Multiple sequence alignment - TraesCS6B01G243300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G243300 chr6B 100.000 4868 0 0 1 4868 432495573 432490706 0.000000e+00 8990.0
1 TraesCS6B01G243300 chr6B 86.471 340 45 1 245 583 60081390 60081051 5.950000e-99 372.0
2 TraesCS6B01G243300 chr7B 97.066 1704 37 5 919 2611 438002491 438004192 0.000000e+00 2857.0
3 TraesCS6B01G243300 chr7B 96.772 1704 41 6 919 2611 437998543 437996843 0.000000e+00 2830.0
4 TraesCS6B01G243300 chr7B 98.180 1264 21 1 2804 4065 438013649 438012386 0.000000e+00 2206.0
5 TraesCS6B01G243300 chr7B 98.505 1204 17 1 2862 4065 437927096 437928298 0.000000e+00 2122.0
6 TraesCS6B01G243300 chr7B 94.884 1251 48 8 919 2155 438015640 438014392 0.000000e+00 1941.0
7 TraesCS6B01G243300 chr7B 93.696 460 19 7 2153 2611 438014086 438013636 0.000000e+00 680.0
8 TraesCS6B01G243300 chr7B 95.399 326 12 1 598 920 680705330 680705005 2.600000e-142 516.0
9 TraesCS6B01G243300 chr7B 96.552 232 6 1 4639 4868 438009410 438009179 2.750000e-102 383.0
10 TraesCS6B01G243300 chr7B 94.348 230 13 0 4215 4444 437928289 437928518 2.160000e-93 353.0
11 TraesCS6B01G243300 chr7B 99.425 174 1 0 2604 2777 611525484 611525311 2.830000e-82 316.0
12 TraesCS6B01G243300 chr7B 95.455 198 7 2 4429 4625 437928533 437928729 1.020000e-81 315.0
13 TraesCS6B01G243300 chr7B 90.254 236 9 1 4215 4450 438012395 438012174 3.680000e-76 296.0
14 TraesCS6B01G243300 chr7B 94.495 109 1 4 4525 4632 438012174 438012070 3.900000e-36 163.0
15 TraesCS6B01G243300 chr7B 83.117 154 24 2 149 301 622790084 622790236 6.570000e-29 139.0
16 TraesCS6B01G243300 chr7B 100.000 63 0 0 2804 2866 438004179 438004241 3.080000e-22 117.0
17 TraesCS6B01G243300 chr7B 100.000 30 0 0 2776 2805 437996863 437996834 6.810000e-04 56.5
18 TraesCS6B01G243300 chr7B 100.000 30 0 0 2776 2805 438004172 438004201 6.810000e-04 56.5
19 TraesCS6B01G243300 chr6A 94.558 1709 54 18 919 2611 384681257 384682942 0.000000e+00 2604.0
20 TraesCS6B01G243300 chr6A 97.623 1262 30 0 2804 4065 384682929 384684190 0.000000e+00 2165.0
21 TraesCS6B01G243300 chr6A 93.356 587 28 8 1 583 282152032 282151453 0.000000e+00 857.0
22 TraesCS6B01G243300 chr6A 92.737 358 9 9 4528 4868 384684774 384685131 7.270000e-138 501.0
23 TraesCS6B01G243300 chr6D 93.486 1351 53 19 919 2253 271309089 271307758 0.000000e+00 1975.0
24 TraesCS6B01G243300 chr6D 94.475 1267 63 5 2804 4065 271307443 271306179 0.000000e+00 1945.0
25 TraesCS6B01G243300 chr6D 95.197 583 27 1 2 583 466379703 466380285 0.000000e+00 920.0
26 TraesCS6B01G243300 chr6D 96.942 327 10 0 2285 2611 271307756 271307430 2.560000e-152 549.0
27 TraesCS6B01G243300 chr6D 88.503 461 25 15 4428 4868 271304857 271304405 2.580000e-147 532.0
28 TraesCS6B01G243300 chr6D 95.758 330 9 3 598 923 466382841 466383169 1.200000e-145 527.0
29 TraesCS6B01G243300 chr6D 88.421 95 7 3 2504 2598 108505697 108505607 1.430000e-20 111.0
30 TraesCS6B01G243300 chr6D 100.000 28 0 0 2778 2805 271307448 271307421 9.000000e-03 52.8
31 TraesCS6B01G243300 chr1A 95.719 584 24 1 1 583 489318445 489317862 0.000000e+00 939.0
32 TraesCS6B01G243300 chr1A 96.319 326 11 1 598 922 489293447 489293122 7.170000e-148 534.0
33 TraesCS6B01G243300 chr1A 98.013 151 3 0 4065 4215 293742788 293742638 3.740000e-66 263.0
34 TraesCS6B01G243300 chr1A 95.364 151 7 0 4065 4215 494436437 494436287 1.750000e-59 241.0
35 TraesCS6B01G243300 chr3D 94.649 598 29 3 1 596 209669314 209669910 0.000000e+00 924.0
36 TraesCS6B01G243300 chr3D 99.425 174 1 0 2609 2782 422475688 422475515 2.830000e-82 316.0
37 TraesCS6B01G243300 chr3D 97.191 178 2 3 2611 2786 154616514 154616338 1.020000e-76 298.0
38 TraesCS6B01G243300 chr4A 94.539 586 27 5 1 583 553453700 553453117 0.000000e+00 900.0
39 TraesCS6B01G243300 chr4A 94.801 327 13 2 600 922 616712411 616712737 1.560000e-139 507.0
40 TraesCS6B01G243300 chr4A 94.277 332 14 3 597 923 553452799 553452468 2.020000e-138 503.0
41 TraesCS6B01G243300 chr2B 94.349 584 29 2 1 583 667802953 667803533 0.000000e+00 893.0
42 TraesCS6B01G243300 chr2B 83.094 905 147 6 2966 3867 517377348 517376447 0.000000e+00 819.0
43 TraesCS6B01G243300 chr2B 98.065 310 3 1 598 904 64025833 64025524 1.990000e-148 536.0
44 TraesCS6B01G243300 chr2B 94.562 331 14 2 598 924 667814635 667814965 4.350000e-140 508.0
45 TraesCS6B01G243300 chr2D 81.140 912 137 19 2966 3867 439435863 439434977 0.000000e+00 699.0
46 TraesCS6B01G243300 chr2D 85.882 340 47 1 245 583 610422630 610422291 1.290000e-95 361.0
47 TraesCS6B01G243300 chr5B 95.122 328 13 1 598 922 592923470 592923143 9.340000e-142 514.0
48 TraesCS6B01G243300 chr5B 96.622 148 5 0 4066 4213 628609481 628609628 3.760000e-61 246.0
49 TraesCS6B01G243300 chr5B 96.599 147 5 0 4066 4212 625038411 625038557 1.350000e-60 244.0
50 TraesCS6B01G243300 chr1D 94.495 327 14 2 600 922 22596725 22596399 7.270000e-138 501.0
51 TraesCS6B01G243300 chr2A 87.538 329 41 0 2966 3294 549684907 549685235 9.890000e-102 381.0
52 TraesCS6B01G243300 chr3B 86.471 340 45 1 245 583 71114563 71114224 5.950000e-99 372.0
53 TraesCS6B01G243300 chr3B 100.000 173 0 0 2607 2779 354011432 354011260 2.190000e-83 320.0
54 TraesCS6B01G243300 chr3B 99.425 174 1 0 2605 2778 648068707 648068880 2.830000e-82 316.0
55 TraesCS6B01G243300 chr3B 100.000 46 0 0 4163 4208 238492007 238492052 8.680000e-13 86.1
56 TraesCS6B01G243300 chr5A 98.883 179 1 1 2606 2784 680850642 680850819 7.860000e-83 318.0
57 TraesCS6B01G243300 chr7A 99.429 175 0 1 2606 2779 85196039 85195865 2.830000e-82 316.0
58 TraesCS6B01G243300 chr7A 100.000 168 0 0 2610 2777 426576591 426576424 1.320000e-80 311.0
59 TraesCS6B01G243300 chr7A 95.395 152 7 0 4064 4215 21105462 21105613 4.870000e-60 243.0
60 TraesCS6B01G243300 chr7A 93.333 150 10 0 4066 4215 602095324 602095175 6.340000e-54 222.0
61 TraesCS6B01G243300 chr4B 100.000 171 0 0 2608 2778 553510688 553510518 2.830000e-82 316.0
62 TraesCS6B01G243300 chr3A 95.266 169 6 2 4062 4229 688116992 688116825 2.890000e-67 267.0
63 TraesCS6B01G243300 chr3A 88.000 100 8 3 2499 2598 171783987 171784082 1.110000e-21 115.0
64 TraesCS6B01G243300 chrUn 97.959 147 3 0 4069 4215 117156149 117156295 6.250000e-64 255.0
65 TraesCS6B01G243300 chrUn 87.129 101 9 3 2498 2598 45085046 45085142 1.430000e-20 111.0
66 TraesCS6B01G243300 chrUn 88.421 95 7 3 2504 2598 182460799 182460709 1.430000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G243300 chr6B 432490706 432495573 4867 True 8990.000000 8990 100.000000 1 4868 1 chr6B.!!$R2 4867
1 TraesCS6B01G243300 chr7B 437996834 437998543 1709 True 1443.250000 2830 98.386000 919 2805 2 chr7B.!!$R3 1886
2 TraesCS6B01G243300 chr7B 438002491 438004241 1750 False 1010.166667 2857 99.022000 919 2866 3 chr7B.!!$F3 1947
3 TraesCS6B01G243300 chr7B 438009179 438015640 6461 True 944.833333 2206 94.676833 919 4868 6 chr7B.!!$R4 3949
4 TraesCS6B01G243300 chr7B 437927096 437928729 1633 False 930.000000 2122 96.102667 2862 4625 3 chr7B.!!$F2 1763
