187 GGACTTTTAGGTGTAGGGACTAGAAA 59.788 42.308 0.00 0.00 44.14 2.52
4432 4856 7.256439 GGACTTTTAGGTGTAGGGACTAGAAAA 60.256 40.741 0.00 0.00 44.14 2.29
4433 4857 8.037723 ACTTTTAGGTGTAGGGACTAGAAAAA 57.962 34.615 0.00 0.00 44.14 1.94
4434 4858 8.155510 ACTTTTAGGTGTAGGGACTAGAAAAAG 58.844 37.037 0.00 0.00 44.14 2.27
4435 4859 7.622502 TTTAGGTGTAGGGACTAGAAAAAGT 57.377 36.000 0.00 0.00 44.14 2.66
4436 4860 5.741962 AGGTGTAGGGACTAGAAAAAGTC 57.258 43.478 0.00 0.00 44.14 3.01
4437 4861 5.404395 AGGTGTAGGGACTAGAAAAAGTCT 58.596 41.667 0.00 0.00 44.14 3.24
4438 4862 5.481122 AGGTGTAGGGACTAGAAAAAGTCTC 59.519 44.000 0.00 0.01 44.14 3.36
4443 4867 5.662674 GGGACTAGAAAAAGTCTCTAGCA 57.337 43.478 0.00 0.00 44.22 3.49
4444 4868 6.038997 GGGACTAGAAAAAGTCTCTAGCAA 57.961 41.667 0.00 0.00 44.22 3.91
4445 4869 6.465084 GGGACTAGAAAAAGTCTCTAGCAAA 58.535 40.000 0.00 0.00 44.22 3.68
4446 4870 6.369340 GGGACTAGAAAAAGTCTCTAGCAAAC 59.631 42.308 0.00 0.00 44.22 2.93
4447 4871 6.369340 GGACTAGAAAAAGTCTCTAGCAAACC 59.631 42.308 0.00 3.30 44.22 3.27
4448 4872 6.827727 ACTAGAAAAAGTCTCTAGCAAACCA 58.172 36.000 0.00 0.00 44.22 3.67
4449 4873 7.280356 ACTAGAAAAAGTCTCTAGCAAACCAA 58.720 34.615 0.00 0.00 44.22 3.67
4450 4874 7.773690 ACTAGAAAAAGTCTCTAGCAAACCAAA 59.226 33.333 0.00 0.00 44.22 3.28
4451 4875 6.796426 AGAAAAAGTCTCTAGCAAACCAAAC 58.204 36.000 0.00 0.00 0.00 2.93
4452 4876 6.377146 AGAAAAAGTCTCTAGCAAACCAAACA 59.623 34.615 0.00 0.00 0.00 2.83
4453 4877 5.757850 AAAGTCTCTAGCAAACCAAACAG 57.242 39.130 0.00 0.00 0.00 3.16
4454 4878 3.744660 AGTCTCTAGCAAACCAAACAGG 58.255 45.455 0.00 0.00 45.67 4.00
4455 4879 2.814336 GTCTCTAGCAAACCAAACAGGG 59.186 50.000 0.00 0.00 43.89 4.45
4456 4880 2.441750 TCTCTAGCAAACCAAACAGGGT 59.558 45.455 0.00 0.00 45.04 4.34
4457 4881 2.554032 CTCTAGCAAACCAAACAGGGTG 59.446 50.000 0.00 0.00 41.32 4.61
4458 4882 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
4459 4883 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
4460 4884 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
4461 4885 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
4462 4886 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
4463 4887 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
4464 4888 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
4465 4889 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
4466 4890 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
4496 4920 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
4497 4921 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
4498 4922 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
4499 4923 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
4500 4924 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
4501 4925 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
4502 4926 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
4503 4927 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
4504 4928 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
4505 4929 2.569404 AGTCCTTAGAAGCACCTCCTTG 59.431 50.000 0.00 0.00 0.00 3.61
4506 4930 2.567615 GTCCTTAGAAGCACCTCCTTGA 59.432 50.000 0.00 0.00 0.00 3.02
4507 4931 2.834549 TCCTTAGAAGCACCTCCTTGAG 59.165 50.000 0.00 0.00 0.00 3.02
4508 4932 2.834549 CCTTAGAAGCACCTCCTTGAGA 59.165 50.000 0.00 0.00 0.00 3.27
4509 4933 3.118811 CCTTAGAAGCACCTCCTTGAGAG 60.119 52.174 0.00 0.00 42.83 3.20
4510 4934 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
4511 4935 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
4512 4936 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
4513 4937 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
4514 4938 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
4515 4939 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
4516 4940 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
4517 4941 3.500299 GCACCTCCTTGAGAGTCTTTTTC 59.500 47.826 0.00 0.00 41.47 2.29
4518 4942 4.708177 CACCTCCTTGAGAGTCTTTTTCA 58.292 43.478 0.00 0.00 41.47 2.69
4519 4943 5.126067 CACCTCCTTGAGAGTCTTTTTCAA 58.874 41.667 0.00 0.00 41.47 2.69
4520 4944 5.590259 CACCTCCTTGAGAGTCTTTTTCAAA 59.410 40.000 0.00 0.00 41.47 2.69
4521 4945 6.095440 CACCTCCTTGAGAGTCTTTTTCAAAA 59.905 38.462 0.00 0.00 41.47 2.44
4522 4946 6.663523 ACCTCCTTGAGAGTCTTTTTCAAAAA 59.336 34.615 0.00 0.00 41.47 1.94
4523 4947 7.148000 ACCTCCTTGAGAGTCTTTTTCAAAAAG 60.148 37.037 15.46 15.46 41.47 2.27
4524 4948 7.148000 CCTCCTTGAGAGTCTTTTTCAAAAAGT 60.148 37.037 19.82 4.20 41.47 2.66
4525 4949 7.762382 TCCTTGAGAGTCTTTTTCAAAAAGTC 58.238 34.615 19.82 15.25 31.11 3.01
4526 4950 6.975197 CCTTGAGAGTCTTTTTCAAAAAGTCC 59.025 38.462 19.82 12.77 31.11 3.85
4527 4951 6.451064 TGAGAGTCTTTTTCAAAAAGTCCC 57.549 37.500 19.82 7.71 0.00 4.46
4528 4952 5.949354 TGAGAGTCTTTTTCAAAAAGTCCCA 59.051 36.000 19.82 7.68 0.00 4.37
4529 4953 6.095440 TGAGAGTCTTTTTCAAAAAGTCCCAG 59.905 38.462 19.82 0.00 0.00 4.45
4530 4954 5.360999 AGAGTCTTTTTCAAAAAGTCCCAGG 59.639 40.000 19.82 0.00 0.00 4.45
4531 4955 4.405680 AGTCTTTTTCAAAAAGTCCCAGGG 59.594 41.667 19.82 0.00 0.00 4.45
4532 4956 4.404394 GTCTTTTTCAAAAAGTCCCAGGGA 59.596 41.667 19.82 3.01 0.00 4.20
4564 4988 8.850007 AAAATCCTAGGACTAGAGAAACAAAC 57.150 34.615 15.42 0.00 35.21 2.93
4565 4989 7.554959 AATCCTAGGACTAGAGAAACAAACA 57.445 36.000 15.42 0.00 35.21 2.83
4566 4990 6.342338 TCCTAGGACTAGAGAAACAAACAC 57.658 41.667 7.62 0.00 35.21 3.32
4567 4991 5.245526 TCCTAGGACTAGAGAAACAAACACC 59.754 44.000 7.62 0.00 35.21 4.16
4568 4992 5.011738 CCTAGGACTAGAGAAACAAACACCA 59.988 44.000 1.05 0.00 35.21 4.17
4569 4993 4.704965 AGGACTAGAGAAACAAACACCAC 58.295 43.478 0.00 0.00 0.00 4.16
4570 4994 3.813724 GGACTAGAGAAACAAACACCACC 59.186 47.826 0.00 0.00 0.00 4.61
4571 4995 3.813724 GACTAGAGAAACAAACACCACCC 59.186 47.826 0.00 0.00 0.00 4.61
4572 4996 2.818751 AGAGAAACAAACACCACCCA 57.181 45.000 0.00 0.00 0.00 4.51
4573 4997 3.094484 AGAGAAACAAACACCACCCAA 57.906 42.857 0.00 0.00 0.00 4.12
4574 4998 3.023832 AGAGAAACAAACACCACCCAAG 58.976 45.455 0.00 0.00 0.00 3.61
