Multiple sequence alignment - TraesCS6B01G240900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G240900 chr6B 100.000 6197 0 0 1 6197 422647541 422653737 0.000000e+00 11444.0
1 TraesCS6B01G240900 chr6B 90.698 86 6 2 4059 4143 675621881 675621797 5.080000e-21 113.0
2 TraesCS6B01G240900 chr6B 97.436 39 1 0 4214 4252 533817210 533817248 4.010000e-07 67.6
3 TraesCS6B01G240900 chr6D 95.450 2901 76 19 1123 3999 270050022 270052890 0.000000e+00 4575.0
4 TraesCS6B01G240900 chr6D 95.103 1164 39 8 4277 5424 270053376 270054537 0.000000e+00 1818.0
5 TraesCS6B01G240900 chr6D 92.431 872 23 15 259 1102 270049104 270049960 0.000000e+00 1205.0
6 TraesCS6B01G240900 chr6D 91.293 758 33 13 5448 6197 270054602 270055334 0.000000e+00 1003.0
7 TraesCS6B01G240900 chr6D 89.474 152 16 0 97 248 390481238 390481389 6.340000e-45 193.0
8 TraesCS6B01G240900 chr6D 92.683 41 3 0 216 256 16233324 16233364 6.710000e-05 60.2
9 TraesCS6B01G240900 chr6A 90.628 2486 140 51 1547 3981 387286012 387283569 0.000000e+00 3214.0
10 TraesCS6B01G240900 chr6A 95.780 1161 37 4 4280 5430 387283405 387282247 0.000000e+00 1862.0
11 TraesCS6B01G240900 chr6A 94.967 755 32 6 5448 6197 387282191 387281438 0.000000e+00 1179.0
12 TraesCS6B01G240900 chr6A 94.148 769 25 5 342 1102 387287338 387286582 0.000000e+00 1153.0
13 TraesCS6B01G240900 chr6A 96.479 426 15 0 1123 1548 387286516 387286091 0.000000e+00 704.0
14 TraesCS6B01G240900 chr6A 84.106 151 23 1 98 248 613477948 613478097 1.800000e-30 145.0
15 TraesCS6B01G240900 chr6A 93.421 76 5 0 4142 4217 387283480 387283405 5.080000e-21 113.0
16 TraesCS6B01G240900 chr5D 84.014 294 29 10 5561 5840 445008253 445007964 3.680000e-67 267.0
17 TraesCS6B01G240900 chr5D 83.007 153 6 10 3992 4143 76220050 76219917 3.030000e-23 121.0
18 TraesCS6B01G240900 chr5D 80.132 151 23 1 99 249 91334273 91334416 8.500000e-19 106.0
19 TraesCS6B01G240900 chr5D 90.566 53 2 3 199 248 299811112 299811164 4.010000e-07 67.6
20 TraesCS6B01G240900 chr1B 83.673 294 30 10 5561 5840 680994877 680995166 1.710000e-65 261.0
21 TraesCS6B01G240900 chr1B 95.000 100 4 1 3996 4095 680560811 680560909 8.320000e-34 156.0
22 TraesCS6B01G240900 chr1B 82.383 193 19 7 5563 5743 539836828 539837017 2.990000e-33 154.0
23 TraesCS6B01G240900 chr1B 77.344 128 23 6 127 253 591509872 591509994 3.100000e-08 71.3
24 TraesCS6B01G240900 chr7A 83.219 292 29 13 5561 5840 576774635 576774352 3.710000e-62 250.0
25 TraesCS6B01G240900 chr7A 82.877 292 30 13 5561 5840 658277974 658278257 1.730000e-60 244.0
26 TraesCS6B01G240900 chr7A 85.526 152 22 0 97 248 175244680 175244529 6.430000e-35 159.0
27 TraesCS6B01G240900 chr7A 95.455 44 2 0 4210 4253 202847907 202847950 3.100000e-08 71.3
28 TraesCS6B01G240900 chr2D 81.818 297 52 2 3133 3428 437676790 437677085 1.330000e-61 248.0
29 TraesCS6B01G240900 chr2D 88.696 115 13 0 1842 1956 437675958 437676072 2.330000e-29 141.0
30 TraesCS6B01G240900 chr2D 95.890 73 2 1 3993 4065 407219853 407219782 3.920000e-22 117.0
31 TraesCS6B01G240900 chr2D 94.521 73 3 1 3993 4065 407220082 407220011 1.830000e-20 111.0
32 TraesCS6B01G240900 chr2D 88.172 93 5 5 4060 4148 449433147 449433057 8.500000e-19 106.0
33 TraesCS6B01G240900 chr2D 79.470 151 26 3 99 248 385384023 385383877 1.100000e-17 102.0
34 TraesCS6B01G240900 chr2B 81.481 297 53 2 3133 3428 514031401 514031696 6.210000e-60 243.0
35 TraesCS6B01G240900 chr2B 87.333 150 14 5 3998 4146 184655510 184655655 3.840000e-37 167.0
36 TraesCS6B01G240900 chr2B 89.565 115 12 0 1842 1956 514030566 514030680 5.010000e-31 147.0
37 TraesCS6B01G240900 chr2B 97.436 39 1 0 4214 4252 786128361 786128323 4.010000e-07 67.6
38 TraesCS6B01G240900 chr2A 80.399 301 56 3 3130 3428 551251464 551251165 6.250000e-55 226.0
39 TraesCS6B01G240900 chr2A 90.435 115 11 0 1842 1956 551252295 551252181 1.080000e-32 152.0
40 TraesCS6B01G240900 chr4D 85.430 151 19 3 96 245 74265605 74265753 2.990000e-33 154.0
41 TraesCS6B01G240900 chr4D 95.000 80 2 2 3986 4065 329005997 329006074 2.350000e-24 124.0
42 TraesCS6B01G240900 chr4D 95.122 41 2 0 4213 4253 5929878 5929838 1.440000e-06 65.8
43 TraesCS6B01G240900 chr4D 80.899 89 11 2 98 180 35595323 35595411 1.440000e-06 65.8
44 TraesCS6B01G240900 chr7D 83.125 160 24 2 97 256 89789332 89789488 6.480000e-30 143.0
45 TraesCS6B01G240900 chr7D 92.453 53 2 2 197 248 100740411 100740360 2.400000e-09 75.0
46 TraesCS6B01G240900 chr7D 85.294 68 4 1 4220 4281 9772046 9771979 1.440000e-06 65.8
47 TraesCS6B01G240900 chr7D 100.000 29 0 0 4253 4281 75063259 75063287 3.000000e-03 54.7
48 TraesCS6B01G240900 chr4B 85.235 149 10 6 3998 4143 481579333 481579194 6.480000e-30 143.0
49 TraesCS6B01G240900 chr4B 90.000 90 7 2 4059 4148 572830100 572830013 1.410000e-21 115.0
50 TraesCS6B01G240900 chr4B 91.803 61 5 0 4212 4272 622436319 622436379 1.110000e-12 86.1
51 TraesCS6B01G240900 chr4B 94.444 36 2 0 97 132 665770248 665770213 8.680000e-04 56.5
52 TraesCS6B01G240900 chr7B 84.667 150 14 7 3995 4143 427824477 427824618 2.330000e-29 141.0
53 TraesCS6B01G240900 chr7B 90.698 86 8 0 4059 4144 419038297 419038212 1.410000e-21 115.0
54 TraesCS6B01G240900 chr7B 100.000 29 0 0 4253 4281 19944334 19944362 3.000000e-03 54.7
55 TraesCS6B01G240900 chr5A 82.609 161 27 1 94 253 692060414 692060254 2.330000e-29 141.0
56 TraesCS6B01G240900 chr5A 79.874 159 28 4 97 253 609814372 609814528 5.080000e-21 113.0
57 TraesCS6B01G240900 chr5A 74.661 221 43 9 3218 3428 35659081 35659298 1.110000e-12 86.1
58 TraesCS6B01G240900 chr3B 84.868 152 2 10 3994 4144 115549646 115549515 3.900000e-27 134.0
59 TraesCS6B01G240900 chr3B 90.909 88 6 2 4060 4147 662797360 662797275 3.920000e-22 117.0
60 TraesCS6B01G240900 chr5B 90.000 90 5 2 4059 4144 542940020 542940109 5.080000e-21 113.0
61 TraesCS6B01G240900 chr5B 84.507 71 7 3 4214 4280 345466469 345466399 4.010000e-07 67.6
62 TraesCS6B01G240900 chrUn 79.114 158 26 5 98 253 314621213 314621061 1.100000e-17 102.0