5 TraesCS6B01G243300 chr6A 384681257 384685131 3874 False 1756.666667 2604 94.972667 919 4868 3 chr6A.!!$F1 3949
6 TraesCS6B01G243300 chr6A 282151453 282152032 579 True 857.000000 857 93.356000 1 583 1 chr6A.!!$R1 582
7 TraesCS6B01G243300 chr6D 271304405 271309089 4684 True 1010.760000 1975 94.681200 919 4868 5 chr6D.!!$R2 3949
8 TraesCS6B01G243300 chr6D 466379703 466383169 3466 False 723.500000 920 95.477500 2 923 2 chr6D.!!$F1 921
9 TraesCS6B01G243300 chr1A 489317862 489318445 583 True 939.000000 939 95.719000 1 583 1 chr1A.!!$R3 582
10 TraesCS6B01G243300 chr3D 209669314 209669910 596 False 924.000000 924 94.649000 1 596 1 chr3D.!!$F1 595
11 TraesCS6B01G243300 chr4A 553452468 553453700 1232 True 701.500000 900 94.408000 1 923 2 chr4A.!!$R1 922
12 TraesCS6B01G243300 chr2B 667802953 667803533 580 False 893.000000 893 94.349000 1 583 1 chr2B.!!$F1 582
13 TraesCS6B01G243300 chr2B 517376447 517377348 901 True 819.000000 819 83.094000 2966 3867 1 chr2B.!!$R2 901
14 TraesCS6B01G243300 chr2D 439434977 439435863 886 True 699.000000 699 81.140000 2966 3867 1 chr2D.!!$R1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 370 0.249398 GGTCGGCACTTGTCTATGGT 59.751 55.0 0.00 0.0 0.0 3.55 F
586 588 0.321564 TCCTGTCATGGCGAGGTTTG 60.322 55.0 13.31 0.0 0.0 2.93 F
588 590 0.606401 CTGTCATGGCGAGGTTTGGT 60.606 55.0 0.00 0.0 0.0 3.67 F
2593 4509 0.615331 TGGGCCTGCTCTAGTTTCTG 59.385 55.0 4.53 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 3471 1.115326 GGCCAACAAGCAGAAAGGGT 61.115 55.000 0.0 0.0 0.00 4.34 R
2518 4433 3.248029 GCAGGAAGCACACAGTCG 58.752 61.111 0.0 0.0 44.79 4.18 R
2597 4513 7.183112 TGGGTCTGTCCTTTATGGTTATCTTAA 59.817 37.037 0.0 0.0 37.07 1.85 R
4081 6031 0.036388 AATCGTCCAAGGCATGTCGT 60.036 50.000 0.0 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 5.131809 ACAAAATTTCCCCCTGTTTTCATGA 59.868 36.000 0.00 0.00 0.00 3.07
213 215 4.300803 TCATTGTGAGTGCAGCAAATTTC 58.699 39.130 0.00 0.00 0.00 2.17
306 308 3.128242 CCTACTTGACGATTGTAGACGGT 59.872 47.826 0.00 0.00 36.66 4.83
339 341 0.608130 GAAGGGGCAAAACATGGGAC 59.392 55.000 0.00 0.00 0.00 4.46
355 357 1.810030 GACTTCATGGTCGGTCGGC 60.810 63.158 0.00 0.00 0.00 5.54
364 366 1.582968 GTCGGTCGGCACTTGTCTA 59.417 57.895 0.00 0.00 0.00 2.59
368 370 0.249398 GGTCGGCACTTGTCTATGGT 59.751 55.000 0.00 0.00 0.00 3.55
370 372 0.973632 TCGGCACTTGTCTATGGTGT 59.026 50.000 0.00 0.00 33.96 4.16
394 396 1.068121 AAAGGAGGTTGTGGAGGAGG 58.932 55.000 0.00 0.00 0.00 4.30
467 469 6.600822 GGATATAACACCATCCCATTGATCTG 59.399 42.308 0.00 0.00 35.61 2.90
579 581 0.957395 AACAAGCTCCTGTCATGGCG 60.957 55.000 0.00 0.00 0.00 5.69
580 582 1.078918 CAAGCTCCTGTCATGGCGA 60.079 57.895 0.00 0.00 0.00 5.54
581 583 1.088340 CAAGCTCCTGTCATGGCGAG 61.088 60.000 0.00 0.00 0.00 5.03
583 585 3.023949 GCTCCTGTCATGGCGAGGT 62.024 63.158 13.31 0.00 0.00 3.85
584 586 1.599047 CTCCTGTCATGGCGAGGTT 59.401 57.895 13.31 0.00 0.00 3.50
586 588 0.321564 TCCTGTCATGGCGAGGTTTG 60.322 55.000 13.31 0.00 0.00 2.93
587 589 1.308069 CCTGTCATGGCGAGGTTTGG 61.308 60.000 7.42 0.00 0.00 3.28
588 590 0.606401 CTGTCATGGCGAGGTTTGGT 60.606 55.000 0.00 0.00 0.00 3.67
590 592 0.889186 GTCATGGCGAGGTTTGGTGT 60.889 55.000 0.00 0.00 0.00 4.16
591 593 0.888736 TCATGGCGAGGTTTGGTGTG 60.889 55.000 0.00 0.00 0.00 3.82
592 594 0.888736 CATGGCGAGGTTTGGTGTGA 60.889 55.000 0.00 0.00 0.00 3.58
593 595 0.889186 ATGGCGAGGTTTGGTGTGAC 60.889 55.000 0.00 0.00 0.00 3.67
608 915 3.742369 GGTGTGACCATTGCTGAAATTTG 59.258 43.478 0.00 0.00 38.42 2.32
617 924 5.854338 CCATTGCTGAAATTTGTCAAAATGC 59.146 36.000 1.31 3.79 36.11 3.56
656 966 6.839124 ATCTTGTTGGATGATGCAAAGTAA 57.161 33.333 0.00 0.00 26.96 2.24
663 973 9.625747 TGTTGGATGATGCAAAGTAAGATTATA 57.374 29.630 0.00 0.00 26.96 0.98
696 1007 5.119588 GTGATGTTTTCATGTCAATTGGCTG 59.880 40.000 12.01 7.31 41.05 4.85
711 1022 0.668401 GGCTGCTGAAATGTTGCACC 60.668 55.000 0.00 0.00 32.91 5.01
716 1027 2.094597 TGCTGAAATGTTGCACCATAGC 60.095 45.455 9.79 9.79 0.00 2.97
721 1032 1.386533 ATGTTGCACCATAGCTGCTC 58.613 50.000 4.91 0.00 35.53 4.26
746 1057 8.602328 TCTTTTTGTTGTTGAAATGTATGCTTG 58.398 29.630 0.00 0.00 0.00 4.01
749 1060 3.591196 TGTTGAAATGTATGCTTGGGC 57.409 42.857 0.00 0.00 39.26 5.36
750 1061 3.164268 TGTTGAAATGTATGCTTGGGCT 58.836 40.909 0.00 0.00 39.59 5.19
751 1062 3.056678 TGTTGAAATGTATGCTTGGGCTG 60.057 43.478 0.00 0.00 39.59 4.85
810 1122 5.182001 GGTGTTAGTCTCCGTTAGTCACTAA 59.818 44.000 0.00 0.00 0.00 2.24
835 1147 6.539173 TGGTATTTTGGCTAGAGAAAACTGA 58.461 36.000 0.00 0.00 0.00 3.41
905 1217 1.659098 GTTCGGTTTCTCATAGTGGCG 59.341 52.381 0.00 0.00 0.00 5.69
1064 1376 2.287427 ACGCCCGTAAGTCTCGATTATG 60.287 50.000 0.00 0.00 0.00 1.90
1314 1678 5.418524 CGATCCTGGTAATCAGATCATCTCT 59.581 44.000 0.00 0.00 46.18 3.10
1432 2246 8.998277 ATATACTTGAGCTCAGTTTAGGTAGA 57.002 34.615 17.43 11.30 0.00 2.59
1496 2310 6.267496 ACATATTCAAGGTTGTTGCTTACC 57.733 37.500 0.00 0.00 34.54 2.85
1513 2327 4.342092 GCTTACCTGATTTTGTATGGCCAT 59.658 41.667 24.45 24.45 0.00 4.40
1814 2659 4.695928 AGTTCTGGCTTTCGGTTCTAAATC 59.304 41.667 0.00 0.00 0.00 2.17
1974 3471 4.743057 ATCAGTGCATCTGCTAACACTA 57.257 40.909 10.36 0.00 41.28 2.74
2158 3761 5.491323 TTGTTCCTTCCTGTTTTGGTTTT 57.509 34.783 0.00 0.00 0.00 2.43
2196 4105 4.380843 TTTATCCCCTTTGACTCTTGCA 57.619 40.909 0.00 0.00 0.00 4.08
2297 4212 4.496336 GCCATCCCTGCTTCGGCT 62.496 66.667 0.00 0.00 42.37 5.52
2518 4433 2.543238 CCGTCGTCCAGTATTCTTAGCC 60.543 54.545 0.00 0.00 0.00 3.93
2592 4508 1.280421 CTTGGGCCTGCTCTAGTTTCT 59.720 52.381 4.53 0.00 0.00 2.52
2593 4509 0.615331 TGGGCCTGCTCTAGTTTCTG 59.385 55.000 4.53 0.00 0.00 3.02
2594 4510 0.615850 GGGCCTGCTCTAGTTTCTGT 59.384 55.000 0.84 0.00 0.00 3.41
2595 4511 1.677217 GGGCCTGCTCTAGTTTCTGTG 60.677 57.143 0.84 0.00 0.00 3.66
2596 4512 1.082690 GCCTGCTCTAGTTTCTGTGC 58.917 55.000 0.00 0.00 0.00 4.57
2597 4513 1.338579 GCCTGCTCTAGTTTCTGTGCT 60.339 52.381 0.00 0.00 0.00 4.40
2598 4514 2.873649 GCCTGCTCTAGTTTCTGTGCTT 60.874 50.000 0.00 0.00 0.00 3.91
2599 4515 3.617531 GCCTGCTCTAGTTTCTGTGCTTA 60.618 47.826 0.00 0.00 0.00 3.09
2600 4516 4.569943 CCTGCTCTAGTTTCTGTGCTTAA 58.430 43.478 0.00 0.00 0.00 1.85
2601 4517 4.629200 CCTGCTCTAGTTTCTGTGCTTAAG 59.371 45.833 0.00 0.00 0.00 1.85
2602 4518 5.468540 TGCTCTAGTTTCTGTGCTTAAGA 57.531 39.130 6.67 0.00 0.00 2.10
2603 4519 6.042638 TGCTCTAGTTTCTGTGCTTAAGAT 57.957 37.500 6.67 0.00 0.00 2.40
2604 4520 7.170393 TGCTCTAGTTTCTGTGCTTAAGATA 57.830 36.000 6.67 0.00 0.00 1.98
2605 4521 7.611770 TGCTCTAGTTTCTGTGCTTAAGATAA 58.388 34.615 6.67 0.00 0.00 1.75
2606 4522 7.545965 TGCTCTAGTTTCTGTGCTTAAGATAAC 59.454 37.037 6.67 1.61 0.00 1.89
2607 4523 7.010645 GCTCTAGTTTCTGTGCTTAAGATAACC 59.989 40.741 6.67 0.00 0.00 2.85
2608 4524 7.903145 TCTAGTTTCTGTGCTTAAGATAACCA 58.097 34.615 6.67 0.00 0.00 3.67
2609 4525 8.540388 TCTAGTTTCTGTGCTTAAGATAACCAT 58.460 33.333 6.67 0.00 0.00 3.55