4575 4999 2.758423 GAGAAACAAACACCACCCAAGT 59.242 45.455 0.00 0.00 0.00 3.16
4576 5000 2.495669 AGAAACAAACACCACCCAAGTG 59.504 45.455 0.00 0.00 44.12 3.16
4581 5005 2.615244 ACACCACCCAAGTGTCTCA 58.385 52.632 0.00 0.00 45.13 3.27
4582 5006 0.916086 ACACCACCCAAGTGTCTCAA 59.084 50.000 0.00 0.00 45.13 3.02
4583 5007 1.308998 CACCACCCAAGTGTCTCAAC 58.691 55.000 0.00 0.00 42.88 3.18
4584 5008 1.134098 CACCACCCAAGTGTCTCAACT 60.134 52.381 0.00 0.00 42.88 3.16
4585 5009 1.564348 ACCACCCAAGTGTCTCAACTT 59.436 47.619 0.00 0.00 42.88 2.66
4586 5010 2.025321 ACCACCCAAGTGTCTCAACTTT 60.025 45.455 0.00 0.00 42.88 2.66
4587 5011 2.358898 CCACCCAAGTGTCTCAACTTTG 59.641 50.000 0.00 0.00 42.88 2.77
4588 5012 3.016736 CACCCAAGTGTCTCAACTTTGT 58.983 45.455 0.00 0.00 38.34 2.83
4589 5013 4.196193 CACCCAAGTGTCTCAACTTTGTA 58.804 43.478 0.00 0.00 38.34 2.41
4590 5014 4.035208 CACCCAAGTGTCTCAACTTTGTAC 59.965 45.833 0.00 0.00 38.34 2.90
4591 5015 3.564225 CCCAAGTGTCTCAACTTTGTACC 59.436 47.826 0.00 0.00 38.34 3.34
4592 5016 4.196193 CCAAGTGTCTCAACTTTGTACCA 58.804 43.478 0.00 0.00 38.34 3.25
4593 5017 4.273480 CCAAGTGTCTCAACTTTGTACCAG 59.727 45.833 0.00 0.00 38.34 4.00
4594 5018 3.467803 AGTGTCTCAACTTTGTACCAGC 58.532 45.455 0.00 0.00 0.00 4.85
4595 5019 3.134804 AGTGTCTCAACTTTGTACCAGCT 59.865 43.478 0.00 0.00 0.00 4.24
4596 5020 3.877508 GTGTCTCAACTTTGTACCAGCTT 59.122 43.478 0.00 0.00 0.00 3.74
4597 5021 4.335594 GTGTCTCAACTTTGTACCAGCTTT 59.664 41.667 0.00 0.00 0.00 3.51
4598 5022 5.526111 GTGTCTCAACTTTGTACCAGCTTTA 59.474 40.000 0.00 0.00 0.00 1.85
4599 5023 5.758296 TGTCTCAACTTTGTACCAGCTTTAG 59.242 40.000 0.00 0.00 0.00 1.85
4600 5024 5.758784 GTCTCAACTTTGTACCAGCTTTAGT 59.241 40.000 0.00 0.00 0.00 2.24
4601 5025 6.927381 GTCTCAACTTTGTACCAGCTTTAGTA 59.073 38.462 0.00 0.00 0.00 1.82
4602 5026 7.603024 GTCTCAACTTTGTACCAGCTTTAGTAT 59.397 37.037 0.00 0.00 0.00 2.12
4603 5027 8.809066 TCTCAACTTTGTACCAGCTTTAGTATA 58.191 33.333 0.00 0.00 0.00 1.47
4604 5028 9.431887 CTCAACTTTGTACCAGCTTTAGTATAA 57.568 33.333 0.00 0.00 0.00 0.98
4605 5029 9.781633 TCAACTTTGTACCAGCTTTAGTATAAA 57.218 29.630 8.83 8.83 31.45 1.40
4639 5063 2.416547 CCATCACAGTTTAGAAGGCACG 59.583 50.000 0.00 0.00 0.00 5.34
4645 5069 4.273969 CACAGTTTAGAAGGCACGGTTAAA 59.726 41.667 0.00 0.00 0.00 1.52
4659 5083 2.216714 CGGTTAAATTTGCGTGCGTTTT 59.783 40.909 0.00 0.00 0.00 2.43
4662 5086 2.988807 AAATTTGCGTGCGTTTTCAC 57.011 40.000 0.00 0.00 0.00 3.18
4680 5104 7.041644 CGTTTTCACAATAGACAAGGTTTAGGA 60.042 37.037 0.00 0.00 0.00 2.94
4849 5273 3.351020 CGTGACGGAGGGAGTATTAAG 57.649 52.381 0.00 0.00 0.00 1.85
4852 5276 4.381292 CGTGACGGAGGGAGTATTAAGTTT 60.381 45.833 0.00 0.00 0.00 2.66
4853 5277 4.868734 GTGACGGAGGGAGTATTAAGTTTG 59.131 45.833 0.00 0.00 0.00 2.93
4854 5278 4.773674 TGACGGAGGGAGTATTAAGTTTGA 59.226 41.667 0.00 0.00 0.00 2.69
4855 5279 5.105473 TGACGGAGGGAGTATTAAGTTTGAG 60.105 44.000 0.00 0.00 0.00 3.02
4856 5280 5.021458 ACGGAGGGAGTATTAAGTTTGAGA 58.979 41.667 0.00 0.00 0.00 3.27
4857 5281 5.105432 ACGGAGGGAGTATTAAGTTTGAGAC 60.105 44.000 0.00 0.00 0.00 3.36
4859 5283 6.407074 CGGAGGGAGTATTAAGTTTGAGACAT 60.407 42.308 0.00 0.00 0.00 3.06
4860 5284 7.339482 GGAGGGAGTATTAAGTTTGAGACATT 58.661 38.462 0.00 0.00 0.00 2.71
4861 5285 7.829706 GGAGGGAGTATTAAGTTTGAGACATTT 59.170 37.037 0.00 0.00 0.00 2.32
4862 5286 9.886132 GAGGGAGTATTAAGTTTGAGACATTTA 57.114 33.333 0.00 0.00 0.00 1.40
4873 5297 8.574196 AGTTTGAGACATTTATTTTGAAACGG 57.426 30.769 0.00 0.00 0.00 4.44
4875 5299 8.690840 GTTTGAGACATTTATTTTGAAACGGAG 58.309 33.333 0.00 0.00 0.00 4.63
4876 5300 6.908825 TGAGACATTTATTTTGAAACGGAGG 58.091 36.000 0.00 0.00 0.00 4.30
4877 5301 6.072175 TGAGACATTTATTTTGAAACGGAGGG 60.072 38.462 0.00 0.00 0.00 4.30
4878 5302 6.007703 AGACATTTATTTTGAAACGGAGGGA 58.992 36.000 0.00 0.00 0.00 4.20
4879 5303 6.151144 AGACATTTATTTTGAAACGGAGGGAG 59.849 38.462 0.00 0.00 0.00 4.30
4880 5304 5.773176 ACATTTATTTTGAAACGGAGGGAGT 59.227 36.000 0.00 0.00 0.00 3.85
4881 5305 6.943718 ACATTTATTTTGAAACGGAGGGAGTA 59.056 34.615 0.00 0.00 0.00 2.59
4882 5306 6.806388 TTTATTTTGAAACGGAGGGAGTAC 57.194 37.500 0.00 0.00 0.00 2.73
4886 5310 6.855763 TTTTGAAACGGAGGGAGTACTATA 57.144 37.500 0.00 0.00 0.00 1.31
4890 5314 6.243900 TGAAACGGAGGGAGTACTATATAGG 58.756 44.000 14.25 0.00 0.00 2.57
4962 5386 1.893315 AGGGTCAATGCCTTAGCCTA 58.107 50.000 0.00 0.00 39.29 3.93
4993 5417 2.099098 GCCCCATTTGCACACACTATAC 59.901 50.000 0.00 0.00 0.00 1.47
4996 5422 5.129634 CCCCATTTGCACACACTATACATA 58.870 41.667 0.00 0.00 0.00 2.29
5007 5433 7.255242 GCACACACTATACATATTCAATGGCTT 60.255 37.037 0.00 0.00 0.00 4.35
5046 5472 5.107530 TGCACGTTAAGTAATGGTTCGTTAC 60.108 40.000 0.00 2.73 36.44 2.50
5077 5503 3.113043 ACCCTAGCCAAGGTTAGGTTAG 58.887 50.000 22.56 12.93 44.36 2.34
5079 5505 2.772515 CCTAGCCAAGGTTAGGTTAGCT 59.227 50.000 18.00 0.00 42.00 3.32
5311 5751 4.332543 GCCGATGACTTCATTAATCACACA 59.667 41.667 0.00 0.00 36.57 3.72
5315 5755 6.237942 CGATGACTTCATTAATCACACACTCC 60.238 42.308 0.00 0.00 36.57 3.85
5319 5759 7.119699 TGACTTCATTAATCACACACTCCATTC 59.880 37.037 0.00 0.00 0.00 2.67
5368 5822 1.382522 AAGCATAACATGTCCTGGCG 58.617 50.000 0.00 0.00 0.00 5.69
5375 5832 1.195115 ACATGTCCTGGCGTGTAGAT 58.805 50.000 12.32 0.00 36.89 1.98
5381 5838 0.319040 CCTGGCGTGTAGATGGATCG 60.319 60.000 0.00 0.00 0.00 3.69
5397 5854 3.069016 TGGATCGACGGTTGCATAACTAT 59.931 43.478 0.00 0.00 36.99 2.12
5437 5894 9.153721 CTTATCTGCAAATTAAATGCTTGGAAA 57.846 29.630 15.15 5.54 44.14 3.13
5458 6159 6.754675 GGAAATGACACCCGTTATTAATTTGG 59.245 38.462 0.00 0.00 31.53 3.28
5481 6182 6.532365 GGAATAATTCCTCGTCAAGATCAC 57.468 41.667 0.00 0.00 46.57 3.06
5482 6183 6.284459 GGAATAATTCCTCGTCAAGATCACT 58.716 40.000 0.00 0.00 46.57 3.41
5483 6184 6.422400 GGAATAATTCCTCGTCAAGATCACTC 59.578 42.308 0.00 0.00 46.57 3.51
5484 6185 4.808414 AATTCCTCGTCAAGATCACTCA 57.192 40.909 0.00 0.00 0.00 3.41
5486 6187 4.600692 TTCCTCGTCAAGATCACTCAAA 57.399 40.909 0.00 0.00 0.00 2.69
