Multiple sequence alignment - TraesCS6B01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G244200 chr6B 100.000 4330 0 0 1 4330 435580526 435584855 0.000000e+00 7997.0
1 TraesCS6B01G244200 chr6B 97.576 165 4 0 3494 3658 204337381 204337217 2.550000e-72 283.0
2 TraesCS6B01G244200 chr6B 93.023 172 12 0 3486 3657 468734826 468734655 7.190000e-63 252.0
3 TraesCS6B01G244200 chr6D 96.330 1962 42 7 1565 3496 273827747 273829708 0.000000e+00 3197.0
4 TraesCS6B01G244200 chr6D 93.548 434 6 7 811 1222 273827151 273827584 1.020000e-175 627.0
5 TraesCS6B01G244200 chr6D 94.545 330 16 2 3656 3983 273829709 273830038 3.860000e-140 508.0
6 TraesCS6B01G244200 chr6D 91.453 234 15 2 4039 4268 273830037 273830269 2.510000e-82 316.0
7 TraesCS6B01G244200 chr6D 92.814 167 12 0 3495 3661 447248794 447248960 4.330000e-60 243.0
8 TraesCS6B01G244200 chr6D 92.727 165 12 0 3493 3657 81746932 81746768 5.600000e-59 239.0
9 TraesCS6B01G244200 chr6D 89.247 186 18 2 3483 3667 266777467 266777651 9.360000e-57 231.0
10 TraesCS6B01G244200 chr6D 91.617 167 13 1 3495 3660 51023664 51023498 3.370000e-56 230.0
11 TraesCS6B01G244200 chr6D 90.533 169 16 0 3492 3660 95373263 95373431 1.570000e-54 224.0
12 TraesCS6B01G244200 chr6D 96.825 63 2 0 4268 4330 273830320 273830382 5.920000e-19 106.0
13 TraesCS6B01G244200 chr6A 97.828 1842 22 2 1527 3350 391251990 391253831 0.000000e+00 3164.0
14 TraesCS6B01G244200 chr6A 97.024 504 5 1 811 1304 391251492 391251995 0.000000e+00 839.0
15 TraesCS6B01G244200 chr6A 88.068 352 17 8 3656 3983 391254060 391254410 1.130000e-105 394.0
16 TraesCS6B01G244200 chr6A 94.372 231 12 1 4039 4268 391254409 391254639 1.920000e-93 353.0
17 TraesCS6B01G244200 chr6A 89.344 244 4 1 3275 3496 391253820 391254063 1.970000e-73 287.0
18 TraesCS6B01G244200 chr6A 89.840 187 16 3 3495 3681 499016325 499016142 2.010000e-58 237.0
19 TraesCS6B01G244200 chr6A 95.000 60 3 0 4268 4327 391254681 391254740 1.280000e-15 95.3
20 TraesCS6B01G244200 chr6A 97.561 41 1 0 4287 4327 391254745 391254785 2.160000e-08 71.3
21 TraesCS6B01G244200 chr6A 100.000 29 0 0 4007 4035 23230530 23230502 2.000000e-03 54.7
22 TraesCS6B01G244200 chr3B 92.450 808 57 4 1 806 709291766 709292571 0.000000e+00 1151.0
23 TraesCS6B01G244200 chr3B 91.043 815 63 5 1 811 647921372 647922180 0.000000e+00 1092.0
24 TraesCS6B01G244200 chr3B 90.571 806 75 1 2 806 15835852 15835047 0.000000e+00 1066.0
25 TraesCS6B01G244200 chr3B 92.437 238 11 5 1296 1532 369286114 369286345 2.500000e-87 333.0
26 TraesCS6B01G244200 chr2B 91.738 823 58 8 1 819 708824929 708825745 0.000000e+00 1134.0
27 TraesCS6B01G244200 chr2B 94.144 222 11 1 1303 1524 39465829 39465610 1.930000e-88 337.0
28 TraesCS6B01G244200 chr2B 96.341 164 6 0 3495 3658 754983956 754984119 1.980000e-68 270.0
29 TraesCS6B01G244200 chr2B 94.083 169 10 0 3493 3661 418664085 418664253 1.550000e-64 257.0
30 TraesCS6B01G244200 chr1D 91.481 810 68 1 3 812 4440599 4439791 0.000000e+00 1112.0
31 TraesCS6B01G244200 chr1D 90.857 175 15 1 3484 3657 452479991 452480165 2.600000e-57 233.0
32 TraesCS6B01G244200 chr1D 91.018 167 14 1 3495 3660 27020430 27020264 1.570000e-54 224.0
33 TraesCS6B01G244200 chr1D 91.411 163 14 0 3495 3657 27853669 27853507 1.570000e-54 224.0
34 TraesCS6B01G244200 chr1D 88.021 192 19 4 3486 3675 160451666 160451477 1.570000e-54 224.0
35 TraesCS6B01G244200 chr1D 91.018 167 14 1 3495 3660 299443153 299442987 1.570000e-54 224.0
36 TraesCS6B01G244200 chr1D 91.411 163 14 0 3495 3657 436432545 436432707 1.570000e-54 224.0
37 TraesCS6B01G244200 chr1D 91.018 167 14 1 3495 3660 454354903 454354737 1.570000e-54 224.0
38 TraesCS6B01G244200 chr1D 90.419 167 15 1 3495 3660 92718580 92718414 7.290000e-53 219.0
39 TraesCS6B01G244200 chr1D 90.419 167 15 1 3495 3660 227425463 227425297 7.290000e-53 219.0
40 TraesCS6B01G244200 chr5B 90.465 818 73 5 1 815 699409068 699409883 0.000000e+00 1074.0
41 TraesCS6B01G244200 chr5B 89.803 814 75 8 1 811 54844281 54845089 0.000000e+00 1037.0
42 TraesCS6B01G244200 chr5B 98.246 171 1 2 3492 3660 476918938 476919108 9.100000e-77 298.0
43 TraesCS6B01G244200 chr5B 85.714 112 14 2 4076 4186 603734310 603734200 2.740000e-22 117.0
44 TraesCS6B01G244200 chr5B 96.875 32 1 0 4001 4032 440532823 440532792 2.000000e-03 54.7
45 TraesCS6B01G244200 chr4B 90.271 812 71 7 2 809 575725231 575726038 0.000000e+00 1055.0
46 TraesCS6B01G244200 chr4B 93.642 173 11 0 3488 3660 461850257 461850085 4.300000e-65 259.0
47 TraesCS6B01G244200 chr4B 93.976 166 10 0 3492 3657 448896216 448896051 7.190000e-63 252.0
48 TraesCS6B01G244200 chr4B 79.412 102 17 2 4095 4192 425195474 425195373 7.770000e-08 69.4
49 TraesCS6B01G244200 chrUn 89.914 813 77 5 1 810 84023064 84023874 0.000000e+00 1042.0
50 TraesCS6B01G244200 chrUn 95.706 163 7 0 3495 3657 129563470 129563632 3.320000e-66 263.0
51 TraesCS6B01G244200 chrUn 96.875 32 1 0 4001 4032 371165664 371165633 2.000000e-03 54.7
52 TraesCS6B01G244200 chrUn 96.875 32 1 0 4001 4032 418078889 418078920 2.000000e-03 54.7
53 TraesCS6B01G244200 chr4D 93.644 236 11 2 1291 1525 12036544 12036312 2.480000e-92 350.0
54 TraesCS6B01G244200 chr4D 94.619 223 9 2 1303 1525 341032559 341032778 4.150000e-90 342.0
55 TraesCS6B01G244200 chr4D 93.252 163 11 0 3495 3657 19332431 19332269 1.560000e-59 241.0
56 TraesCS6B01G244200 chr4D 92.169 166 12 1 3495 3659 470149934 470150099 2.600000e-57 233.0
57 TraesCS6B01G244200 chr4D 91.617 167 13 1 3495 3660 429717629 429717795 3.370000e-56 230.0
58 TraesCS6B01G244200 chr3D 94.619 223 8 1 1304 1526 103628192 103627974 4.150000e-90 342.0
59 TraesCS6B01G244200 chr3D 91.463 246 15 4 1284 1526 595711369 595711611 2.500000e-87 333.0
60 TraesCS6B01G244200 chr3D 94.118 170 10 0 3492 3661 159789639 159789808 4.300000e-65 259.0
61 TraesCS6B01G244200 chr3D 93.252 163 11 0 3495 3657 596058975 596059137 1.560000e-59 241.0
62 TraesCS6B01G244200 chr3D 92.857 56 4 0 4143 4198 13293703 13293758 9.980000e-12 82.4
63 TraesCS6B01G244200 chr3D 94.444 36 1 1 4001 4035 597098258 597098293 2.000000e-03 54.7
64 TraesCS6B01G244200 chr1B 93.805 226 12 1 1297 1522 651566499 651566722 5.360000e-89 339.0
65 TraesCS6B01G244200 chr1B 94.064 219 9 2 1307 1525 304122945 304122731 3.230000e-86 329.0
66 TraesCS6B01G244200 chr1B 91.765 170 14 0 3495 3664 603293276 603293107 2.010000e-58 237.0
67 TraesCS6B01G244200 chr7D 93.043 230 11 3 1302 1530 615443619 615443394 8.980000e-87 331.0
68 TraesCS6B01G244200 chr7D 93.023 172 10 2 3492 3662 383903830 383904000 2.590000e-62 250.0
69 TraesCS6B01G244200 chr7B 95.294 170 7 1 3489 3657 741942527 741942696 7.140000e-68 268.0
70 TraesCS6B01G244200 chr7B 94.706 170 8 1 3489 3657 741871530 741871699 3.320000e-66 263.0
71 TraesCS6B01G244200 chr7B 86.207 58 8 0 4140 4197 172583882 172583939 3.610000e-06 63.9
72 TraesCS6B01G244200 chr7B 91.304 46 0 3 4001 4042 314392372 314392327 4.680000e-05 60.2