63 TraesCS6B01G240900 chrUn 78.981 157 25 6 97 248 318851241 318851394 3.950000e-17 100.0
64 TraesCS6B01G240900 chrUn 89.552 67 7 0 4212 4278 60289206 60289140 1.110000e-12 86.1
65 TraesCS6B01G240900 chrUn 91.803 61 5 0 4212 4272 60348512 60348572 1.110000e-12 86.1
66 TraesCS6B01G240900 chrUn 94.444 36 2 0 97 132 277380218 277380253 8.680000e-04 56.5
67 TraesCS6B01G240900 chr3D 79.114 158 26 5 98 253 10806866 10806714 1.100000e-17 102.0
68 TraesCS6B01G240900 chr3D 79.114 158 26 5 98 253 10820193 10820041 1.100000e-17 102.0
69 TraesCS6B01G240900 chr3D 96.774 31 1 0 218 248 464323185 464323215 1.100000e-02 52.8
70 TraesCS6B01G240900 chr4A 97.674 43 1 0 4211 4253 48163648 48163606 2.400000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G240900 chr6B 422647541 422653737 6196 False 11444.000000 11444 100.000000 1 6197 1 chr6B.!!$F1 6196
1 TraesCS6B01G240900 chr6D 270049104 270055334 6230 False 2150.250000 4575 93.569250 259 6197 4 chr6D.!!$F3 5938
2 TraesCS6B01G240900 chr6A 387281438 387287338 5900 True 1370.833333 3214 94.237167 342 6197 6 chr6A.!!$R1 5855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 982 0.524414 GTGGGGTTGGATAACGTTGC 59.476 55.000 11.99 2.52 37.69 4.17 F
1131 1223 0.597568 TTTGCTGTCCTGGAATTGCG 59.402 50.000 0.00 0.00 0.00 4.85 F
1304 1396 1.060986 GTTGCTTTGCTTGTGTTGTGC 59.939 47.619 0.00 0.00 0.00 4.57 F
1918 2094 1.140852 TCGTTCTGGGATTATGGCCTG 59.859 52.381 3.32 0.00 0.00 4.85 F
3694 3928 0.693049 ATTCTCCTTGCGTTGTCCCT 59.307 50.000 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2462 2640 2.032799 TGACCGTGAATTTCTTGTGCAC 59.967 45.455 10.75 10.75 0.00 4.57 R
2575 2753 2.169144 TCCTGTGATAGTGCTCCATGTG 59.831 50.000 0.00 0.00 0.00 3.21 R
2816 2994 4.021894 ACTGCACTACTCAAGTTAGTCCTG 60.022 45.833 0.00 0.00 35.76 3.86 R
3917 4151 1.587547 TGTGCAGTGAACACGCATAA 58.412 45.000 19.90 12.78 40.64 1.90 R
5550 6334 0.107361 TGAGCCAGCTGGACATCATG 60.107 55.000 37.21 7.51 37.39 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.964476 AACCATATCTTAGTCAAATGTAGGTG 57.036 34.615 0.00 0.00 0.00 4.00
27 28 6.992715 ACCATATCTTAGTCAAATGTAGGTGC 59.007 38.462 0.00 0.00 0.00 5.01
28 29 6.146184 CCATATCTTAGTCAAATGTAGGTGCG 59.854 42.308 0.00 0.00 0.00 5.34
29 30 4.794278 TCTTAGTCAAATGTAGGTGCGA 57.206 40.909 0.00 0.00 0.00 5.10
30 31 4.744570 TCTTAGTCAAATGTAGGTGCGAG 58.255 43.478 0.00 0.00 0.00 5.03
31 32 1.726853 AGTCAAATGTAGGTGCGAGC 58.273 50.000 0.00 0.00 0.00 5.03
32 33 1.001974 AGTCAAATGTAGGTGCGAGCA 59.998 47.619 0.00 0.00 0.00 4.26
33 34 1.128692 GTCAAATGTAGGTGCGAGCAC 59.871 52.381 18.94 18.94 45.49 4.40
65 66 3.979101 TTTTTACCCGGAGACCGTAAT 57.021 42.857 0.73 0.00 46.80 1.89
66 67 3.979101 TTTTACCCGGAGACCGTAATT 57.021 42.857 0.73 0.00 46.80 1.40
67 68 3.979101 TTTACCCGGAGACCGTAATTT 57.021 42.857 0.73 0.00 46.80 1.82
68 69 5.413309 TTTTACCCGGAGACCGTAATTTA 57.587 39.130 0.73 0.00 46.80 1.40
69 70 5.413309 TTTACCCGGAGACCGTAATTTAA 57.587 39.130 0.73 0.00 46.80 1.52
70 71 3.251479 ACCCGGAGACCGTAATTTAAC 57.749 47.619 0.73 0.00 46.80 2.01
71 72 2.195922 CCCGGAGACCGTAATTTAACG 58.804 52.381 0.73 0.00 46.80 3.18
144 145 8.251750 TGTGTTCTAAGTATTGCACATCTAAC 57.748 34.615 0.00 0.00 32.79 2.34
145 146 8.094548 TGTGTTCTAAGTATTGCACATCTAACT 58.905 33.333 0.00 0.00 32.79 2.24
146 147 8.596380 GTGTTCTAAGTATTGCACATCTAACTC 58.404 37.037 0.00 0.00 0.00 3.01
147 148 8.531982 TGTTCTAAGTATTGCACATCTAACTCT 58.468 33.333 0.00 0.00 0.00 3.24
148 149 9.372369 GTTCTAAGTATTGCACATCTAACTCTT 57.628 33.333 0.00 0.00 0.00 2.85
151 152 9.803315 CTAAGTATTGCACATCTAACTCTTACA 57.197 33.333 0.00 0.00 0.00 2.41
153 154 8.879342 AGTATTGCACATCTAACTCTTACATC 57.121 34.615 0.00 0.00 0.00 3.06
154 155 8.478066 AGTATTGCACATCTAACTCTTACATCA 58.522 33.333 0.00 0.00 0.00 3.07
155 156 9.265901 GTATTGCACATCTAACTCTTACATCAT 57.734 33.333 0.00 0.00 0.00 2.45
156 157 8.743085 ATTGCACATCTAACTCTTACATCATT 57.257 30.769 0.00 0.00 0.00 2.57
157 158 9.836864 ATTGCACATCTAACTCTTACATCATTA 57.163 29.630 0.00 0.00 0.00 1.90
158 159 9.665719 TTGCACATCTAACTCTTACATCATTAA 57.334 29.630 0.00 0.00 0.00 1.40
159 160 9.836864 TGCACATCTAACTCTTACATCATTAAT 57.163 29.630 0.00 0.00 0.00 1.40
189 190 8.547967 TGTTAAGATTCGAGCAACTATTTTCT 57.452 30.769 0.00 0.00 0.00 2.52
190 191 8.999431 TGTTAAGATTCGAGCAACTATTTTCTT 58.001 29.630 0.00 0.00 0.00 2.52
191 192 9.827411 GTTAAGATTCGAGCAACTATTTTCTTT 57.173 29.630 0.00 0.00 0.00 2.52
193 194 8.733857 AAGATTCGAGCAACTATTTTCTTTTG 57.266 30.769 0.00 0.00 0.00 2.44
194 195 7.875971 AGATTCGAGCAACTATTTTCTTTTGT 58.124 30.769 0.00 0.00 0.00 2.83
195 196 8.017946 AGATTCGAGCAACTATTTTCTTTTGTC 58.982 33.333 0.00 0.00 0.00 3.18
196 197 6.861065 TCGAGCAACTATTTTCTTTTGTCT 57.139 33.333 0.00 0.00 0.00 3.41
197 198 7.259290 TCGAGCAACTATTTTCTTTTGTCTT 57.741 32.000 0.00 0.00 0.00 3.01
198 199 7.703328 TCGAGCAACTATTTTCTTTTGTCTTT 58.297 30.769 0.00 0.00 0.00 2.52
199 200 8.832521 TCGAGCAACTATTTTCTTTTGTCTTTA 58.167 29.630 0.00 0.00 0.00 1.85
200 201 9.612620 CGAGCAACTATTTTCTTTTGTCTTTAT 57.387 29.630 0.00 0.00 0.00 1.40
240 241 9.013229 AGTTTAATTGAGTCATTTAGATGTGCA 57.987 29.630 7.37 0.00 34.77 4.57
241 242 9.624697 GTTTAATTGAGTCATTTAGATGTGCAA 57.375 29.630 7.37 0.00 34.77 4.08
245 246 9.793252 AATTGAGTCATTTAGATGTGCAATAAC 57.207 29.630 0.00 0.00 33.50 1.89
246 247 8.565896 TTGAGTCATTTAGATGTGCAATAACT 57.434 30.769 0.00 0.00 34.77 2.24
247 248 9.665719 TTGAGTCATTTAGATGTGCAATAACTA 57.334 29.630 0.00 0.00 34.77 2.24
248 249 9.665719 TGAGTCATTTAGATGTGCAATAACTAA 57.334 29.630 0.00 0.00 34.77 2.24
251 252 9.226345 GTCATTTAGATGTGCAATAACTAAAGC 57.774 33.333 15.19 8.28 36.79 3.51
252 253 8.955388 TCATTTAGATGTGCAATAACTAAAGCA 58.045 29.630 15.19 0.00 36.79 3.91
253 254 9.740239 CATTTAGATGTGCAATAACTAAAGCAT 57.260 29.630 15.19 1.26 39.43 3.79
256 257 6.948353 AGATGTGCAATAACTAAAGCATACG 58.052 36.000 0.00 0.00 39.43 3.06
257 258 6.538742 AGATGTGCAATAACTAAAGCATACGT 59.461 34.615 0.00 0.00 39.43 3.57
