Multiple sequence alignment - TraesCS6B01G242800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G242800 chr6B 100.000 6493 0 0 1 6493 431709235 431702743 0.000000e+00 11991.0
1 TraesCS6B01G242800 chr6B 92.800 625 37 5 12 635 705434417 705433800 0.000000e+00 898.0
2 TraesCS6B01G242800 chr6B 91.994 637 48 3 1 635 91205884 91205249 0.000000e+00 891.0
3 TraesCS6B01G242800 chr6B 91.036 647 48 10 1 639 604112678 604113322 0.000000e+00 865.0
4 TraesCS6B01G242800 chr6B 80.465 645 79 25 3325 3964 89423211 89423813 3.570000e-122 449.0
5 TraesCS6B01G242800 chr6B 95.050 202 8 2 3764 3964 431707878 431707678 3.780000e-82 316.0
6 TraesCS6B01G242800 chr6B 98.182 110 2 0 3965 4074 96347747 96347638 6.640000e-45 193.0
7 TraesCS6B01G242800 chr5D 87.863 2653 222 47 1371 3965 554157409 554160019 0.000000e+00 3024.0
8 TraesCS6B01G242800 chr5D 86.697 2601 249 54 1400 3955 386063918 386061370 0.000000e+00 2796.0
9 TraesCS6B01G242800 chr5D 86.465 2608 231 75 1417 3964 544156446 544158991 0.000000e+00 2748.0
10 TraesCS6B01G242800 chr5D 96.522 115 3 1 3965 4078 507218632 507218746 8.590000e-44 189.0
11 TraesCS6B01G242800 chr5D 90.099 101 8 2 5851 5950 416422369 416422270 5.280000e-26 130.0
12 TraesCS6B01G242800 chr5D 95.588 68 2 1 1303 1370 265370875 265370809 2.480000e-19 108.0
13 TraesCS6B01G242800 chr5D 89.474 57 3 3 1358 1412 255070150 255070095 1.170000e-07 69.4
14 TraesCS6B01G242800 chr2D 87.786 2620 214 57 1400 3964 632331955 632334523 0.000000e+00 2968.0
15 TraesCS6B01G242800 chr2D 89.893 1583 147 11 1400 2973 129945065 129943487 0.000000e+00 2025.0
16 TraesCS6B01G242800 chr2D 87.995 1466 136 21 2386 3812 618001743 618003207 0.000000e+00 1696.0
17 TraesCS6B01G242800 chr2D 87.237 1238 111 21 2614 3811 61331775 61330545 0.000000e+00 1367.0
18 TraesCS6B01G242800 chr2D 82.071 1400 210 28 2505 3889 632568696 632567323 0.000000e+00 1157.0
19 TraesCS6B01G242800 chr2D 96.491 114 4 0 3965 4078 58787143 58787030 8.590000e-44 189.0
20 TraesCS6B01G242800 chr2D 85.227 176 26 0 6219 6394 436366437 436366612 1.440000e-41 182.0
21 TraesCS6B01G242800 chr2D 91.000 100 8 1 5851 5950 636776252 636776350 4.080000e-27 134.0
22 TraesCS6B01G242800 chr2D 89.130 92 9 1 5860 5950 95416633 95416542 5.320000e-21 113.0
23 TraesCS6B01G242800 chr4D 87.415 2654 215 62 1371 3965 34653017 34655610 0.000000e+00 2940.0
24 TraesCS6B01G242800 chr4D 88.073 109 12 1 5843 5950 371791107 371790999 1.900000e-25 128.0
25 TraesCS6B01G242800 chr4D 95.588 68 2 1 1303 1370 194336350 194336284 2.480000e-19 108.0
26 TraesCS6B01G242800 chr4D 95.588 68 2 1 1303 1370 334733720 334733654 2.480000e-19 108.0
27 TraesCS6B01G242800 chr4D 85.870 92 13 0 5860 5951 110076187 110076278 1.490000e-16 99.0
28 TraesCS6B01G242800 chr4D 89.610 77 6 2 5849 5923 220347136 220347060 5.360000e-16 97.1
29 TraesCS6B01G242800 chr4D 95.238 42 2 0 1371 1412 35145236 35145195 4.200000e-07 67.6
30 TraesCS6B01G242800 chr6D 95.766 1795 37 19 4084 5856 271010391 271008614 0.000000e+00 2857.0
31 TraesCS6B01G242800 chr6D 95.238 693 19 7 632 1310 271011091 271010399 0.000000e+00 1085.0
32 TraesCS6B01G242800 chr6D 95.316 491 20 2 5947 6437 271008614 271008127 0.000000e+00 776.0
33 TraesCS6B01G242800 chr6D 92.222 90 6 1 5860 5948 155253513 155253602 6.830000e-25 126.0
34 TraesCS6B01G242800 chr6D 86.598 97 13 0 5855 5951 348637975 348638071 2.480000e-19 108.0
35 TraesCS6B01G242800 chr6D 91.892 74 4 2 5880 5951 59626187 59626114 1.150000e-17 102.0
36 TraesCS6B01G242800 chr6D 96.429 56 2 0 5895 5950 101231520 101231575 6.930000e-15 93.5
37 TraesCS6B01G242800 chr6D 94.737 57 2 1 5895 5950 14520569 14520513 3.230000e-13 87.9
38 TraesCS6B01G242800 chr6D 93.103 58 3 1 5895 5951 399221390 399221447 4.170000e-12 84.2
39 TraesCS6B01G242800 chr6D 85.714 77 7 4 5877 5951 81224712 81224786 1.940000e-10 78.7
40 TraesCS6B01G242800 chr6A 94.289 1856 55 27 4077 5893 384964703 384966546 0.000000e+00 2793.0
41 TraesCS6B01G242800 chr6A 95.736 516 16 4 5925 6437 384966548 384967060 0.000000e+00 826.0
42 TraesCS6B01G242800 chr6A 94.141 495 12 12 840 1324 384964224 384964711 0.000000e+00 737.0
43 TraesCS6B01G242800 chr6A 94.170 223 13 0 680 902 384960648 384960870 2.240000e-89 340.0
44 TraesCS6B01G242800 chr6A 93.496 123 6 2 3965 4086 276304271 276304150 1.440000e-41 182.0
45 TraesCS6B01G242800 chr6A 89.216 102 9 2 5852 5951 334045972 334046073 6.830000e-25 126.0
46 TraesCS6B01G242800 chr7D 86.358 2617 235 62 1406 3968 611465023 611467571 0.000000e+00 2743.0
47 TraesCS6B01G242800 chr7D 87.494 2191 189 37 1671 3805 473402215 473404376 0.000000e+00 2449.0
48 TraesCS6B01G242800 chr7D 84.964 552 60 17 3426 3964 567480349 567480890 7.410000e-149 538.0
49 TraesCS6B01G242800 chr7D 84.539 304 31 10 3668 3964 185745808 185746102 2.960000e-73 287.0
50 TraesCS6B01G242800 chr7D 93.617 188 12 0 3777 3964 625105369 625105556 1.380000e-71 281.0
51 TraesCS6B01G242800 chr7D 94.828 116 6 0 3965 4080 146623842 146623727 1.440000e-41 182.0
52 TraesCS6B01G242800 chr7D 87.629 97 10 2 5855 5950 424130308 424130403 1.910000e-20 111.0
53 TraesCS6B01G242800 chr4B 87.582 2134 198 21 1723 3815 190171333 190173440 0.000000e+00 2410.0
54 TraesCS6B01G242800 chr1D 88.571 1995 173 32 1371 3327 475846846 475848823 0.000000e+00 2370.0
55 TraesCS6B01G242800 chr1D 85.747 2196 230 39 1678 3811 253098707 253100881 0.000000e+00 2244.0
56 TraesCS6B01G242800 chr1D 90.202 1582 136 13 1400 2972 282974723 282973152 0.000000e+00 2045.0
57 TraesCS6B01G242800 chr1D 92.708 96 6 1 5855 5949 332956432 332956527 3.160000e-28 137.0
58 TraesCS6B01G242800 chr1D 87.500 96 12 0 5855 5950 414709692 414709787 1.910000e-20 111.0
59 TraesCS6B01G242800 chr1D 95.588 68 2 1 1303 1370 197452393 197452459 2.480000e-19 108.0
60 TraesCS6B01G242800 chr1D 95.588 68 2 1 1303 1370 233058007 233057941 2.480000e-19 108.0
61 TraesCS6B01G242800 chr1D 95.588 68 2 1 1303 1370 253736466 253736400 2.480000e-19 108.0
62 TraesCS6B01G242800 chr1D 95.588 68 2 1 1303 1370 401232281 401232215 2.480000e-19 108.0
63 TraesCS6B01G242800 chr1D 84.848 99 15 0 5855 5953 3184702 3184604 4.140000e-17 100.0
64 TraesCS6B01G242800 chr1D 89.655 58 5 1 5895 5951 192809974 192809917 9.030000e-09 73.1
65 TraesCS6B01G242800 chr1D 89.655 58 4 2 5895 5951 301636419 301636363 9.030000e-09 73.1
66 TraesCS6B01G242800 chr1D 89.655 58 5 1 5895 5951 407351123 407351180 9.030000e-09 73.1
67 TraesCS6B01G242800 chr1D 89.474 57 5 1 5895 5950 47310388 47310444 3.250000e-08 71.3
68 TraesCS6B01G242800 chr1D 97.619 42 0 1 5895 5935 479208754 479208795 3.250000e-08 71.3
69 TraesCS6B01G242800 chr1D 84.722 72 6 5 5895 5964 27855843 27855775 4.200000e-07 67.6
70 TraesCS6B01G242800 chr1D 87.931 58 6 1 5894 5950 318847084 318847141 4.200000e-07 67.6
71 TraesCS6B01G242800 chr1B 86.152 2217 211 42 1671 3811 689802446 689800250 0.000000e+00 2305.0
72 TraesCS6B01G242800 chr1B 85.994 2199 209 41 1700 3811 689678794 689676608 0.000000e+00 2263.0
73 TraesCS6B01G242800 chr1B 90.528 644 53 8 1 639 527383741 527384381 0.000000e+00 845.0
74 TraesCS6B01G242800 chr1B 97.345 113 3 0 3965 4077 500967954 500968066 6.640000e-45 193.0
75 TraesCS6B01G242800 chr1B 89.091 110 8 4 5844 5951 24936298 24936405 4.080000e-27 134.0
76 TraesCS6B01G242800 chr7A 85.961 2201 228 51 1671 3815 636258030 636260205 0.000000e+00 2278.0