5487 6188 4.600692 TCCTCGTCAAGATCACTCAAAA 57.399 40.909 0.00 0.00 0.00 2.44
5489 6190 6.280855 TCCTCGTCAAGATCACTCAAAATA 57.719 37.500 0.00 0.00 0.00 1.40
5490 6191 6.100004 TCCTCGTCAAGATCACTCAAAATAC 58.900 40.000 0.00 0.00 0.00 1.89
5491 6192 6.071334 TCCTCGTCAAGATCACTCAAAATACT 60.071 38.462 0.00 0.00 0.00 2.12
5492 6193 6.254589 CCTCGTCAAGATCACTCAAAATACTC 59.745 42.308 0.00 0.00 0.00 2.59
5493 6194 5.800438 TCGTCAAGATCACTCAAAATACTCG 59.200 40.000 0.00 0.00 0.00 4.18
5494 6195 5.573282 CGTCAAGATCACTCAAAATACTCGT 59.427 40.000 0.00 0.00 0.00 4.18
5495 6196 6.089551 CGTCAAGATCACTCAAAATACTCGTT 59.910 38.462 0.00 0.00 0.00 3.85
5558 6282 6.320171 CCATGAAGAAGTTTAGCAATCACTG 58.680 40.000 0.00 0.00 0.00 3.66
5616 6731 5.775813 ATAAAGCAGGATATCATGGCTCT 57.224 39.130 18.34 5.00 0.00 4.09
5668 6792 4.382320 GCGAGGCCCACCGTAACA 62.382 66.667 0.00 0.00 42.76 2.41
5694 6818 1.001293 AGCAGCACGAAGATGAAGTCA 59.999 47.619 0.00 0.00 0.00 3.41
5700 6824 3.838120 CACGAAGATGAAGTCACAGCTA 58.162 45.455 0.00 0.00 35.41 3.32
5709 6833 2.464157 AGTCACAGCTAAGCTTCACC 57.536 50.000 0.00 0.00 36.40 4.02
5850 6989 2.060980 CAGTAGCGGGGGCTTCTCT 61.061 63.158 0.00 0.00 0.00 3.10
5994 7133 6.969366 TCACACTTAAACTTTGGATGTGATG 58.031 36.000 10.31 0.00 39.87 3.07
6294 7443 0.179134 GAAGCGACCGTGCTGATAGT 60.179 55.000 0.00 0.00 46.60 2.12
6303 7452 2.095263 CCGTGCTGATAGTTTTTGTGGG 60.095 50.000 0.00 0.00 0.00 4.61
6326 7475 1.166531 AACAGCAAACGAGCACCTCC 61.167 55.000 0.00 0.00 36.85 4.30
6387 7536 0.813210 GAGCCAGCTGCAGGTATGTC 60.813 60.000 19.71 11.12 44.83 3.06
6388 7537 1.078214 GCCAGCTGCAGGTATGTCA 60.078 57.895 19.71 0.00 40.77 3.58
6434 7590 5.801531 AGGCTACATCCGTCAATATGTTA 57.198 39.130 0.00 0.00 37.50 2.41
6439 7595 7.290842 GCTACATCCGTCAATATGTTATGTTG 58.709 38.462 0.00 0.00 37.50 3.33
6448 7604 6.847792 GTCAATATGTTATGTTGATCGCACTG 59.152 38.462 4.66 0.00 41.40 3.66
6449 7605 5.929697 ATATGTTATGTTGATCGCACTGG 57.070 39.130 0.00 0.00 0.00 4.00
6466 7622 0.612744 TGGCAGTGATCATGGAACGA 59.387 50.000 0.00 0.00 0.00 3.85
6487 7643 1.581954 ACGAGAGCTTGGTCGTCTG 59.418 57.895 12.42 0.00 46.17 3.51
6488 7644 1.153939 CGAGAGCTTGGTCGTCTGG 60.154 63.158 6.04 0.00 0.00 3.86
6489 7645 1.867919 CGAGAGCTTGGTCGTCTGGT 61.868 60.000 6.04 0.00 0.00 4.00
6492 7648 1.863662 GAGCTTGGTCGTCTGGTCGA 61.864 60.000 0.00 0.00 37.51 4.20
6507 7663 3.753434 CGACCGTCTCTGCAGGCT 61.753 66.667 15.13 0.00 0.00 4.58
6677 7889 6.147328 AGCTAAACGGTTCATACTTTCTCAAC 59.853 38.462 0.00 0.00 0.00 3.18
6744 7985 5.712152 CCAGTCTTTGGCCATAATTATCC 57.288 43.478 6.09 0.00 40.87 2.59
6746 7987 6.542821 CCAGTCTTTGGCCATAATTATCCTA 58.457 40.000 6.09 0.00 40.87 2.94
6814 8059 8.161699 AGAACGTGAATTTTGGTACTAATTGT 57.838 30.769 0.00 0.00 0.00 2.71
6819 8064 7.537306 CGTGAATTTTGGTACTAATTGTTGAGG 59.463 37.037 0.00 0.00 0.00 3.86
6870 8690 1.742761 ACCATTCAGTCATTGGCTCG 58.257 50.000 0.00 0.00 33.66 5.03
6927 8747 0.831711 AAAACCACCACATCCCTGGC 60.832 55.000 0.00 0.00 34.20 4.85
7348 9168 4.100035 TGATCCTATGCAACTCTACACAGG 59.900 45.833 0.00 0.00 0.00 4.00
7356 9176 3.057736 GCAACTCTACACAGGTTCTACGA 60.058 47.826 0.00 0.00 0.00 3.43
7366 9186 5.632347 ACACAGGTTCTACGAATAGAAAACG 59.368 40.000 0.00 0.00 46.64 3.60
7437 9257 6.824305 AAATGATTTCACAAGGAGAATCGT 57.176 33.333 0.00 0.00 34.37 3.73
7487 9307 1.673923 CCATCTTCGAGCAACTGAGCA 60.674 52.381 0.00 0.00 36.85 4.26
7498 9318 2.093553 GCAACTGAGCAGAGGAAGAGAT 60.094 50.000 4.21 0.00 0.00 2.75
7512 9332 0.324738 AGAGATCTCCAAGGCACGGA 60.325 55.000 19.30 0.00 0.00 4.69
7513 9333 0.179097 GAGATCTCCAAGGCACGGAC 60.179 60.000 12.00 0.00 0.00 4.79
7582 9403 1.423921 GGATGTGGGGGTAATAGGTGG 59.576 57.143 0.00 0.00 0.00 4.61
7590 9411 1.137697 GGTAATAGGTGGGAGTGGGG 58.862 60.000 0.00 0.00 0.00 4.96
7626 9447 1.971695 CCCCGTCTCAAAAGGCACC 60.972 63.158 0.00 0.00 0.00 5.01
7661 9483 0.607762 TGCGCATGGGCTAAAGTTCA 60.608 50.000 31.56 9.49 38.10 3.18
7662 9484 0.740737 GCGCATGGGCTAAAGTTCAT 59.259 50.000 26.07 0.00 38.10 2.57
7702 9524 0.679505 GCATGGTATAGAGCCCGTGA 59.320 55.000 2.17 0.00 39.64 4.35
7707 9529 0.032267 GTATAGAGCCCGTGAGCACC 59.968 60.000 0.00 0.00 34.23 5.01
7716 9538 3.626924 GTGAGCACCGGGTGTCCT 61.627 66.667 26.86 16.95 35.75 3.85
7719 9541 2.203728 AGCACCGGGTGTCCTGTA 60.204 61.111 26.86 0.00 35.75 2.74
7720 9542 1.823169 GAGCACCGGGTGTCCTGTAA 61.823 60.000 26.86 0.00 35.75 2.41
7732 9554 5.068591 GGGTGTCCTGTAAATTTTGACAACT 59.931 40.000 18.80 0.00 42.02 3.16
7808 9630 2.157738 GCTGCAAGGTCATCTCACTTT 58.842 47.619 0.00 0.00 0.00 2.66
7810 9632 3.753272 GCTGCAAGGTCATCTCACTTTTA 59.247 43.478 0.00 0.00 0.00 1.52
7813 9635 6.571150 GCTGCAAGGTCATCTCACTTTTAAAT 60.571 38.462 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.815734 CTCATGACGTACCCGAACCT 59.184 55.000 0.00 0.00 37.88 3.50
437 738 1.235724 GGCGGGCAGGATATGTAAAC 58.764 55.000 0.00 0.00 0.00 2.01
457 760 1.067212 CAGCGCTTTACCCGTCTATCT 59.933 52.381 7.50 0.00 0.00 1.98
483 789 5.163581 GGTCTAGCTTTCTATACGTGTCCAA 60.164 44.000 0.00 0.00 0.00 3.53
484 790 4.337555 GGTCTAGCTTTCTATACGTGTCCA 59.662 45.833 0.00 0.00 0.00 4.02
485 791 4.554330 CGGTCTAGCTTTCTATACGTGTCC 60.554 50.000 0.00 0.00 0.00 4.02
486 792 4.525686 CGGTCTAGCTTTCTATACGTGTC 58.474 47.826 0.00 0.00 0.00 3.67
507 813 6.148150 GTGGATCTAGTCTAGTCTGTTATCCG 59.852 46.154 14.07 0.00 34.41 4.18
515 821 4.642885 GTGCTTGTGGATCTAGTCTAGTCT 59.357 45.833 6.77 0.00 0.00 3.24
531 837 0.034616 GCTCCTCTGTCTGTGCTTGT 59.965 55.000 0.00 0.00 0.00 3.16
571 877 1.272092 CCTCTTGGCACTCCATTTGGA 60.272 52.381 0.00 0.00 43.05 3.53
652 963 3.305335 CGGTGATGTTTCAAAGGGGAAAG 60.305 47.826 0.00 0.00 37.44 2.62
665 976 2.045926 GAGCCAGGCGGTGATGTT 60.046 61.111 5.55 0.00 33.28 2.71
666 977 4.101448 GGAGCCAGGCGGTGATGT 62.101 66.667 5.55 0.00 33.28 3.06
704 1015 4.965119 AGTGGAAATTAAGATCGGTTGC 57.035 40.909 0.00 0.00 0.00 4.17
904 1235 2.248431 GGTCTGCGCGTGTGTTTC 59.752 61.111 8.43 0.00 0.00 2.78
929 1260 1.078848 GCCGGGGCTATCAGCTATG 60.079 63.158 2.18 0.00 41.99 2.23