324 325 5.772825 TCCAGTAGTACGTACAAACTTGT 57.227 39.130 26.55 7.49 44.86 3.16
562 576 4.197750 CAGTGGCTTAGCATCAGATTCTT 58.802 43.478 6.53 0.00 0.00 2.52
568 592 5.466393 GGCTTAGCATCAGATTCTTTCTCTC 59.534 44.000 6.53 0.00 29.93 3.20
680 716 2.278330 GCTTCCCCTTTGGTGCTGG 61.278 63.158 0.00 0.00 33.85 4.85
724 760 2.611172 TACCCACCGCCAATCCCA 60.611 61.111 0.00 0.00 0.00 4.37
879 918 1.959282 CCTGGAAGCAAGCTCAGTTTT 59.041 47.619 9.15 0.00 0.00 2.43
901 942 3.067106 GTTCTCATTCTTCTGTTGCCGA 58.933 45.455 0.00 0.00 0.00 5.54
902 943 2.688507 TCTCATTCTTCTGTTGCCGAC 58.311 47.619 0.00 0.00 0.00 4.79
903 944 2.300152 TCTCATTCTTCTGTTGCCGACT 59.700 45.455 0.00 0.00 0.00 4.18
904 945 3.070018 CTCATTCTTCTGTTGCCGACTT 58.930 45.455 0.00 0.00 0.00 3.01
905 946 2.807967 TCATTCTTCTGTTGCCGACTTG 59.192 45.455 0.00 0.00 0.00 3.16
906 947 0.944386 TTCTTCTGTTGCCGACTTGC 59.056 50.000 0.00 0.00 0.00 4.01
907 948 0.884704 TCTTCTGTTGCCGACTTGCC 60.885 55.000 0.00 0.00 0.00 4.52
908 949 2.175184 CTTCTGTTGCCGACTTGCCG 62.175 60.000 0.00 0.00 0.00 5.69
935 976 2.553466 CCAAGTTCGTGGGGTTGGATAA 60.553 50.000 0.00 0.00 41.82 1.75
941 982 0.524414 GTGGGGTTGGATAACGTTGC 59.476 55.000 11.99 2.52 37.69 4.17
1047 1088 1.417517 TCTGTCTGGAGCTGCTTCAAA 59.582 47.619 12.50 0.00 0.00 2.69
1104 1172 4.082125 GGATCATCAAAGGTGACCACTTT 58.918 43.478 3.63 0.00 38.62 2.66
1131 1223 0.597568 TTTGCTGTCCTGGAATTGCG 59.402 50.000 0.00 0.00 0.00 4.85
1304 1396 1.060986 GTTGCTTTGCTTGTGTTGTGC 59.939 47.619 0.00 0.00 0.00 4.57
1340 1432 7.119699 TGTTATCTTGTATGAAGAGGCTTTGTG 59.880 37.037 0.00 0.00 0.00 3.33
1409 1501 9.856488 TCTAGAAGTGAATACTTGTTGTACATC 57.144 33.333 0.00 0.00 46.79 3.06
1415 1507 7.387948 AGTGAATACTTGTTGTACATCTTCCAC 59.612 37.037 0.00 0.00 31.66 4.02
1450 1543 3.443681 CCCTATGTGGTACTTTTGGCTTG 59.556 47.826 0.00 0.00 0.00 4.01
1776 1951 4.892934 ACTACCAGAAATCAAAGTTGCCAA 59.107 37.500 0.00 0.00 0.00 4.52
1918 2094 1.140852 TCGTTCTGGGATTATGGCCTG 59.859 52.381 3.32 0.00 0.00 4.85
1975 2151 3.944422 AGCGTTCACAGTTTTGTACAG 57.056 42.857 0.00 0.00 35.25 2.74
2465 2643 7.463251 GCTTTGCAGCTATTAACAAAATAGTGC 60.463 37.037 16.62 16.62 43.51 4.40
2575 2753 3.805971 GCTAAATTGAAATGCAGGATGGC 59.194 43.478 0.00 0.00 35.86 4.40
2630 2808 2.867109 CAGGGACCTGAAAGACATGT 57.133 50.000 13.06 0.00 46.30 3.21
2782 2960 6.983307 TGCAAATTTCTTTGTGCTAGCTTTTA 59.017 30.769 17.23 0.00 43.07 1.52
2787 2965 5.530519 TCTTTGTGCTAGCTTTTACATCG 57.469 39.130 17.23 6.05 0.00 3.84
2838 3016 4.489810 CAGGACTAACTTGAGTAGTGCAG 58.510 47.826 5.99 0.00 37.12 4.41
2894 3093 3.072038 TCATGGAGCCTTCATACAGGATG 59.928 47.826 0.00 0.00 46.00 3.51
2926 3149 8.850156 AGCACTATATTGTTCTGTTCTTTTGTT 58.150 29.630 0.00 0.00 0.00 2.83
2927 3150 9.463443 GCACTATATTGTTCTGTTCTTTTGTTT 57.537 29.630 0.00 0.00 0.00 2.83
2997 3230 3.764885 AGCGCAGAATAATGTTTGACC 57.235 42.857 11.47 0.00 0.00 4.02
3048 3281 8.579006 TCAAATGAAATTCCACCATGCTATATC 58.421 33.333 0.00 0.00 33.67 1.63
3049 3282 7.472334 AATGAAATTCCACCATGCTATATCC 57.528 36.000 0.00 0.00 0.00 2.59
3050 3283 5.951204 TGAAATTCCACCATGCTATATCCA 58.049 37.500 0.00 0.00 0.00 3.41
3051 3284 6.372104 TGAAATTCCACCATGCTATATCCAA 58.628 36.000 0.00 0.00 0.00 3.53
3258 3491 2.859165 TCAAAGGATGGAAGCGACTT 57.141 45.000 0.00 0.00 0.00 3.01
3429 3662 6.061441 TGCCATTGTGGTTTATCAGGTATAG 58.939 40.000 0.00 0.00 40.46 1.31
3439 3672 6.700520 GGTTTATCAGGTATAGACAGGAAACG 59.299 42.308 0.00 0.00 28.79 3.60
3470 3704 7.901874 TTTTACTTCAAACGTCAAGCATTAC 57.098 32.000 0.00 0.00 0.00 1.89
3694 3928 0.693049 ATTCTCCTTGCGTTGTCCCT 59.307 50.000 0.00 0.00 0.00 4.20
3707 3941 4.023536 GCGTTGTCCCTTTCTGAATAAACA 60.024 41.667 0.00 0.00 0.00 2.83
3723 3957 9.710979 CTGAATAAACAGAGTTAACACGAAAAA 57.289 29.630 8.61 0.00 39.94 1.94
3724 3958 9.493206 TGAATAAACAGAGTTAACACGAAAAAC 57.507 29.630 8.61 0.00 0.00 2.43
3772 4006 2.517959 TCAAGCTTCCATGGAAAGTGG 58.482 47.619 26.87 16.54 38.11 4.00
3913 4147 4.853924 TTTCCTGGCTTTGACAGATTTC 57.146 40.909 1.43 0.00 42.14 2.17
3917 4151 4.895297 TCCTGGCTTTGACAGATTTCTTTT 59.105 37.500 1.43 0.00 42.14 2.27
3918 4152 5.363580 TCCTGGCTTTGACAGATTTCTTTTT 59.636 36.000 1.43 0.00 42.14 1.94
3919 4153 6.549364 TCCTGGCTTTGACAGATTTCTTTTTA 59.451 34.615 1.43 0.00 42.14 1.52
3920 4154 7.233348 TCCTGGCTTTGACAGATTTCTTTTTAT 59.767 33.333 1.43 0.00 42.14 1.40
3921 4155 7.330208 CCTGGCTTTGACAGATTTCTTTTTATG 59.670 37.037 1.43 0.00 42.14 1.90
3922 4156 6.646240 TGGCTTTGACAGATTTCTTTTTATGC 59.354 34.615 0.00 0.00 0.00 3.14
3971 4205 1.008538 CTGTTGCTGCCGTTTGGTC 60.009 57.895 0.00 0.00 37.67 4.02
4002 4308 9.877178 CATACCTTCCATGTATTCTAATACTCC 57.123 37.037 12.70 0.00 41.39 3.85
4003 4309 7.317722 ACCTTCCATGTATTCTAATACTCCC 57.682 40.000 12.70 0.00 41.39 4.30
4004 4310 7.082972 ACCTTCCATGTATTCTAATACTCCCT 58.917 38.462 12.70 0.00 41.39 4.20
4005 4311 7.235812 ACCTTCCATGTATTCTAATACTCCCTC 59.764 40.741 12.70 0.00 41.39 4.30
4006 4312 7.456269 CCTTCCATGTATTCTAATACTCCCTCT 59.544 40.741 12.70 0.00 41.39 3.69
4007 4313 7.782897 TCCATGTATTCTAATACTCCCTCTG 57.217 40.000 12.70 3.38 41.39 3.35
4008 4314 7.306013 TCCATGTATTCTAATACTCCCTCTGT 58.694 38.462 12.70 0.00 41.39 3.41
4009 4315 7.451877 TCCATGTATTCTAATACTCCCTCTGTC 59.548 40.741 12.70 0.00 41.39 3.51
4010 4316 7.310113 CCATGTATTCTAATACTCCCTCTGTCC 60.310 44.444 12.70 0.00 41.39 4.02
4011 4317 5.768662 TGTATTCTAATACTCCCTCTGTCCG 59.231 44.000 12.70 0.00 41.39 4.79
4012 4318 4.515028 TTCTAATACTCCCTCTGTCCGA 57.485 45.455 0.00 0.00 0.00 4.55
4013 4319 4.515028 TCTAATACTCCCTCTGTCCGAA 57.485 45.455 0.00 0.00 0.00 4.30
4014 4320 4.863548 TCTAATACTCCCTCTGTCCGAAA 58.136 43.478 0.00 0.00 0.00 3.46
4015 4321 5.266788 TCTAATACTCCCTCTGTCCGAAAA 58.733 41.667 0.00 0.00 0.00 2.29
4016 4322 5.897824 TCTAATACTCCCTCTGTCCGAAAAT 59.102 40.000 0.00 0.00 0.00 1.82
4017 4323 7.064866 TCTAATACTCCCTCTGTCCGAAAATA 58.935 38.462 0.00 0.00 0.00 1.40