77 TraesCS6B01G242800 chr7A 89.320 103 9 2 5850 5951 112799859 112799758 1.900000e-25 128.0
78 TraesCS6B01G242800 chr7A 88.350 103 10 2 5850 5951 112776978 112776877 8.840000e-24 122.0
79 TraesCS6B01G242800 chr7B 81.584 2601 360 66 1412 3964 46799759 46802288 0.000000e+00 2039.0
80 TraesCS6B01G242800 chr7B 91.366 637 52 3 1 635 608944574 608945209 0.000000e+00 869.0
81 TraesCS6B01G242800 chr7B 100.000 38 0 0 1371 1408 597297379 597297416 3.250000e-08 71.3
82 TraesCS6B01G242800 chr7B 97.500 40 1 0 1371 1410 651280333 651280294 1.170000e-07 69.4
83 TraesCS6B01G242800 chr7B 97.500 40 1 0 1371 1410 651308150 651308111 1.170000e-07 69.4
84 TraesCS6B01G242800 chr3D 87.646 1457 136 26 2389 3805 439827624 439826172 0.000000e+00 1653.0
85 TraesCS6B01G242800 chr3D 88.119 101 11 1 5851 5950 126955215 126955115 1.140000e-22 119.0
86 TraesCS6B01G242800 chr3D 95.588 68 2 1 1303 1370 212939684 212939750 2.480000e-19 108.0
87 TraesCS6B01G242800 chr3B 92.163 638 44 4 1 633 154436114 154436750 0.000000e+00 896.0
88 TraesCS6B01G242800 chr3B 91.798 634 48 4 1 631 692131845 692131213 0.000000e+00 880.0
89 TraesCS6B01G242800 chr3B 91.693 638 46 6 1 633 659291898 659291263 0.000000e+00 878.0
90 TraesCS6B01G242800 chr3B 97.500 40 1 0 1370 1409 95850326 95850365 1.170000e-07 69.4
91 TraesCS6B01G242800 chr3B 95.000 40 1 1 1371 1409 4416977 4417016 1.950000e-05 62.1
92 TraesCS6B01G242800 chr3B 93.023 43 2 1 1371 1412 145415245 145415203 1.950000e-05 62.1
93 TraesCS6B01G242800 chr4A 86.896 786 82 15 3191 3964 40732958 40732182 0.000000e+00 861.0
94 TraesCS6B01G242800 chr4A 97.297 111 3 0 3965 4075 601248747 601248857 8.590000e-44 189.0
95 TraesCS6B01G242800 chr5B 90.469 640 53 7 1 633 281672300 281671662 0.000000e+00 837.0
96 TraesCS6B01G242800 chr2A 96.689 151 5 0 3812 3962 515938266 515938416 1.080000e-62 252.0
97 TraesCS6B01G242800 chr2A 89.894 188 17 2 3777 3964 764570682 764570867 2.340000e-59 241.0
98 TraesCS6B01G242800 chr2A 97.059 68 1 1 1303 1370 59453094 59453028 5.320000e-21 113.0
99 TraesCS6B01G242800 chr2B 96.491 114 4 0 3965 4078 390801934 390802047 8.590000e-44 189.0
100 TraesCS6B01G242800 chr1A 92.742 124 8 1 3965 4087 33408386 33408509 1.860000e-40 178.0
101 TraesCS6B01G242800 chr1A 87.850 107 10 3 5847 5950 520805651 520805757 8.840000e-24 122.0
102 TraesCS6B01G242800 chrUn 86.139 101 13 1 5851 5950 100236600 100236700 2.480000e-19 108.0
103 TraesCS6B01G242800 chrUn 97.561 41 0 1 1370 1409 36758994 36759034 1.170000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G242800 chr6B 431702743 431709235 6492 True 6153.500000 11991 97.525 1 6493 2 chr6B.!!$R4 6492
1 TraesCS6B01G242800 chr6B 705433800 705434417 617 True 898.000000 898 92.800 12 635 1 chr6B.!!$R3 623
2 TraesCS6B01G242800 chr6B 91205249 91205884 635 True 891.000000 891 91.994 1 635 1 chr6B.!!$R1 634
3 TraesCS6B01G242800 chr6B 604112678 604113322 644 False 865.000000 865 91.036 1 639 1 chr6B.!!$F2 638
4 TraesCS6B01G242800 chr6B 89423211 89423813 602 False 449.000000 449 80.465 3325 3964 1 chr6B.!!$F1 639
5 TraesCS6B01G242800 chr5D 554157409 554160019 2610 False 3024.000000 3024 87.863 1371 3965 1 chr5D.!!$F3 2594
6 TraesCS6B01G242800 chr5D 386061370 386063918 2548 True 2796.000000 2796 86.697 1400 3955 1 chr5D.!!$R3 2555
7 TraesCS6B01G242800 chr5D 544156446 544158991 2545 False 2748.000000 2748 86.465 1417 3964 1 chr5D.!!$F2 2547
8 TraesCS6B01G242800 chr2D 632331955 632334523 2568 False 2968.000000 2968 87.786 1400 3964 1 chr2D.!!$F3 2564
9 TraesCS6B01G242800 chr2D 129943487 129945065 1578 True 2025.000000 2025 89.893 1400 2973 1 chr2D.!!$R4 1573
10 TraesCS6B01G242800 chr2D 618001743 618003207 1464 False 1696.000000 1696 87.995 2386 3812 1 chr2D.!!$F2 1426
11 TraesCS6B01G242800 chr2D 61330545 61331775 1230 True 1367.000000 1367 87.237 2614 3811 1 chr2D.!!$R2 1197
12 TraesCS6B01G242800 chr2D 632567323 632568696 1373 True 1157.000000 1157 82.071 2505 3889 1 chr2D.!!$R5 1384
13 TraesCS6B01G242800 chr4D 34653017 34655610 2593 False 2940.000000 2940 87.415 1371 3965 1 chr4D.!!$F1 2594
14 TraesCS6B01G242800 chr6D 271008127 271011091 2964 True 1572.666667 2857 95.440 632 6437 3 chr6D.!!$R3 5805
15 TraesCS6B01G242800 chr6A 384960648 384967060 6412 False 1174.000000 2793 94.584 680 6437 4 chr6A.!!$F2 5757
16 TraesCS6B01G242800 chr7D 611465023 611467571 2548 False 2743.000000 2743 86.358 1406 3968 1 chr7D.!!$F5 2562
17 TraesCS6B01G242800 chr7D 473402215 473404376 2161 False 2449.000000 2449 87.494 1671 3805 1 chr7D.!!$F3 2134
18 TraesCS6B01G242800 chr7D 567480349 567480890 541 False 538.000000 538 84.964 3426 3964 1 chr7D.!!$F4 538
19 TraesCS6B01G242800 chr4B 190171333 190173440 2107 False 2410.000000 2410 87.582 1723 3815 1 chr4B.!!$F1 2092
20 TraesCS6B01G242800 chr1D 475846846 475848823 1977 False 2370.000000 2370 88.571 1371 3327 1 chr1D.!!$F8 1956
21 TraesCS6B01G242800 chr1D 253098707 253100881 2174 False 2244.000000 2244 85.747 1678 3811 1 chr1D.!!$F3 2133
22 TraesCS6B01G242800 chr1D 282973152 282974723 1571 True 2045.000000 2045 90.202 1400 2972 1 chr1D.!!$R6 1572
23 TraesCS6B01G242800 chr1B 689800250 689802446 2196 True 2305.000000 2305 86.152 1671 3811 1 chr1B.!!$R2 2140
24 TraesCS6B01G242800 chr1B 689676608 689678794 2186 True 2263.000000 2263 85.994 1700 3811 1 chr1B.!!$R1 2111
25 TraesCS6B01G242800 chr1B 527383741 527384381 640 False 845.000000 845 90.528 1 639 1 chr1B.!!$F3 638
26 TraesCS6B01G242800 chr7A 636258030 636260205 2175 False 2278.000000 2278 85.961 1671 3815 1 chr7A.!!$F1 2144
27 TraesCS6B01G242800 chr7B 46799759 46802288 2529 False 2039.000000 2039 81.584 1412 3964 1 chr7B.!!$F1 2552
28 TraesCS6B01G242800 chr7B 608944574 608945209 635 False 869.000000 869 91.366 1 635 1 chr7B.!!$F3 634
29 TraesCS6B01G242800 chr3D 439826172 439827624 1452 True 1653.000000 1653 87.646 2389 3805 1 chr3D.!!$R2 1416
30 TraesCS6B01G242800 chr3B 154436114 154436750 636 False 896.000000 896 92.163 1 633 1 chr3B.!!$F3 632
31 TraesCS6B01G242800 chr3B 692131213 692131845 632 True 880.000000 880 91.798 1 631 1 chr3B.!!$R3 630
32 TraesCS6B01G242800 chr3B 659291263 659291898 635 True 878.000000 878 91.693 1 633 1 chr3B.!!$R2 632
33 TraesCS6B01G242800 chr4A 40732182 40732958 776 True 861.000000 861 86.896 3191 3964 1 chr4A.!!$R1 773
34 TraesCS6B01G242800 chr5B 281671662 281672300 638 True 837.000000 837 90.469 1 633 1 chr5B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 1.594293 CGAACCACCGTGCTTCAGT 60.594 57.895 7.24 0.0 0.00 3.41 F
1637 5099 0.747255 GGAGAGAATAGCAGCCGACA 59.253 55.000 0.00 0.0 0.00 4.35 F
1793 5259 0.980754 ATATGGTGGTGGAGCCGTGA 60.981 55.000 0.00 0.0 41.21 4.35 F
2045 5581 1.074319 GCATGCGTAGACGGACGAAA 61.074 55.000 0.00 0.0 45.82 3.46 F
3175 6784 1.272769 GAGTTGAGGTAGCCGACAAGT 59.727 52.381 0.00 0.0 33.79 3.16 F
4349 10546 0.308993 AAGCTGAGCGTTTTCTGTGC 59.691 50.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 5177 1.372997 GCTTGAGCAACTCGTCGGA 60.373 57.895 0.00 0.0 41.59 4.55 R
3562 9740 0.541392 CCCACCGGTCATCTTGATCA 59.459 55.000 2.59 0.0 0.00 2.92 R
3737 9920 0.693092 ATCCTAAACCCTAGCCGCCA 60.693 55.000 0.00 0.0 0.00 5.69 R
3966 10156 3.149196 AGATTCACACATTTTGCTCCGT 58.851 40.909 0.00 0.0 0.00 4.69 R