2610 4526 9.817809 CTAGTTTCTGTGCTTAAGATAACCATA 57.182 33.333 6.67 0.00 0.00 2.74
2612 4528 9.515226 AGTTTCTGTGCTTAAGATAACCATAAA 57.485 29.630 6.67 0.00 0.00 1.40
2613 4529 9.774742 GTTTCTGTGCTTAAGATAACCATAAAG 57.225 33.333 6.67 0.00 0.00 1.85
2614 4530 8.506168 TTCTGTGCTTAAGATAACCATAAAGG 57.494 34.615 6.67 0.00 45.67 3.11
2615 4531 7.857456 TCTGTGCTTAAGATAACCATAAAGGA 58.143 34.615 6.67 0.00 41.22 3.36
2616 4532 7.769044 TCTGTGCTTAAGATAACCATAAAGGAC 59.231 37.037 6.67 0.00 41.22 3.85
2617 4533 7.398829 TGTGCTTAAGATAACCATAAAGGACA 58.601 34.615 6.67 3.55 41.13 4.02
2618 4534 7.552687 TGTGCTTAAGATAACCATAAAGGACAG 59.447 37.037 6.67 0.00 39.38 3.51
2619 4535 7.769044 GTGCTTAAGATAACCATAAAGGACAGA 59.231 37.037 6.67 0.00 41.22 3.41
2620 4536 7.769044 TGCTTAAGATAACCATAAAGGACAGAC 59.231 37.037 6.67 0.00 41.22 3.51
2621 4537 7.226918 GCTTAAGATAACCATAAAGGACAGACC 59.773 40.741 6.67 0.00 41.22 3.85
2622 4538 5.632034 AGATAACCATAAAGGACAGACCC 57.368 43.478 0.00 0.00 41.22 4.46
2623 4539 5.036916 AGATAACCATAAAGGACAGACCCA 58.963 41.667 0.00 0.00 41.22 4.51
2624 4540 3.721087 AACCATAAAGGACAGACCCAG 57.279 47.619 0.00 0.00 41.22 4.45
2625 4541 2.632537 ACCATAAAGGACAGACCCAGT 58.367 47.619 0.00 0.00 41.22 4.00
2626 4542 2.305927 ACCATAAAGGACAGACCCAGTG 59.694 50.000 0.00 0.00 41.22 3.66
2627 4543 2.359900 CATAAAGGACAGACCCAGTGC 58.640 52.381 0.00 0.00 40.05 4.40
2628 4544 1.429930 TAAAGGACAGACCCAGTGCA 58.570 50.000 0.00 0.00 40.05 4.57
2629 4545 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
2630 4546 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
2631 4547 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
2632 4548 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
2633 4549 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
2634 4550 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
2635 4551 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
2636 4552 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
2637 4553 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
2638 4554 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
2639 4555 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
2640 4556 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
2641 4557 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
2642 4558 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
2643 4559 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
2644 4560 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
2645 4561 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
2646 4562 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
2647 4563 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
2648 4564 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
2656 4572 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
2657 4573 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
2658 4574 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
2659 4575 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
2660 4576 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
2661 4577 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
2662 4578 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
2664 4580 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
2665 4581 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
2666 4582 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
2667 4583 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
2668 4584 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
2669 4585 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
2670 4586 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
2671 4587 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
2672 4588 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
2673 4589 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
2674 4590 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
2675 4591 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
2676 4592 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
2677 4593 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
2678 4594 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
2679 4595 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
2680 4596 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
2681 4597 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
2682 4598 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
2683 4599 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
2684 4600 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
2685 4601 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
2686 4602 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
2687 4603 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
2688 4604 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
2689 4605 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
2690 4606 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
2691 4607 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
2692 4608 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
2693 4609 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
2694 4610 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
2695 4611 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
2696 4612 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
2697 4613 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
2708 4624 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
2709 4625 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
2710 4626 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
2711 4627 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
2713 4629 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
2714 4630 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
2715 4631 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
2716 4632 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
2717 4633 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
2718 4634 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
2719 4635 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
2720 4636 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
2729 4645 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
2730 4646 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
2731 4647 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
2732 4648 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
2733 4649 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
2734 4650 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
2735 4651 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
2736 4652 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
2737 4653 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
2738 4654 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
