Multiple sequence alignment - TraesCS6B01G242200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G242200 chr6B 100.000 4567 0 0 1 4567 426825819 426830385 0.000000e+00 8434.0
1 TraesCS6B01G242200 chr6B 100.000 2766 0 0 4982 7747 426830800 426833565 0.000000e+00 5108.0
2 TraesCS6B01G242200 chr6B 97.961 2207 40 5 818 3021 426736094 426738298 0.000000e+00 3821.0
3 TraesCS6B01G242200 chr6B 95.130 2238 52 30 4984 7210 426749743 426751934 0.000000e+00 3476.0
4 TraesCS6B01G242200 chr6B 96.900 1871 47 6 1436 3305 426744195 426746055 0.000000e+00 3123.0
5 TraesCS6B01G242200 chr6B 94.727 1119 34 4 3304 4419 426748368 426749464 0.000000e+00 1716.0
6 TraesCS6B01G242200 chr6B 85.256 841 95 14 3 818 164725055 164725891 0.000000e+00 839.0
7 TraesCS6B01G242200 chr6B 91.154 260 13 7 7489 7738 426751962 426752221 2.070000e-90 344.0
8 TraesCS6B01G242200 chr6B 87.255 204 17 6 7209 7403 43756332 43756535 2.810000e-54 224.0
9 TraesCS6B01G242200 chr6B 98.529 68 1 0 7488 7555 426833241 426833308 3.800000e-23 121.0
10 TraesCS6B01G242200 chr6B 98.529 68 1 0 7423 7490 426833306 426833373 3.800000e-23 121.0
11 TraesCS6B01G242200 chr6B 97.015 67 2 0 7424 7490 426751962 426752028 6.350000e-21 113.0
12 TraesCS6B01G242200 chr6A 96.311 2494 87 4 815 3305 385750046 385747555 0.000000e+00 4091.0
13 TraesCS6B01G242200 chr6A 96.064 2490 90 5 818 3304 385824039 385821555 0.000000e+00 4048.0
14 TraesCS6B01G242200 chr6A 95.440 943 19 6 6285 7209 385815557 385814621 0.000000e+00 1482.0
15 TraesCS6B01G242200 chr6A 96.251 907 20 4 5109 6011 385742859 385741963 0.000000e+00 1474.0
16 TraesCS6B01G242200 chr6A 96.158 911 17 7 5109 6011 385816807 385815907 0.000000e+00 1472.0
17 TraesCS6B01G242200 chr6A 94.977 876 22 5 6356 7213 385734954 385734083 0.000000e+00 1354.0
18 TraesCS6B01G242200 chr6A 95.990 773 27 2 3305 4074 385819689 385818918 0.000000e+00 1253.0
19 TraesCS6B01G242200 chr6A 92.612 758 33 3 3304 4057 385745666 385744928 0.000000e+00 1068.0
20 TraesCS6B01G242200 chr6A 94.913 688 17 3 6352 7021 385737851 385737164 0.000000e+00 1061.0
21 TraesCS6B01G242200 chr6A 95.186 457 20 1 4113 4567 385818634 385818178 0.000000e+00 721.0
22 TraesCS6B01G242200 chr6A 94.686 414 20 1 4156 4567 385744631 385744218 6.550000e-180 641.0
23 TraesCS6B01G242200 chr6A 92.381 420 28 3 4151 4567 120343246 120342828 5.170000e-166 595.0
24 TraesCS6B01G242200 chr6A 84.929 564 72 13 123 684 83341871 83341319 6.790000e-155 558.0
25 TraesCS6B01G242200 chr6A 92.941 340 16 7 6011 6343 385815879 385815541 9.030000e-134 488.0
26 TraesCS6B01G242200 chr6A 96.000 275 9 1 6011 6283 385741935 385741661 5.510000e-121 446.0
27 TraesCS6B01G242200 chr6A 96.296 135 5 0 4982 5116 385818154 385818020 1.010000e-53 222.0
28 TraesCS6B01G242200 chr6A 90.066 151 9 3 7597 7747 385733892 385733748 2.850000e-44 191.0
29 TraesCS6B01G242200 chr6A 97.170 106 2 1 7489 7594 385734058 385733954 2.220000e-40 178.0
30 TraesCS6B01G242200 chr6A 96.226 106 3 1 7489 7594 385814589 385814485 1.030000e-38 172.0
31 TraesCS6B01G242200 chr6A 89.552 134 2 2 4984 5117 385744188 385744067 8.050000e-35 159.0
32 TraesCS6B01G242200 chr6A 98.438 64 0 1 7427 7490 385734055 385733993 2.290000e-20 111.0
33 TraesCS6B01G242200 chr6A 96.875 64 1 1 7427 7490 385814586 385814524 1.060000e-18 106.0
34 TraesCS6B01G242200 chr6A 97.778 45 1 0 5028 5072 385747899 385747855 2.320000e-10 78.7
35 TraesCS6B01G242200 chr6A 95.556 45 2 0 5028 5072 385821895 385821851 1.080000e-08 73.1
36 TraesCS6B01G242200 chr5B 87.070 843 80 17 1 820 210583496 210582660 0.000000e+00 926.0
37 TraesCS6B01G242200 chr5B 86.275 204 19 1 7205 7399 701261489 701261692 6.090000e-51 213.0
38 TraesCS6B01G242200 chr3D 86.401 853 76 16 3305 4145 581407544 581408368 0.000000e+00 896.0
39 TraesCS6B01G242200 chr3D 85.397 856 82 16 3304 4145 199120952 199121778 0.000000e+00 848.0
40 TraesCS6B01G242200 chr3D 80.432 695 99 24 142 812 46255020 46255701 5.400000e-136 496.0
41 TraesCS6B01G242200 chr3D 84.364 275 37 5 2886 3157 323276893 323277164 1.660000e-66 265.0
42 TraesCS6B01G242200 chr3D 85.714 119 17 0 1 119 365282322 365282440 8.160000e-25 126.0
43 TraesCS6B01G242200 chr3D 94.000 50 1 2 5028 5076 475663219 475663171 3.000000e-09 75.0
44 TraesCS6B01G242200 chr3D 95.556 45 2 0 5028 5072 323276967 323277011 1.080000e-08 73.1
45 TraesCS6B01G242200 chr3D 95.652 46 1 1 5028 5072 475775608 475775563 1.080000e-08 73.1
46 TraesCS6B01G242200 chr4D 86.049 853 78 18 3305 4145 132861042 132860219 0.000000e+00 878.0
47 TraesCS6B01G242200 chr4D 85.335 866 73 14 3305 4145 154929134 154928298 0.000000e+00 846.0
48 TraesCS6B01G242200 chr4D 92.217 424 29 3 4147 4567 346465476 346465898 1.440000e-166 597.0
49 TraesCS6B01G242200 chr4D 84.369 499 60 12 2 487 448184587 448185080 2.530000e-129 473.0
50 TraesCS6B01G242200 chr4D 86.538 208 19 1 7205 7403 73912086 73911879 3.640000e-53 220.0
51 TraesCS6B01G242200 chr4D 86.538 208 19 1 7205 7403 458117591 458117384 3.640000e-53 220.0
52 TraesCS6B01G242200 chr4D 87.640 178 16 5 2883 3057 346461340 346461514 1.320000e-47 202.0
53 TraesCS6B01G242200 chr4D 84.500 200 30 1 7205 7403 164783526 164783327 6.130000e-46 196.0
54 TraesCS6B01G242200 chr5D 85.932 853 79 20 3305 4145 528082402 528081579 0.000000e+00 872.0
55 TraesCS6B01G242200 chr5D 82.384 755 85 35 76 823 93857904 93857191 1.430000e-171 614.0
56 TraesCS6B01G242200 chr5D 92.143 420 29 3 4151 4567 332819682 332820100 2.410000e-164 590.0
57 TraesCS6B01G242200 chr5D 86.058 416 37 11 3730 4145 413581337 413580943 2.000000e-115 427.0
58 TraesCS6B01G242200 chr5D 78.326 729 97 33 142 823 497133392 497132678 1.560000e-111 414.0
59 TraesCS6B01G242200 chr5D 88.462 208 15 1 7205 7403 5532118 5532325 7.770000e-60 243.0
60 TraesCS6B01G242200 chr3A 85.815 853 79 25 3305 4145 329521464 329520642 0.000000e+00 867.0
61 TraesCS6B01G242200 chr3A 84.211 703 86 13 1 684 411254954 411255650 0.000000e+00 660.0
62 TraesCS6B01G242200 chr3A 83.880 701 89 13 1 684 533956311 533955618 0.000000e+00 647.0
63 TraesCS6B01G242200 chr3A 86.780 295 25 5 1 284 411254822 411255113 4.510000e-82 316.0
64 TraesCS6B01G242200 chr5A 85.029 855 84 15 3305 4145 216653962 216653138 0.000000e+00 830.0
65 TraesCS6B01G242200 chr5A 82.493 714 94 22 123 818 90634549 90635249 1.440000e-166 597.0
66 TraesCS6B01G242200 chr5A 80.339 707 84 34 142 819 9341758 9342438 1.170000e-132 484.0
67 TraesCS6B01G242200 chr5A 85.779 443 37 12 3706 4145 512388746 512388327 5.510000e-121 446.0
68 TraesCS6B01G242200 chr5A 85.553 443 41 12 3706 4145 634008212 634007790 7.130000e-120 442.0
69 TraesCS6B01G242200 chr5A 83.273 275 38 6 2886 3157 634020191 634019922 6.000000e-61 246.0
70 TraesCS6B01G242200 chr2B 85.963 748 69 12 3305 4043 1812240 1812960 0.000000e+00 767.0
71 TraesCS6B01G242200 chr7B 85.471 764 62 22 1 742 14867982 14868718 0.000000e+00 750.0
72 TraesCS6B01G242200 chr7B 93.095 420 25 3 4151 4567 685891634 685892052 5.140000e-171 612.0
73 TraesCS6B01G242200 chr7B 83.727 381 37 9 3768 4145 163960809 163960451 3.460000e-88 337.0
74 TraesCS6B01G242200 chr7B 88.835 206 13 7 7207 7403 12376043 12376247 2.160000e-60 244.0
75 TraesCS6B01G242200 chr7B 86.207 203 19 1 7210 7403 747511724 747511522 2.190000e-50 211.0
76 TraesCS6B01G242200 chr7B 84.286 210 23 8 7210 7410 642317532 642317324 6.130000e-46 196.0
77 TraesCS6B01G242200 chr1A 87.227 642 69 12 1 635 321857263 321856628 0.000000e+00 719.0