4361 10558 0.811915 ATGTCGTCCTCGTCCTTCAG 59.188 55.000 0.00 0.0 38.33 3.02 R
5934 12174 0.106167 CAGATACTCCCTCGGTCCCA 60.106 60.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.594293 CGAACCACCGTGCTTCAGT 60.594 57.895 7.24 0.00 0.00 3.41
65 66 4.263018 TGATGTGCATAGCTAGGATCAC 57.737 45.455 10.11 9.21 0.00 3.06
381 390 3.259930 CGGTCGCCGGAAAAATGT 58.740 55.556 5.05 0.00 44.15 2.71
660 679 5.240403 GCAAGAGATCAACCTTTTCTTCTGT 59.760 40.000 0.00 0.00 0.00 3.41
705 728 5.128919 CCTGTTCATAAAATGAGGGAGAGG 58.871 45.833 0.00 0.00 40.94 3.69
710 733 2.521547 AAAATGAGGGAGAGGCAAGG 57.478 50.000 0.00 0.00 0.00 3.61
734 757 3.188460 CGTCAATGTACAAACTGGAAGGG 59.812 47.826 0.00 0.00 39.30 3.95
756 779 2.025584 CTAGCGCGACGTGGCATA 59.974 61.111 22.58 12.90 0.00 3.14
885 4324 2.025418 CGGCCCACGTGTCAGTAAC 61.025 63.158 15.65 0.00 37.93 2.50
932 4389 1.616374 AGCTAGCTATCTTTCCCTCGC 59.384 52.381 17.69 0.00 0.00 5.03
990 4447 3.966218 GGACAATCACAGAAAACGAAACG 59.034 43.478 0.00 0.00 0.00 3.60
1317 4779 6.158175 CGTATGTACGTATGTAGTACTCCC 57.842 45.833 0.00 0.00 43.41 4.30
1318 4780 5.928839 CGTATGTACGTATGTAGTACTCCCT 59.071 44.000 0.00 0.00 43.41 4.20
1319 4781 6.425114 CGTATGTACGTATGTAGTACTCCCTT 59.575 42.308 0.00 0.00 43.41 3.95
1320 4782 6.874288 ATGTACGTATGTAGTACTCCCTTC 57.126 41.667 0.00 0.00 43.41 3.46
1321 4783 4.811024 TGTACGTATGTAGTACTCCCTTCG 59.189 45.833 0.00 3.46 43.41 3.79
1322 4784 3.878778 ACGTATGTAGTACTCCCTTCGT 58.121 45.455 0.00 4.12 0.00 3.85
1323 4785 4.265073 ACGTATGTAGTACTCCCTTCGTT 58.735 43.478 0.00 0.00 0.00 3.85
1324 4786 4.333926 ACGTATGTAGTACTCCCTTCGTTC 59.666 45.833 0.00 0.00 0.00 3.95
1325 4787 4.260948 CGTATGTAGTACTCCCTTCGTTCC 60.261 50.000 0.00 0.00 0.00 3.62
1326 4788 3.446442 TGTAGTACTCCCTTCGTTCCT 57.554 47.619 0.00 0.00 0.00 3.36
1327 4789 4.574674 TGTAGTACTCCCTTCGTTCCTA 57.425 45.455 0.00 0.00 0.00 2.94
1328 4790 4.922206 TGTAGTACTCCCTTCGTTCCTAA 58.078 43.478 0.00 0.00 0.00 2.69
1329 4791 5.324409 TGTAGTACTCCCTTCGTTCCTAAA 58.676 41.667 0.00 0.00 0.00 1.85
1330 4792 5.954150 TGTAGTACTCCCTTCGTTCCTAAAT 59.046 40.000 0.00 0.00 0.00 1.40
1331 4793 7.118723 TGTAGTACTCCCTTCGTTCCTAAATA 58.881 38.462 0.00 0.00 0.00 1.40
1332 4794 7.781693 TGTAGTACTCCCTTCGTTCCTAAATAT 59.218 37.037 0.00 0.00 0.00 1.28
1333 4795 7.672122 AGTACTCCCTTCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
1334 4796 8.087303 AGTACTCCCTTCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
1335 4797 7.985752 AGTACTCCCTTCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
1336 4798 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
1337 4799 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
1338 4800 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
1339 4801 6.821665 TCCCTTCGTTCCTAAATATTTGTCTG 59.178 38.462 11.05 0.00 0.00 3.51
1340 4802 6.598064 CCCTTCGTTCCTAAATATTTGTCTGT 59.402 38.462 11.05 0.00 0.00 3.41
1341 4803 7.201617 CCCTTCGTTCCTAAATATTTGTCTGTC 60.202 40.741 11.05 0.00 0.00 3.51
1342 4804 7.549488 CCTTCGTTCCTAAATATTTGTCTGTCT 59.451 37.037 11.05 0.00 0.00 3.41
1343 4805 9.582431 CTTCGTTCCTAAATATTTGTCTGTCTA 57.418 33.333 11.05 0.00 0.00 2.59
1344 4806 9.582431 TTCGTTCCTAAATATTTGTCTGTCTAG 57.418 33.333 11.05 0.00 0.00 2.43
1345 4807 8.963725 TCGTTCCTAAATATTTGTCTGTCTAGA 58.036 33.333 11.05 0.00 0.00 2.43
1346 4808 9.239002 CGTTCCTAAATATTTGTCTGTCTAGAG 57.761 37.037 11.05 0.00 32.48 2.43
1354 4816 8.885494 ATATTTGTCTGTCTAGAGATTTCAGC 57.115 34.615 0.00 0.00 32.48 4.26
1355 4817 5.728637 TTGTCTGTCTAGAGATTTCAGCA 57.271 39.130 0.00 0.00 32.48 4.41
1356 4818 5.728637 TGTCTGTCTAGAGATTTCAGCAA 57.271 39.130 0.00 0.00 32.48 3.91
1357 4819 5.718146 TGTCTGTCTAGAGATTTCAGCAAG 58.282 41.667 0.00 0.00 32.48 4.01
1358 4820 5.244851 TGTCTGTCTAGAGATTTCAGCAAGT 59.755 40.000 0.00 0.00 32.48 3.16
1359 4821 5.576384 GTCTGTCTAGAGATTTCAGCAAGTG 59.424 44.000 0.00 0.00 32.48 3.16
1360 4822 5.478332 TCTGTCTAGAGATTTCAGCAAGTGA 59.522 40.000 0.00 0.00 0.00 3.41
1361 4823 5.473931 TGTCTAGAGATTTCAGCAAGTGAC 58.526 41.667 0.00 0.00 33.71 3.67
1362 4824 5.244851 TGTCTAGAGATTTCAGCAAGTGACT 59.755 40.000 0.00 0.00 33.71 3.41
1363 4825 6.434340 TGTCTAGAGATTTCAGCAAGTGACTA 59.566 38.462 0.00 0.00 33.71 2.59
1364 4826 6.750039 GTCTAGAGATTTCAGCAAGTGACTAC 59.250 42.308 0.00 0.00 33.71 2.73
1365 4827 5.474578 AGAGATTTCAGCAAGTGACTACA 57.525 39.130 0.00 0.00 33.71 2.74
1366 4828 6.047511 AGAGATTTCAGCAAGTGACTACAT 57.952 37.500 0.00 0.00 33.71 2.29
1367 4829 7.175347 AGAGATTTCAGCAAGTGACTACATA 57.825 36.000 0.00 0.00 33.71 2.29
1368 4830 7.038659 AGAGATTTCAGCAAGTGACTACATAC 58.961 38.462 0.00 0.00 33.71 2.39
1369 4831 5.807520 AGATTTCAGCAAGTGACTACATACG 59.192 40.000 0.00 0.00 33.71 3.06
1414 4876 8.091449 GGTTTGGTGGAATTGTTGTTGAATATA 58.909 33.333 0.00 0.00 0.00 0.86
1458 4920 6.354938 TCGAGGGCGAGTATATATTGAGTAT 58.645 40.000 0.00 0.00 42.51 2.12
1563 5025 7.263901 TCCCAAATATATCTCTAACATCCCCT 58.736 38.462 0.00 0.00 0.00 4.79
1637 5099 0.747255 GGAGAGAATAGCAGCCGACA 59.253 55.000 0.00 0.00 0.00 4.35
1714 5177 1.736032 GCGCGTTGACTGTAGAGGAAT 60.736 52.381 8.43 0.00 0.00 3.01
1793 5259 0.980754 ATATGGTGGTGGAGCCGTGA 60.981 55.000 0.00 0.00 41.21 4.35
1841 5337 1.676635 TCGATGTCGAGTCGGGGTT 60.677 57.895 13.54 0.00 44.22 4.11
2045 5581 1.074319 GCATGCGTAGACGGACGAAA 61.074 55.000 0.00 0.00 45.82 3.46
2047 5583 1.722464 CATGCGTAGACGGACGAAAAA 59.278 47.619 10.44 0.00 45.82 1.94
2147 5684 2.805546 GGCATGCGTAGACGAGGA 59.194 61.111 12.44 0.00 43.02 3.71
2392 5938 1.667830 CAAAGAAGAGTGGCGGCGA 60.668 57.895 12.98 0.00 0.00 5.54
2756 6329 2.127003 TATCGCGATGCTACGGCG 60.127 61.111 31.05 4.80 42.25 6.46
2793 6366 2.047274 CAAGGCACGGGTCGATGT 60.047 61.111 0.00 0.00 0.00 3.06
3175 6784 1.272769 GAGTTGAGGTAGCCGACAAGT 59.727 52.381 0.00 0.00 33.79 3.16
3538 9714 3.252458 ACGCAAACCCAACAAGAATAGAC 59.748 43.478 0.00 0.00 0.00 2.59
3553 9729 8.201464 ACAAGAATAGACCGAAAAACCAAAAAT 58.799 29.630 0.00 0.00 0.00 1.82
3561 9739 4.270325 CCGAAAAACCAAAAATAAACCGCA 59.730 37.500 0.00 0.00 0.00 5.69
3562 9740 5.050023 CCGAAAAACCAAAAATAAACCGCAT 60.050 36.000 0.00 0.00 0.00 4.73
3578 9758 1.807755 CGCATGATCAAGATGACCGGT 60.808 52.381 6.92 6.92 0.00 5.28
3764 9954 4.324331 GGCTAGGGTTTAGGATCAACTTGT 60.324 45.833 0.00 0.00 0.00 3.16
3812 10002 4.956075 AGAGAGGTTTGGTGAAATTGTTGT 59.044 37.500 0.00 0.00 0.00 3.32
3819 10009 8.210265 AGGTTTGGTGAAATTGTTGTTGAATAT 58.790 29.630 0.00 0.00 0.00 1.28
3820 10010 9.482627 GGTTTGGTGAAATTGTTGTTGAATATA 57.517 29.630 0.00 0.00 0.00 0.86
3906 10096 4.020039 CGCCTCTCCTAGAGATAAGGTAGA 60.020 50.000 5.50 0.00 45.07 2.59
3911 10101 6.761312 TCTCCTAGAGATAAGGTAGAAGACG 58.239 44.000 0.00 0.00 33.35 4.18
3932 10122 6.264970 AGACGGATTACAAATCCTAGACTACC 59.735 42.308 14.93 0.00 36.07 3.18
3937 10127 9.628500 GGATTACAAATCCTAGACTACCAAATT 57.372 33.333 10.76 0.00 35.36 1.82
3970 10160 9.316594 TCCCAAATATATCTCTAACAATACGGA 57.683 33.333 0.00 0.00 0.00 4.69
3971 10161 9.587772 CCCAAATATATCTCTAACAATACGGAG 57.412 37.037 0.00 0.00 0.00 4.63
3972 10162 9.088512 CCAAATATATCTCTAACAATACGGAGC 57.911 37.037 0.00 0.00 0.00 4.70
3973 10163 9.639601 CAAATATATCTCTAACAATACGGAGCA 57.360 33.333 0.00 0.00 0.00 4.26
3978 10168 6.662414 TCTCTAACAATACGGAGCAAAATG 57.338 37.500 0.00 0.00 0.00 2.32