2749 4665 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
2750 4666 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
2751 4667 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
2752 4668 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
2753 4669 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
2754 4670 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
2755 4671 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
2761 4677 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
2762 4678 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
2763 4679 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
2764 4680 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
2765 4681 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
2766 4682 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
2767 4683 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
2822 4738 9.929180 TGCTAGTTTAAGATAACCATATGCTAG 57.071 33.333 0.00 0.00 0.00 3.42
2823 4739 9.930693 GCTAGTTTAAGATAACCATATGCTAGT 57.069 33.333 0.00 0.00 0.00 2.57
4019 5969 2.227865 GCTTTTTGGCTTGTGTATCCGA 59.772 45.455 0.00 0.00 0.00 4.55
4060 6010 0.598680 GCGTTGATGCGATAGAGGCT 60.599 55.000 0.00 0.00 39.76 4.58
4061 6011 1.135046 CGTTGATGCGATAGAGGCTG 58.865 55.000 0.00 0.00 39.76 4.85
4062 6012 1.269257 CGTTGATGCGATAGAGGCTGA 60.269 52.381 0.00 0.00 39.76 4.26
4063 6013 2.799562 CGTTGATGCGATAGAGGCTGAA 60.800 50.000 0.00 0.00 39.76 3.02
4064 6014 3.198068 GTTGATGCGATAGAGGCTGAAA 58.802 45.455 0.00 0.00 39.76 2.69
4065 6015 3.103447 TGATGCGATAGAGGCTGAAAG 57.897 47.619 0.00 0.00 39.76 2.62
4066 6016 2.695147 TGATGCGATAGAGGCTGAAAGA 59.305 45.455 0.00 0.00 33.58 2.52
4067 6017 2.879002 TGCGATAGAGGCTGAAAGAG 57.121 50.000 0.00 0.00 33.58 2.85
4068 6018 2.103373 TGCGATAGAGGCTGAAAGAGT 58.897 47.619 0.00 0.00 33.58 3.24
4069 6019 2.159184 TGCGATAGAGGCTGAAAGAGTG 60.159 50.000 0.00 0.00 33.58 3.51
4070 6020 2.159170 GCGATAGAGGCTGAAAGAGTGT 60.159 50.000 0.00 0.00 33.58 3.55
4071 6021 3.677424 GCGATAGAGGCTGAAAGAGTGTT 60.677 47.826 0.00 0.00 33.58 3.32
4072 6022 3.862267 CGATAGAGGCTGAAAGAGTGTTG 59.138 47.826 0.00 0.00 33.58 3.33
4073 6023 1.889545 AGAGGCTGAAAGAGTGTTGC 58.110 50.000 0.00 0.00 34.07 4.17
4074 6024 1.419387 AGAGGCTGAAAGAGTGTTGCT 59.581 47.619 0.00 0.00 34.07 3.91
4075 6025 2.634940 AGAGGCTGAAAGAGTGTTGCTA 59.365 45.455 0.00 0.00 34.07 3.49
4076 6026 3.262915 AGAGGCTGAAAGAGTGTTGCTAT 59.737 43.478 0.00 0.00 34.07 2.97
4077 6027 4.467795 AGAGGCTGAAAGAGTGTTGCTATA 59.532 41.667 0.00 0.00 34.07 1.31
4078 6028 4.508662 AGGCTGAAAGAGTGTTGCTATAC 58.491 43.478 0.00 0.00 34.07 1.47
4079 6029 4.020218 AGGCTGAAAGAGTGTTGCTATACA 60.020 41.667 0.00 0.00 34.07 2.29
4080 6030 4.093556 GGCTGAAAGAGTGTTGCTATACAC 59.906 45.833 8.62 8.62 46.86 2.90
4088 6038 4.245025 GTGTTGCTATACACACGACATG 57.755 45.455 10.93 0.00 46.00 3.21
4089 6039 2.670905 TGTTGCTATACACACGACATGC 59.329 45.455 0.00 0.00 0.00 4.06
4090 6040 1.934589 TGCTATACACACGACATGCC 58.065 50.000 0.00 0.00 0.00 4.40
4091 6041 1.480545 TGCTATACACACGACATGCCT 59.519 47.619 0.00 0.00 0.00 4.75
4092 6042 2.093711 TGCTATACACACGACATGCCTT 60.094 45.455 0.00 0.00 0.00 4.35
4093 6043 2.285220 GCTATACACACGACATGCCTTG 59.715 50.000 0.00 0.00 0.00 3.61
4094 6044 1.737838 ATACACACGACATGCCTTGG 58.262 50.000 0.00 0.00 0.00 3.61
4095 6045 0.682292 TACACACGACATGCCTTGGA 59.318 50.000 0.00 0.00 0.00 3.53
4096 6046 0.884704 ACACACGACATGCCTTGGAC 60.885 55.000 0.00 0.00 0.00 4.02
4097 6047 1.667830 ACACGACATGCCTTGGACG 60.668 57.895 0.00 0.00 36.08 4.79
4098 6048 1.374125 CACGACATGCCTTGGACGA 60.374 57.895 0.00 0.00 34.79 4.20
4099 6049 0.740868 CACGACATGCCTTGGACGAT 60.741 55.000 0.00 0.00 34.79 3.73
4100 6050 0.036388 ACGACATGCCTTGGACGATT 60.036 50.000 0.00 0.00 34.79 3.34
4101 6051 1.086696 CGACATGCCTTGGACGATTT 58.913 50.000 0.00 0.00 33.33 2.17
4102 6052 1.202065 CGACATGCCTTGGACGATTTG 60.202 52.381 0.00 0.00 33.33 2.32
4103 6053 1.812571 GACATGCCTTGGACGATTTGT 59.187 47.619 0.00 0.00 0.00 2.83
4104 6054 1.541147 ACATGCCTTGGACGATTTGTG 59.459 47.619 0.00 0.00 0.00 3.33
4105 6055 1.135315 CATGCCTTGGACGATTTGTGG 60.135 52.381 0.00 0.00 0.00 4.17
4106 6056 0.109532 TGCCTTGGACGATTTGTGGA 59.890 50.000 0.00 0.00 0.00 4.02
4107 6057 0.521735 GCCTTGGACGATTTGTGGAC 59.478 55.000 0.00 0.00 0.00 4.02
4108 6058 0.796312 CCTTGGACGATTTGTGGACG 59.204 55.000 0.00 0.00 0.00 4.79
4109 6059 1.606994 CCTTGGACGATTTGTGGACGA 60.607 52.381 0.00 0.00 0.00 4.20
4110 6060 2.346803 CTTGGACGATTTGTGGACGAT 58.653 47.619 0.00 0.00 0.00 3.73
4111 6061 3.517602 CTTGGACGATTTGTGGACGATA 58.482 45.455 0.00 0.00 0.00 2.92
4112 6062 3.159353 TGGACGATTTGTGGACGATAG 57.841 47.619 0.00 0.00 46.19 2.08
4127 6077 3.984508 CGATAGTACTGATCCAACCGT 57.015 47.619 5.39 0.00 0.00 4.83
4129 6079 4.781071 CGATAGTACTGATCCAACCGTAC 58.219 47.826 5.39 0.00 34.06 3.67
4130 6080 4.320057 CGATAGTACTGATCCAACCGTACC 60.320 50.000 5.39 0.00 34.30 3.34
4131 6081 2.811410 AGTACTGATCCAACCGTACCA 58.189 47.619 0.00 0.00 34.30 3.25
4132 6082 2.758979 AGTACTGATCCAACCGTACCAG 59.241 50.000 0.00 0.00 34.30 4.00
4133 6083 0.249398 ACTGATCCAACCGTACCAGC 59.751 55.000 0.00 0.00 0.00 4.85
4134 6084 0.806102 CTGATCCAACCGTACCAGCG 60.806 60.000 0.00 0.00 0.00 5.18
4135 6085 1.217244 GATCCAACCGTACCAGCGT 59.783 57.895 0.00 0.00 0.00 5.07
4136 6086 0.390735 GATCCAACCGTACCAGCGTT 60.391 55.000 0.00 0.00 0.00 4.84
4137 6087 0.672401 ATCCAACCGTACCAGCGTTG 60.672 55.000 0.00 0.00 0.00 4.10
4138 6088 1.301087 CCAACCGTACCAGCGTTGA 60.301 57.895 0.00 0.00 0.00 3.18
4139 6089 1.289109 CCAACCGTACCAGCGTTGAG 61.289 60.000 0.00 0.00 0.00 3.02
4156 6106 4.043200 GCAAAGTGCAGGCCGACC 62.043 66.667 0.00 0.00 44.26 4.79
4157 6107 3.726517 CAAAGTGCAGGCCGACCG 61.727 66.667 0.00 0.00 42.76 4.79
4163 6113 3.917760 GCAGGCCGACCGCTAGAT 61.918 66.667 0.00 0.00 42.76 1.98
4164 6114 2.336809 CAGGCCGACCGCTAGATC 59.663 66.667 0.00 0.00 42.76 2.75
4165 6115 2.123854 AGGCCGACCGCTAGATCA 60.124 61.111 0.00 0.00 42.76 2.92
4166 6116 1.756950 AGGCCGACCGCTAGATCAA 60.757 57.895 0.00 0.00 42.76 2.57
4167 6117 1.300233 GGCCGACCGCTAGATCAAG 60.300 63.158 0.00 0.00 37.74 3.02
4168 6118 1.300233 GCCGACCGCTAGATCAAGG 60.300 63.158 0.00 0.00 0.00 3.61
4169 6119 1.735376 GCCGACCGCTAGATCAAGGA 61.735 60.000 0.00 0.00 0.00 3.36
4170 6120 0.962489 CCGACCGCTAGATCAAGGAT 59.038 55.000 0.00 0.00 0.00 3.24
4171 6121 1.068194 CCGACCGCTAGATCAAGGATC 60.068 57.143 0.00 0.00 39.17 3.36
4172 6122 1.400371 CGACCGCTAGATCAAGGATCG 60.400 57.143 0.00 1.91 43.17 3.69
4173 6123 1.609555 GACCGCTAGATCAAGGATCGT 59.390 52.381 0.00 0.00 43.17 3.73
4174 6124 1.338337 ACCGCTAGATCAAGGATCGTG 59.662 52.381 0.00 0.00 43.17 4.35
4175 6125 1.413382 CGCTAGATCAAGGATCGTGC 58.587 55.000 0.00 12.82 43.17 5.34
4176 6126 1.269257 CGCTAGATCAAGGATCGTGCA 60.269 52.381 18.64 0.00 43.17 4.57
4177 6127 2.402305 GCTAGATCAAGGATCGTGCAG 58.598 52.381 15.88 7.96 43.17 4.41