1053 1386 1.078759 GAACCTCCTCATGTCGTGCG 61.079 60.000 0.00 0.00 0.00 5.34
1258 1600 4.783621 GCCAGCATGTCCGCTCCA 62.784 66.667 0.00 0.00 41.38 3.86
1376 1719 9.638239 CACTAGCAAGAAAGGCATTAAATTTAA 57.362 29.630 12.85 12.85 0.00 1.52
1377 1720 8.250332 CCACTAGCAAGAAAGGCATTAAATTTA 58.750 33.333 0.00 0.00 0.00 1.40
1378 1721 7.099120 CCACTAGCAAGAAAGGCATTAAATTT 58.901 34.615 0.00 0.00 0.00 1.82
1379 1722 6.211384 ACCACTAGCAAGAAAGGCATTAAATT 59.789 34.615 0.00 0.00 0.00 1.82
1380 1723 5.716703 ACCACTAGCAAGAAAGGCATTAAAT 59.283 36.000 0.00 0.00 0.00 1.40
1433 1776 7.001099 TCTCCTTTCCTCGTACAAAAACTAT 57.999 36.000 0.00 0.00 0.00 2.12
1459 1802 4.439305 TGTTGCCATTAGACATTTCAGC 57.561 40.909 0.00 0.00 0.00 4.26
1489 1832 2.224185 GGTGGGAACAAAAACATGGACC 60.224 50.000 0.00 0.00 46.06 4.46
1570 1913 1.466167 ACAGCGCTGCTTTATTCTGTG 59.534 47.619 36.28 10.19 36.40 3.66
1674 2018 2.436115 AGGAAGCGCCGGTAAAGC 60.436 61.111 2.29 4.12 43.43 3.51
1687 2031 4.394439 GTTTAACCAAAACAGGCAGGAA 57.606 40.909 0.00 0.00 45.72 3.36
1780 2134 6.349973 GCTTTGCAGCGCTATATTCATATA 57.650 37.500 10.99 0.00 35.91 0.86
1781 2135 5.227238 GCTTTGCAGCGCTATATTCATAT 57.773 39.130 10.99 0.00 35.91 1.78
1782 2136 4.668576 GCTTTGCAGCGCTATATTCATA 57.331 40.909 10.99 0.00 35.91 2.15
1783 2137 3.549299 GCTTTGCAGCGCTATATTCAT 57.451 42.857 10.99 0.00 35.91 2.57
1830 2184 8.239314 GTCTAGGGGTTTCCGTAAAAATAAAAG 58.761 37.037 0.00 0.00 41.52 2.27
1854 2209 4.370364 TCTTGTTGGTTCAAAGCAAGTC 57.630 40.909 7.56 0.00 45.80 3.01
2292 2647 1.644509 ACATCTACAGTGTGCCCTCA 58.355 50.000 5.88 0.00 0.00 3.86
2293 2648 2.289694 ACAACATCTACAGTGTGCCCTC 60.290 50.000 5.88 0.00 0.00 4.30
2294 2649 1.699634 ACAACATCTACAGTGTGCCCT 59.300 47.619 5.88 0.00 0.00 5.19
2296 2651 1.726791 CGACAACATCTACAGTGTGCC 59.273 52.381 5.88 0.00 0.00 5.01
2299 2654 3.368427 CCCATCGACAACATCTACAGTGT 60.368 47.826 0.00 0.00 0.00 3.55
2302 2657 3.526931 ACCCATCGACAACATCTACAG 57.473 47.619 0.00 0.00 0.00 2.74
2306 2661 2.303022 AGTGAACCCATCGACAACATCT 59.697 45.455 0.00 0.00 0.00 2.90
2314 2669 1.831106 ACAGCATAGTGAACCCATCGA 59.169 47.619 0.00 0.00 0.00 3.59
2319 2674 1.279271 ACTCCACAGCATAGTGAACCC 59.721 52.381 5.65 0.00 42.05 4.11
2327 2682 0.673333 CGTTGCCACTCCACAGCATA 60.673 55.000 0.00 0.00 36.20 3.14
2331 2686 3.357079 GCCGTTGCCACTCCACAG 61.357 66.667 0.00 0.00 0.00 3.66
2360 2725 2.035626 AGGGGGTTCCATGTTGCG 59.964 61.111 0.00 0.00 38.24 4.85
2380 2745 2.886382 CCACAGCTAATGTTGGGGG 58.114 57.895 0.00 0.00 43.22 5.40
2382 2747 1.812571 GTCACCACAGCTAATGTTGGG 59.187 52.381 0.00 0.00 41.41 4.12
2383 2748 1.464608 CGTCACCACAGCTAATGTTGG 59.535 52.381 0.00 0.00 41.41 3.77
2384 2749 2.412870 TCGTCACCACAGCTAATGTTG 58.587 47.619 0.00 0.00 41.41 3.33
2385 2750 2.831685 TCGTCACCACAGCTAATGTT 57.168 45.000 0.00 0.00 41.41 2.71
2386 2751 2.497675 AGATCGTCACCACAGCTAATGT 59.502 45.455 0.00 0.00 45.43 2.71
2402 2799 3.576118 AGATGTGATCCCACCTAAGATCG 59.424 47.826 0.00 0.00 41.52 3.69
2585 2986 7.451731 TCCATACCCTGATATTTTCTTGTCT 57.548 36.000 0.00 0.00 0.00 3.41
2606 3007 9.618890 CTAAGAGAAATTCTGGATAATGTTCCA 57.381 33.333 0.00 0.00 43.56 3.53
2802 3203 2.818169 AAGCCAGGTCGAAGTGCCA 61.818 57.895 0.00 0.00 0.00 4.92
2812 3213 3.008049 CCAGTTAGTACTTCAAGCCAGGT 59.992 47.826 0.00 0.00 30.26 4.00
2843 3244 1.134280 ACTTGATGGAGGATCTTGCGG 60.134 52.381 0.00 0.00 33.73 5.69
2867 3268 4.333926 GGATATGAAGCAGTGTTTCAGTCC 59.666 45.833 26.41 26.41 37.91 3.85
2877 3278 2.481441 TCACCCTGGATATGAAGCAGT 58.519 47.619 0.00 0.00 0.00 4.40
2879 3280 4.016444 GTTTTCACCCTGGATATGAAGCA 58.984 43.478 0.00 0.00 34.04 3.91
2882 3283 5.512942 TCAGTTTTCACCCTGGATATGAA 57.487 39.130 0.00 0.00 0.00 2.57
2903 3305 5.048713 CCCAACCAACAAAGACTAGAACATC 60.049 44.000 0.00 0.00 0.00 3.06
2935 3338 6.622549 TCAACAAGGTAACAACAATTTCGTT 58.377 32.000 0.00 0.00 41.41 3.85
2963 3368 2.420547 GGCACTCAATCACTAGGCATCA 60.421 50.000 0.00 0.00 0.00 3.07
2968 3373 0.811616 GGCGGCACTCAATCACTAGG 60.812 60.000 3.07 0.00 0.00 3.02
2975 3380 1.377725 CTGAAGGGCGGCACTCAAT 60.378 57.895 4.62 0.00 0.00 2.57
3000 3405 1.825090 TTTGTTCTGCATGGCGAGAT 58.175 45.000 0.00 0.00 0.00 2.75
3014 3419 3.383185 TGGCCAAGACGAGAAATTTTGTT 59.617 39.130 0.61 0.00 0.00 2.83
3021 3426 2.859165 AAGATGGCCAAGACGAGAAA 57.141 45.000 10.96 0.00 0.00 2.52
3106 3512 2.203280 CCACTGCCCCAACGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
3119 3525 3.953775 CCACCTTCCGTGCCCACT 61.954 66.667 0.00 0.00 41.53 4.00
3124 3531 2.617274 GCTTGTCCACCTTCCGTGC 61.617 63.158 0.00 0.00 41.53 5.34
3127 3534 1.237285 CCTTGCTTGTCCACCTTCCG 61.237 60.000 0.00 0.00 0.00 4.30
3134 3541 1.270305 CGAGAGAACCTTGCTTGTCCA 60.270 52.381 0.00 0.00 0.00 4.02
3135 3542 1.433534 CGAGAGAACCTTGCTTGTCC 58.566 55.000 0.00 0.00 0.00 4.02
3156 3564 2.202878 CCACCATCACGTAGCCCG 60.203 66.667 0.00 0.00 44.03 6.13
3185 3593 2.223829 CGTTGTCCTCACTGTCAAGACT 60.224 50.000 1.53 0.00 0.00 3.24
3194 3602 0.962489 CTCACCTCGTTGTCCTCACT 59.038 55.000 0.00 0.00 0.00 3.41
3217 3625 1.431633 TCACACTAAGACCCTCCTCCA 59.568 52.381 0.00 0.00 0.00 3.86
3292 3700 2.159707 CGCGGTGATAGTTCTTTGGTTG 60.160 50.000 0.00 0.00 0.00 3.77
3310 3718 3.733960 TGTCACCTCCGTCTCGCG 61.734 66.667 0.00 0.00 40.95 5.87
3345 3753 1.739466 GTAGGTACGGACACACATCGA 59.261 52.381 0.00 0.00 0.00 3.59
3357 3765 0.652751 GCGTCATCGTCGTAGGTACG 60.653 60.000 3.05 3.05 42.95 3.67
3424 3836 1.487142 GCCTTAAGAGGGGAGAAGACC 59.513 57.143 3.36 0.00 43.75 3.85
3464 3876 4.352001 ACCACTCCTTATATGTCATGCCAT 59.648 41.667 0.00 0.00 0.00 4.40
3520 3933 0.467106 CAGGATCCAGAGCTCCTCGA 60.467 60.000 15.82 3.61 39.95 4.04
3523 3936 0.754957 CGACAGGATCCAGAGCTCCT 60.755 60.000 15.82 0.00 42.75 3.69
3572 3986 4.079212 ACCACTGCAATAAGACCCCATATT 60.079 41.667 0.00 0.00 0.00 1.28
3574 3988 2.849943 ACCACTGCAATAAGACCCCATA 59.150 45.455 0.00 0.00 0.00 2.74
3602 4016 2.037121 CGAGGATGCCACCATACATACA 59.963 50.000 0.00 0.00 34.53 2.29
3603 4017 2.037251 ACGAGGATGCCACCATACATAC 59.963 50.000 0.00 0.00 34.53 2.39