3979 10169 6.170506 TCTCTAACAATACGGAGCAAAATGT 58.829 36.000 0.00 0.00 0.00 2.71
3980 10170 6.092122 TCTCTAACAATACGGAGCAAAATGTG 59.908 38.462 0.00 0.00 0.00 3.21
3981 10171 4.846779 AACAATACGGAGCAAAATGTGT 57.153 36.364 0.00 0.00 0.00 3.72
3982 10172 4.159377 ACAATACGGAGCAAAATGTGTG 57.841 40.909 0.00 0.00 0.00 3.82
3983 10173 3.818210 ACAATACGGAGCAAAATGTGTGA 59.182 39.130 0.00 0.00 0.00 3.58
3984 10174 4.277174 ACAATACGGAGCAAAATGTGTGAA 59.723 37.500 0.00 0.00 0.00 3.18
3985 10175 5.048083 ACAATACGGAGCAAAATGTGTGAAT 60.048 36.000 0.00 0.00 0.00 2.57
3986 10176 3.559238 ACGGAGCAAAATGTGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
3987 10177 3.149196 ACGGAGCAAAATGTGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
3988 10178 4.323417 ACGGAGCAAAATGTGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
3989 10179 4.393062 ACGGAGCAAAATGTGTGAATCTAG 59.607 41.667 0.00 0.00 0.00 2.43
3990 10180 4.631377 CGGAGCAAAATGTGTGAATCTAGA 59.369 41.667 0.00 0.00 0.00 2.43
3991 10181 5.446473 CGGAGCAAAATGTGTGAATCTAGAC 60.446 44.000 0.00 0.00 0.00 2.59
3992 10182 5.645497 GGAGCAAAATGTGTGAATCTAGACT 59.355 40.000 0.00 0.00 0.00 3.24
3993 10183 6.183360 GGAGCAAAATGTGTGAATCTAGACTC 60.183 42.308 0.00 0.00 0.00 3.36
3994 10184 6.471146 AGCAAAATGTGTGAATCTAGACTCT 58.529 36.000 2.46 0.00 0.00 3.24
3995 10185 7.615403 AGCAAAATGTGTGAATCTAGACTCTA 58.385 34.615 2.46 0.00 0.00 2.43
3996 10186 8.097038 AGCAAAATGTGTGAATCTAGACTCTAA 58.903 33.333 2.46 0.00 0.00 2.10
3997 10187 8.721478 GCAAAATGTGTGAATCTAGACTCTAAA 58.279 33.333 2.46 0.00 0.00 1.85
4028 10218 9.565213 GTCTATATACATTCGTATGTGGTAACC 57.435 37.037 16.91 0.00 44.56 2.85
4029 10219 9.299465 TCTATATACATTCGTATGTGGTAACCA 57.701 33.333 16.91 0.00 44.56 3.67
4032 10222 9.787435 ATATACATTCGTATGTGGTAACCATTT 57.213 29.630 16.91 0.00 44.56 2.32
4033 10223 6.189677 ACATTCGTATGTGGTAACCATTTG 57.810 37.500 6.89 0.00 43.29 2.32
4034 10224 5.941058 ACATTCGTATGTGGTAACCATTTGA 59.059 36.000 6.89 0.00 43.29 2.69
4035 10225 6.431543 ACATTCGTATGTGGTAACCATTTGAA 59.568 34.615 6.89 0.00 43.29 2.69
4036 10226 6.879276 TTCGTATGTGGTAACCATTTGAAA 57.121 33.333 0.00 0.00 35.28 2.69
4037 10227 7.455641 TTCGTATGTGGTAACCATTTGAAAT 57.544 32.000 0.00 0.00 35.28 2.17
4038 10228 7.079182 TCGTATGTGGTAACCATTTGAAATC 57.921 36.000 0.00 0.00 35.28 2.17
4039 10229 6.882140 TCGTATGTGGTAACCATTTGAAATCT 59.118 34.615 0.00 0.00 35.28 2.40
4040 10230 7.065324 TCGTATGTGGTAACCATTTGAAATCTC 59.935 37.037 0.00 0.00 35.28 2.75
4041 10231 7.065803 CGTATGTGGTAACCATTTGAAATCTCT 59.934 37.037 0.00 0.00 35.28 3.10
4042 10232 9.391006 GTATGTGGTAACCATTTGAAATCTCTA 57.609 33.333 0.00 0.00 35.28 2.43
4043 10233 8.877864 ATGTGGTAACCATTTGAAATCTCTAA 57.122 30.769 0.00 0.00 35.28 2.10
4044 10234 8.698973 TGTGGTAACCATTTGAAATCTCTAAA 57.301 30.769 0.00 0.00 35.28 1.85
4045 10235 9.137459 TGTGGTAACCATTTGAAATCTCTAAAA 57.863 29.630 0.00 0.00 35.28 1.52
4046 10236 9.974980 GTGGTAACCATTTGAAATCTCTAAAAA 57.025 29.630 0.00 0.00 35.28 1.94
4068 10258 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
4069 10259 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4070 10260 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4071 10261 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4072 10262 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4073 10263 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4074 10264 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
4075 10265 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
4086 10276 4.344102 CGGAGGGAGTATATTCCTTGTTGA 59.656 45.833 13.49 0.00 37.40 3.18
4103 10293 3.565482 TGTTGATGAGTCAAGAAAGCCAC 59.435 43.478 0.00 0.00 44.58 5.01
4344 10541 2.159960 CGTGTAGAAGCTGAGCGTTTTC 60.160 50.000 0.00 0.00 0.00 2.29
4349 10546 0.308993 AAGCTGAGCGTTTTCTGTGC 59.691 50.000 0.00 0.00 0.00 4.57
4361 10558 4.000557 CTGTGCGTGCGTGGTGTC 62.001 66.667 0.00 0.00 0.00 3.67
4473 10670 4.455606 GTGGTAATTCTCTCATCCTTGGG 58.544 47.826 0.00 0.00 0.00 4.12
4557 10763 4.588106 TCAAAGATCAAAATGGAGGTTGCA 59.412 37.500 0.00 0.00 0.00 4.08
4648 10854 1.066136 GTGCTCGAGGTACGTTTTCC 58.934 55.000 15.58 0.00 43.13 3.13
4727 10933 2.743664 GCTTTGATTTTGCCAACCCATC 59.256 45.455 0.00 0.00 0.00 3.51
4731 10937 2.971330 TGATTTTGCCAACCCATCTGTT 59.029 40.909 0.00 0.00 0.00 3.16
4732 10938 4.155709 TGATTTTGCCAACCCATCTGTTA 58.844 39.130 0.00 0.00 0.00 2.41
4733 10939 4.021544 TGATTTTGCCAACCCATCTGTTAC 60.022 41.667 0.00 0.00 0.00 2.50
4746 10954 5.639082 CCCATCTGTTACTTTTTGGCAAATC 59.361 40.000 14.29 1.91 0.00 2.17
4778 10989 3.016031 TCTATTCCAAATGCATGCGTGT 58.984 40.909 14.40 4.56 0.00 4.49
4900 11115 9.042008 GGTAAATATGTGATATGAAACGACACT 57.958 33.333 0.00 0.00 33.41 3.55
4923 11138 3.045634 CAGATATAGAACCCCACCACCA 58.954 50.000 0.00 0.00 0.00 4.17
4960 11184 4.680171 AAGCTCGCCATGTTTTTACTAC 57.320 40.909 0.00 0.00 0.00 2.73
4998 11222 2.807108 GCTCCCCCTTGCTATCTAAACG 60.807 54.545 0.00 0.00 0.00 3.60
4999 11223 2.698797 CTCCCCCTTGCTATCTAAACGA 59.301 50.000 0.00 0.00 0.00 3.85
5000 11224 2.698797 TCCCCCTTGCTATCTAAACGAG 59.301 50.000 0.00 0.00 0.00 4.18
5079 11303 2.493414 ATTGCAGAAGAGCTCAGCTT 57.507 45.000 17.77 0.63 39.88 3.74
5204 11428 5.747951 AGAAAGAAGAGCTCAAAAGTGTG 57.252 39.130 17.77 0.00 0.00 3.82
5322 11546 2.033801 GCAGAAGCAAAAGCAGAAGACA 59.966 45.455 0.00 0.00 41.58 3.41
5401 11625 5.491982 CAAGCAAGGGTTCAGTAAGTAGAT 58.508 41.667 0.00 0.00 0.00 1.98
5403 11627 6.869206 AGCAAGGGTTCAGTAAGTAGATAA 57.131 37.500 0.00 0.00 0.00 1.75
5508 11746 1.745141 GCTGATTGGAAGCGTGGATCT 60.745 52.381 0.00 0.00 0.00 2.75
5511 11749 2.027285 TGATTGGAAGCGTGGATCTCAA 60.027 45.455 0.00 0.00 0.00 3.02
5728 11967 9.661187 GAAGATCACAGCTGTATATTGAATTTG 57.339 33.333 21.20 2.36 0.00 2.32
5860 12100 9.944376 TGGAAATCATTGCTATATACTACTTCC 57.056 33.333 0.00 0.00 0.00 3.46
5865 12105 8.941995 TCATTGCTATATACTACTTCCTCTGT 57.058 34.615 0.00 0.00 0.00 3.41
5866 12106 9.015367 TCATTGCTATATACTACTTCCTCTGTC 57.985 37.037 0.00 0.00 0.00 3.51
5867 12107 7.762588 TTGCTATATACTACTTCCTCTGTCC 57.237 40.000 0.00 0.00 0.00 4.02
5868 12108 6.246919 TGCTATATACTACTTCCTCTGTCCC 58.753 44.000 0.00 0.00 0.00 4.46
5869 12109 6.183361 TGCTATATACTACTTCCTCTGTCCCA 60.183 42.308 0.00 0.00 0.00 4.37
5870 12110 6.720288 GCTATATACTACTTCCTCTGTCCCAA 59.280 42.308 0.00 0.00 0.00 4.12
5871 12111 7.232941 GCTATATACTACTTCCTCTGTCCCAAA 59.767 40.741 0.00 0.00 0.00 3.28
5872 12112 7.989947 ATATACTACTTCCTCTGTCCCAAAA 57.010 36.000 0.00 0.00 0.00 2.44
5873 12113 6.893020 ATACTACTTCCTCTGTCCCAAAAT 57.107 37.500 0.00 0.00 0.00 1.82
5874 12114 7.989947 ATACTACTTCCTCTGTCCCAAAATA 57.010 36.000 0.00 0.00 0.00 1.40
5875 12115 6.697641 ACTACTTCCTCTGTCCCAAAATAA 57.302 37.500 0.00 0.00 0.00 1.40
5876 12116 6.712276 ACTACTTCCTCTGTCCCAAAATAAG 58.288 40.000 0.00 0.00 0.00 1.73
5877 12117 5.584551 ACTTCCTCTGTCCCAAAATAAGT 57.415 39.130 0.00 0.00 0.00 2.24
5878 12118 6.697641 ACTTCCTCTGTCCCAAAATAAGTA 57.302 37.500 0.00 0.00 0.00 2.24
5879 12119 7.272144 ACTTCCTCTGTCCCAAAATAAGTAT 57.728 36.000 0.00 0.00 0.00 2.12
5880 12120 7.339482 ACTTCCTCTGTCCCAAAATAAGTATC 58.661 38.462 0.00 0.00 0.00 2.24
5881 12121 7.182930 ACTTCCTCTGTCCCAAAATAAGTATCT 59.817 37.037 0.00 0.00 0.00 1.98
5882 12122 7.125792 TCCTCTGTCCCAAAATAAGTATCTC 57.874 40.000 0.00 0.00 0.00 2.75