78 TraesCS6B01G242200 chr1A 83.193 714 88 21 123 818 358850632 358851331 6.600000e-175 625.0
79 TraesCS6B01G242200 chr1A 86.742 445 32 14 3706 4145 163387006 163386584 3.270000e-128 470.0
80 TraesCS6B01G242200 chr1A 83.747 443 49 5 3706 4145 384906944 384906522 1.570000e-106 398.0
81 TraesCS6B01G242200 chr2A 84.211 703 84 15 1 684 207370920 207370226 0.000000e+00 658.0
82 TraesCS6B01G242200 chrUn 92.453 424 28 4 4147 4567 110777908 110778330 3.090000e-168 603.0
83 TraesCS6B01G242200 chrUn 87.861 173 18 3 2886 3057 110773791 110773961 4.740000e-47 200.0
84 TraesCS6B01G242200 chr7D 91.981 424 30 3 4147 4567 127713446 127713024 6.690000e-165 592.0
85 TraesCS6B01G242200 chr7D 80.057 707 98 31 142 820 516990099 516990790 1.170000e-132 484.0
86 TraesCS6B01G242200 chr7D 87.500 208 16 2 7205 7403 135949155 135948949 1.680000e-56 231.0
87 TraesCS6B01G242200 chr7D 86.111 180 22 3 2881 3057 37029954 37029775 2.850000e-44 191.0
88 TraesCS6B01G242200 chr7D 84.615 117 17 1 3 119 28862322 28862437 1.770000e-21 115.0
89 TraesCS6B01G242200 chr7D 95.652 46 1 1 5028 5072 37029875 37029830 1.080000e-08 73.1
90 TraesCS6B01G242200 chr7D 86.885 61 8 0 759 819 30475177 30475237 1.390000e-07 69.4
91 TraesCS6B01G242200 chr6D 80.372 698 98 28 142 812 103049897 103050582 1.940000e-135 494.0
92 TraesCS6B01G242200 chr6D 87.019 208 18 1 7205 7403 25136094 25136301 7.820000e-55 226.0
93 TraesCS6B01G242200 chr1B 78.273 695 105 31 163 821 303682063 303681379 9.360000e-109 405.0
94 TraesCS6B01G242200 chr3B 87.379 206 17 4 7207 7403 218022549 218022344 2.170000e-55 228.0
95 TraesCS6B01G242200 chr2D 86.538 208 18 2 7205 7403 95718725 95718931 3.640000e-53 220.0
96 TraesCS6B01G242200 chr7A 85.990 207 21 4 7205 7403 616963162 616963368 1.690000e-51 215.0
97 TraesCS6B01G242200 chr4B 84.762 210 22 8 7207 7407 657889591 657889799 1.320000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G242200 chr6B 426825819 426833565 7746 False 3446.000000 8434 99.264500 1 7747 4 chr6B.!!$F5 7746
1 TraesCS6B01G242200 chr6B 426736094 426738298 2204 False 3821.000000 3821 97.961000 818 3021 1 chr6B.!!$F3 2203
2 TraesCS6B01G242200 chr6B 426744195 426752221 8026 False 1754.400000 3476 94.985200 1436 7738 5 chr6B.!!$F4 6302
3 TraesCS6B01G242200 chr6B 164725055 164725891 836 False 839.000000 839 85.256000 3 818 1 chr6B.!!$F2 815
4 TraesCS6B01G242200 chr6A 385814485 385824039 9554 True 1003.710000 4048 95.673200 818 7594 10 chr6A.!!$R4 6776
5 TraesCS6B01G242200 chr6A 385733748 385750046 16298 True 904.391667 4091 94.896167 815 7747 12 chr6A.!!$R3 6932
6 TraesCS6B01G242200 chr6A 83341319 83341871 552 True 558.000000 558 84.929000 123 684 1 chr6A.!!$R1 561
7 TraesCS6B01G242200 chr5B 210582660 210583496 836 True 926.000000 926 87.070000 1 820 1 chr5B.!!$R1 819
8 TraesCS6B01G242200 chr3D 581407544 581408368 824 False 896.000000 896 86.401000 3305 4145 1 chr3D.!!$F4 840
9 TraesCS6B01G242200 chr3D 199120952 199121778 826 False 848.000000 848 85.397000 3304 4145 1 chr3D.!!$F2 841
10 TraesCS6B01G242200 chr3D 46255020 46255701 681 False 496.000000 496 80.432000 142 812 1 chr3D.!!$F1 670
11 TraesCS6B01G242200 chr4D 132860219 132861042 823 True 878.000000 878 86.049000 3305 4145 1 chr4D.!!$R2 840
12 TraesCS6B01G242200 chr4D 154928298 154929134 836 True 846.000000 846 85.335000 3305 4145 1 chr4D.!!$R3 840
13 TraesCS6B01G242200 chr4D 346461340 346465898 4558 False 399.500000 597 89.928500 2883 4567 2 chr4D.!!$F2 1684
14 TraesCS6B01G242200 chr5D 528081579 528082402 823 True 872.000000 872 85.932000 3305 4145 1 chr5D.!!$R4 840
15 TraesCS6B01G242200 chr5D 93857191 93857904 713 True 614.000000 614 82.384000 76 823 1 chr5D.!!$R1 747
16 TraesCS6B01G242200 chr5D 497132678 497133392 714 True 414.000000 414 78.326000 142 823 1 chr5D.!!$R3 681
17 TraesCS6B01G242200 chr3A 329520642 329521464 822 True 867.000000 867 85.815000 3305 4145 1 chr3A.!!$R1 840
18 TraesCS6B01G242200 chr3A 533955618 533956311 693 True 647.000000 647 83.880000 1 684 1 chr3A.!!$R2 683
19 TraesCS6B01G242200 chr3A 411254822 411255650 828 False 488.000000 660 85.495500 1 684 2 chr3A.!!$F1 683
20 TraesCS6B01G242200 chr5A 216653138 216653962 824 True 830.000000 830 85.029000 3305 4145 1 chr5A.!!$R1 840
21 TraesCS6B01G242200 chr5A 90634549 90635249 700 False 597.000000 597 82.493000 123 818 1 chr5A.!!$F2 695
22 TraesCS6B01G242200 chr5A 9341758 9342438 680 False 484.000000 484 80.339000 142 819 1 chr5A.!!$F1 677
23 TraesCS6B01G242200 chr2B 1812240 1812960 720 False 767.000000 767 85.963000 3305 4043 1 chr2B.!!$F1 738
24 TraesCS6B01G242200 chr7B 14867982 14868718 736 False 750.000000 750 85.471000 1 742 1 chr7B.!!$F2 741
25 TraesCS6B01G242200 chr1A 321856628 321857263 635 True 719.000000 719 87.227000 1 635 1 chr1A.!!$R2 634
26 TraesCS6B01G242200 chr1A 358850632 358851331 699 False 625.000000 625 83.193000 123 818 1 chr1A.!!$F1 695
27 TraesCS6B01G242200 chr2A 207370226 207370920 694 True 658.000000 658 84.211000 1 684 1 chr2A.!!$R1 683
28 TraesCS6B01G242200 chrUn 110773791 110778330 4539 False 401.500000 603 90.157000 2886 4567 2 chrUn.!!$F1 1681
29 TraesCS6B01G242200 chr7D 516990099 516990790 691 False 484.000000 484 80.057000 142 820 1 chr7D.!!$F3 678
30 TraesCS6B01G242200 chr6D 103049897 103050582 685 False 494.000000 494 80.372000 142 812 1 chr6D.!!$F2 670
31 TraesCS6B01G242200 chr1B 303681379 303682063 684 True 405.000000 405 78.273000 163 821 1 chr1B.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 998 0.328592 GGTCCCTCCAGAAAGTTCCC 59.671 60.000 0.00 0.00 35.97 3.97 F
1281 1585 1.066143 ACCACCATCTTCGATGTCACC 60.066 52.381 3.47 0.00 0.00 4.02 F
1796 2103 0.652592 GGCGCTTATGCAGTGTACTG 59.347 55.000 7.64 7.64 46.40 2.74 F
3335 6386 0.241213 CTCGAGCGTCTTTCAGGTCA 59.759 55.000 0.00 0.00 34.85 4.02 F
4039 7146 0.321475 TGAATGGCAGTGTGCGATGA 60.321 50.000 0.00 0.00 46.21 2.92 F
4434 8726 0.385974 GATGCTTTCTTTGTGCGCGT 60.386 50.000 8.43 0.00 0.00 6.01 F
5432 10960 1.726865 CACTTGTCGTGGCAAAGCA 59.273 52.632 0.00 0.00 40.02 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 2103 1.020861 TGACTGACCGACATGCATGC 61.021 55.000 26.53 17.30 0.0 4.06 R
3087 3795 1.219124 GATGAGGGAGCTGCGACAA 59.781 57.895 0.00 0.00 0.0 3.18 R
3389 6440 2.255252 CGAGGGGCAAGCAAAACG 59.745 61.111 0.00 0.00 0.0 3.60 R
5026 9320 2.128771 TATCAGGAGGCAAAAGCCAC 57.871 50.000 9.42 2.08 0.0 5.01 R
5279 10807 2.576191 CAGGGAGGGTAATGTTGAGGAA 59.424 50.000 0.00 0.00 0.0 3.36 R
6105 11699 3.443052 TCCGATGAACTACCCCTACAAA 58.557 45.455 0.00 0.00 0.0 2.83 R
7326 19573 0.033109 ATCCAAGGCCCTAAGCAACC 60.033 55.000 0.00 0.00 46.5 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.926710 ACAAAATTTGAACACACGAACAATTTA 58.073 25.926 13.19 0.00 0.00 1.40
27 28 9.746711 CAAAATTTGAACACACGAACAATTTAA 57.253 25.926 0.00 0.00 0.00 1.52
258 408 4.759516 AACATTTACGGAAACTCGCAAT 57.240 36.364 0.00 0.00 0.00 3.56
668 957 5.476091 ACTCAGTTCAAGAACCTTCTAGG 57.524 43.478 9.20 0.00 42.06 3.02
702 991 1.064825 GTTCAGGGTCCCTCCAGAAA 58.935 55.000 7.76 0.00 34.95 2.52
705 995 1.068121 CAGGGTCCCTCCAGAAAGTT 58.932 55.000 7.76 0.00 38.11 2.66
708 998 0.328592 GGTCCCTCCAGAAAGTTCCC 59.671 60.000 0.00 0.00 35.97 3.97
758 1058 3.284336 GGCCCATTTTGGTCGGTC 58.716 61.111 0.00 0.00 35.17 4.79
762 1062 1.501741 CCATTTTGGTCGGTCGCTG 59.498 57.895 0.00 0.00 31.35 5.18
1048 1352 3.495806 GGAGGATGGTGATGATTCCACTC 60.496 52.174 0.00 0.00 36.50 3.51
1281 1585 1.066143 ACCACCATCTTCGATGTCACC 60.066 52.381 3.47 0.00 0.00 4.02