73 TraesCS6B01G244200 chr5A 94.578 166 9 0 3495 3660 269823457 269823292 1.550000e-64 257.0
74 TraesCS6B01G244200 chr5A 92.899 169 12 0 3492 3660 546778494 546778662 3.340000e-61 246.0
75 TraesCS6B01G244200 chr5A 85.185 81 10 2 4120 4199 613478147 613478068 9.980000e-12 82.4
76 TraesCS6B01G244200 chr7A 93.939 165 10 0 3495 3659 699482888 699482724 2.590000e-62 250.0
77 TraesCS6B01G244200 chr5D 92.814 167 12 0 3494 3660 220710672 220710506 4.330000e-60 243.0
78 TraesCS6B01G244200 chr5D 91.716 169 14 0 3491 3659 321383971 321384139 7.240000e-58 235.0
79 TraesCS6B01G244200 chr5D 91.716 169 14 0 3492 3660 498722072 498721904 7.240000e-58 235.0
80 TraesCS6B01G244200 chr3A 90.385 104 9 1 4098 4201 515736659 515736557 7.550000e-28 135.0
81 TraesCS6B01G244200 chr2D 84.466 103 15 1 4095 4197 547809294 547809193 2.760000e-17 100.0
82 TraesCS6B01G244200 chr4A 100.000 35 0 0 4001 4035 669246446 669246412 1.010000e-06 65.8
83 TraesCS6B01G244200 chr2A 100.000 28 0 0 4007 4034 310398545 310398572 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G244200 chr6B 435580526 435584855 4329 False 7997.000000 7997 100.0000 1 4330 1 chr6B.!!$F1 4329
1 TraesCS6B01G244200 chr6D 273827151 273830382 3231 False 950.800000 3197 94.5402 811 4330 5 chr6D.!!$F4 3519
2 TraesCS6B01G244200 chr6A 391251492 391254785 3293 False 743.371429 3164 94.1710 811 4327 7 chr6A.!!$F1 3516
3 TraesCS6B01G244200 chr3B 709291766 709292571 805 False 1151.000000 1151 92.4500 1 806 1 chr3B.!!$F3 805
4 TraesCS6B01G244200 chr3B 647921372 647922180 808 False 1092.000000 1092 91.0430 1 811 1 chr3B.!!$F2 810
5 TraesCS6B01G244200 chr3B 15835047 15835852 805 True 1066.000000 1066 90.5710 2 806 1 chr3B.!!$R1 804
6 TraesCS6B01G244200 chr2B 708824929 708825745 816 False 1134.000000 1134 91.7380 1 819 1 chr2B.!!$F2 818
7 TraesCS6B01G244200 chr1D 4439791 4440599 808 True 1112.000000 1112 91.4810 3 812 1 chr1D.!!$R1 809
8 TraesCS6B01G244200 chr5B 699409068 699409883 815 False 1074.000000 1074 90.4650 1 815 1 chr5B.!!$F3 814
9 TraesCS6B01G244200 chr5B 54844281 54845089 808 False 1037.000000 1037 89.8030 1 811 1 chr5B.!!$F1 810
10 TraesCS6B01G244200 chr4B 575725231 575726038 807 False 1055.000000 1055 90.2710 2 809 1 chr4B.!!$F1 807
11 TraesCS6B01G244200 chrUn 84023064 84023874 810 False 1042.000000 1042 89.9140 1 810 1 chrUn.!!$F1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 646 0.037734 TGGCTGAGAGAGGTCGTGTA 59.962 55.0 0.00 0.00 0.00 2.90 F
1401 1471 0.322546 GGGATGGCAACTTCGTCCTT 60.323 55.0 0.00 0.00 41.51 3.36 F
1479 1549 0.391927 TGCCATCTAAACCCGTTCGG 60.392 55.0 4.08 4.08 37.81 4.30 F
1491 1561 1.234615 CCGTTCGGGTTGTCATGCTT 61.235 55.0 3.04 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1530 0.391927 CCGAACGGGTTTAGATGGCA 60.392 55.000 5.25 0.0 0.0 4.92 R
2726 2841 1.003545 CACTGAGCTTTGTTGACACCG 60.004 52.381 0.00 0.0 0.0 4.94 R
3038 3153 2.386661 TTTCCTCGATGCTGAACTCC 57.613 50.000 0.00 0.0 0.0 3.85 R
3497 3698 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.542702 CTCCTTGCCCACACCCAAAT 60.543 55.000 0.00 0.00 0.00 2.32
40 41 0.251341 GCCCACACCCAAATCTGTCT 60.251 55.000 0.00 0.00 0.00 3.41
109 110 5.858381 TCTTGTAAGCAGATGTCAACTCTT 58.142 37.500 0.00 0.00 0.00 2.85
187 189 3.610242 CACGTAAGCAGATGACAACTCTC 59.390 47.826 0.00 0.00 45.62 3.20
199 205 6.593382 AGATGACAACTCTCTCTTTTACATGC 59.407 38.462 0.00 0.00 0.00 4.06
314 326 3.775910 ACTGCCTAGTGTTAGTAGGTGT 58.224 45.455 10.53 7.69 42.16 4.16
320 332 5.279356 GCCTAGTGTTAGTAGGTGTCAACTT 60.279 44.000 0.00 0.00 42.16 2.66
349 362 3.747854 TTGAAATCATGGCAACTGCAA 57.252 38.095 3.76 0.00 44.36 4.08
414 428 6.200854 GTGGCAACTCCTAAAGTTTTGAAATG 59.799 38.462 0.00 0.00 46.26 2.32
416 430 6.420903 GGCAACTCCTAAAGTTTTGAAATGAC 59.579 38.462 0.00 0.00 46.26 3.06
453 467 3.327757 ACCAGACCATACATGACAACTGT 59.672 43.478 0.00 0.00 0.00 3.55
500 514 1.070914 TGTCCGACATGGCAACTGTAA 59.929 47.619 0.00 0.00 37.80 2.41
505 519 3.190327 CCGACATGGCAACTGTAATTCAA 59.810 43.478 0.00 0.00 37.61 2.69
534 548 3.059393 GGCAACTACAGTTAAACGGACAC 60.059 47.826 0.00 0.00 36.32 3.67
631 646 0.037734 TGGCTGAGAGAGGTCGTGTA 59.962 55.000 0.00 0.00 0.00 2.90
658 673 2.208132 TCCATTTTGCCCACACGTAT 57.792 45.000 0.00 0.00 0.00 3.06
724 744 4.261825 GCTAGTTGTTTTGCCCACATGTAA 60.262 41.667 0.00 0.00 0.00 2.41
935 956 4.106925 CAGCCCCTCACCTCCTGC 62.107 72.222 0.00 0.00 0.00 4.85
1320 1390 9.642343 ATTTAGTTTAGGAATCCAATAACTCCC 57.358 33.333 14.12 0.00 0.00 4.30
1321 1391 5.681639 AGTTTAGGAATCCAATAACTCCCG 58.318 41.667 0.61 0.00 0.00 5.14
1322 1392 5.427481 AGTTTAGGAATCCAATAACTCCCGA 59.573 40.000 0.61 0.00 0.00 5.14
1323 1393 5.961398 TTAGGAATCCAATAACTCCCGAA 57.039 39.130 0.61 0.00 0.00 4.30
1324 1394 4.152284 AGGAATCCAATAACTCCCGAAC 57.848 45.455 0.61 0.00 0.00 3.95
1325 1395 2.870411 GGAATCCAATAACTCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
1326 1396 3.528532 GAATCCAATAACTCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
1327 1397 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
1328 1398 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
1339 1409 1.865725 CGAACGTTCGGATTTTGAGC 58.134 50.000 36.53 4.05 46.30 4.26
1340 1410 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
1341 1411 2.159707 CGAACGTTCGGATTTTGAGCAT 60.160 45.455 36.53 0.00 46.30 3.79
1342 1412 3.666902 CGAACGTTCGGATTTTGAGCATT 60.667 43.478 36.53 0.00 46.30 3.56
1343 1413 3.915437 ACGTTCGGATTTTGAGCATTT 57.085 38.095 0.00 0.00 0.00 2.32
1344 1414 3.821841 ACGTTCGGATTTTGAGCATTTC 58.178 40.909 0.00 0.00 0.00 2.17
1345 1415 2.840176 CGTTCGGATTTTGAGCATTTCG 59.160 45.455 0.00 0.00 0.00 3.46
1346 1416 3.666902 CGTTCGGATTTTGAGCATTTCGT 60.667 43.478 0.00 0.00 0.00 3.85
1347 1417 3.740044 TCGGATTTTGAGCATTTCGTC 57.260 42.857 0.00 0.00 0.00 4.20
1348 1418 2.418628 TCGGATTTTGAGCATTTCGTCC 59.581 45.455 0.00 0.00 0.00 4.79
1349 1419 2.477863 CGGATTTTGAGCATTTCGTCCC 60.478 50.000 0.00 0.00 0.00 4.46
1350 1420 2.477863 GGATTTTGAGCATTTCGTCCCG 60.478 50.000 0.00 0.00 0.00 5.14
1351 1421 1.885560 TTTTGAGCATTTCGTCCCGA 58.114 45.000 0.00 0.00 0.00 5.14
1352 1422 1.885560 TTTGAGCATTTCGTCCCGAA 58.114 45.000 0.00 0.00 44.28 4.30
1353 1423 1.153353 TTGAGCATTTCGTCCCGAAC 58.847 50.000 0.00 0.00 45.64 3.95
1364 1434 2.829928 CGTCCCGAACGTTTTTACATG 58.170 47.619 0.46 0.00 46.42 3.21
1365 1435 2.411806 CGTCCCGAACGTTTTTACATGG 60.412 50.000 0.46 0.00 46.42 3.66
1366 1436 1.536331 TCCCGAACGTTTTTACATGGC 59.464 47.619 0.46 0.00 0.00 4.40
1367 1437 1.267261 CCCGAACGTTTTTACATGGCA 59.733 47.619 0.46 0.00 0.00 4.92
1368 1438 2.287668 CCCGAACGTTTTTACATGGCAA 60.288 45.455 0.46 0.00 0.00 4.52
1369 1439 2.722116 CCGAACGTTTTTACATGGCAAC 59.278 45.455 0.46 0.00 0.00 4.17
1370 1440 3.549221 CCGAACGTTTTTACATGGCAACT 60.549 43.478 0.46 0.00 37.61 3.16