5883 12123 6.672218 TCCTCTGTCCCAAAATAAGTATCTCA 59.328 38.462 0.00 0.00 0.00 3.27
5884 12124 7.182026 TCCTCTGTCCCAAAATAAGTATCTCAA 59.818 37.037 0.00 0.00 0.00 3.02
5885 12125 7.281100 CCTCTGTCCCAAAATAAGTATCTCAAC 59.719 40.741 0.00 0.00 0.00 3.18
5886 12126 7.918076 TCTGTCCCAAAATAAGTATCTCAACT 58.082 34.615 0.00 0.00 0.00 3.16
5887 12127 8.383175 TCTGTCCCAAAATAAGTATCTCAACTT 58.617 33.333 0.00 0.00 42.31 2.66
5888 12128 8.934023 TGTCCCAAAATAAGTATCTCAACTTT 57.066 30.769 0.00 0.00 40.20 2.66
5928 12168 9.310716 ACTAACTTTAGTACAAAGTTGAGACAC 57.689 33.333 27.85 0.00 46.41 3.67
5929 12169 9.530633 CTAACTTTAGTACAAAGTTGAGACACT 57.469 33.333 27.85 13.98 46.41 3.55
5930 12170 8.788325 AACTTTAGTACAAAGTTGAGACACTT 57.212 30.769 23.48 7.33 45.58 3.16
5931 12171 9.880157 AACTTTAGTACAAAGTTGAGACACTTA 57.120 29.630 23.48 0.00 45.58 2.24
5936 12176 8.154649 AGTACAAAGTTGAGACACTTATTTGG 57.845 34.615 0.00 0.00 35.87 3.28
5937 12177 6.391227 ACAAAGTTGAGACACTTATTTGGG 57.609 37.500 0.00 0.00 35.87 4.12
5938 12178 6.126409 ACAAAGTTGAGACACTTATTTGGGA 58.874 36.000 0.00 0.00 35.87 4.37
5939 12179 6.039382 ACAAAGTTGAGACACTTATTTGGGAC 59.961 38.462 0.00 0.00 35.87 4.46
5940 12180 4.652822 AGTTGAGACACTTATTTGGGACC 58.347 43.478 0.00 0.00 0.00 4.46
5941 12181 3.328382 TGAGACACTTATTTGGGACCG 57.672 47.619 0.00 0.00 0.00 4.79
5942 12182 2.901192 TGAGACACTTATTTGGGACCGA 59.099 45.455 0.00 0.00 0.00 4.69
5943 12183 3.056107 TGAGACACTTATTTGGGACCGAG 60.056 47.826 0.00 0.00 0.00 4.63
5944 12184 2.236395 AGACACTTATTTGGGACCGAGG 59.764 50.000 0.00 0.00 0.00 4.63
5945 12185 1.280998 ACACTTATTTGGGACCGAGGG 59.719 52.381 0.00 0.00 0.00 4.30
5951 12250 1.492764 TTTGGGACCGAGGGAGTATC 58.507 55.000 0.00 0.00 0.00 2.24
5954 12253 1.465200 GGGACCGAGGGAGTATCTGC 61.465 65.000 0.00 0.00 33.73 4.26
5984 12283 4.754114 TGCCAAGCAAATAAATTCACAACC 59.246 37.500 0.00 0.00 34.76 3.77
6101 12400 6.627087 ATTCATACAAGACTTCTTCCTCCA 57.373 37.500 0.00 0.00 33.11 3.86
6104 12403 5.306937 TCATACAAGACTTCTTCCTCCACAA 59.693 40.000 0.00 0.00 33.11 3.33
6185 12484 2.192861 CGGGCACAACCTTTGCTGA 61.193 57.895 0.00 0.00 40.07 4.26
6186 12485 1.662044 GGGCACAACCTTTGCTGAG 59.338 57.895 0.00 0.00 40.07 3.35
6187 12486 1.006922 GGCACAACCTTTGCTGAGC 60.007 57.895 0.00 0.00 40.07 4.26
6188 12487 1.006922 GCACAACCTTTGCTGAGCC 60.007 57.895 0.23 0.00 37.00 4.70
6304 12605 3.260884 TCGACTGGTAGAAAGCATTCCTT 59.739 43.478 0.00 0.00 36.12 3.36
6331 12632 1.566018 GCCGGTTTGTCTCCAGAACG 61.566 60.000 1.90 0.00 35.77 3.95
6336 12637 0.468226 TTTGTCTCCAGAACGCCAGT 59.532 50.000 0.00 0.00 0.00 4.00
6349 12650 1.238439 CGCCAGTGACCTTGTCAATT 58.762 50.000 0.00 0.00 44.49 2.32
6437 12738 6.775088 ACATATGAATACAACAGCAGAAACG 58.225 36.000 10.38 0.00 0.00 3.60
6438 12739 6.593770 ACATATGAATACAACAGCAGAAACGA 59.406 34.615 10.38 0.00 0.00 3.85
6439 12740 5.940192 ATGAATACAACAGCAGAAACGAA 57.060 34.783 0.00 0.00 0.00 3.85
6440 12741 5.743026 TGAATACAACAGCAGAAACGAAA 57.257 34.783 0.00 0.00 0.00 3.46
6441 12742 5.507077 TGAATACAACAGCAGAAACGAAAC 58.493 37.500 0.00 0.00 0.00 2.78
6442 12743 2.452006 ACAACAGCAGAAACGAAACG 57.548 45.000 0.00 0.00 0.00 3.60
6443 12744 1.063469 ACAACAGCAGAAACGAAACGG 59.937 47.619 0.00 0.00 0.00 4.44
6444 12745 0.661020 AACAGCAGAAACGAAACGGG 59.339 50.000 0.00 0.00 0.00 5.28
6445 12746 0.179067 ACAGCAGAAACGAAACGGGA 60.179 50.000 0.00 0.00 0.00 5.14
6446 12747 1.156736 CAGCAGAAACGAAACGGGAT 58.843 50.000 0.00 0.00 0.00 3.85
6447 12748 1.135972 CAGCAGAAACGAAACGGGATG 60.136 52.381 0.00 0.00 0.00 3.51
6448 12749 0.454452 GCAGAAACGAAACGGGATGC 60.454 55.000 0.00 0.00 0.00 3.91
6449 12750 0.871722 CAGAAACGAAACGGGATGCA 59.128 50.000 0.00 0.00 0.00 3.96
6450 12751 1.468520 CAGAAACGAAACGGGATGCAT 59.531 47.619 0.00 0.00 0.00 3.96
6451 12752 1.468520 AGAAACGAAACGGGATGCATG 59.531 47.619 2.46 0.00 0.00 4.06
6452 12753 1.199097 GAAACGAAACGGGATGCATGT 59.801 47.619 2.46 0.00 0.00 3.21
6453 12754 2.102070 AACGAAACGGGATGCATGTA 57.898 45.000 2.46 0.00 0.00 2.29
6454 12755 2.325583 ACGAAACGGGATGCATGTAT 57.674 45.000 2.46 0.00 0.00 2.29
6455 12756 1.939934 ACGAAACGGGATGCATGTATG 59.060 47.619 2.46 0.00 0.00 2.39
6456 12757 1.264020 CGAAACGGGATGCATGTATGG 59.736 52.381 2.46 0.00 0.00 2.74
6457 12758 2.297701 GAAACGGGATGCATGTATGGT 58.702 47.619 2.46 0.00 0.00 3.55
6458 12759 1.679139 AACGGGATGCATGTATGGTG 58.321 50.000 2.46 0.00 0.00 4.17
6459 12760 0.819259 ACGGGATGCATGTATGGTGC 60.819 55.000 2.46 0.00 42.81 5.01
6466 12767 3.574354 TGCATGTATGGTGCATAGGAA 57.426 42.857 0.00 0.00 46.76 3.36
6467 12768 4.103013 TGCATGTATGGTGCATAGGAAT 57.897 40.909 0.00 0.00 46.76 3.01
6468 12769 3.822167 TGCATGTATGGTGCATAGGAATG 59.178 43.478 0.00 0.00 46.76 2.67
6469 12770 3.192001 GCATGTATGGTGCATAGGAATGG 59.808 47.826 0.00 0.00 42.08 3.16
6470 12771 3.507162 TGTATGGTGCATAGGAATGGG 57.493 47.619 0.00 0.00 33.38 4.00
6471 12772 2.162681 GTATGGTGCATAGGAATGGGC 58.837 52.381 0.00 0.00 33.38 5.36
6472 12773 0.557238 ATGGTGCATAGGAATGGGCA 59.443 50.000 0.00 0.00 33.38 5.36
6473 12774 0.557238 TGGTGCATAGGAATGGGCAT 59.443 50.000 0.00 0.00 38.68 4.40
6474 12775 1.779700 TGGTGCATAGGAATGGGCATA 59.220 47.619 0.00 0.00 38.68 3.14
6475 12776 2.379567 TGGTGCATAGGAATGGGCATAT 59.620 45.455 0.00 0.00 38.68 1.78
6476 12777 3.591079 TGGTGCATAGGAATGGGCATATA 59.409 43.478 0.00 0.00 38.68 0.86
6477 12778 4.043938 TGGTGCATAGGAATGGGCATATAA 59.956 41.667 0.00 0.00 38.68 0.98
6478 12779 5.016173 GGTGCATAGGAATGGGCATATAAA 58.984 41.667 0.00 0.00 38.68 1.40
6479 12780 5.480073 GGTGCATAGGAATGGGCATATAAAA 59.520 40.000 0.00 0.00 38.68 1.52
6480 12781 6.155049 GGTGCATAGGAATGGGCATATAAAAT 59.845 38.462 0.00 0.00 38.68 1.82
6481 12782 7.310609 GGTGCATAGGAATGGGCATATAAAATT 60.311 37.037 0.00 0.00 38.68 1.82
6482 12783 8.748412 GTGCATAGGAATGGGCATATAAAATTA 58.252 33.333 0.00 0.00 38.68 1.40
6483 12784 8.970020 TGCATAGGAATGGGCATATAAAATTAG 58.030 33.333 0.00 0.00 33.38 1.73
6484 12785 8.416329 GCATAGGAATGGGCATATAAAATTAGG 58.584 37.037 0.00 0.00 33.38 2.69
6485 12786 6.857437 AGGAATGGGCATATAAAATTAGGC 57.143 37.500 0.00 0.00 0.00 3.93
6486 12787 5.418840 AGGAATGGGCATATAAAATTAGGCG 59.581 40.000 0.00 0.00 0.00 5.52
6487 12788 5.394115 GGAATGGGCATATAAAATTAGGCGG 60.394 44.000 0.00 0.00 0.00 6.13
6488 12789 4.107127 TGGGCATATAAAATTAGGCGGT 57.893 40.909 0.00 0.00 0.00 5.68
6489 12790 4.475345 TGGGCATATAAAATTAGGCGGTT 58.525 39.130 0.00 0.00 0.00 4.44
6490 12791 4.279671 TGGGCATATAAAATTAGGCGGTTG 59.720 41.667 0.00 0.00 0.00 3.77
6491 12792 4.279922 GGGCATATAAAATTAGGCGGTTGT 59.720 41.667 0.00 0.00 0.00 3.32
6492 12793 5.221362 GGGCATATAAAATTAGGCGGTTGTT 60.221 40.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.739913 CACGGTGGTTCGATTATGTGTT 59.260 45.455 0.00 0.00 0.00 3.32
10 11 1.066430 AGCACGGTGGTTCGATTATGT 60.066 47.619 7.07 0.00 0.00 2.29
65 66 3.432046 GGAAGAGGAGAAGGATCTTGCAG 60.432 52.174 0.00 0.00 40.09 4.41
77 78 8.329346 AGAAGAATTTGATATGGAAGAGGAGA 57.671 34.615 0.00 0.00 0.00 3.71
113 114 9.229784 GAACATTTTAGATGAGTTCGTCGTATA 57.770 33.333 0.00 0.00 36.99 1.47
260 263 4.243008 TCCGACAAACAGCGCCCA 62.243 61.111 2.29 0.00 0.00 5.36
308 314 0.759060 GGCTTCCTCCCTCTCTCTCC 60.759 65.000 0.00 0.00 0.00 3.71
361 369 0.727793 CATTTTTCCGGCGACCGTTG 60.728 55.000 9.30 3.55 46.80 4.10