3604 4018 2.325484 ACGAGGATGCCACCATACATA 58.675 47.619 0.00 0.00 34.53 2.29
3605 4019 1.131638 ACGAGGATGCCACCATACAT 58.868 50.000 0.00 0.00 34.53 2.29
3617 4031 8.204160 TGATAATTACATCAACAGAACGAGGAT 58.796 33.333 0.00 0.00 32.01 3.24
3622 4036 8.278408 CCATCTGATAATTACATCAACAGAACG 58.722 37.037 0.00 0.00 36.69 3.95
3738 4161 0.321564 CTCAAACTCATCGTGGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
3743 4166 2.408704 GGAACGACTCAAACTCATCGTG 59.591 50.000 0.00 0.00 46.46 4.35
3769 4192 1.188219 ACACACGCATCACCCTCTCT 61.188 55.000 0.00 0.00 0.00 3.10
3770 4193 1.016130 CACACACGCATCACCCTCTC 61.016 60.000 0.00 0.00 0.00 3.20
3780 4203 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
3785 4208 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3788 4211 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3790 4213 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3793 4216 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3795 4218 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3797 4220 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3799 4222 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3801 4224 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3803 4226 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3805 4228 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4243 4667 4.640789 ATCCGTACAAGCTAGAGACAAG 57.359 45.455 0.00 0.00 0.00 3.16
4244 4668 4.705507 AGAATCCGTACAAGCTAGAGACAA 59.294 41.667 0.00 0.00 0.00 3.18
4298 4722 1.807142 GTAGAGAGCAAGTGGCCAAAC 59.193 52.381 7.24 0.00 46.50 2.93
4330 4754 3.371102 TCAAACAGAGTCGAGAAGGTG 57.629 47.619 0.00 0.00 0.00 4.00
4350 4774 8.630037 CGGAAGGAGTTTTATTATTAAGGCAAT 58.370 33.333 0.00 0.00 0.00 3.56
4357 4781 9.947433 TTTGAGACGGAAGGAGTTTTATTATTA 57.053 29.630 0.00 0.00 0.00 0.98
4366 4790 5.246307 CCTTATTTTGAGACGGAAGGAGTT 58.754 41.667 0.00 0.00 36.37 3.01
4370 4794 3.279434 CCCCTTATTTTGAGACGGAAGG 58.721 50.000 0.00 0.00 34.46 3.46
4373 4797 2.026636 CACCCCCTTATTTTGAGACGGA 60.027 50.000 0.00 0.00 0.00 4.69
4374 4798 2.290705 ACACCCCCTTATTTTGAGACGG 60.291 50.000 0.00 0.00 0.00 4.79
4375 4799 3.067684 ACACCCCCTTATTTTGAGACG 57.932 47.619 0.00 0.00 0.00 4.18
4376 4800 5.077564 AGAAACACCCCCTTATTTTGAGAC 58.922 41.667 0.00 0.00 0.00 3.36
4377 4801 5.333566 AGAAACACCCCCTTATTTTGAGA 57.666 39.130 0.00 0.00 0.00 3.27
4378 4802 6.419484 AAAGAAACACCCCCTTATTTTGAG 57.581 37.500 0.00 0.00 0.00 3.02
4379 4803 6.384305 TGAAAAGAAACACCCCCTTATTTTGA 59.616 34.615 0.00 0.00 28.86 2.69
4380 4804 6.587273 TGAAAAGAAACACCCCCTTATTTTG 58.413 36.000 0.00 0.00 28.86 2.44
4381 4805 6.183361 CCTGAAAAGAAACACCCCCTTATTTT 60.183 38.462 0.00 0.00 30.76 1.82
4382 4806 5.306937 CCTGAAAAGAAACACCCCCTTATTT 59.693 40.000 0.00 0.00 0.00 1.40
4383 4807 4.838423 CCTGAAAAGAAACACCCCCTTATT 59.162 41.667 0.00 0.00 0.00 1.40
4384 4808 4.416516 CCTGAAAAGAAACACCCCCTTAT 58.583 43.478 0.00 0.00 0.00 1.73
4385 4809 3.437344 CCCTGAAAAGAAACACCCCCTTA 60.437 47.826 0.00 0.00 0.00 2.69
4386 4810 2.677914 CCTGAAAAGAAACACCCCCTT 58.322 47.619 0.00 0.00 0.00 3.95
4387 4811 1.133167 CCCTGAAAAGAAACACCCCCT 60.133 52.381 0.00 0.00 0.00 4.79
4388 4812 1.133294 TCCCTGAAAAGAAACACCCCC 60.133 52.381 0.00 0.00 0.00 5.40
4389 4813 1.961394 GTCCCTGAAAAGAAACACCCC 59.039 52.381 0.00 0.00 0.00 4.95
4390 4814 2.945456 AGTCCCTGAAAAGAAACACCC 58.055 47.619 0.00 0.00 0.00 4.61
4391 4815 5.339008 AAAAGTCCCTGAAAAGAAACACC 57.661 39.130 0.00 0.00 0.00 4.16
4392 4816 6.096423 ACCTAAAAGTCCCTGAAAAGAAACAC 59.904 38.462 0.00 0.00 0.00 3.32
4393 4817 6.096282 CACCTAAAAGTCCCTGAAAAGAAACA 59.904 38.462 0.00 0.00 0.00 2.83
4394 4818 6.096423 ACACCTAAAAGTCCCTGAAAAGAAAC 59.904 38.462 0.00 0.00 0.00 2.78
4395 4819 6.192044 ACACCTAAAAGTCCCTGAAAAGAAA 58.808 36.000 0.00 0.00 0.00 2.52
4396 4820 5.762279 ACACCTAAAAGTCCCTGAAAAGAA 58.238 37.500 0.00 0.00 0.00 2.52
4397 4821 5.382664 ACACCTAAAAGTCCCTGAAAAGA 57.617 39.130 0.00 0.00 0.00 2.52
4398 4822 5.705905 CCTACACCTAAAAGTCCCTGAAAAG 59.294 44.000 0.00 0.00 0.00 2.27
4399 4823 5.457052 CCCTACACCTAAAAGTCCCTGAAAA 60.457 44.000 0.00 0.00 0.00 2.29
4400 4824 4.042435 CCCTACACCTAAAAGTCCCTGAAA 59.958 45.833 0.00 0.00 0.00 2.69
4401 4825 3.585732 CCCTACACCTAAAAGTCCCTGAA 59.414 47.826 0.00 0.00 0.00 3.02
4402 4826 3.178865 CCCTACACCTAAAAGTCCCTGA 58.821 50.000 0.00 0.00 0.00 3.86
4403 4827 3.055312 GTCCCTACACCTAAAAGTCCCTG 60.055 52.174 0.00 0.00 0.00 4.45
4404 4828 3.179685 GTCCCTACACCTAAAAGTCCCT 58.820 50.000 0.00 0.00 0.00 4.20
4405 4829 3.179685 AGTCCCTACACCTAAAAGTCCC 58.820 50.000 0.00 0.00 0.00 4.46
4406 4830 5.267587 TCTAGTCCCTACACCTAAAAGTCC 58.732 45.833 0.00 0.00 0.00 3.85
4407 4831 6.847421 TTCTAGTCCCTACACCTAAAAGTC 57.153 41.667 0.00 0.00 0.00 3.01
4408 4832 7.622502 TTTTCTAGTCCCTACACCTAAAAGT 57.377 36.000 0.00 0.00 0.00 2.66
4409 4833 8.155510 ACTTTTTCTAGTCCCTACACCTAAAAG 58.844 37.037 0.00 0.00 35.87 2.27
4410 4834 8.037723 ACTTTTTCTAGTCCCTACACCTAAAA 57.962 34.615 0.00 0.00 0.00 1.52
4411 4835 7.511714 AGACTTTTTCTAGTCCCTACACCTAAA 59.488 37.037 0.00 0.00 44.50 1.85
4412 4836 7.015064 AGACTTTTTCTAGTCCCTACACCTAA 58.985 38.462 0.00 0.00 44.50 2.69
4413 4837 6.559429 AGACTTTTTCTAGTCCCTACACCTA 58.441 40.000 0.00 0.00 44.50 3.08
4414 4838 5.404395 AGACTTTTTCTAGTCCCTACACCT 58.596 41.667 0.00 0.00 44.50 4.00
4415 4839 5.481122 AGAGACTTTTTCTAGTCCCTACACC 59.519 44.000 0.00 0.00 44.50 4.16
4416 4840 6.593268 AGAGACTTTTTCTAGTCCCTACAC 57.407 41.667 0.00 0.00 44.50 2.90
4417 4841 6.377712 GCTAGAGACTTTTTCTAGTCCCTACA 59.622 42.308 10.09 0.00 44.50 2.74
4418 4842 6.377712 TGCTAGAGACTTTTTCTAGTCCCTAC 59.622 42.308 10.09 0.00 44.50 3.18
4419 4843 6.491383 TGCTAGAGACTTTTTCTAGTCCCTA 58.509 40.000 10.09 0.00 44.50 3.53
4420 4844 5.334421 TGCTAGAGACTTTTTCTAGTCCCT 58.666 41.667 10.09 0.00 44.50 4.20
4421 4845 5.662674 TGCTAGAGACTTTTTCTAGTCCC 57.337 43.478 10.09 0.00 44.50 4.46
4422 4846 6.369340 GGTTTGCTAGAGACTTTTTCTAGTCC 59.631 42.308 10.09 5.66 44.50 3.85
4423 4847 6.929606 TGGTTTGCTAGAGACTTTTTCTAGTC 59.070 38.462 10.09 0.00 43.84 2.59