4018 4324 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4019 4325 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4020 4326 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4021 4327 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4022 4328 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4023 4329 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4024 4330 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
4025 4331 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
4026 4332 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
4027 4333 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
4028 4334 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
4029 4335 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
4030 4336 7.227711 TCTGTCCGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
4031 4337 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
4032 4338 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
4033 4339 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
4034 4340 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
4035 4341 8.638565 CCGAAAATACTTGTCATCAAAATGAAC 58.361 33.333 0.00 0.00 43.42 3.18
4036 4342 8.357966 CGAAAATACTTGTCATCAAAATGAACG 58.642 33.333 0.00 0.00 43.42 3.95
4037 4343 9.393249 GAAAATACTTGTCATCAAAATGAACGA 57.607 29.630 0.00 0.00 43.42 3.85
4038 4344 9.743057 AAAATACTTGTCATCAAAATGAACGAA 57.257 25.926 0.00 0.00 43.42 3.85
4039 4345 9.743057 AAATACTTGTCATCAAAATGAACGAAA 57.257 25.926 0.00 0.00 43.42 3.46
4040 4346 9.743057 AATACTTGTCATCAAAATGAACGAAAA 57.257 25.926 0.00 0.00 43.42 2.29
4041 4347 9.743057 ATACTTGTCATCAAAATGAACGAAAAA 57.257 25.926 0.00 0.00 43.42 1.94
4042 4348 8.118893 ACTTGTCATCAAAATGAACGAAAAAG 57.881 30.769 0.00 0.00 43.42 2.27
4043 4349 7.222611 ACTTGTCATCAAAATGAACGAAAAAGG 59.777 33.333 0.00 0.00 43.42 3.11
4044 4350 6.800543 TGTCATCAAAATGAACGAAAAAGGA 58.199 32.000 0.00 0.00 43.42 3.36
4045 4351 7.432869 TGTCATCAAAATGAACGAAAAAGGAT 58.567 30.769 0.00 0.00 43.42 3.24
4046 4352 7.381948 TGTCATCAAAATGAACGAAAAAGGATG 59.618 33.333 0.00 0.00 43.42 3.51
4047 4353 7.382218 GTCATCAAAATGAACGAAAAAGGATGT 59.618 33.333 0.00 0.00 43.42 3.06
4048 4354 8.572185 TCATCAAAATGAACGAAAAAGGATGTA 58.428 29.630 0.00 0.00 38.97 2.29
4049 4355 9.357652 CATCAAAATGAACGAAAAAGGATGTAT 57.642 29.630 0.00 0.00 34.61 2.29
4050 4356 8.964420 TCAAAATGAACGAAAAAGGATGTATC 57.036 30.769 0.00 0.00 0.00 2.24
4051 4357 8.792633 TCAAAATGAACGAAAAAGGATGTATCT 58.207 29.630 0.00 0.00 0.00 1.98
4054 4360 9.667107 AAATGAACGAAAAAGGATGTATCTAGA 57.333 29.630 0.00 0.00 0.00 2.43
4055 4361 9.667107 AATGAACGAAAAAGGATGTATCTAGAA 57.333 29.630 0.00 0.00 0.00 2.10
4056 4362 8.475331 TGAACGAAAAAGGATGTATCTAGAAC 57.525 34.615 0.00 0.00 0.00 3.01
4057 4363 8.311836 TGAACGAAAAAGGATGTATCTAGAACT 58.688 33.333 0.00 0.00 0.00 3.01
4058 4364 9.798994 GAACGAAAAAGGATGTATCTAGAACTA 57.201 33.333 0.00 0.00 0.00 2.24
4108 4414 8.950007 AAAAAGGATGTACCCTCTTTTATTCA 57.050 30.769 13.67 0.00 40.05 2.57
4109 4415 9.547279 AAAAAGGATGTACCCTCTTTTATTCAT 57.453 29.630 13.67 0.00 40.05 2.57
4110 4416 9.547279 AAAAGGATGTACCCTCTTTTATTCATT 57.453 29.630 12.42 0.00 40.05 2.57
4111 4417 9.547279 AAAGGATGTACCCTCTTTTATTCATTT 57.453 29.630 0.00 0.00 40.05 2.32
4112 4418 9.547279 AAGGATGTACCCTCTTTTATTCATTTT 57.453 29.630 0.00 0.00 40.05 1.82
4113 4419 8.971073 AGGATGTACCCTCTTTTATTCATTTTG 58.029 33.333 0.00 0.00 40.05 2.44
4114 4420 8.966868 GGATGTACCCTCTTTTATTCATTTTGA 58.033 33.333 0.00 0.00 0.00 2.69
4117 4423 9.527157 TGTACCCTCTTTTATTCATTTTGATGA 57.473 29.630 0.00 0.00 0.00 2.92
4118 4424 9.788960 GTACCCTCTTTTATTCATTTTGATGAC 57.211 33.333 0.00 0.00 0.00 3.06
4119 4425 8.421249 ACCCTCTTTTATTCATTTTGATGACA 57.579 30.769 0.00 0.00 0.00 3.58
4120 4426 8.869109 ACCCTCTTTTATTCATTTTGATGACAA 58.131 29.630 0.00 0.00 0.00 3.18
4121 4427 9.362539 CCCTCTTTTATTCATTTTGATGACAAG 57.637 33.333 0.00 0.00 37.32 3.16
4122 4428 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4129 4435 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4130 4436 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4131 4437 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4132 4438 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4133 4439 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4134 4440 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4135 4441 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4136 4442 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4137 4443 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4138 4444 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4139 4445 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4140 4446 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4141 4447 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4142 4448 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4153 4459 2.969950 CGGAGGGAGTATGTTGGGAATA 59.030 50.000 0.00 0.00 0.00 1.75
4206 4927 7.707893 ACATTGTGCTAATTAATCTTGCCATTC 59.292 33.333 0.00 0.00 0.00 2.67
4216 4937 7.639113 TTAATCTTGCCATTCCGAATTTACT 57.361 32.000 0.00 0.00 0.00 2.24
4217 4938 5.757850 ATCTTGCCATTCCGAATTTACTC 57.242 39.130 0.00 0.00 0.00 2.59
4218 4939 3.945285 TCTTGCCATTCCGAATTTACTCC 59.055 43.478 0.00 0.00 0.00 3.85
4219 4940 2.650322 TGCCATTCCGAATTTACTCCC 58.350 47.619 0.00 0.00 0.00 4.30
4220 4941 2.241176 TGCCATTCCGAATTTACTCCCT 59.759 45.455 0.00 0.00 0.00 4.20
4221 4942 2.879026 GCCATTCCGAATTTACTCCCTC 59.121 50.000 0.00 0.00 0.00 4.30
4222 4943 3.477530 CCATTCCGAATTTACTCCCTCC 58.522 50.000 0.00 0.00 0.00 4.30
4223 4944 2.973694 TTCCGAATTTACTCCCTCCG 57.026 50.000 0.00 0.00 0.00 4.63
4224 4945 1.856629 TCCGAATTTACTCCCTCCGT 58.143 50.000 0.00 0.00 0.00 4.69
4225 4946 1.753073 TCCGAATTTACTCCCTCCGTC 59.247 52.381 0.00 0.00 0.00 4.79
4226 4947 1.755380 CCGAATTTACTCCCTCCGTCT 59.245 52.381 0.00 0.00 0.00 4.18
4227 4948 2.167900 CCGAATTTACTCCCTCCGTCTT 59.832 50.000 0.00 0.00 0.00 3.01