705 728 3.250040 AGTTTGTACATTGACGTCCTTGC 59.750 43.478 14.12 0.00 0.00 4.01
710 733 4.084013 CCTTCCAGTTTGTACATTGACGTC 60.084 45.833 9.11 9.11 0.00 4.34
875 4314 2.132762 CGGACAAGTGGTTACTGACAC 58.867 52.381 0.00 0.00 37.19 3.67
932 4389 1.614824 AGAAGCAGTGGAGGGGAGG 60.615 63.158 0.00 0.00 0.00 4.30
990 4447 1.826921 CACCTCCATGGATGCCTGC 60.827 63.158 16.63 0.00 39.71 4.85
1307 4769 5.904362 TTTAGGAACGAAGGGAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
1309 4771 7.672122 AATATTTAGGAACGAAGGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
1310 4772 7.767659 ACAAATATTTAGGAACGAAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
1312 4774 6.718294 ACAAATATTTAGGAACGAAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
1313 4775 7.011482 CAGACAAATATTTAGGAACGAAGGGAG 59.989 40.741 0.00 0.00 0.00 4.30
1314 4776 6.821665 CAGACAAATATTTAGGAACGAAGGGA 59.178 38.462 0.00 0.00 0.00 4.20
1315 4777 6.598064 ACAGACAAATATTTAGGAACGAAGGG 59.402 38.462 0.00 0.00 0.00 3.95
1316 4778 7.549488 AGACAGACAAATATTTAGGAACGAAGG 59.451 37.037 0.00 0.00 0.00 3.46
1317 4779 8.480643 AGACAGACAAATATTTAGGAACGAAG 57.519 34.615 0.00 0.00 0.00 3.79
1318 4780 9.582431 CTAGACAGACAAATATTTAGGAACGAA 57.418 33.333 0.00 0.00 0.00 3.85
1319 4781 8.963725 TCTAGACAGACAAATATTTAGGAACGA 58.036 33.333 0.00 0.00 0.00 3.85
1320 4782 9.239002 CTCTAGACAGACAAATATTTAGGAACG 57.761 37.037 0.00 0.00 0.00 3.95
1328 4790 9.323985 GCTGAAATCTCTAGACAGACAAATATT 57.676 33.333 10.61 0.00 0.00 1.28
1329 4791 8.481314 TGCTGAAATCTCTAGACAGACAAATAT 58.519 33.333 10.61 0.00 0.00 1.28
1330 4792 7.840931 TGCTGAAATCTCTAGACAGACAAATA 58.159 34.615 10.61 0.00 0.00 1.40
1331 4793 6.705302 TGCTGAAATCTCTAGACAGACAAAT 58.295 36.000 10.61 0.00 0.00 2.32
1332 4794 6.101650 TGCTGAAATCTCTAGACAGACAAA 57.898 37.500 10.61 0.00 0.00 2.83
1333 4795 5.728637 TGCTGAAATCTCTAGACAGACAA 57.271 39.130 10.61 0.00 0.00 3.18
1334 4796 5.244851 ACTTGCTGAAATCTCTAGACAGACA 59.755 40.000 10.61 6.10 0.00 3.41
1335 4797 5.576384 CACTTGCTGAAATCTCTAGACAGAC 59.424 44.000 10.61 4.06 0.00 3.51
1336 4798 5.478332 TCACTTGCTGAAATCTCTAGACAGA 59.522 40.000 10.61 0.00 0.00 3.41
1337 4799 5.576384 GTCACTTGCTGAAATCTCTAGACAG 59.424 44.000 3.51 3.51 0.00 3.51
1338 4800 5.244851 AGTCACTTGCTGAAATCTCTAGACA 59.755 40.000 0.00 0.00 0.00 3.41
1339 4801 5.719173 AGTCACTTGCTGAAATCTCTAGAC 58.281 41.667 0.00 0.00 0.00 2.59
1340 4802 5.991933 AGTCACTTGCTGAAATCTCTAGA 57.008 39.130 0.00 0.00 0.00 2.43
1341 4803 6.625362 TGTAGTCACTTGCTGAAATCTCTAG 58.375 40.000 0.00 0.00 0.00 2.43
1342 4804 6.590234 TGTAGTCACTTGCTGAAATCTCTA 57.410 37.500 0.00 0.00 0.00 2.43
1343 4805 5.474578 TGTAGTCACTTGCTGAAATCTCT 57.525 39.130 0.00 0.00 0.00 3.10
1344 4806 6.020281 CGTATGTAGTCACTTGCTGAAATCTC 60.020 42.308 0.00 0.00 0.00 2.75
1345 4807 5.807520 CGTATGTAGTCACTTGCTGAAATCT 59.192 40.000 0.00 0.00 0.00 2.40
1346 4808 5.577164 ACGTATGTAGTCACTTGCTGAAATC 59.423 40.000 0.00 0.00 0.00 2.17
1347 4809 5.348724 CACGTATGTAGTCACTTGCTGAAAT 59.651 40.000 0.00 0.00 0.00 2.17
1348 4810 4.684242 CACGTATGTAGTCACTTGCTGAAA 59.316 41.667 0.00 0.00 0.00 2.69
1349 4811 4.234574 CACGTATGTAGTCACTTGCTGAA 58.765 43.478 0.00 0.00 0.00 3.02
1350 4812 3.254903 ACACGTATGTAGTCACTTGCTGA 59.745 43.478 0.00 0.00 37.26 4.26
1351 4813 3.575630 ACACGTATGTAGTCACTTGCTG 58.424 45.455 0.00 0.00 37.26 4.41
1352 4814 3.936372 ACACGTATGTAGTCACTTGCT 57.064 42.857 0.00 0.00 37.26 3.91
1353 4815 5.396484 TCTAACACGTATGTAGTCACTTGC 58.604 41.667 0.00 0.00 38.45 4.01
1354 4816 6.527023 CCTTCTAACACGTATGTAGTCACTTG 59.473 42.308 0.00 0.00 38.45 3.16
1355 4817 6.349944 CCCTTCTAACACGTATGTAGTCACTT 60.350 42.308 0.00 0.00 38.45 3.16
1356 4818 5.125097 CCCTTCTAACACGTATGTAGTCACT 59.875 44.000 0.00 0.00 38.45 3.41
1357 4819 5.124457 TCCCTTCTAACACGTATGTAGTCAC 59.876 44.000 0.00 0.00 38.45 3.67
1358 4820 5.255687 TCCCTTCTAACACGTATGTAGTCA 58.744 41.667 0.00 0.00 38.45 3.41
1359 4821 5.587844 TCTCCCTTCTAACACGTATGTAGTC 59.412 44.000 0.00 0.00 38.45 2.59
1360 4822 5.503927 TCTCCCTTCTAACACGTATGTAGT 58.496 41.667 0.00 0.00 38.45 2.73
1361 4823 5.821470 TCTCTCCCTTCTAACACGTATGTAG 59.179 44.000 0.00 0.00 38.45 2.74
1362 4824 5.748402 TCTCTCCCTTCTAACACGTATGTA 58.252 41.667 0.00 0.00 38.45 2.29
1363 4825 4.597004 TCTCTCCCTTCTAACACGTATGT 58.403 43.478 0.00 0.00 42.46 2.29
1364 4826 4.882427 TCTCTCTCCCTTCTAACACGTATG 59.118 45.833 0.00 0.00 0.00 2.39
1365 4827 5.113446 TCTCTCTCCCTTCTAACACGTAT 57.887 43.478 0.00 0.00 0.00 3.06
1366 4828 4.515361 CTCTCTCTCCCTTCTAACACGTA 58.485 47.826 0.00 0.00 0.00 3.57
1367 4829 3.349022 CTCTCTCTCCCTTCTAACACGT 58.651 50.000 0.00 0.00 0.00 4.49
1368 4830 2.685897 CCTCTCTCTCCCTTCTAACACG 59.314 54.545 0.00 0.00 0.00 4.49
1369 4831 3.703921 ACCTCTCTCTCCCTTCTAACAC 58.296 50.000 0.00 0.00 0.00 3.32
1414 4876 6.114187 TCGAGGCTCAATAATACATCCATT 57.886 37.500 15.95 0.00 0.00 3.16
1485 4947 5.901413 TCCGTCTCCTACCTTATCTCTAA 57.099 43.478 0.00 0.00 0.00 2.10
1587 5049 2.049063 GCGACGCTCCTGTTGTCT 60.049 61.111 13.73 0.00 0.00 3.41
1588 5050 3.470567 CGCGACGCTCCTGTTGTC 61.471 66.667 19.02 0.00 0.00 3.18
1653 5116 3.141488 CGCTCCCGCTAGGACTGT 61.141 66.667 0.00 0.00 40.93 3.55
1714 5177 1.372997 GCTTGAGCAACTCGTCGGA 60.373 57.895 0.00 0.00 41.59 4.55
1777 5243 2.927856 ATCACGGCTCCACCACCA 60.928 61.111 0.00 0.00 39.03 4.17
1793 5259 2.337749 CTTCGCACGGCTACCTCGAT 62.338 60.000 0.00 0.00 0.00 3.59
1841 5337 2.915659 ACTTCCTCGACACCGGCA 60.916 61.111 0.00 0.00 36.24 5.69
1964 5482 2.115266 CCCGGACTTGGCAAACCT 59.885 61.111 0.73 0.00 36.63 3.50
1976 5494 3.387091 CCACGATGTGTCCCCGGA 61.387 66.667 0.73 0.00 0.00 5.14
2045 5581 0.586802 GGCGCTTCGTCAACTTCTTT 59.413 50.000 7.64 0.00 0.00 2.52
2047 5583 2.022129 CGGCGCTTCGTCAACTTCT 61.022 57.895 7.64 0.00 0.00 2.85
2129 5666 2.607668 TTCCTCGTCTACGCATGCCG 62.608 60.000 13.15 9.62 44.21 5.69
2147 5684 1.372997 CGTACAGCTCGTGCAGGTT 60.373 57.895 12.58 0.00 42.74 3.50
2270 5808 0.592148 GCCGTCATCTACCCGACTAG 59.408 60.000 0.00 0.00 0.00 2.57
2272 5810 2.478890 CGCCGTCATCTACCCGACT 61.479 63.158 0.00 0.00 0.00 4.18
2314 5853 2.264794 CCCCCTTCGTCTTGGTCG 59.735 66.667 0.00 0.00 0.00 4.79
2318 5857 1.003718 GTCCACCCCCTTCGTCTTG 60.004 63.158 0.00 0.00 0.00 3.02
2345 5884 1.740285 CCGCTACCTTCATAGCCGT 59.260 57.895 0.00 0.00 44.02 5.68
2392 5938 0.040794 ACTCCTAACCTAGCCACCGT 59.959 55.000 0.00 0.00 0.00 4.83
2396 5942 1.327690 CCGCACTCCTAACCTAGCCA 61.328 60.000 0.00 0.00 0.00 4.75
2665 6237 3.601685 CCGTTGCGTTGCCCCTTT 61.602 61.111 0.00 0.00 0.00 3.11
2777 6350 1.515954 CTACATCGACCCGTGCCTT 59.484 57.895 0.00 0.00 0.00 4.35
2779 6352 2.585247 GCTACATCGACCCGTGCC 60.585 66.667 0.00 0.00 0.00 5.01
2793 6366 2.361992 TGGTTCTCCTCGCGGCTA 60.362 61.111 6.13 0.00 34.23 3.93
2966 6539 3.118454 CCGACCTTGTGCGCGATT 61.118 61.111 12.10 0.00 0.00 3.34
3048 6650 1.080772 GTCCGCACGATGTCTCACA 60.081 57.895 0.00 0.00 0.00 3.58
3164 6773 1.211969 GCGTCAGACTTGTCGGCTA 59.788 57.895 0.00 0.00 36.56 3.93
3298 6923 0.943673 CATGCGACGGCCAATCATAA 59.056 50.000 2.24 0.00 38.85 1.90
3400 7025 4.436998 CCGTCAGGGCCAGTCGTC 62.437 72.222 6.18 0.00 0.00 4.20
3467 7104 2.437359 CTACTCCGACCCCGACGT 60.437 66.667 0.00 0.00 38.22 4.34
3525 9701 6.067263 TGGTTTTTCGGTCTATTCTTGTTG 57.933 37.500 0.00 0.00 0.00 3.33
3527 9703 6.702716 TTTGGTTTTTCGGTCTATTCTTGT 57.297 33.333 0.00 0.00 0.00 3.16