4424 4848 6.827727 TGGTTTGCTAGAGACTTTTTCTAGT 58.172 36.000 10.09 0.00 43.84 2.57
4425 4849 7.730364 TTGGTTTGCTAGAGACTTTTTCTAG 57.270 36.000 0.00 5.20 44.46 2.43
4426 4850 7.554835 TGTTTGGTTTGCTAGAGACTTTTTCTA 59.445 33.333 0.00 0.00 33.22 2.10
4427 4851 6.377146 TGTTTGGTTTGCTAGAGACTTTTTCT 59.623 34.615 0.00 0.00 37.23 2.52
4428 4852 6.560711 TGTTTGGTTTGCTAGAGACTTTTTC 58.439 36.000 0.00 0.00 0.00 2.29
4429 4853 6.405842 CCTGTTTGGTTTGCTAGAGACTTTTT 60.406 38.462 0.00 0.00 0.00 1.94
4430 4854 5.067805 CCTGTTTGGTTTGCTAGAGACTTTT 59.932 40.000 0.00 0.00 0.00 2.27
4431 4855 4.580580 CCTGTTTGGTTTGCTAGAGACTTT 59.419 41.667 0.00 0.00 0.00 2.66
4432 4856 4.137543 CCTGTTTGGTTTGCTAGAGACTT 58.862 43.478 0.00 0.00 0.00 3.01
4433 4857 3.496870 CCCTGTTTGGTTTGCTAGAGACT 60.497 47.826 0.00 0.00 0.00 3.24
4434 4858 2.814336 CCCTGTTTGGTTTGCTAGAGAC 59.186 50.000 0.00 0.00 0.00 3.36
4435 4859 2.441750 ACCCTGTTTGGTTTGCTAGAGA 59.558 45.455 0.00 0.00 33.91 3.10
4436 4860 2.554032 CACCCTGTTTGGTTTGCTAGAG 59.446 50.000 0.00 0.00 36.12 2.43
4437 4861 2.582052 CACCCTGTTTGGTTTGCTAGA 58.418 47.619 0.00 0.00 36.12 2.43
4438 4862 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
4439 4863 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
4440 4864 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
4441 4865 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
4442 4866 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
4443 4867 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
4444 4868 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
4445 4869 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
4446 4870 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
4473 4897 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
4474 4898 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
4475 4899 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
4476 4900 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
4477 4901 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
4478 4902 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
4479 4903 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
4480 4904 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
4481 4905 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
4482 4906 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
4483 4907 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
4484 4908 2.569404 CAAGGAGGTGCTTCTAAGGACT 59.431 50.000 13.12 1.24 45.42 3.85
4485 4909 2.567615 TCAAGGAGGTGCTTCTAAGGAC 59.432 50.000 5.86 5.86 45.39 3.85
4486 4910 2.834549 CTCAAGGAGGTGCTTCTAAGGA 59.165 50.000 0.00 0.00 0.00 3.36
4487 4911 2.834549 TCTCAAGGAGGTGCTTCTAAGG 59.165 50.000 0.00 0.00 0.00 2.69
4488 4912 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
4489 4913 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
4490 4914 3.093057 GACTCTCAAGGAGGTGCTTCTA 58.907 50.000 0.00 0.00 45.83 2.10
4491 4915 1.899142 GACTCTCAAGGAGGTGCTTCT 59.101 52.381 0.00 0.00 45.83 2.85
4492 4916 1.899142 AGACTCTCAAGGAGGTGCTTC 59.101 52.381 0.00 0.00 45.83 3.86
4493 4917 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
4494 4918 2.022718 AAGACTCTCAAGGAGGTGCT 57.977 50.000 0.00 0.00 45.83 4.40
4495 4919 2.849294 AAAGACTCTCAAGGAGGTGC 57.151 50.000 0.00 0.00 45.83 5.01
4496 4920 4.708177 TGAAAAAGACTCTCAAGGAGGTG 58.292 43.478 0.00 0.00 45.83 4.00
4497 4921 5.373812 TTGAAAAAGACTCTCAAGGAGGT 57.626 39.130 0.00 0.00 45.83 3.85
4498 4922 6.699575 TTTTGAAAAAGACTCTCAAGGAGG 57.300 37.500 0.00 0.00 45.83 4.30
4499 4923 7.766283 ACTTTTTGAAAAAGACTCTCAAGGAG 58.234 34.615 30.55 6.52 46.87 3.69
4500 4924 7.148069 GGACTTTTTGAAAAAGACTCTCAAGGA 60.148 37.037 30.55 0.00 31.11 3.36
4501 4925 6.975197 GGACTTTTTGAAAAAGACTCTCAAGG 59.025 38.462 30.55 7.27 31.11 3.61
4502 4926 6.975197 GGGACTTTTTGAAAAAGACTCTCAAG 59.025 38.462 30.55 7.82 31.11 3.02
4503 4927 6.435904 TGGGACTTTTTGAAAAAGACTCTCAA 59.564 34.615 30.55 11.11 0.00 3.02
4504 4928 5.949354 TGGGACTTTTTGAAAAAGACTCTCA 59.051 36.000 30.55 22.55 0.00 3.27
4505 4929 6.451064 TGGGACTTTTTGAAAAAGACTCTC 57.549 37.500 30.55 20.65 0.00 3.20
4506 4930 5.360999 CCTGGGACTTTTTGAAAAAGACTCT 59.639 40.000 30.55 12.96 0.00 3.24
4507 4931 5.451937 CCCTGGGACTTTTTGAAAAAGACTC 60.452 44.000 30.55 25.34 0.00 3.36
4508 4932 4.405680 CCCTGGGACTTTTTGAAAAAGACT 59.594 41.667 30.55 13.94 0.00 3.24
4509 4933 4.404394 TCCCTGGGACTTTTTGAAAAAGAC 59.596 41.667 30.55 24.86 0.00 3.01
4510 4934 4.615513 TCCCTGGGACTTTTTGAAAAAGA 58.384 39.130 30.55 12.07 0.00 2.52
4538 4962 9.286170 GTTTGTTTCTCTAGTCCTAGGATTTTT 57.714 33.333 16.27 4.11 34.06 1.94
4539 4963 8.437575 TGTTTGTTTCTCTAGTCCTAGGATTTT 58.562 33.333 16.27 6.69 34.06 1.82
4540 4964 7.878644 GTGTTTGTTTCTCTAGTCCTAGGATTT 59.121 37.037 16.27 9.33 34.06 2.17
4541 4965 7.387643 GTGTTTGTTTCTCTAGTCCTAGGATT 58.612 38.462 16.27 13.96 34.06 3.01
4542 4966 6.070710 GGTGTTTGTTTCTCTAGTCCTAGGAT 60.071 42.308 16.27 6.84 34.06 3.24
4543 4967 5.245526 GGTGTTTGTTTCTCTAGTCCTAGGA 59.754 44.000 7.62 7.62 34.06 2.94
4544 4968 5.011738 TGGTGTTTGTTTCTCTAGTCCTAGG 59.988 44.000 0.82 0.82 34.06 3.02
4545 4969 5.927115 GTGGTGTTTGTTTCTCTAGTCCTAG 59.073 44.000 0.00 0.00 34.56 3.02
4546 4970 5.221581 GGTGGTGTTTGTTTCTCTAGTCCTA 60.222 44.000 0.00 0.00 0.00 2.94
4547 4971 4.444449 GGTGGTGTTTGTTTCTCTAGTCCT 60.444 45.833 0.00 0.00 0.00 3.85
4548 4972 3.813724 GGTGGTGTTTGTTTCTCTAGTCC 59.186 47.826 0.00 0.00 0.00 3.85
4549 4973 3.813724 GGGTGGTGTTTGTTTCTCTAGTC 59.186 47.826 0.00 0.00 0.00 2.59
4550 4974 3.201266 TGGGTGGTGTTTGTTTCTCTAGT 59.799 43.478 0.00 0.00 0.00 2.57
4551 4975 3.815809 TGGGTGGTGTTTGTTTCTCTAG 58.184 45.455 0.00 0.00 0.00 2.43
4552 4976 3.935818 TGGGTGGTGTTTGTTTCTCTA 57.064 42.857 0.00 0.00 0.00 2.43
4553 4977 2.818751 TGGGTGGTGTTTGTTTCTCT 57.181 45.000 0.00 0.00 0.00 3.10
4554 4978 2.758423 ACTTGGGTGGTGTTTGTTTCTC 59.242 45.455 0.00 0.00 0.00 2.87
4555 4979 2.495669 CACTTGGGTGGTGTTTGTTTCT 59.504 45.455 0.00 0.00 39.59 2.52