1796 2103 0.652592 GGCGCTTATGCAGTGTACTG 59.347 55.000 7.64 7.64 46.40 2.74
2116 2424 1.108727 CCCTGTGGTTGCTGCTTTCA 61.109 55.000 0.00 0.00 0.00 2.69
2140 2448 7.661437 TCACAATGTAAGTGCTACAGATCTTTT 59.339 33.333 0.00 0.00 43.78 2.27
2232 2540 2.027745 GCATGTATCCTCATCCCGTCAT 60.028 50.000 0.00 0.00 0.00 3.06
2233 2541 3.593096 CATGTATCCTCATCCCGTCATG 58.407 50.000 0.00 0.00 0.00 3.07
2857 3166 4.850680 ACAAGTGGTCAAAGTAAACCTCA 58.149 39.130 0.00 0.00 36.47 3.86
2861 3170 6.844097 AGTGGTCAAAGTAAACCTCAAAAA 57.156 33.333 0.00 0.00 36.47 1.94
2877 3186 7.386059 ACCTCAAAAATATGTTTTAGGCCTTG 58.614 34.615 12.58 0.00 36.88 3.61
3087 3795 3.991051 CCGTGTCTCCGTGCCTGT 61.991 66.667 0.00 0.00 0.00 4.00
3136 3847 5.665459 CTGTCGTTCCTTCAATCCTAGATT 58.335 41.667 0.00 0.00 0.00 2.40
3176 3887 2.642254 CCGCCCGTACTCTCCACAA 61.642 63.158 0.00 0.00 0.00 3.33
3335 6386 0.241213 CTCGAGCGTCTTTCAGGTCA 59.759 55.000 0.00 0.00 34.85 4.02
3389 6440 0.941542 TGTTTGGTTGCGTCTGCTAC 59.058 50.000 0.00 0.00 44.62 3.58
3442 6493 1.527311 GACCGCTCAGTTTGTTGAGTC 59.473 52.381 5.08 0.00 45.07 3.36
3474 6526 5.876651 TGGATACAGTGATGAGCATAAGT 57.123 39.130 0.00 0.00 46.17 2.24
3475 6527 5.847304 TGGATACAGTGATGAGCATAAGTC 58.153 41.667 0.00 0.00 46.17 3.01
3509 6561 0.462047 ATCCTGTCGGTCGCCAAATC 60.462 55.000 0.00 0.00 0.00 2.17
3534 6586 3.502123 TTTCTCGGGATGTGACCTTTT 57.498 42.857 0.00 0.00 0.00 2.27
3866 6949 2.375174 TGATGTGCCCTCTACTTTTGGT 59.625 45.455 0.00 0.00 0.00 3.67
3867 6950 2.270352 TGTGCCCTCTACTTTTGGTG 57.730 50.000 0.00 0.00 0.00 4.17
3868 6951 1.493022 TGTGCCCTCTACTTTTGGTGT 59.507 47.619 0.00 0.00 0.00 4.16
3869 6952 1.880027 GTGCCCTCTACTTTTGGTGTG 59.120 52.381 0.00 0.00 0.00 3.82
3870 6953 1.493022 TGCCCTCTACTTTTGGTGTGT 59.507 47.619 0.00 0.00 0.00 3.72
3871 6954 2.152016 GCCCTCTACTTTTGGTGTGTC 58.848 52.381 0.00 0.00 0.00 3.67
3872 6955 2.486548 GCCCTCTACTTTTGGTGTGTCA 60.487 50.000 0.00 0.00 0.00 3.58
3873 6956 3.810743 GCCCTCTACTTTTGGTGTGTCAT 60.811 47.826 0.00 0.00 0.00 3.06
3874 6957 4.003648 CCCTCTACTTTTGGTGTGTCATC 58.996 47.826 0.00 0.00 0.00 2.92
3875 6958 4.263068 CCCTCTACTTTTGGTGTGTCATCT 60.263 45.833 0.00 0.00 0.00 2.90
3876 6959 5.308825 CCTCTACTTTTGGTGTGTCATCTT 58.691 41.667 0.00 0.00 0.00 2.40
3877 6960 6.464222 CCTCTACTTTTGGTGTGTCATCTTA 58.536 40.000 0.00 0.00 0.00 2.10
3878 6961 6.369065 CCTCTACTTTTGGTGTGTCATCTTAC 59.631 42.308 0.00 0.00 0.00 2.34
3879 6962 7.062749 TCTACTTTTGGTGTGTCATCTTACT 57.937 36.000 0.00 0.00 0.00 2.24
3880 6963 7.506114 TCTACTTTTGGTGTGTCATCTTACTT 58.494 34.615 0.00 0.00 0.00 2.24
3881 6964 7.990886 TCTACTTTTGGTGTGTCATCTTACTTT 59.009 33.333 0.00 0.00 0.00 2.66
3882 6965 7.404671 ACTTTTGGTGTGTCATCTTACTTTT 57.595 32.000 0.00 0.00 0.00 2.27
3883 6966 7.257722 ACTTTTGGTGTGTCATCTTACTTTTG 58.742 34.615 0.00 0.00 0.00 2.44
3884 6967 5.766150 TTGGTGTGTCATCTTACTTTTGG 57.234 39.130 0.00 0.00 0.00 3.28
3954 7058 1.691337 CCCACCCCCTGACCGATAA 60.691 63.158 0.00 0.00 0.00 1.75
3958 7065 1.344763 CACCCCCTGACCGATAATCTC 59.655 57.143 0.00 0.00 0.00 2.75
3965 7072 2.294791 CTGACCGATAATCTCCTCGCTT 59.705 50.000 0.00 0.00 33.63 4.68
4039 7146 0.321475 TGAATGGCAGTGTGCGATGA 60.321 50.000 0.00 0.00 46.21 2.92
4043 7150 1.669115 GGCAGTGTGCGATGACAGT 60.669 57.895 0.00 0.00 46.21 3.55
4074 7181 2.034879 CCTTTGAGCGCACCGACAT 61.035 57.895 11.47 0.00 0.00 3.06
4076 7183 2.839324 CTTTGAGCGCACCGACATGC 62.839 60.000 11.47 0.00 42.48 4.06
4100 7220 2.723530 TCTGGTTTCTCTTCCTCCCT 57.276 50.000 0.00 0.00 0.00 4.20
4208 8500 2.892852 TCATTTGCCTGGAAGACAAAGG 59.107 45.455 0.00 0.17 36.78 3.11
4306 8598 2.991866 GTTACGCTGGTTACTTGAGGAC 59.008 50.000 0.00 0.00 0.00 3.85
4434 8726 0.385974 GATGCTTTCTTTGTGCGCGT 60.386 50.000 8.43 0.00 0.00 6.01
4452 8744 1.902918 TTGGTGTGCAGGACCATGC 60.903 57.895 16.50 8.49 43.13 4.06
4484 8778 5.222079 TCAGTATGTGCCTTCTGTTACAA 57.778 39.130 0.00 0.00 37.40 2.41
5279 10807 4.929479 TGTATCTTTTACCCCAGTGCATT 58.071 39.130 0.00 0.00 0.00 3.56
5413 10941 1.879380 TGCCAAGTCACGAGAATTTGG 59.121 47.619 17.48 17.48 40.81 3.28
5432 10960 1.726865 CACTTGTCGTGGCAAAGCA 59.273 52.632 0.00 0.00 40.02 3.91
5756 11291 3.187227 CGTACCAATCCTTCATATGCTGC 59.813 47.826 0.00 0.00 0.00 5.25
6105 11699 4.536090 TGTATCCTGGATTGACTTTGGAGT 59.464 41.667 15.55 0.00 39.32 3.85
6339 11980 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6341 11982 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6421 15769 4.400120 AGATACTACTAGCCTTTCCCTCG 58.600 47.826 0.00 0.00 0.00 4.63
7206 19453 6.609616 AGGAAAACTGATTGGTTGGACTTTTA 59.390 34.615 0.00 0.00 0.00 1.52
7207 19454 6.700081 GGAAAACTGATTGGTTGGACTTTTAC 59.300 38.462 0.00 0.00 0.00 2.01
7208 19455 6.783708 AAACTGATTGGTTGGACTTTTACA 57.216 33.333 0.00 0.00 0.00 2.41
7209 19456 6.783708 AACTGATTGGTTGGACTTTTACAA 57.216 33.333 0.00 0.00 0.00 2.41
7210 19457 6.783708 ACTGATTGGTTGGACTTTTACAAA 57.216 33.333 0.00 0.00 0.00 2.83
7211 19458 6.569780 ACTGATTGGTTGGACTTTTACAAAC 58.430 36.000 0.00 0.00 34.94 2.93
7212 19459 6.153680 ACTGATTGGTTGGACTTTTACAAACA 59.846 34.615 0.00 0.00 42.07 2.83
7213 19460 6.568869 TGATTGGTTGGACTTTTACAAACAG 58.431 36.000 0.00 0.00 44.20 3.16
7214 19461 4.379339 TGGTTGGACTTTTACAAACAGC 57.621 40.909 0.00 0.00 39.20 4.40
7215 19462 3.764434 TGGTTGGACTTTTACAAACAGCA 59.236 39.130 0.00 0.00 39.20 4.41
7216 19463 4.220821 TGGTTGGACTTTTACAAACAGCAA 59.779 37.500 0.00 0.00 39.20 3.91
7217 19464 4.565166 GGTTGGACTTTTACAAACAGCAAC 59.435 41.667 0.00 0.00 34.52 4.17
7218 19465 4.022464 TGGACTTTTACAAACAGCAACG 57.978 40.909 0.00 0.00 0.00 4.10
7219 19466 2.787129 GGACTTTTACAAACAGCAACGC 59.213 45.455 0.00 0.00 0.00 4.84
7220 19467 3.430931 GACTTTTACAAACAGCAACGCA 58.569 40.909 0.00 0.00 0.00 5.24
7221 19468 4.040445 ACTTTTACAAACAGCAACGCAT 57.960 36.364 0.00 0.00 0.00 4.73
7222 19469 3.796178 ACTTTTACAAACAGCAACGCATG 59.204 39.130 0.00 0.00 0.00 4.06
7232 19479 3.798646 CAACGCATGCAGGTCAAAT 57.201 47.368 19.57 0.00 0.00 2.32
7233 19480 2.068837 CAACGCATGCAGGTCAAATT 57.931 45.000 19.57 0.00 0.00 1.82
7234 19481 2.406130 CAACGCATGCAGGTCAAATTT 58.594 42.857 19.57 0.00 0.00 1.82
7235 19482 2.352503 ACGCATGCAGGTCAAATTTC 57.647 45.000 19.57 0.00 0.00 2.17
7236 19483 1.888512 ACGCATGCAGGTCAAATTTCT 59.111 42.857 19.57 0.00 0.00 2.52
7237 19484 2.095059 ACGCATGCAGGTCAAATTTCTC 60.095 45.455 19.57 0.00 0.00 2.87
7238 19485 2.733227 CGCATGCAGGTCAAATTTCTCC 60.733 50.000 19.57 0.00 0.00 3.71
7239 19486 2.494870 GCATGCAGGTCAAATTTCTCCT 59.505 45.455 14.21 5.21 0.00 3.69
7240 19487 3.675228 GCATGCAGGTCAAATTTCTCCTG 60.675 47.826 23.37 23.37 46.96 3.86
7241 19488 3.228188 TGCAGGTCAAATTTCTCCTGT 57.772 42.857 25.89 3.39 46.23 4.00
7242 19489 3.149196 TGCAGGTCAAATTTCTCCTGTC 58.851 45.455 25.89 20.88 46.23 3.51
7243 19490 3.181440 TGCAGGTCAAATTTCTCCTGTCT 60.181 43.478 25.89 4.44 46.23 3.41
7244 19491 3.190118 GCAGGTCAAATTTCTCCTGTCTG 59.810 47.826 25.89 13.50 46.23 3.51
7245 19492 4.392940 CAGGTCAAATTTCTCCTGTCTGT 58.607 43.478 21.09 0.00 41.51 3.41
7246 19493 4.214971 CAGGTCAAATTTCTCCTGTCTGTG 59.785 45.833 21.09 5.01 41.51 3.66
7247 19494 3.057946 GGTCAAATTTCTCCTGTCTGTGC 60.058 47.826 0.00 0.00 0.00 4.57
7248 19495 3.817647 GTCAAATTTCTCCTGTCTGTGCT 59.182 43.478 0.00 0.00 0.00 4.40
7249 19496 4.067896 TCAAATTTCTCCTGTCTGTGCTC 58.932 43.478 0.00 0.00 0.00 4.26
7250 19497 3.777106 AATTTCTCCTGTCTGTGCTCA 57.223 42.857 0.00 0.00 0.00 4.26
7251 19498 3.996921 ATTTCTCCTGTCTGTGCTCAT 57.003 42.857 0.00 0.00 0.00 2.90