1371 1441 4.039032 CGAACGTTTTTACATGGCAACTT 58.961 39.130 0.46 0.00 37.61 2.66
1372 1442 4.501198 CGAACGTTTTTACATGGCAACTTT 59.499 37.500 0.46 0.00 37.61 2.66
1373 1443 5.681982 CGAACGTTTTTACATGGCAACTTTA 59.318 36.000 0.46 0.00 37.61 1.85
1374 1444 6.196724 CGAACGTTTTTACATGGCAACTTTAA 59.803 34.615 0.46 0.00 37.61 1.52
1375 1445 7.096394 CGAACGTTTTTACATGGCAACTTTAAT 60.096 33.333 0.46 0.00 37.61 1.40
1376 1446 8.426881 AACGTTTTTACATGGCAACTTTAATT 57.573 26.923 0.00 0.00 37.61 1.40
1377 1447 8.067780 ACGTTTTTACATGGCAACTTTAATTC 57.932 30.769 0.00 0.00 37.61 2.17
1378 1448 7.707035 ACGTTTTTACATGGCAACTTTAATTCA 59.293 29.630 0.00 0.00 37.61 2.57
1379 1449 8.707839 CGTTTTTACATGGCAACTTTAATTCAT 58.292 29.630 0.00 0.00 37.61 2.57
1382 1452 9.868277 TTTTACATGGCAACTTTAATTCATAGG 57.132 29.630 0.00 0.00 37.61 2.57
1383 1453 6.469782 ACATGGCAACTTTAATTCATAGGG 57.530 37.500 0.00 0.00 37.61 3.53
1384 1454 5.363580 ACATGGCAACTTTAATTCATAGGGG 59.636 40.000 0.00 0.00 37.61 4.79
1385 1455 5.199982 TGGCAACTTTAATTCATAGGGGA 57.800 39.130 0.00 0.00 37.61 4.81
1386 1456 5.776358 TGGCAACTTTAATTCATAGGGGAT 58.224 37.500 0.00 0.00 37.61 3.85
1387 1457 5.598005 TGGCAACTTTAATTCATAGGGGATG 59.402 40.000 0.00 0.00 35.24 3.51
1388 1458 5.011023 GGCAACTTTAATTCATAGGGGATGG 59.989 44.000 0.00 0.00 36.08 3.51
1389 1459 5.509670 GCAACTTTAATTCATAGGGGATGGC 60.510 44.000 0.00 0.00 36.08 4.40
1390 1460 5.402054 ACTTTAATTCATAGGGGATGGCA 57.598 39.130 0.00 0.00 36.08 4.92
1391 1461 5.776358 ACTTTAATTCATAGGGGATGGCAA 58.224 37.500 0.00 0.00 36.08 4.52
1392 1462 5.598417 ACTTTAATTCATAGGGGATGGCAAC 59.402 40.000 0.00 0.00 36.08 4.17
1393 1463 3.979501 AATTCATAGGGGATGGCAACT 57.020 42.857 0.00 0.00 36.08 3.16
1394 1464 3.979501 ATTCATAGGGGATGGCAACTT 57.020 42.857 0.00 0.00 36.08 2.66
1395 1465 3.297134 TTCATAGGGGATGGCAACTTC 57.703 47.619 0.00 0.00 39.93 3.01
1396 1466 1.140852 TCATAGGGGATGGCAACTTCG 59.859 52.381 0.00 0.00 41.51 3.79
1397 1467 1.134098 CATAGGGGATGGCAACTTCGT 60.134 52.381 0.00 0.00 41.51 3.85
1398 1468 0.539986 TAGGGGATGGCAACTTCGTC 59.460 55.000 0.00 0.00 41.51 4.20
1399 1469 1.749258 GGGGATGGCAACTTCGTCC 60.749 63.158 0.00 0.00 41.51 4.79
1400 1470 1.299976 GGGATGGCAACTTCGTCCT 59.700 57.895 0.00 0.00 41.51 3.85
1401 1471 0.322546 GGGATGGCAACTTCGTCCTT 60.323 55.000 0.00 0.00 41.51 3.36
1402 1472 1.534729 GGATGGCAACTTCGTCCTTT 58.465 50.000 0.00 0.00 41.51 3.11
1403 1473 1.886542 GGATGGCAACTTCGTCCTTTT 59.113 47.619 0.00 0.00 41.51 2.27
1404 1474 2.296190 GGATGGCAACTTCGTCCTTTTT 59.704 45.455 0.00 0.00 41.51 1.94
1405 1475 3.565516 GATGGCAACTTCGTCCTTTTTC 58.434 45.455 0.00 0.00 37.61 2.29
1406 1476 1.332375 TGGCAACTTCGTCCTTTTTCG 59.668 47.619 0.00 0.00 37.61 3.46
1407 1477 1.332686 GGCAACTTCGTCCTTTTTCGT 59.667 47.619 0.00 0.00 0.00 3.85
1408 1478 2.223409 GGCAACTTCGTCCTTTTTCGTT 60.223 45.455 0.00 0.00 0.00 3.85
1409 1479 3.431856 GCAACTTCGTCCTTTTTCGTTT 58.568 40.909 0.00 0.00 0.00 3.60
1410 1480 3.855379 GCAACTTCGTCCTTTTTCGTTTT 59.145 39.130 0.00 0.00 0.00 2.43
1411 1481 4.325204 GCAACTTCGTCCTTTTTCGTTTTT 59.675 37.500 0.00 0.00 0.00 1.94
1434 1504 6.998968 TTTTTGTCAGAAAATTGCCATGTT 57.001 29.167 0.00 0.00 0.00 2.71
1435 1505 6.998968 TTTTGTCAGAAAATTGCCATGTTT 57.001 29.167 0.00 0.00 0.00 2.83
1436 1506 6.601741 TTTGTCAGAAAATTGCCATGTTTC 57.398 33.333 0.00 0.00 0.00 2.78
1437 1507 4.630111 TGTCAGAAAATTGCCATGTTTCC 58.370 39.130 2.96 0.00 32.74 3.13
1438 1508 4.344679 TGTCAGAAAATTGCCATGTTTCCT 59.655 37.500 2.96 0.00 32.74 3.36
1439 1509 5.163322 TGTCAGAAAATTGCCATGTTTCCTT 60.163 36.000 2.96 0.00 32.74 3.36
1440 1510 6.041409 TGTCAGAAAATTGCCATGTTTCCTTA 59.959 34.615 2.96 0.00 32.74 2.69
1441 1511 6.928492 GTCAGAAAATTGCCATGTTTCCTTAA 59.072 34.615 2.96 0.00 32.74 1.85
1442 1512 7.603784 GTCAGAAAATTGCCATGTTTCCTTAAT 59.396 33.333 2.96 0.00 32.74 1.40
1443 1513 7.818930 TCAGAAAATTGCCATGTTTCCTTAATC 59.181 33.333 2.96 0.00 32.74 1.75
1444 1514 7.820872 CAGAAAATTGCCATGTTTCCTTAATCT 59.179 33.333 2.96 0.00 32.74 2.40
1445 1515 8.037166 AGAAAATTGCCATGTTTCCTTAATCTC 58.963 33.333 2.96 0.00 32.74 2.75
1446 1516 6.855763 AATTGCCATGTTTCCTTAATCTCA 57.144 33.333 0.00 0.00 0.00 3.27
1447 1517 5.643379 TTGCCATGTTTCCTTAATCTCAC 57.357 39.130 0.00 0.00 0.00 3.51
1448 1518 3.689161 TGCCATGTTTCCTTAATCTCACG 59.311 43.478 0.00 0.00 0.00 4.35
1449 1519 3.487544 GCCATGTTTCCTTAATCTCACGC 60.488 47.826 0.00 0.00 0.00 5.34
1450 1520 3.689161 CCATGTTTCCTTAATCTCACGCA 59.311 43.478 0.00 0.00 0.00 5.24
1451 1521 4.155826 CCATGTTTCCTTAATCTCACGCAA 59.844 41.667 0.00 0.00 0.00 4.85
1452 1522 5.335583 CCATGTTTCCTTAATCTCACGCAAA 60.336 40.000 0.00 0.00 0.00 3.68
1453 1523 5.103290 TGTTTCCTTAATCTCACGCAAAC 57.897 39.130 0.00 0.00 0.00 2.93
1454 1524 4.819630 TGTTTCCTTAATCTCACGCAAACT 59.180 37.500 0.00 0.00 0.00 2.66
1455 1525 5.992829 TGTTTCCTTAATCTCACGCAAACTA 59.007 36.000 0.00 0.00 0.00 2.24
1456 1526 6.483974 TGTTTCCTTAATCTCACGCAAACTAA 59.516 34.615 0.00 0.00 0.00 2.24
1457 1527 7.012515 TGTTTCCTTAATCTCACGCAAACTAAA 59.987 33.333 0.00 0.00 0.00 1.85
1458 1528 6.476243 TCCTTAATCTCACGCAAACTAAAC 57.524 37.500 0.00 0.00 0.00 2.01
1459 1529 6.228258 TCCTTAATCTCACGCAAACTAAACT 58.772 36.000 0.00 0.00 0.00 2.66
1460 1530 6.708949 TCCTTAATCTCACGCAAACTAAACTT 59.291 34.615 0.00 0.00 0.00 2.66
1461 1531 6.797033 CCTTAATCTCACGCAAACTAAACTTG 59.203 38.462 0.00 0.00 0.00 3.16
1462 1532 3.602390 TCTCACGCAAACTAAACTTGC 57.398 42.857 0.00 0.00 44.62 4.01
1463 1533 2.289547 TCTCACGCAAACTAAACTTGCC 59.710 45.455 2.21 0.00 45.15 4.52
1464 1534 2.017782 TCACGCAAACTAAACTTGCCA 58.982 42.857 2.21 0.00 45.15 4.92
1465 1535 2.621055 TCACGCAAACTAAACTTGCCAT 59.379 40.909 2.21 0.00 45.15 4.40
1466 1536 2.979813 CACGCAAACTAAACTTGCCATC 59.020 45.455 2.21 0.00 45.15 3.51
1467 1537 2.884639 ACGCAAACTAAACTTGCCATCT 59.115 40.909 2.21 0.00 45.15 2.90
1468 1538 4.069304 ACGCAAACTAAACTTGCCATCTA 58.931 39.130 2.21 0.00 45.15 1.98
1469 1539 4.517453 ACGCAAACTAAACTTGCCATCTAA 59.483 37.500 2.21 0.00 45.15 2.10
1470 1540 5.009210 ACGCAAACTAAACTTGCCATCTAAA 59.991 36.000 2.21 0.00 45.15 1.85
1471 1541 5.342259 CGCAAACTAAACTTGCCATCTAAAC 59.658 40.000 2.21 0.00 45.15 2.01
1472 1542 5.633601 GCAAACTAAACTTGCCATCTAAACC 59.366 40.000 0.00 0.00 42.74 3.27
1473 1543 5.977489 AACTAAACTTGCCATCTAAACCC 57.023 39.130 0.00 0.00 0.00 4.11
1474 1544 4.007659 ACTAAACTTGCCATCTAAACCCG 58.992 43.478 0.00 0.00 0.00 5.28
1475 1545 2.579410 AACTTGCCATCTAAACCCGT 57.421 45.000 0.00 0.00 0.00 5.28
1476 1546 2.579410 ACTTGCCATCTAAACCCGTT 57.421 45.000 0.00 0.00 0.00 4.44
1477 1547 2.433436 ACTTGCCATCTAAACCCGTTC 58.567 47.619 0.00 0.00 0.00 3.95
1478 1548 1.396996 CTTGCCATCTAAACCCGTTCG 59.603 52.381 0.00 0.00 0.00 3.95
1479 1549 0.391927 TGCCATCTAAACCCGTTCGG 60.392 55.000 4.08 4.08 37.81 4.30
1488 1558 3.573558 CCCGTTCGGGTTGTCATG 58.426 61.111 20.65 0.00 40.49 3.07