3538 9714 4.270325 TGCGGTTTATTTTTGGTTTTTCGG 59.730 37.500 0.00 0.00 0.00 4.30
3553 9729 3.876914 GGTCATCTTGATCATGCGGTTTA 59.123 43.478 0.00 0.00 0.00 2.01
3561 9739 1.141657 CCCACCGGTCATCTTGATCAT 59.858 52.381 2.59 0.00 0.00 2.45
3562 9740 0.541392 CCCACCGGTCATCTTGATCA 59.459 55.000 2.59 0.00 0.00 2.92
3578 9758 1.198759 CCGGGGTTTTCTCTCTCCCA 61.199 60.000 0.00 0.00 41.51 4.37
3737 9920 0.693092 ATCCTAAACCCTAGCCGCCA 60.693 55.000 0.00 0.00 0.00 5.69
3764 9954 7.535738 TCTCCCTTCTAACATGGTATCTATCA 58.464 38.462 0.00 0.00 0.00 2.15
3819 10009 7.239763 TCGAGGCTCAATAATACATCCATTA 57.760 36.000 15.95 0.00 0.00 1.90
3820 10010 6.114187 TCGAGGCTCAATAATACATCCATT 57.886 37.500 15.95 0.00 0.00 3.16
3821 10011 5.337894 CCTCGAGGCTCAATAATACATCCAT 60.338 44.000 20.67 0.00 0.00 3.41
3893 10083 7.288560 TGTAATCCGTCTTCTACCTTATCTCT 58.711 38.462 0.00 0.00 0.00 3.10
3906 10096 6.793505 AGTCTAGGATTTGTAATCCGTCTT 57.206 37.500 11.65 0.00 42.87 3.01
3911 10101 9.628500 AATTTGGTAGTCTAGGATTTGTAATCC 57.372 33.333 9.88 9.88 38.47 3.01
3964 10154 4.943705 AGATTCACACATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
3965 10155 4.323417 AGATTCACACATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
3966 10156 3.149196 AGATTCACACATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
3967 10157 3.837213 AGATTCACACATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
3968 10158 5.645497 AGTCTAGATTCACACATTTTGCTCC 59.355 40.000 0.00 0.00 0.00 4.70
3969 10159 6.593382 AGAGTCTAGATTCACACATTTTGCTC 59.407 38.462 16.67 3.99 0.00 4.26
3970 10160 6.471146 AGAGTCTAGATTCACACATTTTGCT 58.529 36.000 16.67 0.00 0.00 3.91
3971 10161 6.734104 AGAGTCTAGATTCACACATTTTGC 57.266 37.500 16.67 0.00 0.00 3.68
4002 10192 9.565213 GGTTACCACATACGAATGTATATAGAC 57.435 37.037 0.00 0.00 44.70 2.59
4003 10193 9.299465 TGGTTACCACATACGAATGTATATAGA 57.701 33.333 0.00 0.00 44.70 1.98
4006 10196 9.787435 AAATGGTTACCACATACGAATGTATAT 57.213 29.630 6.10 0.00 44.70 0.86
4007 10197 9.047371 CAAATGGTTACCACATACGAATGTATA 57.953 33.333 6.10 0.00 44.70 1.47
4008 10198 7.771361 TCAAATGGTTACCACATACGAATGTAT 59.229 33.333 6.10 0.00 44.70 2.29
4009 10199 7.104290 TCAAATGGTTACCACATACGAATGTA 58.896 34.615 6.10 0.00 44.70 2.29
4011 10201 6.429791 TCAAATGGTTACCACATACGAATG 57.570 37.500 6.10 0.00 35.80 2.67
4012 10202 7.455641 TTTCAAATGGTTACCACATACGAAT 57.544 32.000 6.10 0.00 35.80 3.34
4013 10203 6.879276 TTTCAAATGGTTACCACATACGAA 57.121 33.333 6.10 2.96 35.80 3.85
4014 10204 6.882140 AGATTTCAAATGGTTACCACATACGA 59.118 34.615 6.10 0.00 35.80 3.43
4015 10205 7.065803 AGAGATTTCAAATGGTTACCACATACG 59.934 37.037 6.10 0.00 35.80 3.06
4016 10206 8.281212 AGAGATTTCAAATGGTTACCACATAC 57.719 34.615 6.10 0.00 35.80 2.39
4017 10207 9.967451 TTAGAGATTTCAAATGGTTACCACATA 57.033 29.630 6.10 0.00 35.80 2.29
4018 10208 8.877864 TTAGAGATTTCAAATGGTTACCACAT 57.122 30.769 6.10 0.00 35.80 3.21
4019 10209 8.698973 TTTAGAGATTTCAAATGGTTACCACA 57.301 30.769 6.10 0.00 35.80 4.17
4020 10210 9.974980 TTTTTAGAGATTTCAAATGGTTACCAC 57.025 29.630 6.10 0.00 35.80 4.16
4042 10232 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
4043 10233 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
4044 10234 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4045 10235 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4046 10236 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4047 10237 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4048 10238 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4049 10239 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4050 10240 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4051 10241 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
4052 10242 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4053 10243 7.398332 GGAATATACTCCCTCCGTTCCTAAATA 59.602 40.741 0.00 0.00 32.83 1.40
4054 10244 6.212993 GGAATATACTCCCTCCGTTCCTAAAT 59.787 42.308 0.00 0.00 32.83 1.40
4055 10245 5.541484 GGAATATACTCCCTCCGTTCCTAAA 59.459 44.000 0.00 0.00 32.83 1.85
4056 10246 5.082425 GGAATATACTCCCTCCGTTCCTAA 58.918 45.833 0.00 0.00 32.83 2.69
4057 10247 4.356190 AGGAATATACTCCCTCCGTTCCTA 59.644 45.833 0.00 0.00 41.43 2.94
4058 10248 3.142407 AGGAATATACTCCCTCCGTTCCT 59.858 47.826 0.00 0.00 39.18 3.36
4059 10249 3.508426 AGGAATATACTCCCTCCGTTCC 58.492 50.000 0.00 0.00 35.95 3.62
4060 10250 4.344390 ACAAGGAATATACTCCCTCCGTTC 59.656 45.833 0.00 0.00 35.95 3.95
4061 10251 4.296056 ACAAGGAATATACTCCCTCCGTT 58.704 43.478 0.00 0.00 35.95 4.44
4062 10252 3.924922 ACAAGGAATATACTCCCTCCGT 58.075 45.455 0.00 0.00 35.95 4.69
4063 10253 4.344102 TCAACAAGGAATATACTCCCTCCG 59.656 45.833 0.00 0.00 35.95 4.63
4064 10254 5.888982 TCAACAAGGAATATACTCCCTCC 57.111 43.478 0.00 0.00 35.95 4.30
4065 10255 7.067496 TCATCAACAAGGAATATACTCCCTC 57.933 40.000 0.00 0.00 35.95 4.30
4066 10256 6.617371 ACTCATCAACAAGGAATATACTCCCT 59.383 38.462 0.00 0.00 35.95 4.20
4067 10257 6.831976 ACTCATCAACAAGGAATATACTCCC 58.168 40.000 0.00 0.00 35.95 4.30
4068 10258 7.500992 TGACTCATCAACAAGGAATATACTCC 58.499 38.462 0.00 0.00 35.51 3.85
4069 10259 8.948631 TTGACTCATCAACAAGGAATATACTC 57.051 34.615 0.00 0.00 40.01 2.59
4070 10260 8.762645 TCTTGACTCATCAACAAGGAATATACT 58.237 33.333 0.00 0.00 40.01 2.12
4071 10261 8.948631 TCTTGACTCATCAACAAGGAATATAC 57.051 34.615 0.00 0.00 40.01 1.47
4072 10262 9.958180 TTTCTTGACTCATCAACAAGGAATATA 57.042 29.630 0.00 0.00 40.01 0.86
4073 10263 8.868522 TTTCTTGACTCATCAACAAGGAATAT 57.131 30.769 0.00 0.00 40.01 1.28
4074 10264 7.094634 GCTTTCTTGACTCATCAACAAGGAATA 60.095 37.037 0.00 0.00 40.01 1.75
4075 10265 6.294397 GCTTTCTTGACTCATCAACAAGGAAT 60.294 38.462 0.00 0.00 40.01 3.01
4086 10276 1.272147 GGGGTGGCTTTCTTGACTCAT 60.272 52.381 0.00 0.00 0.00 2.90
4344 10541 4.000557 GACACCACGCACGCACAG 62.001 66.667 0.00 0.00 0.00 3.66
4349 10546 2.310233 CCTTCAGACACCACGCACG 61.310 63.158 0.00 0.00 0.00 5.34
4361 10558 0.811915 ATGTCGTCCTCGTCCTTCAG 59.188 55.000 0.00 0.00 38.33 3.02
4396 10593 3.996124 AGCACGCGGAACTGCTCT 61.996 61.111 15.34 0.00 39.66 4.09
4557 10763 7.389607 AGCCAAACGACAACAAGTATATAAACT 59.610 33.333 0.00 0.00 0.00 2.66
4648 10854 4.742167 CGATCAGTACAAGTGCATTAGAGG 59.258 45.833 0.00 0.00 0.00 3.69
4727 10933 5.841810 TCAGGATTTGCCAAAAAGTAACAG 58.158 37.500 0.00 0.00 40.02 3.16
4731 10937 7.615365 AGATGTATCAGGATTTGCCAAAAAGTA 59.385 33.333 0.00 0.00 40.02 2.24
4732 10938 6.438425 AGATGTATCAGGATTTGCCAAAAAGT 59.562 34.615 0.00 0.00 40.02 2.66
4733 10939 6.870769 AGATGTATCAGGATTTGCCAAAAAG 58.129 36.000 0.00 0.00 40.02 2.27
4746 10954 6.938596 TGCATTTGGAATAGAGATGTATCAGG 59.061 38.462 0.00 0.00 0.00 3.86
4900 11115 3.314693 GTGGTGGGGTTCTATATCTGGA 58.685 50.000 0.00 0.00 0.00 3.86
4923 11138 4.384056 CGAGCTTATGACAAATCTCCCAT 58.616 43.478 0.00 0.00 0.00 4.00
4960 11184 3.363178 GGAGCAACAGAGTTCGTTTTTG 58.637 45.455 0.00 0.00 0.00 2.44
5032 11256 9.783425 GAGATTTTCGACATTCATTTTTGTTTC 57.217 29.630 0.00 0.00 0.00 2.78
5204 11428 0.765510 AGTCCCTCACCTTGTCAACC 59.234 55.000 0.00 0.00 0.00 3.77
5291 11515 2.821810 GCTTCTGCTTCGGCCTCC 60.822 66.667 0.00 0.00 40.91 4.30
5322 11546 3.721706 CTTGGAGCGGGGCCTCTT 61.722 66.667 0.00 0.00 32.43 2.85
5403 11627 6.153680 TCTGGGAAAACTACATGTGTGTTTTT 59.846 34.615 28.55 19.28 38.30 1.94