7252 19499 3.325293 TTTCTCCTGTCTGTGCTCATC 57.675 47.619 0.00 0.00 0.00 2.92
7253 19500 1.189752 TCTCCTGTCTGTGCTCATCC 58.810 55.000 0.00 0.00 0.00 3.51
7254 19501 0.177604 CTCCTGTCTGTGCTCATCCC 59.822 60.000 0.00 0.00 0.00 3.85
7255 19502 0.545071 TCCTGTCTGTGCTCATCCCA 60.545 55.000 0.00 0.00 0.00 4.37
7256 19503 0.392193 CCTGTCTGTGCTCATCCCAC 60.392 60.000 0.00 0.00 0.00 4.61
7257 19504 0.322648 CTGTCTGTGCTCATCCCACA 59.677 55.000 0.00 0.00 40.61 4.17
7258 19505 0.035317 TGTCTGTGCTCATCCCACAC 59.965 55.000 0.00 0.00 38.21 3.82
7259 19506 1.016130 GTCTGTGCTCATCCCACACG 61.016 60.000 0.00 0.00 38.21 4.49
7260 19507 2.358615 TGTGCTCATCCCACACGC 60.359 61.111 0.00 0.00 38.21 5.34
7261 19508 3.490759 GTGCTCATCCCACACGCG 61.491 66.667 3.53 3.53 33.50 6.01
7262 19509 4.002506 TGCTCATCCCACACGCGT 62.003 61.111 5.58 5.58 0.00 6.01
7263 19510 2.183300 GCTCATCCCACACGCGTA 59.817 61.111 13.44 0.00 0.00 4.42
7264 19511 2.165301 GCTCATCCCACACGCGTAC 61.165 63.158 13.44 0.00 0.00 3.67
7265 19512 1.214325 CTCATCCCACACGCGTACA 59.786 57.895 13.44 0.00 0.00 2.90
7266 19513 1.076533 CTCATCCCACACGCGTACAC 61.077 60.000 13.44 0.00 0.00 2.90
7267 19514 2.098233 CATCCCACACGCGTACACC 61.098 63.158 13.44 0.00 0.00 4.16
7268 19515 3.636313 ATCCCACACGCGTACACCG 62.636 63.158 13.44 0.50 40.40 4.94
7269 19516 4.651008 CCCACACGCGTACACCGT 62.651 66.667 13.44 1.32 39.91 4.83
7270 19517 2.659244 CCACACGCGTACACCGTT 60.659 61.111 13.44 0.00 36.69 4.44
7271 19518 2.239124 CCACACGCGTACACCGTTT 61.239 57.895 13.44 0.00 36.69 3.60
7272 19519 1.637402 CACACGCGTACACCGTTTT 59.363 52.632 13.44 0.00 36.69 2.43
7273 19520 0.382151 CACACGCGTACACCGTTTTC 60.382 55.000 13.44 0.00 36.69 2.29
7274 19521 0.805322 ACACGCGTACACCGTTTTCA 60.805 50.000 13.44 0.00 36.69 2.69
7275 19522 0.509499 CACGCGTACACCGTTTTCAT 59.491 50.000 13.44 0.00 36.69 2.57
7276 19523 1.070443 CACGCGTACACCGTTTTCATT 60.070 47.619 13.44 0.00 36.69 2.57
7277 19524 1.192980 ACGCGTACACCGTTTTCATTC 59.807 47.619 11.67 0.00 39.32 2.67
7278 19525 1.192757 CGCGTACACCGTTTTCATTCA 59.807 47.619 0.00 0.00 39.32 2.57
7279 19526 2.348685 CGCGTACACCGTTTTCATTCAA 60.349 45.455 0.00 0.00 39.32 2.69
7280 19527 3.619729 GCGTACACCGTTTTCATTCAAA 58.380 40.909 0.00 0.00 39.32 2.69
7281 19528 4.036352 GCGTACACCGTTTTCATTCAAAA 58.964 39.130 0.00 0.00 39.32 2.44
7282 19529 4.145756 GCGTACACCGTTTTCATTCAAAAG 59.854 41.667 0.00 0.00 34.49 2.27
7283 19530 5.267776 CGTACACCGTTTTCATTCAAAAGT 58.732 37.500 0.00 0.00 34.49 2.66
7284 19531 5.740099 CGTACACCGTTTTCATTCAAAAGTT 59.260 36.000 0.00 0.00 34.49 2.66
7285 19532 6.075780 CGTACACCGTTTTCATTCAAAAGTTC 60.076 38.462 0.00 0.00 34.49 3.01
7286 19533 5.961272 ACACCGTTTTCATTCAAAAGTTCT 58.039 33.333 0.00 0.00 34.49 3.01
7287 19534 6.394809 ACACCGTTTTCATTCAAAAGTTCTT 58.605 32.000 0.00 0.00 34.49 2.52
7288 19535 7.540299 ACACCGTTTTCATTCAAAAGTTCTTA 58.460 30.769 0.00 0.00 34.49 2.10
7289 19536 8.030106 ACACCGTTTTCATTCAAAAGTTCTTAA 58.970 29.630 0.00 0.00 34.49 1.85
7290 19537 8.865001 CACCGTTTTCATTCAAAAGTTCTTAAA 58.135 29.630 0.00 0.00 34.49 1.52
7291 19538 8.865978 ACCGTTTTCATTCAAAAGTTCTTAAAC 58.134 29.630 0.00 0.00 34.49 2.01
7298 19545 9.691362 TCATTCAAAAGTTCTTAAACTAATGGC 57.309 29.630 9.76 0.00 45.07 4.40
7299 19546 8.925700 CATTCAAAAGTTCTTAAACTAATGGCC 58.074 33.333 0.00 0.00 45.07 5.36
7300 19547 7.833285 TCAAAAGTTCTTAAACTAATGGCCT 57.167 32.000 3.32 0.00 45.07 5.19
7301 19548 8.245195 TCAAAAGTTCTTAAACTAATGGCCTT 57.755 30.769 3.32 0.00 45.07 4.35
7302 19549 9.357161 TCAAAAGTTCTTAAACTAATGGCCTTA 57.643 29.630 3.32 0.00 45.07 2.69
7303 19550 9.626045 CAAAAGTTCTTAAACTAATGGCCTTAG 57.374 33.333 16.08 16.08 45.07 2.18
7304 19551 7.939784 AAGTTCTTAAACTAATGGCCTTAGG 57.060 36.000 19.68 0.00 45.07 2.69
7305 19552 7.029053 AGTTCTTAAACTAATGGCCTTAGGT 57.971 36.000 19.68 13.87 43.98 3.08
7306 19553 8.154420 AGTTCTTAAACTAATGGCCTTAGGTA 57.846 34.615 19.68 11.95 43.98 3.08
7307 19554 8.779031 AGTTCTTAAACTAATGGCCTTAGGTAT 58.221 33.333 19.68 11.31 43.98 2.73
7310 19557 9.216148 TCTTAAACTAATGGCCTTAGGTATACA 57.784 33.333 19.68 0.00 36.30 2.29
7313 19560 7.626999 AACTAATGGCCTTAGGTATACATCA 57.373 36.000 19.68 0.00 41.07 3.07
7314 19561 7.626999 ACTAATGGCCTTAGGTATACATCAA 57.373 36.000 19.68 0.00 41.07 2.57
7315 19562 8.219660 ACTAATGGCCTTAGGTATACATCAAT 57.780 34.615 19.68 0.00 41.07 2.57
7316 19563 8.103305 ACTAATGGCCTTAGGTATACATCAATG 58.897 37.037 19.68 0.00 41.07 2.82
7317 19564 5.904984 TGGCCTTAGGTATACATCAATGT 57.095 39.130 3.32 0.70 44.48 2.71
7318 19565 6.260700 TGGCCTTAGGTATACATCAATGTT 57.739 37.500 3.32 0.00 41.97 2.71
7319 19566 6.061441 TGGCCTTAGGTATACATCAATGTTG 58.939 40.000 3.32 0.00 41.97 3.33
7320 19567 6.062095 GGCCTTAGGTATACATCAATGTTGT 58.938 40.000 5.01 2.34 41.97 3.32
7321 19568 6.546034 GGCCTTAGGTATACATCAATGTTGTT 59.454 38.462 5.01 0.00 41.97 2.83
7322 19569 7.417612 GCCTTAGGTATACATCAATGTTGTTG 58.582 38.462 5.01 3.02 41.97 3.33
7323 19570 7.067008 GCCTTAGGTATACATCAATGTTGTTGT 59.933 37.037 5.01 12.49 42.12 3.32
7324 19571 8.956426 CCTTAGGTATACATCAATGTTGTTGTT 58.044 33.333 12.96 6.07 40.47 2.83
7325 19572 9.773328 CTTAGGTATACATCAATGTTGTTGTTG 57.227 33.333 12.96 2.40 40.47 3.33
7326 19573 7.156876 AGGTATACATCAATGTTGTTGTTGG 57.843 36.000 12.96 0.00 40.47 3.77
7327 19574 6.152661 AGGTATACATCAATGTTGTTGTTGGG 59.847 38.462 12.96 0.00 40.47 4.12
7328 19575 6.071616 GGTATACATCAATGTTGTTGTTGGGT 60.072 38.462 12.96 3.43 40.47 4.51
7329 19576 4.751767 ACATCAATGTTGTTGTTGGGTT 57.248 36.364 4.13 0.00 37.73 4.11
7330 19577 4.440880 ACATCAATGTTGTTGTTGGGTTG 58.559 39.130 4.13 0.00 37.73 3.77
7331 19578 2.898705 TCAATGTTGTTGTTGGGTTGC 58.101 42.857 0.00 0.00 0.00 4.17
7332 19579 2.499289 TCAATGTTGTTGTTGGGTTGCT 59.501 40.909 0.00 0.00 0.00 3.91
7333 19580 3.055530 TCAATGTTGTTGTTGGGTTGCTT 60.056 39.130 0.00 0.00 0.00 3.91
7334 19581 4.160439 TCAATGTTGTTGTTGGGTTGCTTA 59.840 37.500 0.00 0.00 0.00 3.09
7335 19582 3.791973 TGTTGTTGTTGGGTTGCTTAG 57.208 42.857 0.00 0.00 0.00 2.18
7336 19583 2.428890 TGTTGTTGTTGGGTTGCTTAGG 59.571 45.455 0.00 0.00 0.00 2.69
7337 19584 1.698506 TGTTGTTGGGTTGCTTAGGG 58.301 50.000 0.00 0.00 0.00 3.53
7338 19585 0.317160 GTTGTTGGGTTGCTTAGGGC 59.683 55.000 0.00 0.00 42.22 5.19
7339 19586 0.830023 TTGTTGGGTTGCTTAGGGCC 60.830 55.000 0.00 0.00 40.92 5.80
7340 19587 1.076727 GTTGGGTTGCTTAGGGCCT 59.923 57.895 12.58 12.58 40.92 5.19
7341 19588 0.541998 GTTGGGTTGCTTAGGGCCTT 60.542 55.000 13.45 0.00 40.92 4.35
7342 19589 0.541764 TTGGGTTGCTTAGGGCCTTG 60.542 55.000 13.45 6.62 40.92 3.61
7343 19590 1.682344 GGGTTGCTTAGGGCCTTGG 60.682 63.158 13.45 6.18 40.92 3.61
7344 19591 1.382629 GGTTGCTTAGGGCCTTGGA 59.617 57.895 13.45 3.44 40.92 3.53
7345 19592 0.033109 GGTTGCTTAGGGCCTTGGAT 60.033 55.000 13.45 0.00 40.92 3.41
7346 19593 1.106285 GTTGCTTAGGGCCTTGGATG 58.894 55.000 13.45 0.00 40.92 3.51
7347 19594 0.998928 TTGCTTAGGGCCTTGGATGA 59.001 50.000 13.45 0.00 40.92 2.92
7348 19595 0.548031 TGCTTAGGGCCTTGGATGAG 59.452 55.000 13.45 1.86 40.92 2.90
7349 19596 0.548510 GCTTAGGGCCTTGGATGAGT 59.451 55.000 13.45 0.00 34.27 3.41
7350 19597 1.768870 GCTTAGGGCCTTGGATGAGTA 59.231 52.381 13.45 0.00 34.27 2.59
7351 19598 2.485657 GCTTAGGGCCTTGGATGAGTAC 60.486 54.545 13.45 0.00 34.27 2.73
7352 19599 2.868964 TAGGGCCTTGGATGAGTACT 57.131 50.000 13.45 0.00 0.00 2.73
7353 19600 1.207791 AGGGCCTTGGATGAGTACTG 58.792 55.000 0.00 0.00 0.00 2.74