1489 1559 2.686816 CCCGTTCGGGTTGTCATGC 61.687 63.158 20.65 0.00 40.49 4.06
1490 1560 1.671054 CCGTTCGGGTTGTCATGCT 60.671 57.895 3.04 0.00 0.00 3.79
1491 1561 1.234615 CCGTTCGGGTTGTCATGCTT 61.235 55.000 3.04 0.00 0.00 3.91
1492 1562 1.434555 CGTTCGGGTTGTCATGCTTA 58.565 50.000 0.00 0.00 0.00 3.09
1493 1563 1.801771 CGTTCGGGTTGTCATGCTTAA 59.198 47.619 0.00 0.00 0.00 1.85
1494 1564 2.412325 CGTTCGGGTTGTCATGCTTAAC 60.412 50.000 0.00 0.00 0.00 2.01
1495 1565 2.812011 GTTCGGGTTGTCATGCTTAACT 59.188 45.455 0.00 0.00 0.00 2.24
1496 1566 2.695359 TCGGGTTGTCATGCTTAACTC 58.305 47.619 0.00 0.00 0.00 3.01
1497 1567 1.737793 CGGGTTGTCATGCTTAACTCC 59.262 52.381 0.00 0.00 0.00 3.85
1498 1568 2.092323 GGGTTGTCATGCTTAACTCCC 58.908 52.381 0.00 0.00 0.00 4.30
1499 1569 1.737793 GGTTGTCATGCTTAACTCCCG 59.262 52.381 0.00 0.00 0.00 5.14
1500 1570 2.614481 GGTTGTCATGCTTAACTCCCGA 60.614 50.000 0.00 0.00 0.00 5.14
1501 1571 3.071479 GTTGTCATGCTTAACTCCCGAA 58.929 45.455 0.00 0.00 0.00 4.30
1502 1572 2.695359 TGTCATGCTTAACTCCCGAAC 58.305 47.619 0.00 0.00 0.00 3.95
1503 1573 1.659098 GTCATGCTTAACTCCCGAACG 59.341 52.381 0.00 0.00 0.00 3.95
1504 1574 1.274167 TCATGCTTAACTCCCGAACGT 59.726 47.619 0.00 0.00 0.00 3.99
1505 1575 2.073816 CATGCTTAACTCCCGAACGTT 58.926 47.619 0.00 0.00 0.00 3.99
1506 1576 1.787012 TGCTTAACTCCCGAACGTTC 58.213 50.000 18.47 18.47 0.00 3.95
1521 1591 6.190287 CGAACGTTCGGGAGTTATAATTAC 57.810 41.667 36.53 2.36 46.30 1.89
1522 1592 5.173854 CGAACGTTCGGGAGTTATAATTACC 59.826 44.000 36.53 0.00 46.30 2.85
1523 1593 4.610945 ACGTTCGGGAGTTATAATTACCG 58.389 43.478 22.31 22.31 42.45 4.02
1524 1594 4.097892 ACGTTCGGGAGTTATAATTACCGT 59.902 41.667 25.76 8.70 41.82 4.83
1525 1595 5.043248 CGTTCGGGAGTTATAATTACCGTT 58.957 41.667 25.76 0.00 41.82 4.44
1532 1602 9.696917 CGGGAGTTATAATTACCGTTAGTTTAT 57.303 33.333 20.56 0.00 36.78 1.40
1541 1611 4.895668 ACCGTTAGTTTATTGGTCTCCA 57.104 40.909 0.00 0.00 0.00 3.86
1557 1627 4.381292 GGTCTCCAATTTGAATTGCCTCAG 60.381 45.833 10.26 4.56 43.38 3.35
1976 2091 5.059161 GCAGATGCTGATGATTTACTGGTA 58.941 41.667 0.00 0.00 38.21 3.25
2102 2217 2.511600 GCGGTAGCTGCACGGATT 60.512 61.111 3.61 0.00 41.01 3.01
2184 2299 2.688446 TCTCGATATGCTGAAGGTTCGT 59.312 45.455 0.00 0.00 0.00 3.85
2726 2841 8.538701 CCTATGATGGCCTATATGGAGAATATC 58.461 40.741 3.32 0.00 38.35 1.63
3038 3153 3.071602 TCACAGAGTTTTTCCTGGAGAGG 59.928 47.826 0.00 0.00 41.39 3.69
3496 3697 9.994432 CATTTGAGAGGAACAGTTTTGATATAC 57.006 33.333 0.00 0.00 0.00 1.47
3497 3698 9.965902 ATTTGAGAGGAACAGTTTTGATATACT 57.034 29.630 0.00 0.00 0.00 2.12
3498 3699 9.793259 TTTGAGAGGAACAGTTTTGATATACTT 57.207 29.630 0.00 0.00 0.00 2.24
3499 3700 9.436957 TTGAGAGGAACAGTTTTGATATACTTC 57.563 33.333 0.00 0.00 0.00 3.01
3500 3701 8.041323 TGAGAGGAACAGTTTTGATATACTTCC 58.959 37.037 0.00 0.00 0.00 3.46
3501 3702 8.152023 AGAGGAACAGTTTTGATATACTTCCT 57.848 34.615 0.00 0.00 35.93 3.36
3502 3703 8.261522 AGAGGAACAGTTTTGATATACTTCCTC 58.738 37.037 13.08 13.08 43.07 3.71
3503 3704 7.339482 AGGAACAGTTTTGATATACTTCCTCC 58.661 38.462 0.00 0.00 30.64 4.30
3504 3705 6.258068 GGAACAGTTTTGATATACTTCCTCCG 59.742 42.308 0.00 0.00 0.00 4.63
3505 3706 6.295719 ACAGTTTTGATATACTTCCTCCGT 57.704 37.500 0.00 0.00 0.00 4.69
3506 3707 6.708285 ACAGTTTTGATATACTTCCTCCGTT 58.292 36.000 0.00 0.00 0.00 4.44
3507 3708 6.817140 ACAGTTTTGATATACTTCCTCCGTTC 59.183 38.462 0.00 0.00 0.00 3.95
3508 3709 6.258068 CAGTTTTGATATACTTCCTCCGTTCC 59.742 42.308 0.00 0.00 0.00 3.62
3509 3710 6.156429 AGTTTTGATATACTTCCTCCGTTCCT 59.844 38.462 0.00 0.00 0.00 3.36
3510 3711 7.343833 AGTTTTGATATACTTCCTCCGTTCCTA 59.656 37.037 0.00 0.00 0.00 2.94
3511 3712 7.664552 TTTGATATACTTCCTCCGTTCCTAA 57.335 36.000 0.00 0.00 0.00 2.69
3512 3713 7.664552 TTGATATACTTCCTCCGTTCCTAAA 57.335 36.000 0.00 0.00 0.00 1.85
3513 3714 7.850935 TGATATACTTCCTCCGTTCCTAAAT 57.149 36.000 0.00 0.00 0.00 1.40
3514 3715 8.945195 TGATATACTTCCTCCGTTCCTAAATA 57.055 34.615 0.00 0.00 0.00 1.40
3515 3716 9.543231 TGATATACTTCCTCCGTTCCTAAATAT 57.457 33.333 0.00 0.00 0.00 1.28
3519 3720 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3520 3721 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3521 3722 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3522 3723 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3523 3724 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3524 3725 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
3525 3726 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3571 3772 9.890629 ATATACGGATGTATGTAGATGCATTTT 57.109 29.630 0.00 0.00 41.37 1.82
3573 3774 9.719355 ATACGGATGTATGTAGATGCATTTTAA 57.281 29.630 0.00 0.00 39.81 1.52
3574 3775 8.087982 ACGGATGTATGTAGATGCATTTTAAG 57.912 34.615 0.00 0.00 35.26 1.85
3575 3776 7.715249 ACGGATGTATGTAGATGCATTTTAAGT 59.285 33.333 0.00 0.14 35.26 2.24
3576 3777 8.011673 CGGATGTATGTAGATGCATTTTAAGTG 58.988 37.037 0.00 0.00 35.26 3.16
3577 3778 8.840321 GGATGTATGTAGATGCATTTTAAGTGT 58.160 33.333 0.00 0.00 35.26 3.55
3578 3779 9.655769 GATGTATGTAGATGCATTTTAAGTGTG 57.344 33.333 0.00 0.00 35.26 3.82
3579 3780 7.984391 TGTATGTAGATGCATTTTAAGTGTGG 58.016 34.615 0.00 0.00 0.00 4.17
3580 3781 7.826744 TGTATGTAGATGCATTTTAAGTGTGGA 59.173 33.333 0.00 0.00 0.00 4.02
3581 3782 7.886629 ATGTAGATGCATTTTAAGTGTGGAT 57.113 32.000 0.00 0.00 0.00 3.41
3582 3783 7.701539 TGTAGATGCATTTTAAGTGTGGATT 57.298 32.000 0.00 0.00 0.00 3.01
3583 3784 7.761409 TGTAGATGCATTTTAAGTGTGGATTC 58.239 34.615 0.00 0.00 0.00 2.52
3584 3785 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
3585 3786 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
3586 3787 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
3587 3788 8.316214 AGATGCATTTTAAGTGTGGATTCATTT 58.684 29.630 0.00 0.00 0.00 2.32
3588 3789 9.585099 GATGCATTTTAAGTGTGGATTCATTTA 57.415 29.630 0.00 0.00 0.00 1.40
3590 3791 9.941325 TGCATTTTAAGTGTGGATTCATTTATT 57.059 25.926 0.00 0.00 0.00 1.40
3595 3796 9.995003 TTTAAGTGTGGATTCATTTATTTTGCT 57.005 25.926 0.00 0.00 0.00 3.91
3596 3797 9.638239 TTAAGTGTGGATTCATTTATTTTGCTC 57.362 29.630 0.00 0.00 0.00 4.26
3597 3798 6.633856 AGTGTGGATTCATTTATTTTGCTCC 58.366 36.000 0.00 0.00 0.00 4.70
3598 3799 5.516339 GTGTGGATTCATTTATTTTGCTCCG 59.484 40.000 0.00 0.00 0.00 4.63
3599 3800 5.184864 TGTGGATTCATTTATTTTGCTCCGT 59.815 36.000 0.00 0.00 0.00 4.69
3600 3801 6.375736 TGTGGATTCATTTATTTTGCTCCGTA 59.624 34.615 0.00 0.00 0.00 4.02
3601 3802 7.068103 TGTGGATTCATTTATTTTGCTCCGTAT 59.932 33.333 0.00 0.00 0.00 3.06
3602 3803 7.379529 GTGGATTCATTTATTTTGCTCCGTATG 59.620 37.037 0.00 0.00 0.00 2.39
3603 3804 7.068103 TGGATTCATTTATTTTGCTCCGTATGT 59.932 33.333 0.00 0.00 0.00 2.29
3604 3805 8.564574 GGATTCATTTATTTTGCTCCGTATGTA 58.435 33.333 0.00 0.00 0.00 2.29
3605 3806 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
3606 3807 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