4178 6128 2.223923 GCTAGATCAAGGATCGTGCAGT 60.224 50.000 15.88 0.00 43.17 4.40
4179 6129 2.306341 AGATCAAGGATCGTGCAGTG 57.694 50.000 0.00 0.00 43.17 3.66
4180 6130 1.552337 AGATCAAGGATCGTGCAGTGT 59.448 47.619 0.00 0.00 43.17 3.55
4181 6131 2.027745 AGATCAAGGATCGTGCAGTGTT 60.028 45.455 0.00 0.00 43.17 3.32
4182 6132 1.795768 TCAAGGATCGTGCAGTGTTC 58.204 50.000 0.00 0.00 0.00 3.18
4183 6133 0.439985 CAAGGATCGTGCAGTGTTCG 59.560 55.000 0.00 0.00 0.00 3.95
4184 6134 0.670546 AAGGATCGTGCAGTGTTCGG 60.671 55.000 0.00 0.00 0.00 4.30
4185 6135 2.740714 GGATCGTGCAGTGTTCGGC 61.741 63.158 0.00 0.00 35.44 5.54
4186 6136 1.738099 GATCGTGCAGTGTTCGGCT 60.738 57.895 0.00 0.00 35.86 5.52
4187 6137 1.959899 GATCGTGCAGTGTTCGGCTG 61.960 60.000 0.00 0.00 35.86 4.85
4188 6138 3.716006 CGTGCAGTGTTCGGCTGG 61.716 66.667 0.00 0.00 35.86 4.85
4189 6139 4.030452 GTGCAGTGTTCGGCTGGC 62.030 66.667 0.00 0.00 35.86 4.85
4190 6140 4.560743 TGCAGTGTTCGGCTGGCA 62.561 61.111 1.08 0.00 35.86 4.92
4191 6141 3.058160 GCAGTGTTCGGCTGGCAT 61.058 61.111 1.08 0.00 34.73 4.40
4192 6142 2.872557 CAGTGTTCGGCTGGCATG 59.127 61.111 1.08 0.00 0.00 4.06
4193 6143 3.058160 AGTGTTCGGCTGGCATGC 61.058 61.111 9.90 9.90 0.00 4.06
4194 6144 3.364441 GTGTTCGGCTGGCATGCA 61.364 61.111 21.36 4.79 34.04 3.96
4195 6145 2.361483 TGTTCGGCTGGCATGCAT 60.361 55.556 21.36 0.00 34.04 3.96
4196 6146 2.409055 TGTTCGGCTGGCATGCATC 61.409 57.895 21.36 7.28 34.04 3.91
4197 6147 3.204119 TTCGGCTGGCATGCATCG 61.204 61.111 21.36 16.15 34.04 3.84
4201 6151 4.266070 GCTGGCATGCATCGGCTG 62.266 66.667 21.36 18.23 41.91 4.85
4209 6159 3.923614 GCATCGGCTGCGTAGTAG 58.076 61.111 1.53 0.00 45.17 2.57
4210 6160 1.065928 GCATCGGCTGCGTAGTAGT 59.934 57.895 1.53 0.00 43.91 2.73
4211 6161 0.527817 GCATCGGCTGCGTAGTAGTT 60.528 55.000 1.53 0.00 43.91 2.24
4212 6162 1.478137 CATCGGCTGCGTAGTAGTTC 58.522 55.000 1.53 0.00 43.91 3.01
4213 6163 0.384669 ATCGGCTGCGTAGTAGTTCC 59.615 55.000 1.53 0.00 43.91 3.62
4214 6164 1.585521 CGGCTGCGTAGTAGTTCCG 60.586 63.158 1.53 2.12 43.91 4.30
4215 6165 1.805254 GGCTGCGTAGTAGTTCCGA 59.195 57.895 1.53 0.00 43.91 4.55
4216 6166 0.248539 GGCTGCGTAGTAGTTCCGAG 60.249 60.000 1.53 0.00 43.91 4.63
4217 6167 0.248539 GCTGCGTAGTAGTTCCGAGG 60.249 60.000 1.53 0.00 43.91 4.63
4218 6168 0.248539 CTGCGTAGTAGTTCCGAGGC 60.249 60.000 0.00 0.00 34.87 4.70
4273 6232 6.432403 AATCATTTTGGCTTTGGGAAGTTA 57.568 33.333 0.00 0.00 35.25 2.24
4340 6428 7.040478 TGTTTAGTGGGAAGAGATGTTTTGATG 60.040 37.037 0.00 0.00 0.00 3.07
4351 6439 6.157645 AGAGATGTTTTGATGGACTATGAGGT 59.842 38.462 0.00 0.00 0.00 3.85
4376 6464 3.988819 TGTGATGACTTCGTCAATCACA 58.011 40.909 22.94 22.94 45.96 3.58
4632 8036 0.475906 CTCCCCTCACCCATTCCATC 59.524 60.000 0.00 0.00 0.00 3.51
4681 10746 4.493747 GACGCCTCTTCCGACCCG 62.494 72.222 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 4.038282 TGCTGCACTCACAATGAAAAGATT 59.962 37.500 0.00 0.00 0.00 2.40
198 200 4.938129 CAAATTCGAAATTTGCTGCACTC 58.062 39.130 0.00 0.00 33.07 3.51
213 215 6.198029 TGAAACACATAAACACAGCAAATTCG 59.802 34.615 0.00 0.00 0.00 3.34
229 231 4.174411 TCGAATCGACTCTGAAACACAT 57.826 40.909 0.00 0.00 0.00 3.21
306 308 5.313280 TGCCCCTTCTGTAAACTCTTTTA 57.687 39.130 0.00 0.00 0.00 1.52
339 341 2.100631 GTGCCGACCGACCATGAAG 61.101 63.158 0.00 0.00 0.00 3.02
355 357 5.586243 CCTTTATCCACACCATAGACAAGTG 59.414 44.000 0.00 0.00 37.53 3.16
364 366 3.333680 ACAACCTCCTTTATCCACACCAT 59.666 43.478 0.00 0.00 0.00 3.55
368 370 2.983192 TCCACAACCTCCTTTATCCACA 59.017 45.455 0.00 0.00 0.00 4.17
370 372 2.576191 CCTCCACAACCTCCTTTATCCA 59.424 50.000 0.00 0.00 0.00 3.41
394 396 3.259374 TGATCAGGAGACCACTTGAACTC 59.741 47.826 0.00 0.00 30.33 3.01
440 442 6.126863 TCAATGGGATGGTGTTATATCCTC 57.873 41.667 0.00 0.00 42.03 3.71
467 469 7.551035 AACAATTCAGCTATCTCTGATTCAC 57.449 36.000 0.00 0.00 42.12 3.18
586 588 3.665745 AATTTCAGCAATGGTCACACC 57.334 42.857 0.00 0.00 39.22 4.16
587 589 4.370917 ACAAATTTCAGCAATGGTCACAC 58.629 39.130 0.00 0.00 0.00 3.82
588 590 4.099113 TGACAAATTTCAGCAATGGTCACA 59.901 37.500 0.00 0.00 36.10 3.58
590 592 4.933505 TGACAAATTTCAGCAATGGTCA 57.066 36.364 0.00 0.00 37.53 4.02
591 593 6.601741 TTTTGACAAATTTCAGCAATGGTC 57.398 33.333 0.50 0.00 33.50 4.02
592 594 6.513720 GCATTTTGACAAATTTCAGCAATGGT 60.514 34.615 0.50 0.00 33.02 3.55
593 595 5.854338 GCATTTTGACAAATTTCAGCAATGG 59.146 36.000 0.50 3.39 33.02 3.16
595 597 6.664515 CAGCATTTTGACAAATTTCAGCAAT 58.335 32.000 0.50 0.00 29.41 3.56
608 915 4.551410 GCAACTTTTCAGCAGCATTTTGAC 60.551 41.667 0.00 0.00 0.00 3.18
617 924 5.368256 ACAAGATAGCAACTTTTCAGCAG 57.632 39.130 0.00 0.00 0.00 4.24
663 973 6.040729 TGACATGAAAACATCACCAACTCAAT 59.959 34.615 0.00 0.00 41.93 2.57
696 1007 2.165030 AGCTATGGTGCAACATTTCAGC 59.835 45.455 24.75 24.52 39.98 4.26
711 1022 5.522456 TCAACAACAAAAAGAGCAGCTATG 58.478 37.500 0.00 0.00 0.00 2.23
716 1027 6.651755 ACATTTCAACAACAAAAAGAGCAG 57.348 33.333 0.00 0.00 0.00 4.24
721 1032 7.851963 CCAAGCATACATTTCAACAACAAAAAG 59.148 33.333 0.00 0.00 0.00 2.27
746 1057 0.253327 CCCTTACCTCTTCACAGCCC 59.747 60.000 0.00 0.00 0.00 5.19
749 1060 6.608002 ACTTCTATACCCTTACCTCTTCACAG 59.392 42.308 0.00 0.00 0.00 3.66
750 1061 6.500336 ACTTCTATACCCTTACCTCTTCACA 58.500 40.000 0.00 0.00 0.00 3.58
751 1062 6.834969 AGACTTCTATACCCTTACCTCTTCAC 59.165 42.308 0.00 0.00 0.00 3.18
793 1105 4.715527 ACCATTAGTGACTAACGGAGAC 57.284 45.455 22.68 0.00 33.57 3.36
810 1122 7.175104 TCAGTTTTCTCTAGCCAAAATACCAT 58.825 34.615 2.98 0.00 0.00 3.55
835 1147 6.377146 CCAACTTGCCAATATACCACTACTTT 59.623 38.462 0.00 0.00 0.00 2.66
905 1217 4.775236 AGGATTGAGACAATAGCCAGAAC 58.225 43.478 0.00 0.00 0.00 3.01
1114 1426 2.231721 GACCTAGAAAGCAGGAGAACGT 59.768 50.000 0.00 0.00 36.61 3.99
1314 1678 7.734924 AATAGAATAGCGCATGAAAATCTCA 57.265 32.000 11.47 0.00 38.81 3.27
1421 2235 9.032624 TGCAGAAGTACTAAATCTACCTAAACT 57.967 33.333 0.00 0.00 0.00 2.66
1432 2246 7.179694 TGGGTAACTACTGCAGAAGTACTAAAT 59.820 37.037 23.35 0.00 40.56 1.40
1496 2310 6.713903 AGTCATCTATGGCCATACAAAATCAG 59.286 38.462 21.94 11.29 31.37 2.90
1814 2659 3.971245 AAGAACACCAGCTAGAAGGAG 57.029 47.619 7.79 2.87 0.00 3.69
1974 3471 1.115326 GGCCAACAAGCAGAAAGGGT 61.115 55.000 0.00 0.00 0.00 4.34
2297 4212 9.546428 CAAGAACACAAGATATATACCATGTCA 57.454 33.333 0.00 0.00 0.00 3.58
2518 4433 3.248029 GCAGGAAGCACACAGTCG 58.752 61.111 0.00 0.00 44.79 4.18
2592 4508 7.398829 TGTCCTTTATGGTTATCTTAAGCACA 58.601 34.615 0.00 0.00 37.07 4.57
2593 4509 7.769044 TCTGTCCTTTATGGTTATCTTAAGCAC 59.231 37.037 0.00 0.00 37.07 4.40
2594 4510 7.769044 GTCTGTCCTTTATGGTTATCTTAAGCA 59.231 37.037 0.00 2.07 37.07 3.91
2595 4511 7.226918 GGTCTGTCCTTTATGGTTATCTTAAGC 59.773 40.741 0.00 0.00 37.07 3.09
2596 4512 7.715686 GGGTCTGTCCTTTATGGTTATCTTAAG 59.284 40.741 0.00 0.00 37.07 1.85
2597 4513 7.183112 TGGGTCTGTCCTTTATGGTTATCTTAA 59.817 37.037 0.00 0.00 37.07 1.85