7354 19601 0.912486 GGGCCTTGGATGAGTACTGT 59.088 55.000 0.00 0.00 0.00 3.55
7355 19602 1.134371 GGGCCTTGGATGAGTACTGTC 60.134 57.143 0.00 0.00 0.00 3.51
7356 19603 1.555075 GGCCTTGGATGAGTACTGTCA 59.445 52.381 0.00 0.00 0.00 3.58
7357 19604 2.171448 GGCCTTGGATGAGTACTGTCAT 59.829 50.000 0.00 0.00 40.00 3.06
7370 19617 9.896645 ATGAGTACTGTCATCATAATGAACTTT 57.103 29.630 0.00 0.00 43.42 2.66
7371 19618 9.725019 TGAGTACTGTCATCATAATGAACTTTT 57.275 29.630 0.00 0.00 43.42 2.27
7372 19619 9.979270 GAGTACTGTCATCATAATGAACTTTTG 57.021 33.333 0.00 0.00 43.42 2.44
7373 19620 8.454106 AGTACTGTCATCATAATGAACTTTTGC 58.546 33.333 0.00 0.00 43.42 3.68
7374 19621 7.458409 ACTGTCATCATAATGAACTTTTGCT 57.542 32.000 0.00 0.00 43.42 3.91
7375 19622 7.889469 ACTGTCATCATAATGAACTTTTGCTT 58.111 30.769 0.00 0.00 43.42 3.91
7376 19623 8.025445 ACTGTCATCATAATGAACTTTTGCTTC 58.975 33.333 0.00 0.00 43.42 3.86
7377 19624 7.884257 TGTCATCATAATGAACTTTTGCTTCA 58.116 30.769 0.00 0.00 43.42 3.02
7378 19625 8.525316 TGTCATCATAATGAACTTTTGCTTCAT 58.475 29.630 0.00 0.00 43.42 2.57
7379 19626 8.804743 GTCATCATAATGAACTTTTGCTTCATG 58.195 33.333 0.00 0.00 43.42 3.07
7380 19627 8.525316 TCATCATAATGAACTTTTGCTTCATGT 58.475 29.630 0.00 0.00 38.97 3.21
7381 19628 9.791820 CATCATAATGAACTTTTGCTTCATGTA 57.208 29.630 0.00 0.00 38.19 2.29
7382 19629 9.793252 ATCATAATGAACTTTTGCTTCATGTAC 57.207 29.630 0.00 0.00 38.19 2.90
7383 19630 8.791675 TCATAATGAACTTTTGCTTCATGTACA 58.208 29.630 0.00 0.00 38.19 2.90
7384 19631 9.069078 CATAATGAACTTTTGCTTCATGTACAG 57.931 33.333 0.33 0.00 38.19 2.74
7385 19632 4.858935 TGAACTTTTGCTTCATGTACAGC 58.141 39.130 0.33 0.00 36.49 4.40
7386 19633 3.923017 ACTTTTGCTTCATGTACAGCC 57.077 42.857 0.33 0.00 34.91 4.85
7387 19634 3.221771 ACTTTTGCTTCATGTACAGCCA 58.778 40.909 0.33 0.00 34.91 4.75
7388 19635 3.636300 ACTTTTGCTTCATGTACAGCCAA 59.364 39.130 0.33 0.00 34.91 4.52
7389 19636 3.921119 TTTGCTTCATGTACAGCCAAG 57.079 42.857 0.33 4.42 34.91 3.61
7390 19637 2.857186 TGCTTCATGTACAGCCAAGA 57.143 45.000 13.00 0.00 34.91 3.02
7391 19638 3.138884 TGCTTCATGTACAGCCAAGAA 57.861 42.857 13.00 2.60 34.91 2.52
7392 19639 3.076621 TGCTTCATGTACAGCCAAGAAG 58.923 45.455 13.00 14.08 41.03 2.85
7393 19640 2.421424 GCTTCATGTACAGCCAAGAAGG 59.579 50.000 18.23 0.00 39.40 3.46
7394 19641 3.869912 GCTTCATGTACAGCCAAGAAGGA 60.870 47.826 18.23 0.00 39.40 3.36
7395 19642 4.326826 CTTCATGTACAGCCAAGAAGGAA 58.673 43.478 0.33 0.00 41.22 3.36
7396 19643 3.942829 TCATGTACAGCCAAGAAGGAAG 58.057 45.455 0.33 0.00 41.22 3.46
7397 19644 2.859165 TGTACAGCCAAGAAGGAAGG 57.141 50.000 0.00 0.00 41.22 3.46
7398 19645 2.054799 TGTACAGCCAAGAAGGAAGGT 58.945 47.619 0.00 0.00 41.22 3.50
7399 19646 2.441750 TGTACAGCCAAGAAGGAAGGTT 59.558 45.455 0.00 0.00 41.22 3.50
7400 19647 3.649023 TGTACAGCCAAGAAGGAAGGTTA 59.351 43.478 0.00 0.00 41.22 2.85
7401 19648 4.288626 TGTACAGCCAAGAAGGAAGGTTAT 59.711 41.667 0.00 0.00 41.22 1.89
7402 19649 5.486063 TGTACAGCCAAGAAGGAAGGTTATA 59.514 40.000 0.00 0.00 41.22 0.98
7403 19650 5.514500 ACAGCCAAGAAGGAAGGTTATAA 57.486 39.130 0.00 0.00 41.22 0.98
7422 19669 2.959507 ACAACCAACTGGCTTTTCAC 57.040 45.000 0.00 0.00 39.32 3.18
7424 19671 2.564947 ACAACCAACTGGCTTTTCACAA 59.435 40.909 0.00 0.00 39.32 3.33
7425 19672 3.197549 ACAACCAACTGGCTTTTCACAAT 59.802 39.130 0.00 0.00 39.32 2.71
7428 19675 3.450457 ACCAACTGGCTTTTCACAATCAA 59.550 39.130 0.00 0.00 39.32 2.57
7430 19677 4.508861 CCAACTGGCTTTTCACAATCAAAG 59.491 41.667 0.00 0.00 33.77 2.77
7431 19678 4.326504 ACTGGCTTTTCACAATCAAAGG 57.673 40.909 0.00 0.00 31.65 3.11
7432 19679 3.070015 ACTGGCTTTTCACAATCAAAGGG 59.930 43.478 0.00 0.00 31.65 3.95
7435 19682 3.573967 GGCTTTTCACAATCAAAGGGAGA 59.426 43.478 0.00 0.00 31.65 3.71
7436 19683 4.039124 GGCTTTTCACAATCAAAGGGAGAA 59.961 41.667 0.00 0.00 31.65 2.87
7437 19684 5.453198 GGCTTTTCACAATCAAAGGGAGAAA 60.453 40.000 0.00 0.00 31.65 2.52
7438 19685 6.048509 GCTTTTCACAATCAAAGGGAGAAAA 58.951 36.000 0.00 0.00 33.87 2.29
7439 19686 6.707608 GCTTTTCACAATCAAAGGGAGAAAAT 59.292 34.615 0.00 0.00 34.31 1.82
7440 19687 7.307573 GCTTTTCACAATCAAAGGGAGAAAATG 60.308 37.037 0.00 0.00 34.31 2.32
7441 19688 6.975196 TTCACAATCAAAGGGAGAAAATGA 57.025 33.333 0.00 0.00 0.00 2.57
7442 19689 6.579666 TCACAATCAAAGGGAGAAAATGAG 57.420 37.500 0.00 0.00 0.00 2.90
7443 19690 6.306199 TCACAATCAAAGGGAGAAAATGAGA 58.694 36.000 0.00 0.00 0.00 3.27
7444 19691 6.777091 TCACAATCAAAGGGAGAAAATGAGAA 59.223 34.615 0.00 0.00 0.00 2.87
7445 19692 7.040201 TCACAATCAAAGGGAGAAAATGAGAAG 60.040 37.037 0.00 0.00 0.00 2.85
7446 19693 5.911378 ATCAAAGGGAGAAAATGAGAAGC 57.089 39.130 0.00 0.00 0.00 3.86
7447 19694 4.728772 TCAAAGGGAGAAAATGAGAAGCA 58.271 39.130 0.00 0.00 0.00 3.91
7448 19695 4.763793 TCAAAGGGAGAAAATGAGAAGCAG 59.236 41.667 0.00 0.00 0.00 4.24
7449 19696 4.647564 AAGGGAGAAAATGAGAAGCAGA 57.352 40.909 0.00 0.00 0.00 4.26
7450 19697 4.647564 AGGGAGAAAATGAGAAGCAGAA 57.352 40.909 0.00 0.00 0.00 3.02
7451 19698 4.587891 AGGGAGAAAATGAGAAGCAGAAG 58.412 43.478 0.00 0.00 0.00 2.85
7452 19699 4.042684 AGGGAGAAAATGAGAAGCAGAAGT 59.957 41.667 0.00 0.00 0.00 3.01
7453 19700 4.764308 GGGAGAAAATGAGAAGCAGAAGTT 59.236 41.667 0.00 0.00 0.00 2.66
7454 19701 5.335504 GGGAGAAAATGAGAAGCAGAAGTTG 60.336 44.000 0.00 0.00 0.00 3.16
7468 19715 4.925068 CAGAAGTTGCAAAAACTACAGCT 58.075 39.130 0.00 0.00 0.00 4.24
7469 19716 5.343249 CAGAAGTTGCAAAAACTACAGCTT 58.657 37.500 0.00 0.00 37.53 3.74
7470 19717 5.456822 CAGAAGTTGCAAAAACTACAGCTTC 59.543 40.000 0.00 6.63 46.07 3.86
7471 19718 4.307443 AGTTGCAAAAACTACAGCTTCC 57.693 40.909 0.00 0.00 0.00 3.46
7472 19719 3.042887 GTTGCAAAAACTACAGCTTCCG 58.957 45.455 0.00 0.00 0.00 4.30
7473 19720 1.001815 TGCAAAAACTACAGCTTCCGC 60.002 47.619 0.00 0.00 0.00 5.54
7474 19721 1.950472 CAAAAACTACAGCTTCCGCG 58.050 50.000 0.00 0.00 42.32 6.46
7475 19722 1.263217 CAAAAACTACAGCTTCCGCGT 59.737 47.619 4.92 0.00 42.32 6.01
7476 19723 2.443887 AAAACTACAGCTTCCGCGTA 57.556 45.000 4.92 0.00 42.32 4.42
7477 19724 1.992170 AAACTACAGCTTCCGCGTAG 58.008 50.000 4.92 2.87 42.95 3.51
7478 19725 2.564471 ACTACAGCTTCCGCGTAGT 58.436 52.632 4.92 7.75 44.10 2.73
7479 19726 0.170561 ACTACAGCTTCCGCGTAGTG 59.829 55.000 11.79 6.03 45.52 2.74
7480 19727 0.170561 CTACAGCTTCCGCGTAGTGT 59.829 55.000 4.92 11.05 42.32 3.55
7481 19728 1.399440 CTACAGCTTCCGCGTAGTGTA 59.601 52.381 4.92 11.53 42.32 2.90
7482 19729 0.599558 ACAGCTTCCGCGTAGTGTAA 59.400 50.000 4.92 0.00 42.32 2.41
7483 19730 1.000060 ACAGCTTCCGCGTAGTGTAAA 60.000 47.619 4.92 0.00 42.32 2.01
7484 19731 2.268298 CAGCTTCCGCGTAGTGTAAAT 58.732 47.619 4.92 0.00 42.32 1.40
7485 19732 2.671396 CAGCTTCCGCGTAGTGTAAATT 59.329 45.455 4.92 0.00 42.32 1.82
7486 19733 3.124636 CAGCTTCCGCGTAGTGTAAATTT 59.875 43.478 4.92 0.00 42.32 1.82
7487 19734 3.370061 AGCTTCCGCGTAGTGTAAATTTC 59.630 43.478 4.92 0.00 42.32 2.17
7588 19835 2.997986 CCCAACTTCAGCAATGCATTTC 59.002 45.455 9.83 4.81 0.00 2.17
7594 19841 4.461781 ACTTCAGCAATGCATTTCTAGCTT 59.538 37.500 16.84 3.17 0.00 3.74
7595 19842 5.649395 ACTTCAGCAATGCATTTCTAGCTTA 59.351 36.000 16.84 8.77 0.00 3.09
7602 19908 7.011857 AGCAATGCATTTCTAGCTTAGTTCTAC 59.988 37.037 10.01 0.00 0.00 2.59
7605 19911 5.425539 TGCATTTCTAGCTTAGTTCTACCCT 59.574 40.000 0.00 0.00 0.00 4.34
7628 19934 1.079819 CAGCGATGTTCCTCCACGT 60.080 57.895 0.00 0.00 0.00 4.49
7652 19958 2.391389 GGCCTCGTCCTCGCAAAAG 61.391 63.158 0.00 0.00 36.96 2.27