3607 3808 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
3608 3809 6.913873 TTTATTTTGCTCCGTATGTAGTCC 57.086 37.500 0.00 0.00 0.00 3.85
3609 3810 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3610 3811 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3611 3812 3.728076 TTGCTCCGTATGTAGTCCATC 57.272 47.619 0.00 0.00 34.86 3.51
3612 3813 2.945456 TGCTCCGTATGTAGTCCATCT 58.055 47.619 0.00 0.00 34.86 2.90
3613 3814 4.094830 TGCTCCGTATGTAGTCCATCTA 57.905 45.455 0.00 0.00 34.86 1.98
3614 3815 4.466827 TGCTCCGTATGTAGTCCATCTAA 58.533 43.478 0.00 0.00 34.86 2.10
3615 3816 5.077564 TGCTCCGTATGTAGTCCATCTAAT 58.922 41.667 0.00 0.00 34.86 1.73
3616 3817 5.048013 TGCTCCGTATGTAGTCCATCTAATG 60.048 44.000 0.00 0.00 34.86 1.90
3650 3851 8.943909 ATAAAGACTTACATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3651 3852 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3652 3853 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3653 3854 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3654 3855 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3684 3885 3.885484 ACTTCGTCATGCTCTTTTGTG 57.115 42.857 0.00 0.00 0.00 3.33
3695 3896 2.278466 TTTTGTGCTTGCACGGCG 60.278 55.556 18.99 4.80 0.00 6.46
3766 3967 2.851263 TACAGTTGGTGGCTTAGGTG 57.149 50.000 0.00 0.00 0.00 4.00
3799 4031 2.642311 TGACTTCCCTCAGTTGGCAATA 59.358 45.455 1.92 0.00 0.00 1.90
3850 4083 3.004944 TCTTGTTGGCCCGTTTATGTTTC 59.995 43.478 0.00 0.00 0.00 2.78
3948 4182 8.734593 ATAAAATGCTCTACTCCTTCCTATCT 57.265 34.615 0.00 0.00 0.00 1.98
3951 4185 7.716799 AATGCTCTACTCCTTCCTATCTATG 57.283 40.000 0.00 0.00 0.00 2.23
3953 4187 6.242396 TGCTCTACTCCTTCCTATCTATGTC 58.758 44.000 0.00 0.00 0.00 3.06
3981 4215 5.294799 TGACGCACACTTTGTACAACTTTAT 59.705 36.000 8.07 0.00 0.00 1.40
3982 4216 6.479331 TGACGCACACTTTGTACAACTTTATA 59.521 34.615 8.07 0.00 0.00 0.98
3983 4217 7.171848 TGACGCACACTTTGTACAACTTTATAT 59.828 33.333 8.07 0.00 0.00 0.86
3984 4218 7.867752 ACGCACACTTTGTACAACTTTATATT 58.132 30.769 8.07 0.00 0.00 1.28
3985 4219 8.013378 ACGCACACTTTGTACAACTTTATATTC 58.987 33.333 8.07 0.00 0.00 1.75
3986 4220 7.480542 CGCACACTTTGTACAACTTTATATTCC 59.519 37.037 8.07 0.00 0.00 3.01
3987 4221 7.753580 GCACACTTTGTACAACTTTATATTCCC 59.246 37.037 8.07 0.00 0.00 3.97
3988 4222 9.010029 CACACTTTGTACAACTTTATATTCCCT 57.990 33.333 8.07 0.00 0.00 4.20
3989 4223 9.227777 ACACTTTGTACAACTTTATATTCCCTC 57.772 33.333 8.07 0.00 0.00 4.30
3990 4224 8.674607 CACTTTGTACAACTTTATATTCCCTCC 58.325 37.037 8.07 0.00 0.00 4.30
3991 4225 8.387813 ACTTTGTACAACTTTATATTCCCTCCA 58.612 33.333 8.07 0.00 0.00 3.86
3992 4226 9.408648 CTTTGTACAACTTTATATTCCCTCCAT 57.591 33.333 8.07 0.00 0.00 3.41
3993 4227 8.974060 TTGTACAACTTTATATTCCCTCCATC 57.026 34.615 3.59 0.00 0.00 3.51
3994 4228 7.514721 TGTACAACTTTATATTCCCTCCATCC 58.485 38.462 0.00 0.00 0.00 3.51
3995 4229 5.953571 ACAACTTTATATTCCCTCCATCCC 58.046 41.667 0.00 0.00 0.00 3.85
3996 4230 5.162980 ACAACTTTATATTCCCTCCATCCCC 60.163 44.000 0.00 0.00 0.00 4.81
3997 4231 4.587475 ACTTTATATTCCCTCCATCCCCA 58.413 43.478 0.00 0.00 0.00 4.96
3998 4232 5.180927 ACTTTATATTCCCTCCATCCCCAT 58.819 41.667 0.00 0.00 0.00 4.00
3999 4233 6.347497 ACTTTATATTCCCTCCATCCCCATA 58.653 40.000 0.00 0.00 0.00 2.74
4000 4234 6.980309 ACTTTATATTCCCTCCATCCCCATAT 59.020 38.462 0.00 0.00 0.00 1.78
4001 4235 8.142238 ACTTTATATTCCCTCCATCCCCATATA 58.858 37.037 0.00 0.00 0.00 0.86
4002 4236 9.187376 CTTTATATTCCCTCCATCCCCATATAT 57.813 37.037 0.00 0.00 0.00 0.86
4003 4237 8.757307 TTATATTCCCTCCATCCCCATATATC 57.243 38.462 0.00 0.00 0.00 1.63
4004 4238 4.735309 TTCCCTCCATCCCCATATATCT 57.265 45.455 0.00 0.00 0.00 1.98
4005 4239 5.849513 TTCCCTCCATCCCCATATATCTA 57.150 43.478 0.00 0.00 0.00 1.98
4006 4240 5.849513 TCCCTCCATCCCCATATATCTAA 57.150 43.478 0.00 0.00 0.00 2.10
4007 4241 5.538877 TCCCTCCATCCCCATATATCTAAC 58.461 45.833 0.00 0.00 0.00 2.34
4008 4242 5.018413 TCCCTCCATCCCCATATATCTAACA 59.982 44.000 0.00 0.00 0.00 2.41
4009 4243 5.731187 CCCTCCATCCCCATATATCTAACAA 59.269 44.000 0.00 0.00 0.00 2.83
4010 4244 6.217487 CCCTCCATCCCCATATATCTAACAAA 59.783 42.308 0.00 0.00 0.00 2.83
4011 4245 7.091811 CCCTCCATCCCCATATATCTAACAAAT 60.092 40.741 0.00 0.00 0.00 2.32
4012 4246 7.995488 CCTCCATCCCCATATATCTAACAAATC 59.005 40.741 0.00 0.00 0.00 2.17
4013 4247 8.700145 TCCATCCCCATATATCTAACAAATCT 57.300 34.615 0.00 0.00 0.00 2.40
4014 4248 9.797732 TCCATCCCCATATATCTAACAAATCTA 57.202 33.333 0.00 0.00 0.00 1.98
4018 4252 9.268282 TCCCCATATATCTAACAAATCTAGGAC 57.732 37.037 0.00 0.00 0.00 3.85
4019 4253 9.046846 CCCCATATATCTAACAAATCTAGGACA 57.953 37.037 0.00 0.00 0.00 4.02
4029 4263 9.846248 CTAACAAATCTAGGACAAGAATTTTGG 57.154 33.333 0.00 0.00 33.04 3.28
4030 4264 7.232118 ACAAATCTAGGACAAGAATTTTGGG 57.768 36.000 0.00 0.00 33.04 4.12
4031 4265 7.010160 ACAAATCTAGGACAAGAATTTTGGGA 58.990 34.615 0.00 0.00 33.04 4.37
4032 4266 7.039714 ACAAATCTAGGACAAGAATTTTGGGAC 60.040 37.037 0.00 0.00 33.04 4.46
4033 4267 5.576563 TCTAGGACAAGAATTTTGGGACA 57.423 39.130 0.00 0.00 0.00 4.02
4034 4268 5.560724 TCTAGGACAAGAATTTTGGGACAG 58.439 41.667 0.00 0.00 42.39 3.51
4035 4269 3.500343 AGGACAAGAATTTTGGGACAGG 58.500 45.455 5.68 0.00 42.39 4.00
4036 4270 3.140144 AGGACAAGAATTTTGGGACAGGA 59.860 43.478 5.68 0.00 42.39 3.86
4037 4271 3.507622 GGACAAGAATTTTGGGACAGGAG 59.492 47.826 5.68 0.00 42.39 3.69
4071 4305 2.490115 GTCAATTAACATGGGTCGGCAA 59.510 45.455 0.00 0.00 0.00 4.52
4282 4572 5.087323 TCCCAGGGATGTATTGTAGATCTC 58.913 45.833 3.01 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 5.474578 AGAGTTGACATCTGCTTACAAGA 57.525 39.130 0.00 0.00 0.00 3.02
109 110 3.322254 ACACATGGCAATTCCGGTAAAAA 59.678 39.130 0.00 0.00 37.80 1.94
117 119 2.877168 TGCAAAAACACATGGCAATTCC 59.123 40.909 0.00 0.00 0.00 3.01
320 332 7.652909 CAGTTGCCATGATTTCAAAACTTTAGA 59.347 33.333 0.00 0.00 0.00 2.10
414 428 1.000607 TGGTCTACTGCAGTTGTCGTC 60.001 52.381 27.06 14.03 0.00 4.20
416 430 1.269723 TCTGGTCTACTGCAGTTGTCG 59.730 52.381 27.06 11.40 0.00 4.35
453 467 2.284754 TTGCCATGGTTGCTCAACTA 57.715 45.000 14.67 6.96 40.94 2.24
500 514 3.407698 TGTAGTTGCCATGTCGTTGAAT 58.592 40.909 0.00 0.00 0.00 2.57
505 519 2.543777 AACTGTAGTTGCCATGTCGT 57.456 45.000 0.00 0.00 36.80 4.34
534 548 3.300013 GGTCCGGACCCTCTTCAG 58.700 66.667 39.24 0.00 45.68 3.02
631 646 1.111277 GGGCAAAATGGATAACGCCT 58.889 50.000 0.00 0.00 39.53 5.52
658 673 2.967397 CGGTCCCTCTTACACGCA 59.033 61.111 0.00 0.00 0.00 5.24
665 680 0.395312 TTTTTCTCGCGGTCCCTCTT 59.605 50.000 6.13 0.00 0.00 2.85
724 744 1.120530 AGAGGACCAGTTCACACGTT 58.879 50.000 0.00 0.00 0.00 3.99
732 752 3.201266 TGTGGTGTTTAAGAGGACCAGTT 59.799 43.478 0.00 0.00 39.17 3.16
840 860 7.148086 CCCGAAACTGAAATATCTCCAATTTCA 60.148 37.037 10.00 10.00 46.08 2.69
935 956 2.112190 GAGGGGGTGAAGGAAGAGTAG 58.888 57.143 0.00 0.00 0.00 2.57