2598 4514 6.674861 TGGGTCTGTCCTTTATGGTTATCTTA 59.325 38.462 0.00 0.00 37.07 2.10
2599 4515 5.491078 TGGGTCTGTCCTTTATGGTTATCTT 59.509 40.000 0.00 0.00 37.07 2.40
2600 4516 5.036916 TGGGTCTGTCCTTTATGGTTATCT 58.963 41.667 0.00 0.00 37.07 1.98
2601 4517 5.104485 ACTGGGTCTGTCCTTTATGGTTATC 60.104 44.000 0.00 0.00 37.07 1.75
2602 4518 4.788617 ACTGGGTCTGTCCTTTATGGTTAT 59.211 41.667 0.00 0.00 37.07 1.89
2603 4519 4.019681 CACTGGGTCTGTCCTTTATGGTTA 60.020 45.833 0.00 0.00 37.07 2.85
2604 4520 2.986728 ACTGGGTCTGTCCTTTATGGTT 59.013 45.455 0.00 0.00 37.07 3.67
2605 4521 2.305927 CACTGGGTCTGTCCTTTATGGT 59.694 50.000 0.00 0.00 37.07 3.55
2606 4522 2.941415 GCACTGGGTCTGTCCTTTATGG 60.941 54.545 0.00 0.00 36.25 2.74
2607 4523 2.290260 TGCACTGGGTCTGTCCTTTATG 60.290 50.000 0.00 0.00 36.25 1.90
2608 4524 1.985159 TGCACTGGGTCTGTCCTTTAT 59.015 47.619 0.00 0.00 36.25 1.40
2609 4525 1.429930 TGCACTGGGTCTGTCCTTTA 58.570 50.000 0.00 0.00 36.25 1.85
2610 4526 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
2611 4527 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
2612 4528 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
2613 4529 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
2614 4530 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
2615 4531 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
2616 4532 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
2617 4533 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
2618 4534 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
2619 4535 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
2620 4536 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
2621 4537 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
2622 4538 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
2623 4539 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
2624 4540 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
2625 4541 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
2626 4542 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
2627 4543 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
2628 4544 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
2629 4545 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
2630 4546 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
2631 4547 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
2632 4548 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
2639 4555 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
2640 4556 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
2641 4557 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
2642 4558 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
2643 4559 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
2644 4560 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
2645 4561 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
2647 4563 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
2648 4564 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
2649 4565 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
2650 4566 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
2651 4567 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
2652 4568 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
2653 4569 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
2654 4570 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
2655 4571 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
2656 4572 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
2657 4573 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
2658 4574 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
2659 4575 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
2660 4576 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
2661 4577 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
2662 4578 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
2663 4579 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
2664 4580 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
2665 4581 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
2666 4582 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
2667 4583 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
2668 4584 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
2669 4585 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
2670 4586 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
2671 4587 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
2672 4588 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
2673 4589 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
2674 4590 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
2675 4591 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
2676 4592 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
2677 4593 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
2678 4594 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
2679 4595 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
2689 4605 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
2690 4606 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
2691 4607 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
2692 4608 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
2693 4609 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
2694 4610 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
2695 4611 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
2696 4612 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
2697 4613 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
2698 4614 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
2699 4615 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
2700 4616 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
2701 4617 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
2702 4618 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
2713 4629 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
2714 4630 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
2715 4631 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
2716 4632 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
2717 4633 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
2718 4634 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2719 4635 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
2720 4636 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
2721 4637 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
2722 4638 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
2723 4639 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
2724 4640 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
2725 4641 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
2726 4642 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
2727 4643 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