4556 4980 2.232696 ACACTTGGGTGGTGTTTGTTTC 59.767 45.455 1.29 0.00 44.25 2.78
4557 4981 2.232696 GACACTTGGGTGGTGTTTGTTT 59.767 45.455 0.00 0.00 46.23 2.83
4558 4982 1.822371 GACACTTGGGTGGTGTTTGTT 59.178 47.619 0.00 0.00 46.23 2.83
4559 4983 1.005450 AGACACTTGGGTGGTGTTTGT 59.995 47.619 0.00 0.00 46.23 2.83
4560 4984 1.676006 GAGACACTTGGGTGGTGTTTG 59.324 52.381 0.00 0.00 46.23 2.93
4561 4985 1.283613 TGAGACACTTGGGTGGTGTTT 59.716 47.619 0.00 0.00 46.23 2.83
4562 4986 0.916086 TGAGACACTTGGGTGGTGTT 59.084 50.000 0.00 0.00 46.23 3.32
4564 4988 1.134098 AGTTGAGACACTTGGGTGGTG 60.134 52.381 1.29 0.00 46.85 4.17
4565 4989 1.213296 AGTTGAGACACTTGGGTGGT 58.787 50.000 1.29 0.00 46.85 4.16
4566 4990 2.348411 AAGTTGAGACACTTGGGTGG 57.652 50.000 1.29 0.00 46.85 4.61
4568 4992 3.366052 ACAAAGTTGAGACACTTGGGT 57.634 42.857 0.00 0.00 37.07 4.51
4569 4993 3.564225 GGTACAAAGTTGAGACACTTGGG 59.436 47.826 0.00 0.00 37.07 4.12
4570 4994 4.196193 TGGTACAAAGTTGAGACACTTGG 58.804 43.478 0.00 0.00 37.07 3.61
4571 4995 4.260784 GCTGGTACAAAGTTGAGACACTTG 60.261 45.833 0.00 0.00 38.70 3.16
4572 4996 3.877508 GCTGGTACAAAGTTGAGACACTT 59.122 43.478 0.00 0.00 38.70 3.16
4573 4997 3.134804 AGCTGGTACAAAGTTGAGACACT 59.865 43.478 0.00 0.00 38.70 3.55
4574 4998 3.467803 AGCTGGTACAAAGTTGAGACAC 58.532 45.455 0.00 0.00 38.70 3.67
4575 4999 3.838244 AGCTGGTACAAAGTTGAGACA 57.162 42.857 0.00 0.00 38.70 3.41
4576 5000 5.758784 ACTAAAGCTGGTACAAAGTTGAGAC 59.241 40.000 0.00 0.00 38.70 3.36
4577 5001 5.925509 ACTAAAGCTGGTACAAAGTTGAGA 58.074 37.500 0.00 0.00 38.70 3.27
4578 5002 7.907214 ATACTAAAGCTGGTACAAAGTTGAG 57.093 36.000 0.00 0.00 38.70 3.02
4579 5003 9.781633 TTTATACTAAAGCTGGTACAAAGTTGA 57.218 29.630 0.00 0.00 38.70 3.18
4601 5025 8.949421 ACTGTGATGGAGGGAGTATAATTTTAT 58.051 33.333 0.00 0.00 0.00 1.40
4602 5026 8.331931 ACTGTGATGGAGGGAGTATAATTTTA 57.668 34.615 0.00 0.00 0.00 1.52
4603 5027 7.213178 ACTGTGATGGAGGGAGTATAATTTT 57.787 36.000 0.00 0.00 0.00 1.82
4604 5028 6.831664 ACTGTGATGGAGGGAGTATAATTT 57.168 37.500 0.00 0.00 0.00 1.82
4605 5029 6.831664 AACTGTGATGGAGGGAGTATAATT 57.168 37.500 0.00 0.00 0.00 1.40
4606 5030 6.831664 AAACTGTGATGGAGGGAGTATAAT 57.168 37.500 0.00 0.00 0.00 1.28
4607 5031 7.130099 TCTAAACTGTGATGGAGGGAGTATAA 58.870 38.462 0.00 0.00 0.00 0.98
4608 5032 6.679542 TCTAAACTGTGATGGAGGGAGTATA 58.320 40.000 0.00 0.00 0.00 1.47
4609 5033 5.529289 TCTAAACTGTGATGGAGGGAGTAT 58.471 41.667 0.00 0.00 0.00 2.12
4620 5044 2.038557 ACCGTGCCTTCTAAACTGTGAT 59.961 45.455 0.00 0.00 0.00 3.06
4639 5063 3.243177 TGAAAACGCACGCAAATTTAACC 59.757 39.130 0.00 0.00 0.00 2.85
4645 5069 1.914634 TTGTGAAAACGCACGCAAAT 58.085 40.000 0.00 0.00 41.63 2.32
4659 5083 5.475719 CGTCCTAAACCTTGTCTATTGTGA 58.524 41.667 0.00 0.00 0.00 3.58
4662 5086 4.250464 TGCGTCCTAAACCTTGTCTATTG 58.750 43.478 0.00 0.00 0.00 1.90
4680 5104 6.260936 AGCTACTAGAAATAAATGCAATGCGT 59.739 34.615 0.00 0.00 0.00 5.24
4735 5159 0.729116 GCATTCACACTACGCATGCT 59.271 50.000 17.13 5.50 37.78 3.79
4766 5190 6.260936 GTGGTTATCTATTGGTTGTGAGATGG 59.739 42.308 0.00 0.00 31.25 3.51
4848 5272 8.410141 TCCGTTTCAAAATAAATGTCTCAAACT 58.590 29.630 0.00 0.00 0.00 2.66
4849 5273 8.568732 TCCGTTTCAAAATAAATGTCTCAAAC 57.431 30.769 0.00 0.00 0.00 2.93
4852 5276 6.072175 CCCTCCGTTTCAAAATAAATGTCTCA 60.072 38.462 0.00 0.00 0.00 3.27
4853 5277 6.150474 TCCCTCCGTTTCAAAATAAATGTCTC 59.850 38.462 0.00 0.00 0.00 3.36
4854 5278 6.007703 TCCCTCCGTTTCAAAATAAATGTCT 58.992 36.000 0.00 0.00 0.00 3.41
4855 5279 6.072119 ACTCCCTCCGTTTCAAAATAAATGTC 60.072 38.462 0.00 0.00 0.00 3.06
4856 5280 5.773176 ACTCCCTCCGTTTCAAAATAAATGT 59.227 36.000 0.00 0.00 0.00 2.71
4857 5281 6.267496 ACTCCCTCCGTTTCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
4859 5283 6.536447 AGTACTCCCTCCGTTTCAAAATAAA 58.464 36.000 0.00 0.00 0.00 1.40
4860 5284 6.117975 AGTACTCCCTCCGTTTCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
4861 5285 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
4862 5286 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
4863 5287 5.750352 ATAGTACTCCCTCCGTTTCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
4865 5289 6.718454 CCTATATAGTACTCCCTCCGTTTCAA 59.282 42.308 0.00 0.00 0.00 2.69
4866 5290 6.044754 TCCTATATAGTACTCCCTCCGTTTCA 59.955 42.308 0.00 0.00 0.00 2.69
4867 5291 6.479884 TCCTATATAGTACTCCCTCCGTTTC 58.520 44.000 0.00 0.00 0.00 2.78
4868 5292 6.460103 TCCTATATAGTACTCCCTCCGTTT 57.540 41.667 0.00 0.00 0.00 3.60
4869 5293 6.460103 TTCCTATATAGTACTCCCTCCGTT 57.540 41.667 0.00 0.00 0.00 4.44
4870 5294 6.460103 TTTCCTATATAGTACTCCCTCCGT 57.540 41.667 0.00 0.00 0.00 4.69
4871 5295 6.321690 CCATTTCCTATATAGTACTCCCTCCG 59.678 46.154 0.00 0.00 0.00 4.63
4872 5296 6.098552 GCCATTTCCTATATAGTACTCCCTCC 59.901 46.154 0.00 0.00 0.00 4.30
4873 5297 6.898521 AGCCATTTCCTATATAGTACTCCCTC 59.101 42.308 0.00 0.00 0.00 4.30
4875 5299 7.497773 AAGCCATTTCCTATATAGTACTCCC 57.502 40.000 0.00 0.00 0.00 4.30
4886 5310 5.831997 GCGACATTTTAAGCCATTTCCTAT 58.168 37.500 0.00 0.00 0.00 2.57
4993 5417 3.866910 GGTGCAACAAGCCATTGAATATG 59.133 43.478 0.00 0.00 44.83 1.78
4996 5422 1.337074 CGGTGCAACAAGCCATTGAAT 60.337 47.619 0.98 0.00 44.83 2.57
5046 5472 1.909700 TGGCTAGGGTTTTGAGCAAG 58.090 50.000 0.00 0.00 37.98 4.01
5077 5503 5.696270 AAGGCAAGTTGCATTTAGTTTTAGC 59.304 36.000 28.10 6.96 45.82 3.09
5079 5505 5.988561 CCAAGGCAAGTTGCATTTAGTTTTA 59.011 36.000 28.10 0.00 45.82 1.52
5123 5549 4.424566 CCAAGTGGGCGTGCATGC 62.425 66.667 22.99 22.99 0.00 4.06
5164 5592 1.374758 GTCAGCTGAACCTGGTCCG 60.375 63.158 20.19 0.00 33.64 4.79
5216 5644 8.718656 AGGATGCATCTCTAGGTTACTATTTTT 58.281 33.333 25.28 0.00 0.00 1.94
5270 5710 0.888619 GCCACTAAAGGAAAGGGCAC 59.111 55.000 0.00 0.00 41.02 5.01
5311 5751 9.163894 TCTCCTCATCATAATAAAGAATGGAGT 57.836 33.333 0.00 0.00 37.85 3.85
5326 5766 9.723601 GCTTTAGAATCTTATTCTCCTCATCAT 57.276 33.333 5.46 0.00 0.00 2.45
5363 5817 0.668535 TCGATCCATCTACACGCCAG 59.331 55.000 0.00 0.00 0.00 4.85