1297 1367 6.612456 TCGGGAGTTATTGGATTCCTAAACTA 59.388 38.462 14.06 1.94 0.00 2.24
1298 1368 5.427481 TCGGGAGTTATTGGATTCCTAAACT 59.573 40.000 14.00 14.00 0.00 2.66
1299 1369 5.677567 TCGGGAGTTATTGGATTCCTAAAC 58.322 41.667 3.95 5.88 0.00 2.01
1300 1370 5.961398 TCGGGAGTTATTGGATTCCTAAA 57.039 39.130 3.95 0.00 0.00 1.85
1301 1371 5.677567 GTTCGGGAGTTATTGGATTCCTAA 58.322 41.667 3.95 0.00 0.00 2.69
1302 1372 4.202182 CGTTCGGGAGTTATTGGATTCCTA 60.202 45.833 3.95 0.00 0.00 2.94
1303 1373 3.431766 CGTTCGGGAGTTATTGGATTCCT 60.432 47.826 3.95 0.00 0.00 3.36
1304 1374 2.870411 CGTTCGGGAGTTATTGGATTCC 59.130 50.000 0.00 0.00 0.00 3.01
1305 1375 3.528532 ACGTTCGGGAGTTATTGGATTC 58.471 45.455 0.00 0.00 0.00 2.52
1306 1376 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
1307 1377 3.528532 GAACGTTCGGGAGTTATTGGAT 58.471 45.455 13.36 0.00 0.00 3.41
1308 1378 2.671914 CGAACGTTCGGGAGTTATTGGA 60.672 50.000 36.53 0.00 46.30 3.53
1309 1379 1.657094 CGAACGTTCGGGAGTTATTGG 59.343 52.381 36.53 9.59 46.30 3.16
1321 1391 2.961522 TGCTCAAAATCCGAACGTTC 57.038 45.000 18.47 18.47 0.00 3.95
1322 1392 3.915437 AATGCTCAAAATCCGAACGTT 57.085 38.095 0.00 0.00 0.00 3.99
1323 1393 3.666902 CGAAATGCTCAAAATCCGAACGT 60.667 43.478 0.00 0.00 0.00 3.99
1324 1394 2.840176 CGAAATGCTCAAAATCCGAACG 59.160 45.455 0.00 0.00 0.00 3.95
1325 1395 3.821841 ACGAAATGCTCAAAATCCGAAC 58.178 40.909 0.00 0.00 0.00 3.95
1326 1396 3.119990 GGACGAAATGCTCAAAATCCGAA 60.120 43.478 0.00 0.00 0.00 4.30
1327 1397 2.418628 GGACGAAATGCTCAAAATCCGA 59.581 45.455 0.00 0.00 0.00 4.55
1328 1398 2.477863 GGGACGAAATGCTCAAAATCCG 60.478 50.000 0.00 0.00 0.00 4.18
1329 1399 3.150848 GGGACGAAATGCTCAAAATCC 57.849 47.619 0.00 0.00 0.00 3.01
1345 1415 2.666344 GCCATGTAAAAACGTTCGGGAC 60.666 50.000 0.00 0.00 0.00 4.46
1346 1416 1.536331 GCCATGTAAAAACGTTCGGGA 59.464 47.619 0.00 0.00 0.00 5.14
1347 1417 1.267261 TGCCATGTAAAAACGTTCGGG 59.733 47.619 0.00 0.00 0.00 5.14
1348 1418 2.690173 TGCCATGTAAAAACGTTCGG 57.310 45.000 0.00 0.00 0.00 4.30
1349 1419 3.623863 AGTTGCCATGTAAAAACGTTCG 58.376 40.909 0.00 0.00 0.00 3.95
1350 1420 5.959652 AAAGTTGCCATGTAAAAACGTTC 57.040 34.783 0.00 0.00 0.00 3.95
1351 1421 8.426881 AATTAAAGTTGCCATGTAAAAACGTT 57.573 26.923 0.00 0.00 0.00 3.99
1352 1422 7.707035 TGAATTAAAGTTGCCATGTAAAAACGT 59.293 29.630 0.00 0.00 0.00 3.99
1353 1423 8.066668 TGAATTAAAGTTGCCATGTAAAAACG 57.933 30.769 0.00 0.00 0.00 3.60
1356 1426 9.868277 CCTATGAATTAAAGTTGCCATGTAAAA 57.132 29.630 0.00 0.00 0.00 1.52
1357 1427 8.474025 CCCTATGAATTAAAGTTGCCATGTAAA 58.526 33.333 0.00 0.00 0.00 2.01
1358 1428 7.069331 CCCCTATGAATTAAAGTTGCCATGTAA 59.931 37.037 0.00 0.00 0.00 2.41
1359 1429 6.549364 CCCCTATGAATTAAAGTTGCCATGTA 59.451 38.462 0.00 0.00 0.00 2.29
1360 1430 5.363580 CCCCTATGAATTAAAGTTGCCATGT 59.636 40.000 0.00 0.00 0.00 3.21
1361 1431 5.598005 TCCCCTATGAATTAAAGTTGCCATG 59.402 40.000 0.00 0.00 0.00 3.66
1362 1432 5.776358 TCCCCTATGAATTAAAGTTGCCAT 58.224 37.500 0.00 0.00 0.00 4.40
1363 1433 5.199982 TCCCCTATGAATTAAAGTTGCCA 57.800 39.130 0.00 0.00 0.00 4.92
1364 1434 5.011023 CCATCCCCTATGAATTAAAGTTGCC 59.989 44.000 0.00 0.00 37.86 4.52
1365 1435 5.509670 GCCATCCCCTATGAATTAAAGTTGC 60.510 44.000 0.00 0.00 37.86 4.17
1366 1436 5.598005 TGCCATCCCCTATGAATTAAAGTTG 59.402 40.000 0.00 0.00 37.86 3.16
1367 1437 5.776358 TGCCATCCCCTATGAATTAAAGTT 58.224 37.500 0.00 0.00 37.86 2.66
1368 1438 5.402054 TGCCATCCCCTATGAATTAAAGT 57.598 39.130 0.00 0.00 37.86 2.66
1369 1439 5.835280 AGTTGCCATCCCCTATGAATTAAAG 59.165 40.000 0.00 0.00 37.86 1.85
1370 1440 5.776358 AGTTGCCATCCCCTATGAATTAAA 58.224 37.500 0.00 0.00 37.86 1.52
1371 1441 5.402054 AGTTGCCATCCCCTATGAATTAA 57.598 39.130 0.00 0.00 37.86 1.40
1372 1442 5.385198 GAAGTTGCCATCCCCTATGAATTA 58.615 41.667 0.00 0.00 37.86 1.40
1373 1443 3.979501 AGTTGCCATCCCCTATGAATT 57.020 42.857 0.00 0.00 37.86 2.17
1374 1444 3.748668 CGAAGTTGCCATCCCCTATGAAT 60.749 47.826 0.00 0.00 37.86 2.57
1375 1445 2.421388 CGAAGTTGCCATCCCCTATGAA 60.421 50.000 0.00 0.00 37.86 2.57
1376 1446 1.140852 CGAAGTTGCCATCCCCTATGA 59.859 52.381 0.00 0.00 37.86 2.15
1377 1447 1.134098 ACGAAGTTGCCATCCCCTATG 60.134 52.381 0.00 0.00 37.78 2.23
1378 1448 1.213296 ACGAAGTTGCCATCCCCTAT 58.787 50.000 0.00 0.00 37.78 2.57
1379 1449 2.691663 ACGAAGTTGCCATCCCCTA 58.308 52.632 0.00 0.00 37.78 3.53
1380 1450 3.495729 ACGAAGTTGCCATCCCCT 58.504 55.556 0.00 0.00 37.78 4.79
1411 1481 6.998968 AACATGGCAATTTTCTGACAAAAA 57.001 29.167 0.00 0.00 38.03 1.94
1412 1482 6.038050 GGAAACATGGCAATTTTCTGACAAAA 59.962 34.615 18.32 0.00 38.03 2.44
1413 1483 5.526846 GGAAACATGGCAATTTTCTGACAAA 59.473 36.000 18.32 0.00 38.03 2.83
1414 1484 5.055812 GGAAACATGGCAATTTTCTGACAA 58.944 37.500 18.32 0.00 38.03 3.18
1415 1485 4.344679 AGGAAACATGGCAATTTTCTGACA 59.655 37.500 18.32 0.00 39.14 3.58
1416 1486 4.886579 AGGAAACATGGCAATTTTCTGAC 58.113 39.130 18.32 7.20 31.21 3.51
1417 1487 5.549742 AAGGAAACATGGCAATTTTCTGA 57.450 34.783 18.32 0.00 31.21 3.27
1418 1488 7.820872 AGATTAAGGAAACATGGCAATTTTCTG 59.179 33.333 18.32 3.57 31.21 3.02
1419 1489 7.910584 AGATTAAGGAAACATGGCAATTTTCT 58.089 30.769 18.32 11.64 31.21 2.52
1420 1490 7.818930 TGAGATTAAGGAAACATGGCAATTTTC 59.181 33.333 13.20 13.20 0.00 2.29
1421 1491 7.603784 GTGAGATTAAGGAAACATGGCAATTTT 59.396 33.333 0.00 0.00 0.00 1.82
1422 1492 7.099120 GTGAGATTAAGGAAACATGGCAATTT 58.901 34.615 0.00 0.00 0.00 1.82
1423 1493 6.625740 CGTGAGATTAAGGAAACATGGCAATT 60.626 38.462 0.00 0.00 0.00 2.32
1424 1494 5.163622 CGTGAGATTAAGGAAACATGGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
1425 1495 4.155826 CGTGAGATTAAGGAAACATGGCAA 59.844 41.667 0.00 0.00 0.00 4.52
1426 1496 3.689161 CGTGAGATTAAGGAAACATGGCA 59.311 43.478 0.00 0.00 0.00 4.92
1427 1497 3.487544 GCGTGAGATTAAGGAAACATGGC 60.488 47.826 0.00 0.00 0.00 4.40
1428 1498 3.689161 TGCGTGAGATTAAGGAAACATGG 59.311 43.478 0.00 0.00 0.00 3.66
1429 1499 4.944962 TGCGTGAGATTAAGGAAACATG 57.055 40.909 0.00 0.00 0.00 3.21
1430 1500 5.473504 AGTTTGCGTGAGATTAAGGAAACAT 59.526 36.000 12.40 0.00 43.90 2.71
1431 1501 4.819630 AGTTTGCGTGAGATTAAGGAAACA 59.180 37.500 12.40 0.00 43.90 2.83
1432 1502 5.358298 AGTTTGCGTGAGATTAAGGAAAC 57.642 39.130 3.79 3.79 42.53 2.78
1433 1503 7.227910 AGTTTAGTTTGCGTGAGATTAAGGAAA 59.772 33.333 0.00 0.00 0.00 3.13
1434 1504 6.708949 AGTTTAGTTTGCGTGAGATTAAGGAA 59.291 34.615 0.00 0.00 0.00 3.36
1435 1505 6.228258 AGTTTAGTTTGCGTGAGATTAAGGA 58.772 36.000 0.00 0.00 0.00 3.36
1436 1506 6.481954 AGTTTAGTTTGCGTGAGATTAAGG 57.518 37.500 0.00 0.00 0.00 2.69
1437 1507 6.303259 GCAAGTTTAGTTTGCGTGAGATTAAG 59.697 38.462 0.00 0.00 41.16 1.85
1438 1508 6.140110 GCAAGTTTAGTTTGCGTGAGATTAA 58.860 36.000 0.00 0.00 41.16 1.40
1439 1509 5.685841 GCAAGTTTAGTTTGCGTGAGATTA 58.314 37.500 0.00 0.00 41.16 1.75
1440 1510 4.537015 GCAAGTTTAGTTTGCGTGAGATT 58.463 39.130 0.00 0.00 41.16 2.40