2728 4644 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
2729 4645 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
2730 4646 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
2731 4647 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
2732 4648 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
2733 4649 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
2734 4650 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
2735 4651 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
2736 4652 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
2737 4653 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
2738 4654 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
2739 4655 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
2740 4656 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
2741 4657 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
2742 4658 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
2743 4659 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
2744 4660 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
2745 4661 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
2746 4662 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
2747 4663 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
2748 4664 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
2749 4665 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
2750 4666 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
2763 4679 4.421515 CACAGAGGGCAGGCCTGG 62.422 72.222 33.46 18.09 36.10 4.45
2766 4682 2.484287 TTAAGCACAGAGGGCAGGCC 62.484 60.000 4.33 4.33 0.00 5.19
2767 4683 1.002134 TTAAGCACAGAGGGCAGGC 60.002 57.895 0.00 0.00 0.00 4.85
2768 4684 0.615331 TCTTAAGCACAGAGGGCAGG 59.385 55.000 0.00 0.00 0.00 4.85
2769 4685 2.706339 ATCTTAAGCACAGAGGGCAG 57.294 50.000 0.00 0.00 0.00 4.85
2770 4686 3.370527 GGTTATCTTAAGCACAGAGGGCA 60.371 47.826 0.00 0.00 0.00 5.36
2771 4687 3.206964 GGTTATCTTAAGCACAGAGGGC 58.793 50.000 0.00 0.00 0.00 5.19
2772 4688 4.487714 TGGTTATCTTAAGCACAGAGGG 57.512 45.455 0.00 0.00 0.00 4.30
2773 4689 6.148480 GCATATGGTTATCTTAAGCACAGAGG 59.852 42.308 4.56 0.00 0.00 3.69
2774 4690 6.933521 AGCATATGGTTATCTTAAGCACAGAG 59.066 38.462 0.40 0.00 0.00 3.35
2775 4691 6.830912 AGCATATGGTTATCTTAAGCACAGA 58.169 36.000 0.40 0.00 0.00 3.41
2776 4692 7.875041 ACTAGCATATGGTTATCTTAAGCACAG 59.125 37.037 13.49 2.05 0.00 3.66
2806 4722 9.686683 AGAACAAAAACTAGCATATGGTTATCT 57.313 29.630 13.49 0.00 31.40 1.98
2809 4725 9.290988 TCAAGAACAAAAACTAGCATATGGTTA 57.709 29.630 13.49 0.00 31.40 2.85
2810 4726 8.177119 TCAAGAACAAAAACTAGCATATGGTT 57.823 30.769 13.49 1.26 33.34 3.67
2811 4727 7.759489 TCAAGAACAAAAACTAGCATATGGT 57.241 32.000 12.78 12.78 0.00 3.55
2812 4728 8.680903 AGATCAAGAACAAAAACTAGCATATGG 58.319 33.333 4.56 0.00 0.00 2.74
2963 4882 5.507985 GCAATAGCAACCAAGTCTGAAAACT 60.508 40.000 0.00 0.00 41.58 2.66
4019 5969 7.425606 ACGCTCAATATTTCTGAAACAAAACT 58.574 30.769 4.73 0.00 0.00 2.66
4068 6018 2.670905 GCATGTCGTGTGTATAGCAACA 59.329 45.455 0.00 0.00 0.00 3.33
4069 6019 2.030457 GGCATGTCGTGTGTATAGCAAC 59.970 50.000 0.00 0.00 0.00 4.17
4070 6020 2.093711 AGGCATGTCGTGTGTATAGCAA 60.094 45.455 0.00 0.00 0.00 3.91
4071 6021 1.480545 AGGCATGTCGTGTGTATAGCA 59.519 47.619 0.00 0.00 0.00 3.49
4072 6022 2.225068 AGGCATGTCGTGTGTATAGC 57.775 50.000 0.00 0.00 0.00 2.97
4073 6023 2.866156 CCAAGGCATGTCGTGTGTATAG 59.134 50.000 12.27 0.00 0.00 1.31
4074 6024 2.498078 TCCAAGGCATGTCGTGTGTATA 59.502 45.455 12.27 0.00 0.00 1.47
4075 6025 1.277842 TCCAAGGCATGTCGTGTGTAT 59.722 47.619 12.27 0.00 0.00 2.29
4076 6026 0.682292 TCCAAGGCATGTCGTGTGTA 59.318 50.000 12.27 0.00 0.00 2.90
4077 6027 0.884704 GTCCAAGGCATGTCGTGTGT 60.885 55.000 12.27 0.00 0.00 3.72
4078 6028 1.868997 GTCCAAGGCATGTCGTGTG 59.131 57.895 12.27 4.22 0.00 3.82
4079 6029 1.667830 CGTCCAAGGCATGTCGTGT 60.668 57.895 12.27 0.00 0.00 4.49
4080 6030 0.740868 ATCGTCCAAGGCATGTCGTG 60.741 55.000 6.23 6.23 0.00 4.35
4081 6031 0.036388 AATCGTCCAAGGCATGTCGT 60.036 50.000 0.00 0.00 0.00 4.34
4082 6032 1.086696 AAATCGTCCAAGGCATGTCG 58.913 50.000 0.00 0.00 0.00 4.35
4083 6033 1.812571 ACAAATCGTCCAAGGCATGTC 59.187 47.619 0.00 0.00 0.00 3.06
4084 6034 1.541147 CACAAATCGTCCAAGGCATGT 59.459 47.619 0.00 0.00 0.00 3.21
4085 6035 1.135315 CCACAAATCGTCCAAGGCATG 60.135 52.381 0.00 0.00 0.00 4.06
4086 6036 1.176527 CCACAAATCGTCCAAGGCAT 58.823 50.000 0.00 0.00 0.00 4.40
4087 6037 0.109532 TCCACAAATCGTCCAAGGCA 59.890 50.000 0.00 0.00 0.00 4.75
4088 6038 0.521735 GTCCACAAATCGTCCAAGGC 59.478 55.000 0.00 0.00 0.00 4.35
4089 6039 0.796312 CGTCCACAAATCGTCCAAGG 59.204 55.000 0.00 0.00 0.00 3.61
4090 6040 1.790755 TCGTCCACAAATCGTCCAAG 58.209 50.000 0.00 0.00 0.00 3.61
4091 6041 2.465860 ATCGTCCACAAATCGTCCAA 57.534 45.000 0.00 0.00 0.00 3.53
4092 6042 2.494471 ACTATCGTCCACAAATCGTCCA 59.506 45.455 0.00 0.00 0.00 4.02
4093 6043 3.160777 ACTATCGTCCACAAATCGTCC 57.839 47.619 0.00 0.00 0.00 4.79
4094 6044 4.733887 CAGTACTATCGTCCACAAATCGTC 59.266 45.833 0.00 0.00 0.00 4.20
4095 6045 4.397103 TCAGTACTATCGTCCACAAATCGT 59.603 41.667 0.00 0.00 0.00 3.73
4096 6046 4.916870 TCAGTACTATCGTCCACAAATCG 58.083 43.478 0.00 0.00 0.00 3.34
4097 6047 5.921408 GGATCAGTACTATCGTCCACAAATC 59.079 44.000 0.00 0.00 0.00 2.17
4098 6048 5.362717 TGGATCAGTACTATCGTCCACAAAT 59.637 40.000 11.51 0.00 31.24 2.32
4099 6049 4.707934 TGGATCAGTACTATCGTCCACAAA 59.292 41.667 11.51 0.00 31.24 2.83
4100 6050 4.274978 TGGATCAGTACTATCGTCCACAA 58.725 43.478 11.51 0.00 31.24 3.33
4101 6051 3.893521 TGGATCAGTACTATCGTCCACA 58.106 45.455 11.51 1.42 31.24 4.17
4102 6052 4.499357 GGTTGGATCAGTACTATCGTCCAC 60.499 50.000 13.95 10.53 35.63 4.02
4103 6053 3.635373 GGTTGGATCAGTACTATCGTCCA 59.365 47.826 11.51 11.51 34.18 4.02
4104 6054 3.304525 CGGTTGGATCAGTACTATCGTCC 60.305 52.174 0.00 1.68 0.00 4.79
4105 6055 3.314635 ACGGTTGGATCAGTACTATCGTC 59.685 47.826 0.00 0.00 0.00 4.20
4106 6056 3.285484 ACGGTTGGATCAGTACTATCGT 58.715 45.455 0.00 0.00 0.00 3.73
4107 6057 3.984508 ACGGTTGGATCAGTACTATCG 57.015 47.619 0.00 0.00 0.00 2.92
4108 6058 4.581824 TGGTACGGTTGGATCAGTACTATC 59.418 45.833 0.00 0.00 38.41 2.08
4109 6059 4.539726 TGGTACGGTTGGATCAGTACTAT 58.460 43.478 0.00 0.00 38.41 2.12
4110 6060 3.949754 CTGGTACGGTTGGATCAGTACTA 59.050 47.826 0.00 0.00 38.41 1.82
4111 6061 2.758979 CTGGTACGGTTGGATCAGTACT 59.241 50.000 0.00 0.00 38.41 2.73
4112 6062 2.737679 GCTGGTACGGTTGGATCAGTAC 60.738 54.545 0.00 1.12 37.92 2.73
4113 6063 1.479323 GCTGGTACGGTTGGATCAGTA 59.521 52.381 0.00 0.00 36.83 2.74
4114 6064 0.249398 GCTGGTACGGTTGGATCAGT 59.751 55.000 0.00 0.00 36.83 3.41
4115 6065 0.806102 CGCTGGTACGGTTGGATCAG 60.806 60.000 0.00 0.00 36.83 2.90
4116 6066 1.216977 CGCTGGTACGGTTGGATCA 59.783 57.895 0.00 0.00 36.83 2.92
4117 6067 0.390735 AACGCTGGTACGGTTGGATC 60.391 55.000 0.00 0.00 36.83 3.36