7742 20048 2.847234 ACTGTTCCTCCACCGCCA 60.847 61.111 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 181 9.018582 TCAATTTTTGTTTGGGAGTTTGAAAAT 57.981 25.926 0.00 0.00 0.00 1.82
215 231 8.346476 TGTTTCCATTTAAAGAATTGTTCGTG 57.654 30.769 0.00 0.00 34.02 4.35
349 502 5.883115 TCTACAGGTTCACAAAATGTTCACA 59.117 36.000 0.00 0.00 0.00 3.58
387 542 8.865090 TGTTCCCATGTTAGTAAAAATGTTCAT 58.135 29.630 0.00 0.00 29.42 2.57
637 895 5.354234 GGTTCTTGAACTGAGTTTTCACTGA 59.646 40.000 12.44 0.00 32.65 3.41
702 991 1.147600 AGCGTCCGTTTTGGGAACT 59.852 52.632 0.00 0.00 37.96 3.01
705 995 0.320073 CTACAGCGTCCGTTTTGGGA 60.320 55.000 0.00 0.00 38.76 4.37
708 998 2.599082 GAGATCTACAGCGTCCGTTTTG 59.401 50.000 0.00 0.00 0.00 2.44
752 1052 3.423154 CAAAGGGCAGCGACCGAC 61.423 66.667 0.00 0.00 34.63 4.79
762 1062 2.982744 GAGGCTTCGCACAAAGGGC 61.983 63.158 0.00 0.00 0.00 5.19
767 1071 1.227409 TTGTCGAGGCTTCGCACAA 60.227 52.632 22.46 22.46 46.28 3.33
920 1224 4.215399 TCTTTTCGGTGGTTTTATGCTCAG 59.785 41.667 0.00 0.00 0.00 3.35
1249 1553 2.040813 AGATGGTGGTGTGAATCTGCTT 59.959 45.455 0.00 0.00 0.00 3.91
1302 1606 1.796017 TATTGGTATGGAGCCACGGA 58.204 50.000 0.00 0.00 35.46 4.69
1796 2103 1.020861 TGACTGACCGACATGCATGC 61.021 55.000 26.53 17.30 0.00 4.06
1870 2177 1.074775 CCCCCAGAATAGGTCGGGA 60.075 63.158 0.00 0.00 43.90 5.14
1914 2222 3.821421 AAGTGAACAGAAGAGAACCGT 57.179 42.857 0.00 0.00 0.00 4.83
1948 2256 1.129058 AACTTGGACTCCGGTTCAGT 58.871 50.000 0.00 0.00 31.82 3.41
2116 2424 7.986085 AAAAGATCTGTAGCACTTACATTGT 57.014 32.000 0.00 0.00 41.30 2.71
2147 2455 6.602406 AGAGCTGAAATTAGATGAACAAGCAT 59.398 34.615 0.00 0.00 0.00 3.79
2661 2969 3.639672 TGTGATCTGAGATGCACCATT 57.360 42.857 16.70 0.00 0.00 3.16
2695 3003 5.068591 GTGAACACAAAGGGATTGGTAGTTT 59.931 40.000 0.00 0.00 43.66 2.66
2884 3193 9.930158 AAAGGCCACCATAAATATAACTCTAAA 57.070 29.630 5.01 0.00 0.00 1.85
2917 3226 3.443045 CCACGGGCCAGAATGCAC 61.443 66.667 10.86 0.00 31.97 4.57
3080 3788 2.959357 GAGCTGCGACAACAGGCAC 61.959 63.158 0.00 0.00 38.16 5.01
3087 3795 1.219124 GATGAGGGAGCTGCGACAA 59.781 57.895 0.00 0.00 0.00 3.18
3136 3847 2.319844 TCTTGAGAGGAGACAACAGCA 58.680 47.619 0.00 0.00 0.00 4.41
3335 6386 6.115446 TGAAGCGTCAAATAATCAGGAGAAT 58.885 36.000 0.00 0.00 0.00 2.40
3389 6440 2.255252 CGAGGGGCAAGCAAAACG 59.745 61.111 0.00 0.00 0.00 3.60
3442 6493 6.401394 TCATCACTGTATCCAAGAAAGACAG 58.599 40.000 0.00 0.00 42.58 3.51
3534 6586 4.277672 CGGGTAGAAAGGACGAGATTCATA 59.722 45.833 0.00 0.00 0.00 2.15
3866 6949 5.189928 ACACACCAAAAGTAAGATGACACA 58.810 37.500 0.00 0.00 0.00 3.72
3867 6950 5.295787 TGACACACCAAAAGTAAGATGACAC 59.704 40.000 0.00 0.00 0.00 3.67
3868 6951 5.432645 TGACACACCAAAAGTAAGATGACA 58.567 37.500 0.00 0.00 0.00 3.58
3869 6952 6.428159 AGATGACACACCAAAAGTAAGATGAC 59.572 38.462 0.00 0.00 0.00 3.06
3870 6953 6.533730 AGATGACACACCAAAAGTAAGATGA 58.466 36.000 0.00 0.00 0.00 2.92
3871 6954 6.808008 AGATGACACACCAAAAGTAAGATG 57.192 37.500 0.00 0.00 0.00 2.90
3872 6955 6.431234 GGAAGATGACACACCAAAAGTAAGAT 59.569 38.462 0.00 0.00 0.00 2.40
3873 6956 5.763204 GGAAGATGACACACCAAAAGTAAGA 59.237 40.000 0.00 0.00 0.00 2.10
3874 6957 5.765182 AGGAAGATGACACACCAAAAGTAAG 59.235 40.000 0.00 0.00 0.00 2.34
3875 6958 5.690865 AGGAAGATGACACACCAAAAGTAA 58.309 37.500 0.00 0.00 0.00 2.24
3876 6959 5.304686 AGGAAGATGACACACCAAAAGTA 57.695 39.130 0.00 0.00 0.00 2.24
3877 6960 4.137543 GAGGAAGATGACACACCAAAAGT 58.862 43.478 0.00 0.00 0.00 2.66
3878 6961 3.503748 GGAGGAAGATGACACACCAAAAG 59.496 47.826 0.00 0.00 0.00 2.27
3879 6962 3.138283 AGGAGGAAGATGACACACCAAAA 59.862 43.478 0.00 0.00 0.00 2.44
3880 6963 2.711009 AGGAGGAAGATGACACACCAAA 59.289 45.455 0.00 0.00 0.00 3.28
3881 6964 2.303022 GAGGAGGAAGATGACACACCAA 59.697 50.000 0.00 0.00 0.00 3.67
3882 6965 1.902508 GAGGAGGAAGATGACACACCA 59.097 52.381 0.00 0.00 0.00 4.17
3883 6966 2.167487 GAGAGGAGGAAGATGACACACC 59.833 54.545 0.00 0.00 0.00 4.16
3884 6967 2.828520 TGAGAGGAGGAAGATGACACAC 59.171 50.000 0.00 0.00 0.00 3.82
3954 7058 2.675317 CGAAAGACCAAAGCGAGGAGAT 60.675 50.000 0.00 0.00 0.00 2.75
3958 7065 3.210857 TCGAAAGACCAAAGCGAGG 57.789 52.632 0.00 0.00 33.31 4.63
4039 7146 2.045926 GGCGGCAATCTCCACTGT 60.046 61.111 3.07 0.00 0.00 3.55
4043 7150 1.678635 CAAAGGGCGGCAATCTCCA 60.679 57.895 12.47 0.00 0.00 3.86
4074 7181 0.984230 AAGAGAAACCAGATCCCGCA 59.016 50.000 0.00 0.00 0.00 5.69
4076 7183 1.834263 AGGAAGAGAAACCAGATCCCG 59.166 52.381 0.00 0.00 0.00 5.14
4100 7220 3.786368 TCAAGTGATGGGATGAACACA 57.214 42.857 0.00 0.00 35.97 3.72
4149 8440 5.220710 AGACACAGTAGCAGAAAGTGAAT 57.779 39.130 0.00 0.00 34.47 2.57
4208 8500 5.007136 TCAAACGGGAAATTGCAATTTGTTC 59.993 36.000 35.57 23.47 38.64 3.18
4452 8744 4.701765 AGGCACATACTGAAGAGCAATAG 58.298 43.478 0.00 0.00 0.00 1.73
4484 8778 3.512680 CTTCGTGAAGAAATCCGCTAGT 58.487 45.455 3.49 0.00 40.79 2.57
5024 9318 2.282462 AGGAGGCAAAAGCCACCG 60.282 61.111 15.58 0.00 43.80 4.94
5026 9320 2.128771 TATCAGGAGGCAAAAGCCAC 57.871 50.000 9.42 2.08 0.00 5.01
5089 9383 4.511786 AGAGGCTAGTGTATCAGAGTCA 57.488 45.455 0.00 0.00 0.00 3.41
5279 10807 2.576191 CAGGGAGGGTAATGTTGAGGAA 59.424 50.000 0.00 0.00 0.00 3.36
5432 10960 3.693085 CACCAGCATCTTTGAAGCTACAT 59.307 43.478 0.00 0.00 34.26 2.29
6086 11678 4.144297 CAAACTCCAAAGTCAATCCAGGA 58.856 43.478 0.00 0.00 33.48 3.86
6105 11699 3.443052 TCCGATGAACTACCCCTACAAA 58.557 45.455 0.00 0.00 0.00 2.83
6421 15769 7.096023 GCAGCATGTACAGTTGTATAGATACAC 60.096 40.741 0.33 0.00 39.85 2.90
7162 19409 0.038166 TTGACCAACCATCCAGGCTC 59.962 55.000 0.00 0.00 43.14 4.70
7214 19461 2.068837 AATTTGACCTGCATGCGTTG 57.931 45.000 14.09 6.28 0.00 4.10
7215 19462 2.297033 AGAAATTTGACCTGCATGCGTT 59.703 40.909 14.09 0.00 0.00 4.84
7216 19463 1.888512 AGAAATTTGACCTGCATGCGT 59.111 42.857 14.09 5.45 0.00 5.24
7217 19464 2.523015 GAGAAATTTGACCTGCATGCG 58.477 47.619 14.09 7.87 0.00 4.73
7218 19465 2.494870 AGGAGAAATTTGACCTGCATGC 59.505 45.455 11.82 11.82 0.00 4.06
7219 19466 4.106029 CAGGAGAAATTTGACCTGCATG 57.894 45.455 20.16 0.00 42.30 4.06
7224 19471 4.392940 CACAGACAGGAGAAATTTGACCT 58.607 43.478 0.00 0.92 0.00 3.85
7225 19472 3.057946 GCACAGACAGGAGAAATTTGACC 60.058 47.826 0.00 0.00 0.00 4.02
7226 19473 3.817647 AGCACAGACAGGAGAAATTTGAC 59.182 43.478 0.00 0.00 0.00 3.18
7227 19474 4.067896 GAGCACAGACAGGAGAAATTTGA 58.932 43.478 0.00 0.00 0.00 2.69
7228 19475 3.817084 TGAGCACAGACAGGAGAAATTTG 59.183 43.478 0.00 0.00 0.00 2.32
7229 19476 4.090761 TGAGCACAGACAGGAGAAATTT 57.909 40.909 0.00 0.00 0.00 1.82
7230 19477 3.777106 TGAGCACAGACAGGAGAAATT 57.223 42.857 0.00 0.00 0.00 1.82
7231 19478 3.370315 GGATGAGCACAGACAGGAGAAAT 60.370 47.826 0.00 0.00 0.00 2.17
7232 19479 2.027745 GGATGAGCACAGACAGGAGAAA 60.028 50.000 0.00 0.00 0.00 2.52
7233 19480 1.552337 GGATGAGCACAGACAGGAGAA 59.448 52.381 0.00 0.00 0.00 2.87
7234 19481 1.189752 GGATGAGCACAGACAGGAGA 58.810 55.000 0.00 0.00 0.00 3.71
7235 19482 0.177604 GGGATGAGCACAGACAGGAG 59.822 60.000 0.00 0.00 0.00 3.69
7236 19483 0.545071 TGGGATGAGCACAGACAGGA 60.545 55.000 0.00 0.00 0.00 3.86
7237 19484 0.392193 GTGGGATGAGCACAGACAGG 60.392 60.000 0.00 0.00 0.00 4.00
7238 19485 0.322648 TGTGGGATGAGCACAGACAG 59.677 55.000 0.00 0.00 0.00 3.51
7239 19486 0.035317 GTGTGGGATGAGCACAGACA 59.965 55.000 0.00 0.00 43.32 3.41
7240 19487 1.016130 CGTGTGGGATGAGCACAGAC 61.016 60.000 0.00 0.00 40.60 3.51
7241 19488 1.293179 CGTGTGGGATGAGCACAGA 59.707 57.895 0.00 0.00 33.70 3.41
7242 19489 2.393768 GCGTGTGGGATGAGCACAG 61.394 63.158 0.00 0.00 33.70 3.66