1441 1511 4.147219 GCAAGTTTAGTTTGCGTGAGAT 57.853 40.909 0.00 0.00 41.16 2.75
1442 1512 3.602390 GCAAGTTTAGTTTGCGTGAGA 57.398 42.857 0.00 0.00 41.16 3.27
1449 1519 6.156519 GGGTTTAGATGGCAAGTTTAGTTTG 58.843 40.000 0.00 0.00 0.00 2.93
1450 1520 5.048294 CGGGTTTAGATGGCAAGTTTAGTTT 60.048 40.000 0.00 0.00 0.00 2.66
1451 1521 4.457949 CGGGTTTAGATGGCAAGTTTAGTT 59.542 41.667 0.00 0.00 0.00 2.24
1452 1522 4.007659 CGGGTTTAGATGGCAAGTTTAGT 58.992 43.478 0.00 0.00 0.00 2.24
1453 1523 4.007659 ACGGGTTTAGATGGCAAGTTTAG 58.992 43.478 0.00 0.00 0.00 1.85
1454 1524 4.023726 ACGGGTTTAGATGGCAAGTTTA 57.976 40.909 0.00 0.00 0.00 2.01
1455 1525 2.871453 ACGGGTTTAGATGGCAAGTTT 58.129 42.857 0.00 0.00 0.00 2.66
1456 1526 2.579410 ACGGGTTTAGATGGCAAGTT 57.421 45.000 0.00 0.00 0.00 2.66
1457 1527 2.433436 GAACGGGTTTAGATGGCAAGT 58.567 47.619 0.00 0.00 0.00 3.16
1458 1528 1.396996 CGAACGGGTTTAGATGGCAAG 59.603 52.381 0.00 0.00 0.00 4.01
1459 1529 1.444836 CGAACGGGTTTAGATGGCAA 58.555 50.000 0.00 0.00 0.00 4.52
1460 1530 0.391927 CCGAACGGGTTTAGATGGCA 60.392 55.000 5.25 0.00 0.00 4.92
1461 1531 2.390427 CCGAACGGGTTTAGATGGC 58.610 57.895 5.25 0.00 0.00 4.40
1472 1542 1.234615 AAGCATGACAACCCGAACGG 61.235 55.000 6.25 6.25 37.81 4.44
1473 1543 1.434555 TAAGCATGACAACCCGAACG 58.565 50.000 0.00 0.00 0.00 3.95
1474 1544 2.812011 AGTTAAGCATGACAACCCGAAC 59.188 45.455 0.00 0.00 0.00 3.95
1475 1545 3.071479 GAGTTAAGCATGACAACCCGAA 58.929 45.455 0.00 0.00 0.00 4.30
1476 1546 2.614481 GGAGTTAAGCATGACAACCCGA 60.614 50.000 0.00 0.00 0.00 5.14
1477 1547 1.737793 GGAGTTAAGCATGACAACCCG 59.262 52.381 0.00 0.00 0.00 5.28
1478 1548 2.092323 GGGAGTTAAGCATGACAACCC 58.908 52.381 0.00 0.00 31.09 4.11
1479 1549 1.737793 CGGGAGTTAAGCATGACAACC 59.262 52.381 0.00 0.00 0.00 3.77
1480 1550 2.695359 TCGGGAGTTAAGCATGACAAC 58.305 47.619 0.00 0.00 0.00 3.32
1481 1551 3.071479 GTTCGGGAGTTAAGCATGACAA 58.929 45.455 0.00 0.00 0.00 3.18
1482 1552 2.695359 GTTCGGGAGTTAAGCATGACA 58.305 47.619 0.00 0.00 0.00 3.58
1483 1553 1.659098 CGTTCGGGAGTTAAGCATGAC 59.341 52.381 0.00 0.00 0.00 3.06
1484 1554 1.274167 ACGTTCGGGAGTTAAGCATGA 59.726 47.619 0.00 0.00 0.00 3.07
1485 1555 1.722011 ACGTTCGGGAGTTAAGCATG 58.278 50.000 0.00 0.00 0.00 4.06
1486 1556 2.344025 GAACGTTCGGGAGTTAAGCAT 58.656 47.619 13.36 0.00 0.00 3.79
1487 1557 1.787012 GAACGTTCGGGAGTTAAGCA 58.213 50.000 13.36 0.00 0.00 3.91
1488 1558 0.712222 CGAACGTTCGGGAGTTAAGC 59.288 55.000 36.53 4.05 46.30 3.09
1499 1569 5.173854 CGGTAATTATAACTCCCGAACGTTC 59.826 44.000 18.47 18.47 37.66 3.95
1500 1570 5.043248 CGGTAATTATAACTCCCGAACGTT 58.957 41.667 0.00 0.00 37.66 3.99
1501 1571 4.097892 ACGGTAATTATAACTCCCGAACGT 59.902 41.667 19.58 6.49 38.75 3.99
1502 1572 4.610945 ACGGTAATTATAACTCCCGAACG 58.389 43.478 19.58 5.99 38.75 3.95
1503 1573 7.203218 ACTAACGGTAATTATAACTCCCGAAC 58.797 38.462 19.58 0.00 38.75 3.95
1504 1574 7.346751 ACTAACGGTAATTATAACTCCCGAA 57.653 36.000 19.58 9.95 38.75 4.30
1505 1575 6.959639 ACTAACGGTAATTATAACTCCCGA 57.040 37.500 19.58 3.79 38.75 5.14
1506 1576 9.696917 ATAAACTAACGGTAATTATAACTCCCG 57.303 33.333 13.88 13.88 41.09 5.14
1514 1584 9.551734 GGAGACCAATAAACTAACGGTAATTAT 57.448 33.333 0.00 0.00 0.00 1.28
1515 1585 8.538701 TGGAGACCAATAAACTAACGGTAATTA 58.461 33.333 0.00 0.00 0.00 1.40
1516 1586 7.396418 TGGAGACCAATAAACTAACGGTAATT 58.604 34.615 0.00 0.00 0.00 1.40
1517 1587 6.949715 TGGAGACCAATAAACTAACGGTAAT 58.050 36.000 0.00 0.00 0.00 1.89
1518 1588 6.357579 TGGAGACCAATAAACTAACGGTAA 57.642 37.500 0.00 0.00 0.00 2.85
1519 1589 5.999205 TGGAGACCAATAAACTAACGGTA 57.001 39.130 0.00 0.00 0.00 4.02
1520 1590 4.895668 TGGAGACCAATAAACTAACGGT 57.104 40.909 0.00 0.00 0.00 4.83
1541 1611 5.577945 CGCATTTACTGAGGCAATTCAAATT 59.422 36.000 0.00 0.00 0.00 1.82
1557 1627 7.104264 CGCACAATTATCTTTTTCGCATTTAC 58.896 34.615 0.00 0.00 0.00 2.01
1778 1893 5.290386 ACAGAAGACCGCTATTAGTAATGC 58.710 41.667 5.61 6.47 0.00 3.56
1919 2034 9.693739 TTGATGTGGACCATAAATATAACTTGT 57.306 29.630 0.00 0.00 32.56 3.16
1976 2091 2.282745 GAGCTTTGGGCACTGGCT 60.283 61.111 2.14 0.92 44.79 4.75
2102 2217 4.087907 TGAATCCATCTGATTTGTTGGCA 58.912 39.130 0.00 0.00 43.81 4.92
2726 2841 1.003545 CACTGAGCTTTGTTGACACCG 60.004 52.381 0.00 0.00 0.00 4.94
3038 3153 2.386661 TTTCCTCGATGCTGAACTCC 57.613 50.000 0.00 0.00 0.00 3.85
3496 3697 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3497 3698 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3498 3699 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3499 3700 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3500 3701 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3540 3741 9.666626 GCATCTACATACATCCGTATATAGTTC 57.333 37.037 0.00 0.00 36.74 3.01
3541 3742 9.185680 TGCATCTACATACATCCGTATATAGTT 57.814 33.333 0.00 0.00 36.74 2.24
3542 3743 8.747538 TGCATCTACATACATCCGTATATAGT 57.252 34.615 0.00 0.00 36.74 2.12
3545 3746 9.890629 AAAATGCATCTACATACATCCGTATAT 57.109 29.630 0.00 0.00 36.11 0.86
3547 3748 9.719355 TTAAAATGCATCTACATACATCCGTAT 57.281 29.630 0.00 0.00 38.96 3.06
3548 3749 9.203421 CTTAAAATGCATCTACATACATCCGTA 57.797 33.333 0.00 0.00 0.00 4.02
3549 3750 7.715249 ACTTAAAATGCATCTACATACATCCGT 59.285 33.333 0.00 0.00 0.00 4.69
3550 3751 8.011673 CACTTAAAATGCATCTACATACATCCG 58.988 37.037 0.00 0.00 0.00 4.18
3551 3752 8.840321 ACACTTAAAATGCATCTACATACATCC 58.160 33.333 0.00 0.00 0.00 3.51
3552 3753 9.655769 CACACTTAAAATGCATCTACATACATC 57.344 33.333 0.00 0.00 0.00 3.06
3553 3754 8.623903 CCACACTTAAAATGCATCTACATACAT 58.376 33.333 0.00 0.00 0.00 2.29
3554 3755 7.826744 TCCACACTTAAAATGCATCTACATACA 59.173 33.333 0.00 0.00 0.00 2.29
3555 3756 8.208718 TCCACACTTAAAATGCATCTACATAC 57.791 34.615 0.00 0.00 0.00 2.39
3556 3757 8.978874 ATCCACACTTAAAATGCATCTACATA 57.021 30.769 0.00 0.00 0.00 2.29
3557 3758 7.886629 ATCCACACTTAAAATGCATCTACAT 57.113 32.000 0.00 0.00 0.00 2.29
3558 3759 7.392953 TGAATCCACACTTAAAATGCATCTACA 59.607 33.333 0.00 0.00 0.00 2.74
3559 3760 7.761409 TGAATCCACACTTAAAATGCATCTAC 58.239 34.615 0.00 0.00 0.00 2.59
3560 3761 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
3561 3762 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
3562 3763 8.483307 AAATGAATCCACACTTAAAATGCATC 57.517 30.769 0.00 0.00 0.00 3.91
3564 3765 9.941325 AATAAATGAATCCACACTTAAAATGCA 57.059 25.926 0.00 0.00 0.00 3.96
3569 3770 9.995003 AGCAAAATAAATGAATCCACACTTAAA 57.005 25.926 0.00 0.00 0.00 1.52
3570 3771 9.638239 GAGCAAAATAAATGAATCCACACTTAA 57.362 29.630 0.00 0.00 0.00 1.85
3571 3772 8.250332 GGAGCAAAATAAATGAATCCACACTTA 58.750 33.333 0.00 0.00 0.00 2.24
3572 3773 7.099120 GGAGCAAAATAAATGAATCCACACTT 58.901 34.615 0.00 0.00 0.00 3.16
3573 3774 6.625740 CGGAGCAAAATAAATGAATCCACACT 60.626 38.462 0.00 0.00 0.00 3.55
3574 3775 5.516339 CGGAGCAAAATAAATGAATCCACAC 59.484 40.000 0.00 0.00 0.00 3.82