4118 6068 0.672401 CAACGCTGGTACGGTTGGAT 60.672 55.000 8.83 0.00 36.83 3.41
4119 6069 1.301087 CAACGCTGGTACGGTTGGA 60.301 57.895 8.83 0.00 36.83 3.53
4120 6070 1.289109 CTCAACGCTGGTACGGTTGG 61.289 60.000 13.93 5.50 36.83 3.77
4121 6071 1.897398 GCTCAACGCTGGTACGGTTG 61.897 60.000 9.91 9.91 36.83 3.77
4122 6072 1.666872 GCTCAACGCTGGTACGGTT 60.667 57.895 0.00 0.00 36.83 4.44
4123 6073 2.048503 GCTCAACGCTGGTACGGT 60.049 61.111 0.00 0.00 36.83 4.83
4124 6074 1.225376 TTTGCTCAACGCTGGTACGG 61.225 55.000 0.00 0.00 40.11 4.02
4125 6075 0.163788 CTTTGCTCAACGCTGGTACG 59.836 55.000 0.00 0.00 40.11 3.67
4126 6076 1.069906 CACTTTGCTCAACGCTGGTAC 60.070 52.381 0.00 0.00 40.11 3.34
4127 6077 1.225855 CACTTTGCTCAACGCTGGTA 58.774 50.000 0.00 0.00 40.11 3.25
4128 6078 2.024918 CACTTTGCTCAACGCTGGT 58.975 52.632 0.00 0.00 40.11 4.00
4129 6079 1.370900 GCACTTTGCTCAACGCTGG 60.371 57.895 0.00 0.00 40.96 4.85
4130 6080 0.659417 CTGCACTTTGCTCAACGCTG 60.659 55.000 0.00 0.00 45.31 5.18
4131 6081 1.650912 CTGCACTTTGCTCAACGCT 59.349 52.632 0.00 0.00 45.31 5.07
4132 6082 1.370900 CCTGCACTTTGCTCAACGC 60.371 57.895 0.00 0.00 45.31 4.84
4133 6083 1.370900 GCCTGCACTTTGCTCAACG 60.371 57.895 0.00 0.00 45.31 4.10
4134 6084 1.006922 GGCCTGCACTTTGCTCAAC 60.007 57.895 0.00 0.00 45.31 3.18
4135 6085 2.554636 CGGCCTGCACTTTGCTCAA 61.555 57.895 0.00 0.00 45.31 3.02
4136 6086 2.979676 CGGCCTGCACTTTGCTCA 60.980 61.111 0.00 0.00 45.31 4.26
4137 6087 2.669569 TCGGCCTGCACTTTGCTC 60.670 61.111 0.00 0.00 45.31 4.26
4138 6088 2.980233 GTCGGCCTGCACTTTGCT 60.980 61.111 0.00 0.00 45.31 3.91
4139 6089 4.043200 GGTCGGCCTGCACTTTGC 62.043 66.667 0.00 0.00 45.29 3.68
4140 6090 3.726517 CGGTCGGCCTGCACTTTG 61.727 66.667 3.66 0.00 0.00 2.77
4146 6096 3.850095 GATCTAGCGGTCGGCCTGC 62.850 68.421 13.81 13.81 45.17 4.85
4147 6097 2.016393 TTGATCTAGCGGTCGGCCTG 62.016 60.000 3.66 0.00 45.17 4.85
4148 6098 1.739338 CTTGATCTAGCGGTCGGCCT 61.739 60.000 3.66 0.00 45.17 5.19
4149 6099 1.300233 CTTGATCTAGCGGTCGGCC 60.300 63.158 0.00 0.00 45.17 6.13
4150 6100 1.300233 CCTTGATCTAGCGGTCGGC 60.300 63.158 0.00 0.00 44.05 5.54
4151 6101 0.962489 ATCCTTGATCTAGCGGTCGG 59.038 55.000 0.00 0.00 0.00 4.79
4152 6102 1.400371 CGATCCTTGATCTAGCGGTCG 60.400 57.143 11.49 11.49 36.96 4.79
4153 6103 1.609555 ACGATCCTTGATCTAGCGGTC 59.390 52.381 0.00 0.00 36.96 4.79
4154 6104 1.338337 CACGATCCTTGATCTAGCGGT 59.662 52.381 0.00 0.00 36.96 5.68
4155 6105 1.932604 GCACGATCCTTGATCTAGCGG 60.933 57.143 0.00 0.00 36.96 5.52
4156 6106 1.269257 TGCACGATCCTTGATCTAGCG 60.269 52.381 0.00 0.42 38.43 4.26
4157 6107 2.223923 ACTGCACGATCCTTGATCTAGC 60.224 50.000 0.00 6.60 36.96 3.42
4158 6108 3.181482 ACACTGCACGATCCTTGATCTAG 60.181 47.826 0.00 0.00 36.96 2.43
4159 6109 2.760650 ACACTGCACGATCCTTGATCTA 59.239 45.455 0.00 0.00 36.96 1.98
4160 6110 1.552337 ACACTGCACGATCCTTGATCT 59.448 47.619 0.00 0.00 36.96 2.75
4161 6111 2.015736 ACACTGCACGATCCTTGATC 57.984 50.000 0.00 0.00 35.88 2.92
4162 6112 2.350522 GAACACTGCACGATCCTTGAT 58.649 47.619 0.00 0.00 0.00 2.57
4163 6113 1.795768 GAACACTGCACGATCCTTGA 58.204 50.000 0.00 0.00 0.00 3.02
4164 6114 0.439985 CGAACACTGCACGATCCTTG 59.560 55.000 0.00 0.00 0.00 3.61
4165 6115 0.670546 CCGAACACTGCACGATCCTT 60.671 55.000 0.00 0.00 0.00 3.36
4166 6116 1.079819 CCGAACACTGCACGATCCT 60.080 57.895 0.00 0.00 0.00 3.24
4167 6117 2.740714 GCCGAACACTGCACGATCC 61.741 63.158 0.00 0.00 0.00 3.36
4168 6118 1.738099 AGCCGAACACTGCACGATC 60.738 57.895 0.00 0.00 0.00 3.69
4169 6119 2.029288 CAGCCGAACACTGCACGAT 61.029 57.895 0.00 0.00 0.00 3.73
4170 6120 2.661537 CAGCCGAACACTGCACGA 60.662 61.111 0.00 0.00 0.00 4.35
4171 6121 3.716006 CCAGCCGAACACTGCACG 61.716 66.667 0.00 0.00 33.65 5.34
4172 6122 4.030452 GCCAGCCGAACACTGCAC 62.030 66.667 0.00 0.00 33.65 4.57
4173 6123 3.848301 ATGCCAGCCGAACACTGCA 62.848 57.895 0.00 0.00 33.65 4.41
4174 6124 3.058160 ATGCCAGCCGAACACTGC 61.058 61.111 0.00 0.00 33.65 4.40
4175 6125 2.872557 CATGCCAGCCGAACACTG 59.127 61.111 0.00 0.00 34.82 3.66
4176 6126 3.058160 GCATGCCAGCCGAACACT 61.058 61.111 6.36 0.00 0.00 3.55
4177 6127 2.603135 GATGCATGCCAGCCGAACAC 62.603 60.000 16.68 0.00 0.00 3.32
4178 6128 2.361483 ATGCATGCCAGCCGAACA 60.361 55.556 16.68 0.00 0.00 3.18
4179 6129 2.410469 GATGCATGCCAGCCGAAC 59.590 61.111 16.68 0.00 0.00 3.95
4180 6130 3.204119 CGATGCATGCCAGCCGAA 61.204 61.111 16.68 0.00 0.00 4.30
4184 6134 4.266070 CAGCCGATGCATGCCAGC 62.266 66.667 16.68 12.46 41.13 4.85
4193 6143 1.478137 GAACTACTACGCAGCCGATG 58.522 55.000 0.00 0.00 38.29 3.84
4194 6144 0.384669 GGAACTACTACGCAGCCGAT 59.615 55.000 0.00 0.00 38.29 4.18
4195 6145 1.805254 GGAACTACTACGCAGCCGA 59.195 57.895 0.00 0.00 38.29 5.54
4196 6146 1.585521 CGGAACTACTACGCAGCCG 60.586 63.158 0.00 0.00 41.14 5.52
4197 6147 0.248539 CTCGGAACTACTACGCAGCC 60.249 60.000 0.00 0.00 0.00 4.85
4198 6148 0.248539 CCTCGGAACTACTACGCAGC 60.249 60.000 0.00 0.00 0.00 5.25
4199 6149 0.248539 GCCTCGGAACTACTACGCAG 60.249 60.000 0.00 0.00 0.00 5.18
4200 6150 0.679002 AGCCTCGGAACTACTACGCA 60.679 55.000 0.00 0.00 0.00 5.24
4201 6151 0.248539 CAGCCTCGGAACTACTACGC 60.249 60.000 0.00 0.00 0.00 4.42
4202 6152 1.376543 TCAGCCTCGGAACTACTACG 58.623 55.000 0.00 0.00 0.00 3.51
4203 6153 3.863142 TTTCAGCCTCGGAACTACTAC 57.137 47.619 0.00 0.00 0.00 2.73
4204 6154 5.419788 TGTAATTTCAGCCTCGGAACTACTA 59.580 40.000 0.00 0.00 0.00 1.82
4205 6155 3.983044 AATTTCAGCCTCGGAACTACT 57.017 42.857 0.00 0.00 0.00 2.57
4206 6156 4.501071 TGTAATTTCAGCCTCGGAACTAC 58.499 43.478 0.00 0.00 0.00 2.73
4207 6157 4.464951 TCTGTAATTTCAGCCTCGGAACTA 59.535 41.667 7.18 0.00 35.63 2.24
4208 6158 3.260884 TCTGTAATTTCAGCCTCGGAACT 59.739 43.478 7.18 0.00 35.63 3.01
4209 6159 3.371285 GTCTGTAATTTCAGCCTCGGAAC 59.629 47.826 7.18 0.00 35.63 3.62
4210 6160 3.260884 AGTCTGTAATTTCAGCCTCGGAA 59.739 43.478 7.18 0.00 35.63 4.30
4211 6161 2.832129 AGTCTGTAATTTCAGCCTCGGA 59.168 45.455 7.18 0.00 35.63 4.55
4212 6162 3.252974 AGTCTGTAATTTCAGCCTCGG 57.747 47.619 7.18 0.00 35.63 4.63
4213 6163 3.304559 CGAAGTCTGTAATTTCAGCCTCG 59.695 47.826 7.18 10.30 35.63 4.63
4214 6164 3.619038 CCGAAGTCTGTAATTTCAGCCTC 59.381 47.826 7.18 3.39 35.63 4.70
4215 6165 3.600388 CCGAAGTCTGTAATTTCAGCCT 58.400 45.455 7.18 0.00 35.63 4.58
4216 6166 2.678336 CCCGAAGTCTGTAATTTCAGCC 59.322 50.000 7.18 0.00 35.63 4.85
4217 6167 2.096013 GCCCGAAGTCTGTAATTTCAGC 59.904 50.000 7.18 3.41 35.63 4.26
4218 6168 3.600388 AGCCCGAAGTCTGTAATTTCAG 58.400 45.455 5.76 5.76 36.85 3.02
4314 6402 6.361433 TCAAAACATCTCTTCCCACTAAACA 58.639 36.000 0.00 0.00 0.00 2.83
4340 6428 4.631813 GTCATCACAAACACCTCATAGTCC 59.368 45.833 0.00 0.00 0.00 3.85
4376 6464 3.120616 CGTGTGTTAATCGTGTCGACAAT 59.879 43.478 21.95 8.53 39.18 2.71
4482 7737 2.543430 GCGACATGCCATTGTTTGTTTT 59.457 40.909 0.00 0.00 37.76 2.43
4681 10746 1.066918 CGCGGAGTGGGTATGGTAC 59.933 63.158 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.