7243 19490 2.358615 GCGTGTGGGATGAGCACA 60.359 61.111 0.00 0.00 33.70 4.57
7244 19491 2.829043 TACGCGTGTGGGATGAGCAC 62.829 60.000 24.59 0.00 0.00 4.40
7245 19492 2.641277 TACGCGTGTGGGATGAGCA 61.641 57.895 24.59 0.00 0.00 4.26
7246 19493 2.165301 GTACGCGTGTGGGATGAGC 61.165 63.158 24.59 0.00 0.00 4.26
7247 19494 1.076533 GTGTACGCGTGTGGGATGAG 61.077 60.000 24.59 0.00 0.00 2.90
7248 19495 1.080366 GTGTACGCGTGTGGGATGA 60.080 57.895 24.59 0.00 0.00 2.92
7249 19496 2.098233 GGTGTACGCGTGTGGGATG 61.098 63.158 24.59 0.00 0.00 3.51
7250 19497 2.263540 GGTGTACGCGTGTGGGAT 59.736 61.111 24.59 0.00 0.00 3.85
7251 19498 4.345962 CGGTGTACGCGTGTGGGA 62.346 66.667 24.59 0.00 34.82 4.37
7261 19508 6.970613 AGAACTTTTGAATGAAAACGGTGTAC 59.029 34.615 0.00 0.00 30.13 2.90
7262 19509 7.090953 AGAACTTTTGAATGAAAACGGTGTA 57.909 32.000 0.00 0.00 30.13 2.90
7263 19510 5.961272 AGAACTTTTGAATGAAAACGGTGT 58.039 33.333 0.00 0.00 30.13 4.16
7264 19511 6.885735 AAGAACTTTTGAATGAAAACGGTG 57.114 33.333 0.00 0.00 30.13 4.94
7265 19512 8.865978 GTTTAAGAACTTTTGAATGAAAACGGT 58.134 29.630 0.00 0.00 32.91 4.83
7266 19513 9.083080 AGTTTAAGAACTTTTGAATGAAAACGG 57.917 29.630 0.00 0.00 43.48 4.44
7272 19519 9.691362 GCCATTAGTTTAAGAACTTTTGAATGA 57.309 29.630 11.32 0.00 43.48 2.57
7273 19520 8.925700 GGCCATTAGTTTAAGAACTTTTGAATG 58.074 33.333 0.00 2.34 43.48 2.67
7274 19521 8.870116 AGGCCATTAGTTTAAGAACTTTTGAAT 58.130 29.630 5.01 0.00 43.48 2.57
7275 19522 8.245195 AGGCCATTAGTTTAAGAACTTTTGAA 57.755 30.769 5.01 0.00 43.48 2.69
7276 19523 7.833285 AGGCCATTAGTTTAAGAACTTTTGA 57.167 32.000 5.01 0.00 43.48 2.69
7277 19524 9.626045 CTAAGGCCATTAGTTTAAGAACTTTTG 57.374 33.333 5.01 0.00 43.48 2.44
7278 19525 8.803235 CCTAAGGCCATTAGTTTAAGAACTTTT 58.197 33.333 5.01 0.00 43.48 2.27
7279 19526 7.948447 ACCTAAGGCCATTAGTTTAAGAACTTT 59.052 33.333 5.01 0.00 43.48 2.66
7280 19527 7.467650 ACCTAAGGCCATTAGTTTAAGAACTT 58.532 34.615 5.01 0.00 43.48 2.66
7282 19529 8.975663 ATACCTAAGGCCATTAGTTTAAGAAC 57.024 34.615 5.01 0.00 39.50 3.01
7284 19531 9.216148 TGTATACCTAAGGCCATTAGTTTAAGA 57.784 33.333 5.01 0.00 39.50 2.10
7287 19534 9.161572 TGATGTATACCTAAGGCCATTAGTTTA 57.838 33.333 5.01 4.63 39.50 2.01
7288 19535 8.041143 TGATGTATACCTAAGGCCATTAGTTT 57.959 34.615 5.01 2.62 39.50 2.66
7289 19536 7.626999 TGATGTATACCTAAGGCCATTAGTT 57.373 36.000 5.01 1.38 39.50 2.24
7290 19537 7.626999 TTGATGTATACCTAAGGCCATTAGT 57.373 36.000 5.01 0.00 39.50 2.24
7291 19538 8.103305 ACATTGATGTATACCTAAGGCCATTAG 58.897 37.037 5.01 10.08 39.68 1.73
7292 19539 7.984475 ACATTGATGTATACCTAAGGCCATTA 58.016 34.615 5.01 0.00 39.68 1.90
7293 19540 6.852404 ACATTGATGTATACCTAAGGCCATT 58.148 36.000 5.01 0.00 39.68 3.16
7294 19541 6.454223 ACATTGATGTATACCTAAGGCCAT 57.546 37.500 5.01 0.00 39.68 4.40
7295 19542 5.904984 ACATTGATGTATACCTAAGGCCA 57.095 39.130 5.01 0.00 39.68 5.36
7296 19543 6.062095 ACAACATTGATGTATACCTAAGGCC 58.938 40.000 0.00 0.00 40.80 5.19
7297 19544 7.067008 ACAACAACATTGATGTATACCTAAGGC 59.933 37.037 5.79 0.00 41.53 4.35
7298 19545 8.506168 ACAACAACATTGATGTATACCTAAGG 57.494 34.615 5.79 0.00 41.53 2.69
7299 19546 9.773328 CAACAACAACATTGATGTATACCTAAG 57.227 33.333 7.81 0.00 42.33 2.18
7300 19547 8.735315 CCAACAACAACATTGATGTATACCTAA 58.265 33.333 7.81 0.00 42.33 2.69
7301 19548 7.338196 CCCAACAACAACATTGATGTATACCTA 59.662 37.037 7.81 0.00 42.33 3.08
7302 19549 6.152661 CCCAACAACAACATTGATGTATACCT 59.847 38.462 7.81 0.00 42.33 3.08
7303 19550 6.071616 ACCCAACAACAACATTGATGTATACC 60.072 38.462 7.81 0.00 42.33 2.73
7304 19551 6.919721 ACCCAACAACAACATTGATGTATAC 58.080 36.000 7.81 0.00 42.33 1.47
7305 19552 7.374272 CAACCCAACAACAACATTGATGTATA 58.626 34.615 7.81 0.00 42.33 1.47
7306 19553 6.222389 CAACCCAACAACAACATTGATGTAT 58.778 36.000 7.81 0.00 42.33 2.29
7307 19554 5.595885 CAACCCAACAACAACATTGATGTA 58.404 37.500 7.81 0.00 42.33 2.29
7308 19555 4.440880 CAACCCAACAACAACATTGATGT 58.559 39.130 1.99 1.99 44.58 3.06
7309 19556 3.248125 GCAACCCAACAACAACATTGATG 59.752 43.478 0.00 0.00 37.05 3.07
7310 19557 3.134442 AGCAACCCAACAACAACATTGAT 59.866 39.130 0.00 0.00 0.00 2.57
7311 19558 2.499289 AGCAACCCAACAACAACATTGA 59.501 40.909 0.00 0.00 0.00 2.57
7312 19559 2.903798 AGCAACCCAACAACAACATTG 58.096 42.857 0.00 0.00 0.00 2.82
7313 19560 3.625649 AAGCAACCCAACAACAACATT 57.374 38.095 0.00 0.00 0.00 2.71
7314 19561 3.069443 CCTAAGCAACCCAACAACAACAT 59.931 43.478 0.00 0.00 0.00 2.71
7315 19562 2.428890 CCTAAGCAACCCAACAACAACA 59.571 45.455 0.00 0.00 0.00 3.33
7316 19563 2.223947 CCCTAAGCAACCCAACAACAAC 60.224 50.000 0.00 0.00 0.00 3.32
7317 19564 2.035632 CCCTAAGCAACCCAACAACAA 58.964 47.619 0.00 0.00 0.00 2.83
7318 19565 1.698506 CCCTAAGCAACCCAACAACA 58.301 50.000 0.00 0.00 0.00 3.33
7319 19566 0.317160 GCCCTAAGCAACCCAACAAC 59.683 55.000 0.00 0.00 42.97 3.32
7320 19567 0.830023 GGCCCTAAGCAACCCAACAA 60.830 55.000 0.00 0.00 46.50 2.83
7321 19568 1.228737 GGCCCTAAGCAACCCAACA 60.229 57.895 0.00 0.00 46.50 3.33
7322 19569 0.541998 AAGGCCCTAAGCAACCCAAC 60.542 55.000 0.00 0.00 46.50 3.77
7323 19570 0.541764 CAAGGCCCTAAGCAACCCAA 60.542 55.000 0.00 0.00 46.50 4.12
7324 19571 1.076549 CAAGGCCCTAAGCAACCCA 59.923 57.895 0.00 0.00 46.50 4.51
7325 19572 1.682344 CCAAGGCCCTAAGCAACCC 60.682 63.158 0.00 0.00 46.50 4.11
7326 19573 0.033109 ATCCAAGGCCCTAAGCAACC 60.033 55.000 0.00 0.00 46.50 3.77
7327 19574 1.106285 CATCCAAGGCCCTAAGCAAC 58.894 55.000 0.00 0.00 46.50 4.17
7328 19575 0.998928 TCATCCAAGGCCCTAAGCAA 59.001 50.000 0.00 0.00 46.50 3.91
7329 19576 0.548031 CTCATCCAAGGCCCTAAGCA 59.452 55.000 0.00 0.00 46.50 3.91
7330 19577 0.548510 ACTCATCCAAGGCCCTAAGC 59.451 55.000 0.00 0.00 42.60 3.09
7331 19578 3.041946 AGTACTCATCCAAGGCCCTAAG 58.958 50.000 0.00 0.00 0.00 2.18
7332 19579 2.771943 CAGTACTCATCCAAGGCCCTAA 59.228 50.000 0.00 0.00 0.00 2.69
7333 19580 2.292918 ACAGTACTCATCCAAGGCCCTA 60.293 50.000 0.00 0.00 0.00 3.53
7334 19581 1.207791 CAGTACTCATCCAAGGCCCT 58.792 55.000 0.00 0.00 0.00 5.19
7335 19582 0.912486 ACAGTACTCATCCAAGGCCC 59.088 55.000 0.00 0.00 0.00 5.80
7336 19583 1.555075 TGACAGTACTCATCCAAGGCC 59.445 52.381 0.00 0.00 0.00 5.19
7337 19584 3.118629 TGATGACAGTACTCATCCAAGGC 60.119 47.826 17.78 0.00 44.19 4.35
7338 19585 4.743057 TGATGACAGTACTCATCCAAGG 57.257 45.455 17.78 0.00 44.19 3.61
7339 19586 8.146412 TCATTATGATGACAGTACTCATCCAAG 58.854 37.037 17.78 7.65 44.19 3.61
7340 19587 8.021898 TCATTATGATGACAGTACTCATCCAA 57.978 34.615 17.78 13.40 44.19 3.53
7341 19588 7.601705 TCATTATGATGACAGTACTCATCCA 57.398 36.000 17.78 9.65 44.19 3.41
7342 19589 8.147058 AGTTCATTATGATGACAGTACTCATCC 58.853 37.037 17.78 4.90 44.19 3.51
7343 19590 9.539825 AAGTTCATTATGATGACAGTACTCATC 57.460 33.333 15.02 15.02 44.79 2.92
7344 19591 9.896645 AAAGTTCATTATGATGACAGTACTCAT 57.103 29.630 0.00 0.00 41.84 2.90
7345 19592 9.725019 AAAAGTTCATTATGATGACAGTACTCA 57.275 29.630 0.00 0.00 41.84 3.41
7346 19593 9.979270 CAAAAGTTCATTATGATGACAGTACTC 57.021 33.333 0.00 0.00 41.84 2.59
7347 19594 8.454106 GCAAAAGTTCATTATGATGACAGTACT 58.546 33.333 0.00 0.00 41.84 2.73
7348 19595 8.454106 AGCAAAAGTTCATTATGATGACAGTAC 58.546 33.333 0.00 0.00 41.84 2.73
7349 19596 8.565896 AGCAAAAGTTCATTATGATGACAGTA 57.434 30.769 0.00 0.00 41.84 2.74
7350 19597 7.458409 AGCAAAAGTTCATTATGATGACAGT 57.542 32.000 0.00 0.00 41.84 3.55
7351 19598 8.024865 TGAAGCAAAAGTTCATTATGATGACAG 58.975 33.333 0.00 0.00 41.84 3.51
7352 19599 7.884257 TGAAGCAAAAGTTCATTATGATGACA 58.116 30.769 0.00 0.00 41.84 3.58