4228 4949 3.382546 CCGAATTTACTCCCTCCGTCTTA 59.617 47.826 0.00 0.00 0.00 2.10
4229 4950 4.038883 CCGAATTTACTCCCTCCGTCTTAT 59.961 45.833 0.00 0.00 0.00 1.73
4230 4951 5.242393 CCGAATTTACTCCCTCCGTCTTATA 59.758 44.000 0.00 0.00 0.00 0.98
4231 4952 6.239120 CCGAATTTACTCCCTCCGTCTTATAA 60.239 42.308 0.00 0.00 0.00 0.98
4232 4953 7.376615 CGAATTTACTCCCTCCGTCTTATAAT 58.623 38.462 0.00 0.00 0.00 1.28
4233 4954 8.517878 CGAATTTACTCCCTCCGTCTTATAATA 58.482 37.037 0.00 0.00 0.00 0.98
4239 4960 8.810990 ACTCCCTCCGTCTTATAATATAAGAG 57.189 38.462 19.73 14.20 34.59 2.85
4240 4961 7.339976 ACTCCCTCCGTCTTATAATATAAGAGC 59.660 40.741 19.73 14.19 34.59 4.09
4241 4962 6.606395 TCCCTCCGTCTTATAATATAAGAGCC 59.394 42.308 19.73 10.49 34.59 4.70
4242 4963 6.608002 CCCTCCGTCTTATAATATAAGAGCCT 59.392 42.308 19.73 0.00 34.59 4.58
4243 4964 7.124448 CCCTCCGTCTTATAATATAAGAGCCTT 59.876 40.741 19.73 0.00 34.59 4.35
4244 4965 8.532819 CCTCCGTCTTATAATATAAGAGCCTTT 58.467 37.037 19.73 0.00 34.59 3.11
4245 4966 9.930693 CTCCGTCTTATAATATAAGAGCCTTTT 57.069 33.333 19.73 0.00 34.59 2.27
4255 4976 8.870075 AATATAAGAGCCTTTTTGACACTCTT 57.130 30.769 8.46 8.46 46.50 2.85
4260 4981 8.870075 AAGAGCCTTTTTGACACTCTTATATT 57.130 30.769 1.91 0.00 43.88 1.28
4261 4982 9.959721 AAGAGCCTTTTTGACACTCTTATATTA 57.040 29.630 1.91 0.00 43.88 0.98
4264 4985 9.125026 AGCCTTTTTGACACTCTTATATTATGG 57.875 33.333 0.00 0.00 0.00 2.74
4265 4986 8.352942 GCCTTTTTGACACTCTTATATTATGGG 58.647 37.037 0.00 0.00 0.00 4.00
4266 4987 9.627123 CCTTTTTGACACTCTTATATTATGGGA 57.373 33.333 0.00 0.00 0.00 4.37
4324 5048 8.116651 TCTATTGGCTTAAATTTGTGCAGTTA 57.883 30.769 15.64 6.11 0.00 2.24
4577 5303 6.581171 AAATGGTCTTCTTCTCCATTCAAC 57.419 37.500 8.73 0.00 46.88 3.18
4583 5309 0.449388 CTTCTCCATTCAACAGGCGC 59.551 55.000 0.00 0.00 0.00 6.53
4699 5425 3.077359 GTTCTTTGACCCTCTGATGGTG 58.923 50.000 9.47 0.00 35.85 4.17
4765 5491 1.201921 GCGTACCTTCAGAAATGCGTG 60.202 52.381 6.48 0.00 0.00 5.34
4849 5575 5.035784 AGCGAAAACAAGCAGAAATAGAC 57.964 39.130 0.00 0.00 35.48 2.59
5250 5976 4.509616 CCGTTGTCCATATGTGTTTCCTA 58.490 43.478 1.24 0.00 0.00 2.94
5256 5982 6.539173 TGTCCATATGTGTTTCCTAAGTTGT 58.461 36.000 1.24 0.00 0.00 3.32
5343 6078 1.603802 CAGAAAGCAAAGTTCGCCTCA 59.396 47.619 0.00 0.00 0.00 3.86
5400 6138 9.750125 GGATTTTATTAGCTTTTATCCACCAAG 57.250 33.333 0.00 0.00 32.31 3.61
5424 6162 7.106239 AGATGGTGTTACAGTGAAAATAGGAG 58.894 38.462 0.00 0.00 0.00 3.69
5430 6168 6.497259 TGTTACAGTGAAAATAGGAGGAGTCT 59.503 38.462 0.00 0.00 0.00 3.24
5431 6169 5.669164 ACAGTGAAAATAGGAGGAGTCTC 57.331 43.478 0.00 0.00 39.25 3.36
5460 6242 6.589907 CCAAATTTGAGGGTTGCACTAAATAC 59.410 38.462 19.86 0.00 0.00 1.89
5555 6339 9.848710 ATATGAACTGAGAATTGAAGACATGAT 57.151 29.630 0.00 0.00 0.00 2.45
5799 6585 0.788391 GTGCTTCGTAACCGTGGAAG 59.212 55.000 0.00 0.00 40.03 3.46
5814 6606 2.357952 GTGGAAGGAACAACAACAGTCC 59.642 50.000 0.00 0.00 0.00 3.85
5860 6653 4.068599 TGATACTGAAATGCCGACAACAA 58.931 39.130 0.00 0.00 0.00 2.83
5901 6694 8.246180 GTCCATTACACATGATGAAGAAACATT 58.754 33.333 0.00 0.00 0.00 2.71
5918 6711 4.978083 ACATTGGCAGATCTCAACAATC 57.022 40.909 11.24 0.00 30.00 2.67
5922 6715 3.753815 TGGCAGATCTCAACAATCAACA 58.246 40.909 0.00 0.00 0.00 3.33
5927 6720 5.621555 GCAGATCTCAACAATCAACAAGCAT 60.622 40.000 0.00 0.00 0.00 3.79
5933 6726 3.559238 ACAATCAACAAGCATCGGAAC 57.441 42.857 0.00 0.00 0.00 3.62
5984 6777 1.379044 CTGCCCCTTCTTGCGGATT 60.379 57.895 0.00 0.00 35.88 3.01
6005 6798 3.465296 GATGCACATGCTGAGGCGC 62.465 63.158 0.00 0.00 42.66 6.53
6011 6804 2.202797 ATGCTGAGGCGCGTACTG 60.203 61.111 8.43 5.00 42.25 2.74
6017 6810 4.415332 AGGCGCGTACTGTCCACG 62.415 66.667 8.43 0.00 42.24 4.94
6020 6813 2.874780 CGCGTACTGTCCACGAGC 60.875 66.667 7.25 0.00 41.91 5.03
6032 6825 2.752238 ACGAGCGACTCTGGGAGG 60.752 66.667 0.00 0.00 33.35 4.30
6038 6831 1.000486 CGACTCTGGGAGGAGGGAA 60.000 63.158 0.00 0.00 37.63 3.97
6052 6845 3.140144 AGGAGGGAAATCAAGAACCACAA 59.860 43.478 0.00 0.00 0.00 3.33
6152 6945 2.791253 TGGCACAAGGAAGGAGGAT 58.209 52.632 0.00 0.00 31.92 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.396022 CACCTACATTTGACTAAGATATGGTTT 57.604 33.333 0.00 0.00 0.00 3.27
1 2 7.499232 GCACCTACATTTGACTAAGATATGGTT 59.501 37.037 0.00 0.00 0.00 3.67
2 3 6.992715 GCACCTACATTTGACTAAGATATGGT 59.007 38.462 0.00 0.00 0.00 3.55
3 4 6.146184 CGCACCTACATTTGACTAAGATATGG 59.854 42.308 0.00 0.00 0.00 2.74
4 5 6.923508 TCGCACCTACATTTGACTAAGATATG 59.076 38.462 0.00 0.00 0.00 1.78
5 6 7.050970 TCGCACCTACATTTGACTAAGATAT 57.949 36.000 0.00 0.00 0.00 1.63
6 7 6.459670 TCGCACCTACATTTGACTAAGATA 57.540 37.500 0.00 0.00 0.00 1.98
7 8 5.339008 TCGCACCTACATTTGACTAAGAT 57.661 39.130 0.00 0.00 0.00 2.40
8 9 4.744570 CTCGCACCTACATTTGACTAAGA 58.255 43.478 0.00 0.00 0.00 2.10
9 10 3.307242 GCTCGCACCTACATTTGACTAAG 59.693 47.826 0.00 0.00 0.00 2.18
10 11 3.259064 GCTCGCACCTACATTTGACTAA 58.741 45.455 0.00 0.00 0.00 2.24
11 12 2.232696 TGCTCGCACCTACATTTGACTA 59.767 45.455 0.00 0.00 0.00 2.59
12 13 1.001974 TGCTCGCACCTACATTTGACT 59.998 47.619 0.00 0.00 0.00 3.41
13 14 1.128692 GTGCTCGCACCTACATTTGAC 59.871 52.381 10.82 0.00 40.79 3.18
14 15 1.270571 TGTGCTCGCACCTACATTTGA 60.271 47.619 18.35 0.00 45.63 2.69
15 16 1.155889 TGTGCTCGCACCTACATTTG 58.844 50.000 18.35 0.00 45.63 2.32
16 17 2.113860 ATGTGCTCGCACCTACATTT 57.886 45.000 18.35 0.00 45.63 2.32
17 18 2.979814 TATGTGCTCGCACCTACATT 57.020 45.000 18.35 0.98 45.63 2.71
18 19 2.979814 TTATGTGCTCGCACCTACAT 57.020 45.000 18.35 8.44 45.63 2.29
19 20 2.979814 ATTATGTGCTCGCACCTACA 57.020 45.000 18.35 1.18 45.63 2.74
20 21 3.458189 AGAATTATGTGCTCGCACCTAC 58.542 45.455 18.35 3.18 45.63 3.18
21 22 3.819564 AGAATTATGTGCTCGCACCTA 57.180 42.857 18.35 10.73 45.63 3.08
22 23 2.698855 AGAATTATGTGCTCGCACCT 57.301 45.000 18.35 11.71 45.63 4.00
23 24 3.764885 AAAGAATTATGTGCTCGCACC 57.235 42.857 18.35 2.98 45.63 5.01