5368 5822 2.460918 CAACCGTCGATCCATCTACAC 58.539 52.381 0.00 0.00 0.00 2.90
5375 5832 1.206132 AGTTATGCAACCGTCGATCCA 59.794 47.619 0.00 0.00 35.05 3.41
5381 5838 6.913873 TCCTTTTATAGTTATGCAACCGTC 57.086 37.500 0.00 0.00 35.05 4.79
5397 5854 7.701539 TTGCAGATAAGCTTGATTCCTTTTA 57.298 32.000 9.86 0.00 34.99 1.52
5437 5894 5.511363 TCCCAAATTAATAACGGGTGTCAT 58.489 37.500 13.67 0.00 38.15 3.06
5479 6180 9.638300 GCTTCATTATAACGAGTATTTTGAGTG 57.362 33.333 0.00 0.00 0.00 3.51
5481 6182 9.855361 CTGCTTCATTATAACGAGTATTTTGAG 57.145 33.333 0.00 0.00 0.00 3.02
5482 6183 8.335356 GCTGCTTCATTATAACGAGTATTTTGA 58.665 33.333 0.00 0.00 0.00 2.69
5483 6184 8.122330 TGCTGCTTCATTATAACGAGTATTTTG 58.878 33.333 0.00 0.00 0.00 2.44
5484 6185 8.208718 TGCTGCTTCATTATAACGAGTATTTT 57.791 30.769 0.00 0.00 0.00 1.82
5486 6187 7.095060 CCATGCTGCTTCATTATAACGAGTATT 60.095 37.037 0.00 0.00 0.00 1.89
5487 6188 6.369890 CCATGCTGCTTCATTATAACGAGTAT 59.630 38.462 0.00 0.00 0.00 2.12
5489 6190 4.512944 CCATGCTGCTTCATTATAACGAGT 59.487 41.667 0.00 0.00 0.00 4.18
5490 6191 4.512944 ACCATGCTGCTTCATTATAACGAG 59.487 41.667 0.00 0.00 0.00 4.18
5491 6192 4.450976 ACCATGCTGCTTCATTATAACGA 58.549 39.130 0.00 0.00 0.00 3.85
5492 6193 4.818534 ACCATGCTGCTTCATTATAACG 57.181 40.909 0.00 0.00 0.00 3.18
5493 6194 5.894807 ACAACCATGCTGCTTCATTATAAC 58.105 37.500 0.00 0.00 0.00 1.89
5494 6195 7.255555 CCATACAACCATGCTGCTTCATTATAA 60.256 37.037 0.00 0.00 0.00 0.98
5495 6196 6.207221 CCATACAACCATGCTGCTTCATTATA 59.793 38.462 0.00 0.00 0.00 0.98
5501 6222 2.368439 TCCATACAACCATGCTGCTTC 58.632 47.619 0.00 0.00 0.00 3.86
5534 6258 6.149973 TCAGTGATTGCTAAACTTCTTCATGG 59.850 38.462 0.00 0.00 0.00 3.66
5535 6259 7.020010 GTCAGTGATTGCTAAACTTCTTCATG 58.980 38.462 0.00 0.00 0.00 3.07
5558 6282 2.459934 CGCCCAAACAGAAAAACAGTC 58.540 47.619 0.00 0.00 0.00 3.51
5596 6711 4.842948 TCTAGAGCCATGATATCCTGCTTT 59.157 41.667 10.83 8.58 31.23 3.51
5616 6731 2.905880 GCTACTCCGGCGCCTCTA 60.906 66.667 26.68 8.55 0.00 2.43
5655 6779 1.829523 TACTGGTGTTACGGTGGGCC 61.830 60.000 0.00 0.00 0.00 5.80
5668 6792 0.898320 ATCTTCGTGCTGCTACTGGT 59.102 50.000 0.00 0.00 0.00 4.00
5694 6818 1.376037 GGCGGTGAAGCTTAGCTGT 60.376 57.895 7.77 0.00 39.62 4.40
5733 6857 1.008309 GGAGATACGCGAGAGGTGC 60.008 63.158 15.93 0.00 0.00 5.01
5850 6989 4.781616 TCCCACGGCCCCACGATA 62.782 66.667 0.00 0.00 37.61 2.92
5994 7133 3.127030 CCACGAGCTCCAAGGAATTAAAC 59.873 47.826 8.47 0.00 0.00 2.01
6255 7399 1.202211 CCGCTGTACGTAGTGTGCATA 60.202 52.381 0.00 0.00 45.73 3.14
6256 7400 0.457853 CCGCTGTACGTAGTGTGCAT 60.458 55.000 0.00 0.00 45.73 3.96
6257 7401 1.081041 CCGCTGTACGTAGTGTGCA 60.081 57.895 0.00 0.00 45.73 4.57
6258 7402 0.387622 TTCCGCTGTACGTAGTGTGC 60.388 55.000 0.00 0.00 45.73 4.57
6294 7443 3.685139 TTGCTGTTTCACCCACAAAAA 57.315 38.095 0.00 0.00 0.00 1.94
6303 7452 1.466855 GTGCTCGTTTGCTGTTTCAC 58.533 50.000 0.00 0.00 0.00 3.18
6326 7475 2.444624 CGCGAGGTCCAACATGTCG 61.445 63.158 0.00 0.00 0.00 4.35
6434 7590 0.321919 ACTGCCAGTGCGATCAACAT 60.322 50.000 0.00 0.00 41.78 2.71
6439 7595 0.460811 TGATCACTGCCAGTGCGATC 60.461 55.000 20.05 17.63 45.54 3.69
6448 7604 1.959042 ATCGTTCCATGATCACTGCC 58.041 50.000 0.00 0.00 0.00 4.85
6449 7605 3.060272 CGTTATCGTTCCATGATCACTGC 60.060 47.826 0.00 0.00 0.00 4.40
6466 7622 2.093106 AGACGACCAAGCTCTCGTTAT 58.907 47.619 13.45 5.40 43.06 1.89
6487 7643 2.179517 CTGCAGAGACGGTCGACC 59.820 66.667 25.28 25.28 0.00 4.79
6488 7644 2.179517 CCTGCAGAGACGGTCGAC 59.820 66.667 17.39 7.13 0.00 4.20
6489 7645 2.814913 TAGCCTGCAGAGACGGTCGA 62.815 60.000 17.39 0.00 0.00 4.20
6492 7648 0.684479 TCATAGCCTGCAGAGACGGT 60.684 55.000 17.39 6.45 0.00 4.83
6494 7650 1.850377 CTTCATAGCCTGCAGAGACG 58.150 55.000 17.39 0.00 0.00 4.18
6495 7651 1.580815 GCTTCATAGCCTGCAGAGAC 58.419 55.000 17.39 4.08 41.74 3.36
6507 7663 0.894835 TGTCCTGCTCGTGCTTCATA 59.105 50.000 11.19 0.00 40.48 2.15
6603 7769 3.310774 GCATGCATGTACATTTCTCTCGT 59.689 43.478 26.79 0.00 0.00 4.18
6656 7866 5.684550 GGTTGAGAAAGTATGAACCGTTT 57.315 39.130 0.00 0.00 0.00 3.60
6677 7889 2.436646 CTGCCAGTACCTTGCCGG 60.437 66.667 0.00 0.00 39.35 6.13
6696 7908 2.711009 AGTTGAAGGGTCCATCAGAACA 59.289 45.455 0.00 0.00 31.73 3.18
6814 8059 7.537596 TTGGAATAAAAATTCTCAGCCTCAA 57.462 32.000 0.00 0.00 0.00 3.02
6888 8708 1.538047 ATGCCTTTCACTTCGCACAT 58.462 45.000 0.00 0.00 33.31 3.21
7348 9168 7.737525 AGATGACGTTTTCTATTCGTAGAAC 57.262 36.000 0.00 0.00 45.90 3.01
7356 9176 7.310664 TCAACGAGTAGATGACGTTTTCTATT 58.689 34.615 10.47 7.33 45.58 1.73
7366 9186 6.380095 AAGGTATCTCAACGAGTAGATGAC 57.620 41.667 0.00 0.00 34.36 3.06
7417 9237 6.639563 TGATACGATTCTCCTTGTGAAATCA 58.360 36.000 0.00 0.00 0.00 2.57
7437 9257 4.546570 CTTTGGTATGCGTCGATCTGATA 58.453 43.478 0.00 0.00 0.00 2.15
7487 9307 2.292785 TGCCTTGGAGATCTCTTCCTCT 60.293 50.000 21.81 0.00 0.00 3.69
7498 9318 3.691342 CGGTCCGTGCCTTGGAGA 61.691 66.667 2.08 0.00 35.82 3.71
7512 9332 3.574826 GCCTCTACCATTTCTCTATCGGT 59.425 47.826 0.00 0.00 0.00 4.69
7513 9333 3.366476 CGCCTCTACCATTTCTCTATCGG 60.366 52.174 0.00 0.00 0.00 4.18
7590 9411 2.183555 CGCGTGGGGGTTAGAGTC 59.816 66.667 0.00 0.00 0.00 3.36
7620 9441 2.590114 GGTACGGTTCCAGGTGCCT 61.590 63.158 0.00 0.00 36.19 4.75
7661 9483 3.754472 GGGACCCCATGCCCACAT 61.754 66.667 0.00 0.00 44.07 3.21
7683 9505 0.679505 TCACGGGCTCTATACCATGC 59.320 55.000 0.00 0.00 0.00 4.06
7685 9507 0.969894 GCTCACGGGCTCTATACCAT 59.030 55.000 0.00 0.00 0.00 3.55
7686 9508 0.396556 TGCTCACGGGCTCTATACCA 60.397 55.000 0.00 0.00 0.00 3.25
7707 9529 3.566322 TGTCAAAATTTACAGGACACCCG 59.434 43.478 9.49 0.00 33.88 5.28
7716 9538 7.487484 TCTTGCATCAGTTGTCAAAATTTACA 58.513 30.769 0.00 0.00 0.00 2.41
7719 9541 7.846644 TTTCTTGCATCAGTTGTCAAAATTT 57.153 28.000 0.00 0.00 0.00 1.82
7720 9542 7.711772 TCATTTCTTGCATCAGTTGTCAAAATT 59.288 29.630 0.00 0.00 0.00 1.82
7732 9554 3.367600 GCCATGTGTCATTTCTTGCATCA 60.368 43.478 0.00 0.00 0.00 3.07
7833 9655 5.065218 CCACATGCACCTTTCAAGTAGTATC 59.935 44.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.