7353 19600 8.804743 CATGAAGCAAAAGTTCATTATGATGAC 58.195 33.333 0.00 0.00 41.69 3.06
7354 19601 8.525316 ACATGAAGCAAAAGTTCATTATGATGA 58.475 29.630 0.00 0.00 41.69 2.92
7355 19602 8.697846 ACATGAAGCAAAAGTTCATTATGATG 57.302 30.769 0.00 0.00 41.69 3.07
7356 19603 9.793252 GTACATGAAGCAAAAGTTCATTATGAT 57.207 29.630 0.00 0.00 41.69 2.45
7357 19604 8.791675 TGTACATGAAGCAAAAGTTCATTATGA 58.208 29.630 0.00 0.00 41.69 2.15
7358 19605 8.969121 TGTACATGAAGCAAAAGTTCATTATG 57.031 30.769 0.00 0.00 41.69 1.90
7359 19606 7.756722 GCTGTACATGAAGCAAAAGTTCATTAT 59.243 33.333 0.00 0.00 41.69 1.28
7360 19607 7.083858 GCTGTACATGAAGCAAAAGTTCATTA 58.916 34.615 0.00 0.00 41.69 1.90
7361 19608 5.922544 GCTGTACATGAAGCAAAAGTTCATT 59.077 36.000 0.00 0.00 41.69 2.57
7362 19609 5.464168 GCTGTACATGAAGCAAAAGTTCAT 58.536 37.500 0.00 0.00 43.90 2.57
7363 19610 4.261572 GGCTGTACATGAAGCAAAAGTTCA 60.262 41.667 17.29 0.00 41.36 3.18
7364 19611 4.229876 GGCTGTACATGAAGCAAAAGTTC 58.770 43.478 17.29 0.00 41.36 3.01
7365 19612 3.636300 TGGCTGTACATGAAGCAAAAGTT 59.364 39.130 17.29 0.00 41.36 2.66
7366 19613 3.221771 TGGCTGTACATGAAGCAAAAGT 58.778 40.909 17.29 0.00 41.36 2.66
7367 19614 3.921119 TGGCTGTACATGAAGCAAAAG 57.079 42.857 17.29 0.85 41.36 2.27
7368 19615 3.888323 TCTTGGCTGTACATGAAGCAAAA 59.112 39.130 17.29 11.66 41.36 2.44
7369 19616 3.485394 TCTTGGCTGTACATGAAGCAAA 58.515 40.909 17.29 12.98 41.36 3.68
7370 19617 3.138884 TCTTGGCTGTACATGAAGCAA 57.861 42.857 17.29 7.27 41.36 3.91
7371 19618 2.857186 TCTTGGCTGTACATGAAGCA 57.143 45.000 17.29 5.60 41.36 3.91
7372 19619 2.421424 CCTTCTTGGCTGTACATGAAGC 59.579 50.000 0.00 5.46 44.67 3.86
7373 19620 3.942829 TCCTTCTTGGCTGTACATGAAG 58.057 45.455 0.00 16.03 45.16 3.02
7374 19621 4.326826 CTTCCTTCTTGGCTGTACATGAA 58.673 43.478 0.00 0.00 34.57 2.57
7375 19622 3.307691 CCTTCCTTCTTGGCTGTACATGA 60.308 47.826 0.00 0.00 35.26 3.07
7376 19623 3.012518 CCTTCCTTCTTGGCTGTACATG 58.987 50.000 0.00 0.00 35.26 3.21
7377 19624 2.644798 ACCTTCCTTCTTGGCTGTACAT 59.355 45.455 0.00 0.00 35.26 2.29
7378 19625 2.054799 ACCTTCCTTCTTGGCTGTACA 58.945 47.619 0.00 0.00 35.26 2.90
7379 19626 2.861147 ACCTTCCTTCTTGGCTGTAC 57.139 50.000 0.00 0.00 35.26 2.90
7380 19627 6.013206 TGTTATAACCTTCCTTCTTGGCTGTA 60.013 38.462 13.01 0.00 35.26 2.74
7381 19628 5.222048 TGTTATAACCTTCCTTCTTGGCTGT 60.222 40.000 13.01 0.00 35.26 4.40
7382 19629 5.253330 TGTTATAACCTTCCTTCTTGGCTG 58.747 41.667 13.01 0.00 35.26 4.85
7383 19630 5.514500 TGTTATAACCTTCCTTCTTGGCT 57.486 39.130 13.01 0.00 35.26 4.75
7384 19631 5.105877 GGTTGTTATAACCTTCCTTCTTGGC 60.106 44.000 13.01 0.00 37.34 4.52
7385 19632 6.007703 TGGTTGTTATAACCTTCCTTCTTGG 58.992 40.000 13.01 0.00 40.88 3.61
7386 19633 7.230712 AGTTGGTTGTTATAACCTTCCTTCTTG 59.769 37.037 13.01 0.00 40.88 3.02
7387 19634 7.230712 CAGTTGGTTGTTATAACCTTCCTTCTT 59.769 37.037 13.01 0.00 40.88 2.52
7388 19635 6.715264 CAGTTGGTTGTTATAACCTTCCTTCT 59.285 38.462 13.01 10.81 40.88 2.85
7389 19636 6.072119 CCAGTTGGTTGTTATAACCTTCCTTC 60.072 42.308 13.01 9.23 40.88 3.46
7390 19637 5.773176 CCAGTTGGTTGTTATAACCTTCCTT 59.227 40.000 13.01 1.83 40.88 3.36
7391 19638 5.321927 CCAGTTGGTTGTTATAACCTTCCT 58.678 41.667 13.01 2.82 40.88 3.36
7392 19639 4.082408 GCCAGTTGGTTGTTATAACCTTCC 60.082 45.833 13.01 12.08 40.88 3.46
7393 19640 4.765339 AGCCAGTTGGTTGTTATAACCTTC 59.235 41.667 13.01 5.38 40.88 3.46
7394 19641 4.736473 AGCCAGTTGGTTGTTATAACCTT 58.264 39.130 13.01 0.00 40.88 3.50
7395 19642 4.382386 AGCCAGTTGGTTGTTATAACCT 57.618 40.909 13.01 0.00 40.88 3.50
7396 19643 5.462530 AAAGCCAGTTGGTTGTTATAACC 57.537 39.130 13.01 3.83 40.67 2.85
7397 19644 6.419710 GTGAAAAGCCAGTTGGTTGTTATAAC 59.580 38.462 8.75 8.75 37.57 1.89
7398 19645 6.096987 TGTGAAAAGCCAGTTGGTTGTTATAA 59.903 34.615 0.00 0.00 37.57 0.98
7399 19646 5.594725 TGTGAAAAGCCAGTTGGTTGTTATA 59.405 36.000 0.00 0.00 37.57 0.98
7400 19647 4.404073 TGTGAAAAGCCAGTTGGTTGTTAT 59.596 37.500 0.00 0.00 37.57 1.89
7401 19648 3.764434 TGTGAAAAGCCAGTTGGTTGTTA 59.236 39.130 0.00 0.00 37.57 2.41
7402 19649 2.564947 TGTGAAAAGCCAGTTGGTTGTT 59.435 40.909 0.00 0.00 37.57 2.83
7403 19650 2.175202 TGTGAAAAGCCAGTTGGTTGT 58.825 42.857 0.00 0.00 37.57 3.32
7422 19669 6.098017 GCTTCTCATTTTCTCCCTTTGATTG 58.902 40.000 0.00 0.00 0.00 2.67
7424 19671 5.327732 TGCTTCTCATTTTCTCCCTTTGAT 58.672 37.500 0.00 0.00 0.00 2.57
7425 19672 4.728772 TGCTTCTCATTTTCTCCCTTTGA 58.271 39.130 0.00 0.00 0.00 2.69
7428 19675 4.647564 TCTGCTTCTCATTTTCTCCCTT 57.352 40.909 0.00 0.00 0.00 3.95
7430 19677 4.331108 ACTTCTGCTTCTCATTTTCTCCC 58.669 43.478 0.00 0.00 0.00 4.30
7431 19678 5.697826 CAACTTCTGCTTCTCATTTTCTCC 58.302 41.667 0.00 0.00 0.00 3.71
7446 19693 4.925068 AGCTGTAGTTTTTGCAACTTCTG 58.075 39.130 0.00 0.00 0.00 3.02
7447 19694 5.450550 GGAAGCTGTAGTTTTTGCAACTTCT 60.451 40.000 15.79 9.83 41.50 2.85
7448 19695 4.740205 GGAAGCTGTAGTTTTTGCAACTTC 59.260 41.667 0.00 5.39 41.23 3.01
7449 19696 4.682787 GGAAGCTGTAGTTTTTGCAACTT 58.317 39.130 0.00 0.00 31.64 2.66
7450 19697 3.243068 CGGAAGCTGTAGTTTTTGCAACT 60.243 43.478 0.00 0.00 0.00 3.16
7451 19698 3.042887 CGGAAGCTGTAGTTTTTGCAAC 58.957 45.455 0.00 0.00 0.00 4.17
7452 19699 3.347958 CGGAAGCTGTAGTTTTTGCAA 57.652 42.857 0.00 0.00 0.00 4.08
7467 19714 4.914312 TGAAATTTACACTACGCGGAAG 57.086 40.909 12.47 10.39 0.00 3.46
7468 19715 4.083908 GGTTGAAATTTACACTACGCGGAA 60.084 41.667 12.47 0.00 0.00 4.30
7469 19716 3.432933 GGTTGAAATTTACACTACGCGGA 59.567 43.478 12.47 0.00 0.00 5.54
7470 19717 3.186817 TGGTTGAAATTTACACTACGCGG 59.813 43.478 12.47 0.00 0.00 6.46
7471 19718 4.392619 TGGTTGAAATTTACACTACGCG 57.607 40.909 3.53 3.53 0.00 6.01
7472 19719 5.627780 CCTTTGGTTGAAATTTACACTACGC 59.372 40.000 0.00 0.00 0.00 4.42
7473 19720 6.016943 TCCCTTTGGTTGAAATTTACACTACG 60.017 38.462 0.00 0.00 0.00 3.51
7474 19721 7.229907 TCTCCCTTTGGTTGAAATTTACACTAC 59.770 37.037 0.00 0.00 0.00 2.73
7475 19722 7.291566 TCTCCCTTTGGTTGAAATTTACACTA 58.708 34.615 0.00 0.00 0.00 2.74
7476 19723 6.133356 TCTCCCTTTGGTTGAAATTTACACT 58.867 36.000 0.00 0.00 0.00 3.55
7477 19724 6.399639 TCTCCCTTTGGTTGAAATTTACAC 57.600 37.500 0.00 0.00 0.00 2.90
7478 19725 7.425224 TTTCTCCCTTTGGTTGAAATTTACA 57.575 32.000 0.00 0.00 33.61 2.41
7479 19726 8.773645 CATTTTCTCCCTTTGGTTGAAATTTAC 58.226 33.333 0.00 0.00 36.18 2.01
7480 19727 8.709308 TCATTTTCTCCCTTTGGTTGAAATTTA 58.291 29.630 0.00 0.00 36.18 1.40
7481 19728 7.572814 TCATTTTCTCCCTTTGGTTGAAATTT 58.427 30.769 0.00 0.00 36.18 1.82
7482 19729 7.071071 TCTCATTTTCTCCCTTTGGTTGAAATT 59.929 33.333 0.00 0.00 36.18 1.82
7483 19730 6.554605 TCTCATTTTCTCCCTTTGGTTGAAAT 59.445 34.615 0.00 0.00 36.18 2.17
7484 19731 5.896678 TCTCATTTTCTCCCTTTGGTTGAAA 59.103 36.000 0.00 0.00 35.26 2.69
7485 19732 5.454062 TCTCATTTTCTCCCTTTGGTTGAA 58.546 37.500 0.00 0.00 0.00 2.69
7486 19733 5.060427 TCTCATTTTCTCCCTTTGGTTGA 57.940 39.130 0.00 0.00 0.00 3.18
7487 19734 5.776744 CTTCTCATTTTCTCCCTTTGGTTG 58.223 41.667 0.00 0.00 0.00 3.77
7588 19835 3.637694 GGGTGAGGGTAGAACTAAGCTAG 59.362 52.174 0.00 0.00 0.00 3.42
7594 19841 1.861982 GCTGGGTGAGGGTAGAACTA 58.138 55.000 0.00 0.00 0.00 2.24
7595 19842 1.258445 CGCTGGGTGAGGGTAGAACT 61.258 60.000 0.00 0.00 0.00 3.01
7602 19908 1.450312 GAACATCGCTGGGTGAGGG 60.450 63.158 0.00 0.00 35.92 4.30
7605 19911 1.596934 GAGGAACATCGCTGGGTGA 59.403 57.895 0.00 0.00 0.00 4.02
7718 20024 2.432628 GGAGGAACAGTGCCGACG 60.433 66.667 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.