119 120 8.094548 AGTTAGATGTGCAATACTTAGAACACA 58.905 33.333 0.00 0.00 41.73 3.72
120 121 8.480643 AGTTAGATGTGCAATACTTAGAACAC 57.519 34.615 0.00 0.00 0.00 3.32
121 122 8.531982 AGAGTTAGATGTGCAATACTTAGAACA 58.468 33.333 0.00 0.00 0.00 3.18
122 123 8.934507 AGAGTTAGATGTGCAATACTTAGAAC 57.065 34.615 0.00 0.00 0.00 3.01
125 126 9.803315 TGTAAGAGTTAGATGTGCAATACTTAG 57.197 33.333 0.00 0.00 0.00 2.18
127 128 9.319143 GATGTAAGAGTTAGATGTGCAATACTT 57.681 33.333 0.00 0.00 0.00 2.24
128 129 8.478066 TGATGTAAGAGTTAGATGTGCAATACT 58.522 33.333 0.00 0.00 0.00 2.12
129 130 8.648557 TGATGTAAGAGTTAGATGTGCAATAC 57.351 34.615 0.00 0.00 0.00 1.89
130 131 9.836864 AATGATGTAAGAGTTAGATGTGCAATA 57.163 29.630 0.00 0.00 0.00 1.90
131 132 8.743085 AATGATGTAAGAGTTAGATGTGCAAT 57.257 30.769 0.00 0.00 0.00 3.56
132 133 9.665719 TTAATGATGTAAGAGTTAGATGTGCAA 57.334 29.630 0.00 0.00 0.00 4.08
133 134 9.836864 ATTAATGATGTAAGAGTTAGATGTGCA 57.163 29.630 0.00 0.00 0.00 4.57
163 164 9.167311 AGAAAATAGTTGCTCGAATCTTAACAT 57.833 29.630 0.00 0.00 0.00 2.71
164 165 8.547967 AGAAAATAGTTGCTCGAATCTTAACA 57.452 30.769 0.00 0.00 0.00 2.41
165 166 9.827411 AAAGAAAATAGTTGCTCGAATCTTAAC 57.173 29.630 0.00 0.00 0.00 2.01
167 168 9.825972 CAAAAGAAAATAGTTGCTCGAATCTTA 57.174 29.630 0.00 0.00 0.00 2.10
168 169 8.352942 ACAAAAGAAAATAGTTGCTCGAATCTT 58.647 29.630 0.00 0.00 0.00 2.40
169 170 7.875971 ACAAAAGAAAATAGTTGCTCGAATCT 58.124 30.769 0.00 0.00 0.00 2.40
170 171 8.017946 AGACAAAAGAAAATAGTTGCTCGAATC 58.982 33.333 0.00 0.00 0.00 2.52
171 172 7.875971 AGACAAAAGAAAATAGTTGCTCGAAT 58.124 30.769 0.00 0.00 0.00 3.34
172 173 7.259290 AGACAAAAGAAAATAGTTGCTCGAA 57.741 32.000 0.00 0.00 0.00 3.71
173 174 6.861065 AGACAAAAGAAAATAGTTGCTCGA 57.139 33.333 0.00 0.00 0.00 4.04
174 175 7.914537 AAAGACAAAAGAAAATAGTTGCTCG 57.085 32.000 0.00 0.00 0.00 5.03
214 215 9.013229 TGCACATCTAAATGACTCAATTAAACT 57.987 29.630 0.00 0.00 36.67 2.66
215 216 9.624697 TTGCACATCTAAATGACTCAATTAAAC 57.375 29.630 0.00 0.00 36.67 2.01
219 220 9.793252 GTTATTGCACATCTAAATGACTCAATT 57.207 29.630 0.00 0.00 36.67 2.32
220 221 9.182214 AGTTATTGCACATCTAAATGACTCAAT 57.818 29.630 0.00 0.00 36.67 2.57
221 222 8.565896 AGTTATTGCACATCTAAATGACTCAA 57.434 30.769 0.00 0.00 36.67 3.02
222 223 9.665719 TTAGTTATTGCACATCTAAATGACTCA 57.334 29.630 0.00 0.00 33.65 3.41
225 226 9.226345 GCTTTAGTTATTGCACATCTAAATGAC 57.774 33.333 10.70 0.00 36.67 3.06
226 227 8.955388 TGCTTTAGTTATTGCACATCTAAATGA 58.045 29.630 10.70 0.00 36.67 2.57
227 228 9.740239 ATGCTTTAGTTATTGCACATCTAAATG 57.260 29.630 10.70 7.95 38.29 2.32
230 231 8.547894 CGTATGCTTTAGTTATTGCACATCTAA 58.452 33.333 0.00 0.00 38.29 2.10
231 232 7.709182 ACGTATGCTTTAGTTATTGCACATCTA 59.291 33.333 0.00 0.00 38.29 1.98
232 233 6.538742 ACGTATGCTTTAGTTATTGCACATCT 59.461 34.615 0.00 0.00 38.29 2.90
233 234 6.628856 CACGTATGCTTTAGTTATTGCACATC 59.371 38.462 0.00 0.00 38.29 3.06
234 235 6.315144 TCACGTATGCTTTAGTTATTGCACAT 59.685 34.615 0.00 0.00 38.29 3.21
235 236 5.639931 TCACGTATGCTTTAGTTATTGCACA 59.360 36.000 0.00 0.00 38.29 4.57
236 237 6.102006 TCACGTATGCTTTAGTTATTGCAC 57.898 37.500 0.00 0.00 38.29 4.57
237 238 6.729391 TTCACGTATGCTTTAGTTATTGCA 57.271 33.333 0.00 0.00 39.83 4.08
238 239 8.122952 AGAATTCACGTATGCTTTAGTTATTGC 58.877 33.333 8.44 0.00 0.00 3.56
239 240 9.425893 CAGAATTCACGTATGCTTTAGTTATTG 57.574 33.333 8.44 0.00 0.00 1.90
240 241 8.612619 CCAGAATTCACGTATGCTTTAGTTATT 58.387 33.333 8.44 0.00 0.00 1.40
241 242 7.769044 ACCAGAATTCACGTATGCTTTAGTTAT 59.231 33.333 8.44 0.00 0.00 1.89
242 243 7.101054 ACCAGAATTCACGTATGCTTTAGTTA 58.899 34.615 8.44 0.00 0.00 2.24
243 244 5.938125 ACCAGAATTCACGTATGCTTTAGTT 59.062 36.000 8.44 0.00 0.00 2.24
244 245 5.488341 ACCAGAATTCACGTATGCTTTAGT 58.512 37.500 8.44 0.00 0.00 2.24
245 246 5.006746 GGACCAGAATTCACGTATGCTTTAG 59.993 44.000 8.44 0.00 0.00 1.85
246 247 4.873827 GGACCAGAATTCACGTATGCTTTA 59.126 41.667 8.44 0.00 0.00 1.85
247 248 3.689649 GGACCAGAATTCACGTATGCTTT 59.310 43.478 8.44 0.00 0.00 3.51
248 249 3.270877 GGACCAGAATTCACGTATGCTT 58.729 45.455 8.44 0.00 0.00 3.91
249 250 2.236146 TGGACCAGAATTCACGTATGCT 59.764 45.455 8.44 0.00 0.00 3.79
250 251 2.609459 CTGGACCAGAATTCACGTATGC 59.391 50.000 17.22 0.00 32.44 3.14
251 252 4.123497 TCTGGACCAGAATTCACGTATG 57.877 45.455 22.30 0.00 37.57 2.39
252 253 4.819105 TTCTGGACCAGAATTCACGTAT 57.181 40.909 29.45 0.00 44.27 3.06
275 276 8.091385 TGAGATGATTATCCATTTGAATCACG 57.909 34.615 0.00 0.00 41.17 4.35
562 576 1.548357 GGCTGTGCCCTGAGAGAGAA 61.548 60.000 0.00 0.00 44.06 2.87
638 674 6.019801 GCGAGAAAACTAGCAATAAATCGAGA 60.020 38.462 0.00 0.00 0.00 4.04
680 716 6.365839 GGCGGTTAACTAACTAAACAAGAAC 58.634 40.000 5.42 0.00 36.47 3.01
879 918 2.807967 CGGCAACAGAAGAATGAGAACA 59.192 45.455 0.00 0.00 0.00 3.18
905 946 2.251642 ACGAACTTGGCAAGACGGC 61.252 57.895 33.63 20.90 41.67 5.68
906 947 1.569493 CACGAACTTGGCAAGACGG 59.431 57.895 33.63 25.06 36.68 4.79
907 948 1.569493 CCACGAACTTGGCAAGACG 59.431 57.895 32.50 31.81 37.63 4.18
908 949 1.515521 CCCCACGAACTTGGCAAGAC 61.516 60.000 32.50 22.42 35.00 3.01
935 976 0.947244 CCTTCAAGAGCAAGCAACGT 59.053 50.000 0.00 0.00 0.00 3.99
941 982 5.105997 CCTTTGTATTCCCTTCAAGAGCAAG 60.106 44.000 0.00 0.00 0.00 4.01
1047 1088 2.800250 CCACAGAAGAAGGGCAAGAAT 58.200 47.619 0.00 0.00 0.00 2.40
1104 1172 1.544093 CCAGGACAGCAAAGAGAAGCA 60.544 52.381 0.00 0.00 0.00 3.91
1304 1396 6.820335 TCATACAAGATAACAGGGTGATCAG 58.180 40.000 0.00 0.00 0.00 2.90
1340 1432 5.164233 GGAATGCTCCAAGAAAGTAAAAGC 58.836 41.667 0.00 0.00 41.96 3.51
1409 1501 4.828829 AGGGTCGTTACTAAATGTGGAAG 58.171 43.478 0.00 0.00 0.00 3.46
1415 1507 5.667466 ACCACATAGGGTCGTTACTAAATG 58.333 41.667 0.00 0.00 43.89 2.32
1450 1543 5.491982 ACTCTATTGGTTCCATCACTGTTC 58.508 41.667 0.00 0.00 0.00 3.18
1658 1831 0.244450 ATTGTCAGTTGCAATGGCCG 59.756 50.000 0.59 0.00 40.13 6.13
1756 1929 4.634199 CATTGGCAACTTTGATTTCTGGT 58.366 39.130 0.00 0.00 37.61 4.00