5408 11632 3.189287 GCTCTGGGAAAACTACATGTGTG 59.811 47.826 9.11 3.79 0.00 3.82
5508 11746 4.776322 CAGCCGGCGGTCCATTGA 62.776 66.667 28.82 0.00 0.00 2.57
5511 11749 3.849951 CTACAGCCGGCGGTCCAT 61.850 66.667 35.52 14.21 0.00 3.41
5853 12093 6.712276 ACTTATTTTGGGACAGAGGAAGTAG 58.288 40.000 0.00 0.00 42.39 2.57
5855 12095 5.584551 ACTTATTTTGGGACAGAGGAAGT 57.415 39.130 0.00 0.00 42.39 3.01
5856 12096 7.569240 AGATACTTATTTTGGGACAGAGGAAG 58.431 38.462 0.00 0.00 42.39 3.46
5857 12097 7.182026 TGAGATACTTATTTTGGGACAGAGGAA 59.818 37.037 0.00 0.00 42.39 3.36
5858 12098 6.672218 TGAGATACTTATTTTGGGACAGAGGA 59.328 38.462 0.00 0.00 42.39 3.71
5859 12099 6.889198 TGAGATACTTATTTTGGGACAGAGG 58.111 40.000 0.00 0.00 42.39 3.69
5860 12100 8.043710 AGTTGAGATACTTATTTTGGGACAGAG 58.956 37.037 0.00 0.00 42.39 3.35
5861 12101 7.918076 AGTTGAGATACTTATTTTGGGACAGA 58.082 34.615 0.00 0.00 42.39 3.41
5862 12102 8.567285 AAGTTGAGATACTTATTTTGGGACAG 57.433 34.615 0.00 0.00 36.66 3.51
5863 12103 8.934023 AAAGTTGAGATACTTATTTTGGGACA 57.066 30.769 0.00 0.00 37.37 4.02
5902 12142 9.310716 GTGTCTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 8.67 45.57 2.24
5903 12143 9.530633 AGTGTCTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 20.62 45.57 2.34
5904 12144 9.880157 AAGTGTCTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 13.47 45.57 2.24
5910 12150 9.268268 CCAAATAAGTGTCTCAACTTTGTACTA 57.732 33.333 0.00 0.00 40.77 1.82
5911 12151 7.228706 CCCAAATAAGTGTCTCAACTTTGTACT 59.771 37.037 0.00 0.00 40.77 2.73
5912 12152 7.227910 TCCCAAATAAGTGTCTCAACTTTGTAC 59.772 37.037 0.00 0.00 40.77 2.90
5913 12153 7.227910 GTCCCAAATAAGTGTCTCAACTTTGTA 59.772 37.037 0.00 0.00 40.77 2.41
5914 12154 6.039382 GTCCCAAATAAGTGTCTCAACTTTGT 59.961 38.462 0.00 0.00 40.77 2.83
5915 12155 6.438763 GTCCCAAATAAGTGTCTCAACTTTG 58.561 40.000 0.00 0.00 40.77 2.77
5916 12156 5.535030 GGTCCCAAATAAGTGTCTCAACTTT 59.465 40.000 0.00 0.00 40.77 2.66
5917 12157 5.070685 GGTCCCAAATAAGTGTCTCAACTT 58.929 41.667 0.00 0.00 42.89 2.66
5918 12158 4.652822 GGTCCCAAATAAGTGTCTCAACT 58.347 43.478 0.00 0.00 0.00 3.16
5919 12159 3.435671 CGGTCCCAAATAAGTGTCTCAAC 59.564 47.826 0.00 0.00 0.00 3.18
5920 12160 3.325425 TCGGTCCCAAATAAGTGTCTCAA 59.675 43.478 0.00 0.00 0.00 3.02
5921 12161 2.901192 TCGGTCCCAAATAAGTGTCTCA 59.099 45.455 0.00 0.00 0.00 3.27
5922 12162 3.522553 CTCGGTCCCAAATAAGTGTCTC 58.477 50.000 0.00 0.00 0.00 3.36
5923 12163 2.236395 CCTCGGTCCCAAATAAGTGTCT 59.764 50.000 0.00 0.00 0.00 3.41
5924 12164 2.629051 CCTCGGTCCCAAATAAGTGTC 58.371 52.381 0.00 0.00 0.00 3.67
5925 12165 1.280998 CCCTCGGTCCCAAATAAGTGT 59.719 52.381 0.00 0.00 0.00 3.55
5926 12166 1.557832 TCCCTCGGTCCCAAATAAGTG 59.442 52.381 0.00 0.00 0.00 3.16
5927 12167 1.838077 CTCCCTCGGTCCCAAATAAGT 59.162 52.381 0.00 0.00 0.00 2.24
5928 12168 1.838077 ACTCCCTCGGTCCCAAATAAG 59.162 52.381 0.00 0.00 0.00 1.73
5929 12169 1.961133 ACTCCCTCGGTCCCAAATAA 58.039 50.000 0.00 0.00 0.00 1.40
5930 12170 2.852714 TACTCCCTCGGTCCCAAATA 57.147 50.000 0.00 0.00 0.00 1.40
5931 12171 2.047830 GATACTCCCTCGGTCCCAAAT 58.952 52.381 0.00 0.00 0.00 2.32
5932 12172 1.007963 AGATACTCCCTCGGTCCCAAA 59.992 52.381 0.00 0.00 0.00 3.28
5933 12173 0.635009 AGATACTCCCTCGGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
5934 12174 0.106167 CAGATACTCCCTCGGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
5935 12175 1.465200 GCAGATACTCCCTCGGTCCC 61.465 65.000 0.00 0.00 0.00 4.46
5936 12176 1.465200 GGCAGATACTCCCTCGGTCC 61.465 65.000 0.00 0.00 0.00 4.46
5937 12177 0.755698 TGGCAGATACTCCCTCGGTC 60.756 60.000 0.00 0.00 0.00 4.79
5938 12178 0.325296 TTGGCAGATACTCCCTCGGT 60.325 55.000 0.00 0.00 0.00 4.69
5939 12179 0.830648 TTTGGCAGATACTCCCTCGG 59.169 55.000 0.00 0.00 0.00 4.63
5940 12180 2.918712 ATTTGGCAGATACTCCCTCG 57.081 50.000 0.00 0.00 0.00 4.63
5941 12181 4.006319 GCATATTTGGCAGATACTCCCTC 58.994 47.826 0.00 0.00 0.00 4.30
5942 12182 4.026356 GCATATTTGGCAGATACTCCCT 57.974 45.455 0.00 0.00 0.00 4.20
5954 12253 8.124199 GTGAATTTATTTGCTTGGCATATTTGG 58.876 33.333 0.00 0.00 38.76 3.28
5984 12283 4.439700 CCAAGCCTTATCATCTGTGCTTTG 60.440 45.833 0.00 0.00 36.97 2.77
6101 12400 1.035139 CCTGGCTTTGTTGAGCTTGT 58.965 50.000 0.00 0.00 42.32 3.16
6104 12403 1.152694 TGCCTGGCTTTGTTGAGCT 60.153 52.632 21.03 0.00 42.32 4.09
6185 12484 4.400961 GTTGGAGCTCTGGCGGCT 62.401 66.667 14.64 0.00 44.37 5.52
6186 12485 4.704833 TGTTGGAGCTCTGGCGGC 62.705 66.667 14.64 0.00 44.37 6.53
6187 12486 2.032528 TTGTTGGAGCTCTGGCGG 59.967 61.111 14.64 0.00 44.37 6.13
6188 12487 0.603707 TTCTTGTTGGAGCTCTGGCG 60.604 55.000 14.64 0.00 44.37 5.69
6304 12605 0.400213 AGACAAACCGGCCTGATGAA 59.600 50.000 0.00 0.00 0.00 2.57
6331 12632 3.383761 CAAAATTGACAAGGTCACTGGC 58.616 45.455 0.00 0.00 42.60 4.85
6336 12637 3.698539 TCACTGCAAAATTGACAAGGTCA 59.301 39.130 0.00 0.00 41.09 4.02
6349 12650 1.321474 CTGGGAAGCTTCACTGCAAA 58.679 50.000 28.18 7.86 34.99 3.68
6425 12726 0.661020 CCCGTTTCGTTTCTGCTGTT 59.339 50.000 0.00 0.00 0.00 3.16
6437 12738 2.033299 CACCATACATGCATCCCGTTTC 59.967 50.000 0.00 0.00 0.00 2.78
6438 12739 2.023673 CACCATACATGCATCCCGTTT 58.976 47.619 0.00 0.00 0.00 3.60
6439 12740 1.679139 CACCATACATGCATCCCGTT 58.321 50.000 0.00 0.00 0.00 4.44
6440 12741 0.819259 GCACCATACATGCATCCCGT 60.819 55.000 0.00 0.00 42.88 5.28
6441 12742 1.951510 GCACCATACATGCATCCCG 59.048 57.895 0.00 0.00 42.88 5.14
6447 12748 3.192001 CCATTCCTATGCACCATACATGC 59.808 47.826 0.00 0.00 43.68 4.06
6448 12749 3.760151 CCCATTCCTATGCACCATACATG 59.240 47.826 0.00 0.00 0.00 3.21
6449 12750 3.815396 GCCCATTCCTATGCACCATACAT 60.815 47.826 0.00 0.00 0.00 2.29
6450 12751 2.488891 GCCCATTCCTATGCACCATACA 60.489 50.000 0.00 0.00 0.00 2.29
6451 12752 2.162681 GCCCATTCCTATGCACCATAC 58.837 52.381 0.00 0.00 0.00 2.39
6452 12753 1.779700 TGCCCATTCCTATGCACCATA 59.220 47.619 0.00 0.00 0.00 2.74
6453 12754 0.557238 TGCCCATTCCTATGCACCAT 59.443 50.000 0.00 0.00 0.00 3.55
6454 12755 0.557238 ATGCCCATTCCTATGCACCA 59.443 50.000 0.00 0.00 36.41 4.17
6455 12756 2.584835 TATGCCCATTCCTATGCACC 57.415 50.000 0.00 0.00 36.41 5.01
6456 12757 6.588719 TTTTATATGCCCATTCCTATGCAC 57.411 37.500 0.00 0.00 36.41 4.57
6457 12758 7.795534 AATTTTATATGCCCATTCCTATGCA 57.204 32.000 0.00 0.00 38.23 3.96
6458 12759 8.416329 CCTAATTTTATATGCCCATTCCTATGC 58.584 37.037 0.00 0.00 0.00 3.14
6459 12760 8.416329 GCCTAATTTTATATGCCCATTCCTATG 58.584 37.037 0.00 0.00 0.00 2.23
6460 12761 7.285401 CGCCTAATTTTATATGCCCATTCCTAT 59.715 37.037 0.00 0.00 0.00 2.57
6461 12762 6.601613 CGCCTAATTTTATATGCCCATTCCTA 59.398 38.462 0.00 0.00 0.00 2.94
6462 12763 5.418840 CGCCTAATTTTATATGCCCATTCCT 59.581 40.000 0.00 0.00 0.00 3.36
6463 12764 5.394115 CCGCCTAATTTTATATGCCCATTCC 60.394 44.000 0.00 0.00 0.00 3.01
6464 12765 5.185056 ACCGCCTAATTTTATATGCCCATTC 59.815 40.000 0.00 0.00 0.00 2.67
6465 12766 5.083821 ACCGCCTAATTTTATATGCCCATT 58.916 37.500 0.00 0.00 0.00 3.16
6466 12767 4.672899 ACCGCCTAATTTTATATGCCCAT 58.327 39.130 0.00 0.00 0.00 4.00
6467 12768 4.107127 ACCGCCTAATTTTATATGCCCA 57.893 40.909 0.00 0.00 0.00 5.36
6468 12769 4.279922 ACAACCGCCTAATTTTATATGCCC 59.720 41.667 0.00 0.00 0.00 5.36
6469 12770 5.447624 ACAACCGCCTAATTTTATATGCC 57.552 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.