3575 3776 5.184864 ACGGAGCAAAATAAATGAATCCACA 59.815 36.000 0.00 0.00 0.00 4.17
3576 3777 5.650543 ACGGAGCAAAATAAATGAATCCAC 58.349 37.500 0.00 0.00 0.00 4.02
3577 3778 5.913137 ACGGAGCAAAATAAATGAATCCA 57.087 34.783 0.00 0.00 0.00 3.41
3578 3779 7.425606 ACATACGGAGCAAAATAAATGAATCC 58.574 34.615 0.00 0.00 0.00 3.01
3579 3780 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
3580 3781 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
3581 3782 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
3582 3783 7.225931 GGACTACATACGGAGCAAAATAAATGA 59.774 37.037 0.00 0.00 0.00 2.57
3583 3784 7.011950 TGGACTACATACGGAGCAAAATAAATG 59.988 37.037 0.00 0.00 0.00 2.32
3584 3785 7.051623 TGGACTACATACGGAGCAAAATAAAT 58.948 34.615 0.00 0.00 0.00 1.40
3585 3786 6.408035 TGGACTACATACGGAGCAAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
3586 3787 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
3587 3788 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
3588 3789 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3589 3790 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3590 3791 3.704566 AGATGGACTACATACGGAGCAAA 59.295 43.478 0.00 0.00 40.72 3.68
3591 3792 3.296854 AGATGGACTACATACGGAGCAA 58.703 45.455 0.00 0.00 40.72 3.91
3592 3793 2.945456 AGATGGACTACATACGGAGCA 58.055 47.619 0.00 0.00 40.72 4.26
3593 3794 5.403246 CATTAGATGGACTACATACGGAGC 58.597 45.833 0.00 0.00 40.72 4.70
3625 3826 7.985752 CCTCCGTTCCTAAATGTAAGTCTTTAT 59.014 37.037 0.00 0.00 0.00 1.40
3626 3827 7.325694 CCTCCGTTCCTAAATGTAAGTCTTTA 58.674 38.462 0.00 0.00 0.00 1.85
3627 3828 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3628 3829 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3629 3830 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3630 3831 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3631 3832 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3632 3833 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3633 3834 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3634 3835 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3635 3836 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3636 3837 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3637 3838 7.954620 AGTTATATACTCCCTCCGTTCCTAAAT 59.045 37.037 0.00 0.00 28.23 1.40
3638 3839 7.300658 AGTTATATACTCCCTCCGTTCCTAAA 58.699 38.462 0.00 0.00 28.23 1.85
3639 3840 6.856757 AGTTATATACTCCCTCCGTTCCTAA 58.143 40.000 0.00 0.00 28.23 2.69
3640 3841 6.460103 AGTTATATACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 28.23 2.94
3641 3842 5.336491 AGTTATATACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 28.23 3.36
3642 3843 6.244654 AGTAGTTATATACTCCCTCCGTTCC 58.755 44.000 0.00 0.00 38.33 3.62
3643 3844 7.360776 CGAAGTAGTTATATACTCCCTCCGTTC 60.361 44.444 0.00 0.00 38.33 3.95
3644 3845 6.429385 CGAAGTAGTTATATACTCCCTCCGTT 59.571 42.308 0.00 0.00 38.33 4.44
3645 3846 5.936956 CGAAGTAGTTATATACTCCCTCCGT 59.063 44.000 0.00 0.00 38.33 4.69
3646 3847 5.936956 ACGAAGTAGTTATATACTCCCTCCG 59.063 44.000 0.00 0.00 41.94 4.63
3684 3885 3.737172 ATCAACCGCCGTGCAAGC 61.737 61.111 0.00 0.00 0.00 4.01
3695 3896 0.745845 ATGCTGCGAGTCCATCAACC 60.746 55.000 0.00 0.00 0.00 3.77
3750 3951 1.074951 GCCACCTAAGCCACCAACT 59.925 57.895 0.00 0.00 0.00 3.16
3766 3967 2.838813 AGGGAAGTCACCTAAACTAGCC 59.161 50.000 0.00 0.00 36.32 3.93
3799 4031 3.938963 AGTATCGAACAACCGCATTTGAT 59.061 39.130 0.00 0.00 34.12 2.57
3948 4182 2.812358 AGTGTGCGTCAGTTGACATA 57.188 45.000 12.33 0.00 44.99 2.29
3951 4185 1.396996 ACAAAGTGTGCGTCAGTTGAC 59.603 47.619 2.16 2.16 39.36 3.18
3953 4187 2.350192 TGTACAAAGTGTGCGTCAGTTG 59.650 45.455 0.00 3.98 39.36 3.16
3981 4215 6.390277 AGATATATGGGGATGGAGGGAATA 57.610 41.667 0.00 0.00 0.00 1.75
3982 4216 5.260862 AGATATATGGGGATGGAGGGAAT 57.739 43.478 0.00 0.00 0.00 3.01
3983 4217 4.735309 AGATATATGGGGATGGAGGGAA 57.265 45.455 0.00 0.00 0.00 3.97
3984 4218 5.018413 TGTTAGATATATGGGGATGGAGGGA 59.982 44.000 0.00 0.00 0.00 4.20
3985 4219 5.288687 TGTTAGATATATGGGGATGGAGGG 58.711 45.833 0.00 0.00 0.00 4.30
3986 4220 6.891306 TTGTTAGATATATGGGGATGGAGG 57.109 41.667 0.00 0.00 0.00 4.30
3987 4221 8.776119 AGATTTGTTAGATATATGGGGATGGAG 58.224 37.037 0.00 0.00 0.00 3.86
3988 4222 8.700145 AGATTTGTTAGATATATGGGGATGGA 57.300 34.615 0.00 0.00 0.00 3.41
3992 4226 9.268282 GTCCTAGATTTGTTAGATATATGGGGA 57.732 37.037 0.00 0.00 0.00 4.81
3993 4227 9.046846 TGTCCTAGATTTGTTAGATATATGGGG 57.953 37.037 0.00 0.00 0.00 4.96
4003 4237 9.846248 CCAAAATTCTTGTCCTAGATTTGTTAG 57.154 33.333 0.00 0.00 28.79 2.34
4004 4238 8.802267 CCCAAAATTCTTGTCCTAGATTTGTTA 58.198 33.333 0.00 0.00 28.79 2.41
4005 4239 7.508977 TCCCAAAATTCTTGTCCTAGATTTGTT 59.491 33.333 0.00 0.00 28.79 2.83
4006 4240 7.010160 TCCCAAAATTCTTGTCCTAGATTTGT 58.990 34.615 0.00 0.00 28.79 2.83
4007 4241 7.039784 TGTCCCAAAATTCTTGTCCTAGATTTG 60.040 37.037 0.00 0.00 29.84 2.32
4008 4242 7.010160 TGTCCCAAAATTCTTGTCCTAGATTT 58.990 34.615 0.00 0.00 0.00 2.17
4009 4243 6.552008 TGTCCCAAAATTCTTGTCCTAGATT 58.448 36.000 0.00 0.00 0.00 2.40
4010 4244 6.139679 TGTCCCAAAATTCTTGTCCTAGAT 57.860 37.500 0.00 0.00 0.00 1.98
4011 4245 5.514834 CCTGTCCCAAAATTCTTGTCCTAGA 60.515 44.000 0.00 0.00 0.00 2.43
4012 4246 4.702131 CCTGTCCCAAAATTCTTGTCCTAG 59.298 45.833 0.00 0.00 0.00 3.02
4013 4247 4.352595 TCCTGTCCCAAAATTCTTGTCCTA 59.647 41.667 0.00 0.00 0.00 2.94
4014 4248 3.140144 TCCTGTCCCAAAATTCTTGTCCT 59.860 43.478 0.00 0.00 0.00 3.85
4015 4249 3.496331 TCCTGTCCCAAAATTCTTGTCC 58.504 45.455 0.00 0.00 0.00 4.02
4016 4250 4.145052 ACTCCTGTCCCAAAATTCTTGTC 58.855 43.478 0.00 0.00 0.00 3.18
4017 4251 4.184649 ACTCCTGTCCCAAAATTCTTGT 57.815 40.909 0.00 0.00 0.00 3.16
4018 4252 5.316987 AGTACTCCTGTCCCAAAATTCTTG 58.683 41.667 0.00 0.00 0.00 3.02
4019 4253 5.584551 AGTACTCCTGTCCCAAAATTCTT 57.415 39.130 0.00 0.00 0.00 2.52
4020 4254 6.272558 ACTTAGTACTCCTGTCCCAAAATTCT 59.727 38.462 0.00 0.00 0.00 2.40
4021 4255 6.371825 CACTTAGTACTCCTGTCCCAAAATTC 59.628 42.308 0.00 0.00 0.00 2.17
4022 4256 6.183361 ACACTTAGTACTCCTGTCCCAAAATT 60.183 38.462 0.00 0.00 0.00 1.82
4023 4257 5.309806 ACACTTAGTACTCCTGTCCCAAAAT 59.690 40.000 0.00 0.00 0.00 1.82
4024 4258 4.657039 ACACTTAGTACTCCTGTCCCAAAA 59.343 41.667 0.00 0.00 0.00 2.44
4025 4259 4.228824 ACACTTAGTACTCCTGTCCCAAA 58.771 43.478 0.00 0.00 0.00 3.28
4026 4260 3.853207 ACACTTAGTACTCCTGTCCCAA 58.147 45.455 0.00 0.00 0.00 4.12
4027 4261 3.537795 ACACTTAGTACTCCTGTCCCA 57.462 47.619 0.00 0.00 0.00 4.37
4059 4293 1.066143 AGTTACTCTTGCCGACCCATG 60.066 52.381 0.00 0.00 0.00 3.66
4174 4409 6.994221 AGTACTCCCTCCGTTCATAAATATG 58.006 40.000 0.00 0.00 35.04 1.78
4252 4491 0.339859 TACATCCCTGGGAGAGCTGT 59.660 55.000 21.99 21.02 34.05 4.40
4282 4572 2.022764 TGGTTGACTGCATCATACGG 57.977 50.000 0.00 0.00 37.11 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.