1776 1951 7.885297 ACTATGAAACAAAACATGTGTAGCAT 58.115 30.769 0.00 3.79 42.99 3.79
1918 2094 4.970662 AGTATGTCCAAATCACATGCAC 57.029 40.909 0.00 0.00 38.82 4.57
1996 2172 8.071177 TCTATGTACATAGATCCATCACATGG 57.929 38.462 32.50 10.91 45.91 3.66
2447 2625 8.964420 TTCTTGTGCACTATTTTGTTAATAGC 57.036 30.769 19.41 0.00 34.43 2.97
2462 2640 2.032799 TGACCGTGAATTTCTTGTGCAC 59.967 45.455 10.75 10.75 0.00 4.57
2465 2643 6.915300 TGTAATTTGACCGTGAATTTCTTGTG 59.085 34.615 0.00 0.00 0.00 3.33
2528 2706 3.153919 TCATGTAAAACAAGCACTCCCC 58.846 45.455 0.00 0.00 0.00 4.81
2575 2753 2.169144 TCCTGTGATAGTGCTCCATGTG 59.831 50.000 0.00 0.00 0.00 3.21
2782 2960 4.906618 AGTTTTGTCCAAGTATCCGATGT 58.093 39.130 0.00 0.00 0.00 3.06
2816 2994 4.021894 ACTGCACTACTCAAGTTAGTCCTG 60.022 45.833 0.00 0.00 35.76 3.86
2848 3046 8.420222 TGATTCCACTTTTACAATGACACAATT 58.580 29.630 0.00 0.00 0.00 2.32
2850 3048 7.340122 TGATTCCACTTTTACAATGACACAA 57.660 32.000 0.00 0.00 0.00 3.33
2926 3149 9.664332 AGCAAAAACAAATGCACCATATATAAA 57.336 25.926 0.00 0.00 44.95 1.40
2929 3152 9.263538 CATAGCAAAAACAAATGCACCATATAT 57.736 29.630 0.00 0.00 44.95 0.86
2997 3230 8.369218 ACAAGGCAAAATTTCACATTTCTTAG 57.631 30.769 0.00 0.00 0.00 2.18
3258 3491 7.418368 CCTTCTCTGCCAACTAGATCTTCAATA 60.418 40.741 0.00 0.00 0.00 1.90
3324 3557 3.939740 AATGGCCAGAGAAGAATAGCA 57.060 42.857 13.05 0.00 0.00 3.49
3429 3662 9.887406 TGAAGTAAAAATATTTCGTTTCCTGTC 57.113 29.630 0.10 0.00 0.00 3.51
3439 3672 9.989394 GCTTGACGTTTGAAGTAAAAATATTTC 57.011 29.630 0.10 0.00 0.00 2.17
3470 3704 4.620982 TGATACTGATACGTCAATGCAGG 58.379 43.478 0.00 0.00 33.05 4.85
3481 3715 3.802685 GGCTTCACCGTTGATACTGATAC 59.197 47.826 0.00 0.00 0.00 2.24
3482 3716 3.449377 TGGCTTCACCGTTGATACTGATA 59.551 43.478 0.00 0.00 43.94 2.15
3483 3717 2.236146 TGGCTTCACCGTTGATACTGAT 59.764 45.455 0.00 0.00 43.94 2.90
3484 3718 1.621317 TGGCTTCACCGTTGATACTGA 59.379 47.619 0.00 0.00 43.94 3.41
3485 3719 1.732259 GTGGCTTCACCGTTGATACTG 59.268 52.381 0.00 0.00 43.94 2.74
3486 3720 1.671850 CGTGGCTTCACCGTTGATACT 60.672 52.381 0.00 0.00 43.94 2.12
3694 3928 8.651391 TCGTGTTAACTCTGTTTATTCAGAAA 57.349 30.769 7.22 0.00 42.73 2.52
3707 3941 4.261447 GGCATGGTTTTTCGTGTTAACTCT 60.261 41.667 7.22 0.00 0.00 3.24
3723 3957 3.181458 CGGTATACAAACCTAGGCATGGT 60.181 47.826 9.30 4.45 39.91 3.55
3724 3958 3.399330 CGGTATACAAACCTAGGCATGG 58.601 50.000 9.30 0.00 37.39 3.66
3762 3996 2.676471 GCCACGGCCACTTTCCAT 60.676 61.111 2.24 0.00 34.56 3.41
3913 4147 3.421888 GTGCAGTGAACACGCATAAAAAG 59.578 43.478 19.90 0.00 40.64 2.27
3917 4151 1.587547 TGTGCAGTGAACACGCATAA 58.412 45.000 19.90 12.78 40.64 1.90
3918 4152 1.587547 TTGTGCAGTGAACACGCATA 58.412 45.000 19.90 16.52 40.64 3.14
3919 4153 0.953727 ATTGTGCAGTGAACACGCAT 59.046 45.000 19.90 0.00 40.64 4.73
3920 4154 0.737804 AATTGTGCAGTGAACACGCA 59.262 45.000 2.44 15.72 41.03 5.24
3921 4155 1.838913 AAATTGTGCAGTGAACACGC 58.161 45.000 2.44 12.13 41.03 5.34
3944 4178 1.219522 GGCAGCAACAGCAAAGCAAG 61.220 55.000 0.00 0.00 0.00 4.01
3950 4184 1.226916 CAAACGGCAGCAACAGCAA 60.227 52.632 0.00 0.00 0.00 3.91
3952 4186 2.355009 CCAAACGGCAGCAACAGC 60.355 61.111 0.00 0.00 0.00 4.40
3953 4187 1.008538 GACCAAACGGCAGCAACAG 60.009 57.895 0.00 0.00 0.00 3.16
3999 4305 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4000 4306 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4001 4307 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4002 4308 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
4003 4309 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
4004 4310 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
4005 4311 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
4006 4312 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
4007 4313 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
4008 4314 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
4009 4315 8.638565 GTTCATTTTGATGACAAGTATTTTCGG 58.361 33.333 0.00 0.00 37.32 4.30
4010 4316 8.357966 CGTTCATTTTGATGACAAGTATTTTCG 58.642 33.333 0.00 0.00 37.32 3.46
4011 4317 9.393249 TCGTTCATTTTGATGACAAGTATTTTC 57.607 29.630 0.00 0.00 37.32 2.29
4012 4318 9.743057 TTCGTTCATTTTGATGACAAGTATTTT 57.257 25.926 0.00 0.00 37.32 1.82
4013 4319 9.743057 TTTCGTTCATTTTGATGACAAGTATTT 57.257 25.926 0.00 0.00 37.32 1.40
4014 4320 9.743057 TTTTCGTTCATTTTGATGACAAGTATT 57.257 25.926 0.00 0.00 37.32 1.89
4015 4321 9.743057 TTTTTCGTTCATTTTGATGACAAGTAT 57.257 25.926 0.00 0.00 37.32 2.12
4016 4322 9.232082 CTTTTTCGTTCATTTTGATGACAAGTA 57.768 29.630 0.00 0.00 37.32 2.24
4017 4323 7.222611 CCTTTTTCGTTCATTTTGATGACAAGT 59.777 33.333 0.00 0.00 37.32 3.16
4018 4324 7.434897 TCCTTTTTCGTTCATTTTGATGACAAG 59.565 33.333 0.00 0.00 37.32 3.16
4019 4325 7.261325 TCCTTTTTCGTTCATTTTGATGACAA 58.739 30.769 0.00 0.00 0.00 3.18
4020 4326 6.800543 TCCTTTTTCGTTCATTTTGATGACA 58.199 32.000 0.00 0.00 0.00 3.58
4021 4327 7.382218 ACATCCTTTTTCGTTCATTTTGATGAC 59.618 33.333 0.00 0.00 32.39 3.06
4022 4328 7.432869 ACATCCTTTTTCGTTCATTTTGATGA 58.567 30.769 0.00 0.00 32.39 2.92
4023 4329 7.642071 ACATCCTTTTTCGTTCATTTTGATG 57.358 32.000 0.00 0.00 33.80 3.07
4024 4330 9.573133 GATACATCCTTTTTCGTTCATTTTGAT 57.427 29.630 0.00 0.00 0.00 2.57
4025 4331 8.792633 AGATACATCCTTTTTCGTTCATTTTGA 58.207 29.630 0.00 0.00 0.00 2.69
4026 4332 8.970691 AGATACATCCTTTTTCGTTCATTTTG 57.029 30.769 0.00 0.00 0.00 2.44
4028 4334 9.667107 TCTAGATACATCCTTTTTCGTTCATTT 57.333 29.630 0.00 0.00 0.00 2.32
4029 4335 9.667107 TTCTAGATACATCCTTTTTCGTTCATT 57.333 29.630 0.00 0.00 0.00 2.57
4030 4336 9.099454 GTTCTAGATACATCCTTTTTCGTTCAT 57.901 33.333 0.00 0.00 0.00 2.57
4031 4337 8.311836 AGTTCTAGATACATCCTTTTTCGTTCA 58.688 33.333 0.00 0.00 0.00 3.18
4032 4338 8.705048 AGTTCTAGATACATCCTTTTTCGTTC 57.295 34.615 0.00 0.00 0.00 3.95
4083 4389 8.950007 TGAATAAAAGAGGGTACATCCTTTTT 57.050 30.769 17.42 10.56 41.27 1.94
4084 4390 9.547279 AATGAATAAAAGAGGGTACATCCTTTT 57.453 29.630 16.80 16.80 40.57 2.27
4085 4391 9.547279 AAATGAATAAAAGAGGGTACATCCTTT 57.453 29.630 0.00 0.00 37.25 3.11
4086 4392 9.547279 AAAATGAATAAAAGAGGGTACATCCTT 57.453 29.630 0.00 0.00 37.25 3.36
4087 4393 8.971073 CAAAATGAATAAAAGAGGGTACATCCT 58.029 33.333 0.00 0.00 40.43 3.24
4088 4394 8.966868 TCAAAATGAATAAAAGAGGGTACATCC 58.033 33.333 0.00 0.00 0.00 3.51
4091 4397 9.527157 TCATCAAAATGAATAAAAGAGGGTACA 57.473 29.630 0.00 0.00 38.97 2.90
4092 4398 9.788960 GTCATCAAAATGAATAAAAGAGGGTAC 57.211 33.333 0.00 0.00 43.42 3.34
4093 4399 9.527157 TGTCATCAAAATGAATAAAAGAGGGTA 57.473 29.630 0.00 0.00 43.42 3.69
4094 4400 8.421249 TGTCATCAAAATGAATAAAAGAGGGT 57.579 30.769 0.00 0.00 43.42 4.34
4095 4401 9.362539 CTTGTCATCAAAATGAATAAAAGAGGG 57.637 33.333 0.00 0.00 43.42 4.30
4096 4402 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
4104 4410 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4105 4411 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4106 4412 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4107 4413 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4108 4414 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4109 4415 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4110 4416 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4111 4417 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4112 4418 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4113 4419 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4114 4420 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4115 4421 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4116 4422 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4117 4423 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4118 4424 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4119 4425 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4120 4426 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4121 4427 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4122 4428 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4123 4429 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4124 4430 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4125 4431 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
4126 4432 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
4127 4433 1.041447 AACATACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
4128 4434 0.102481 CAACATACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
4129 4435 0.464452 CCAACATACTCCCTCCGTCC 59.536 60.000 0.00 0.00 0.00 4.79
4130 4436 0.464452 CCCAACATACTCCCTCCGTC 59.536 60.000 0.00 0.00 0.00 4.79
4131 4437 0.042131 TCCCAACATACTCCCTCCGT 59.958 55.000 0.00 0.00 0.00 4.69
4132 4438 1.200519 TTCCCAACATACTCCCTCCG 58.799 55.000 0.00 0.00 0.00 4.63
4133 4439 3.244596 GCTATTCCCAACATACTCCCTCC 60.245 52.174 0.00 0.00 0.00 4.30
4134 4440 3.555168 CGCTATTCCCAACATACTCCCTC 60.555 52.174 0.00 0.00 0.00 4.30
4135 4441 2.368875 CGCTATTCCCAACATACTCCCT 59.631 50.000 0.00 0.00 0.00 4.20
4136 4442 2.767505 CGCTATTCCCAACATACTCCC 58.232 52.381 0.00 0.00 0.00 4.30
4137 4443 2.143925 GCGCTATTCCCAACATACTCC 58.856 52.381 0.00 0.00 0.00 3.85
4138 4444 2.143925 GGCGCTATTCCCAACATACTC 58.856 52.381 7.64 0.00 0.00 2.59
4139 4445 1.768870 AGGCGCTATTCCCAACATACT 59.231 47.619 7.64 0.00 0.00 2.12
4140 4446 1.873591 CAGGCGCTATTCCCAACATAC 59.126 52.381 7.64 0.00 0.00 2.39
4141 4447 1.488812 ACAGGCGCTATTCCCAACATA 59.511 47.619 7.64 0.00 0.00 2.29
4142 4448 0.255890 ACAGGCGCTATTCCCAACAT 59.744 50.000 7.64 0.00 0.00 2.71
4167 4473 8.757164 ATTAGCACAATGTAACCTTTAAAAGC 57.243 30.769 0.00 0.00 0.00 3.51
4206 4927 1.755380 AGACGGAGGGAGTAAATTCGG 59.245 52.381 0.00 0.00 0.00 4.30
4216 4937 6.606395 GGCTCTTATATTATAAGACGGAGGGA 59.394 42.308 18.17 1.48 31.09 4.20
4217 4938 6.608002 AGGCTCTTATATTATAAGACGGAGGG 59.392 42.308 18.17 10.96 31.09 4.30
4218 4939 7.648039 AGGCTCTTATATTATAAGACGGAGG 57.352 40.000 18.17 11.50 31.09 4.30
4219 4940 9.930693 AAAAGGCTCTTATATTATAAGACGGAG 57.069 33.333 18.17 11.77 31.09 4.63
4229 4950 9.959721 AAGAGTGTCAAAAAGGCTCTTATATTA 57.040 29.630 0.00 0.00 42.54 0.98
4230 4951 8.870075 AAGAGTGTCAAAAAGGCTCTTATATT 57.130 30.769 0.00 0.00 42.54 1.28
4234 4955 9.959721 AATATAAGAGTGTCAAAAAGGCTCTTA 57.040 29.630 12.69 12.69 46.25 2.10
4235 4956 8.870075 AATATAAGAGTGTCAAAAAGGCTCTT 57.130 30.769 9.57 9.57 45.17 2.85
4238 4959 9.125026 CCATAATATAAGAGTGTCAAAAAGGCT 57.875 33.333 0.00 0.00 0.00 4.58
4239 4960 8.352942 CCCATAATATAAGAGTGTCAAAAAGGC 58.647 37.037 0.00 0.00 0.00 4.35
4240 4961 9.627123 TCCCATAATATAAGAGTGTCAAAAAGG 57.373 33.333 0.00 0.00 0.00 3.11
4242 4963 9.967451 TGTCCCATAATATAAGAGTGTCAAAAA 57.033 29.630 0.00 0.00 0.00 1.94
4243 4964 9.613428 CTGTCCCATAATATAAGAGTGTCAAAA 57.387 33.333 0.00 0.00 0.00 2.44
4244 4965 8.988060 TCTGTCCCATAATATAAGAGTGTCAAA 58.012 33.333 0.00 0.00 0.00 2.69
4245 4966 8.547481 TCTGTCCCATAATATAAGAGTGTCAA 57.453 34.615 0.00 0.00 0.00 3.18
4246 4967 7.233553 CCTCTGTCCCATAATATAAGAGTGTCA 59.766 40.741 0.00 0.00 0.00 3.58
4247 4968 7.310113 CCCTCTGTCCCATAATATAAGAGTGTC 60.310 44.444 0.00 0.00 0.00 3.67
4248 4969 6.498651 CCCTCTGTCCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
4249 4970 6.070538 CCCCTCTGTCCCATAATATAAGAGTG 60.071 46.154 0.00 0.00 0.00 3.51
4250 4971 6.026186 CCCCTCTGTCCCATAATATAAGAGT 58.974 44.000 0.00 0.00 0.00 3.24
4251 4972 5.426833 CCCCCTCTGTCCCATAATATAAGAG 59.573 48.000 0.00 0.00 0.00 2.85
4252 4973 5.162648 ACCCCCTCTGTCCCATAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
4253 4974 5.101529 ACCCCCTCTGTCCCATAATATAAG 58.898 45.833 0.00 0.00 0.00 1.73
4254 4975 5.114743 ACCCCCTCTGTCCCATAATATAA 57.885 43.478 0.00 0.00 0.00 0.98
4255 4976 4.796185 ACCCCCTCTGTCCCATAATATA 57.204 45.455 0.00 0.00 0.00 0.86
4256 4977 3.674358 ACCCCCTCTGTCCCATAATAT 57.326 47.619 0.00 0.00 0.00 1.28
4257 4978 4.796185 ATACCCCCTCTGTCCCATAATA 57.204 45.455 0.00 0.00 0.00 0.98
4258 4979 3.674358 ATACCCCCTCTGTCCCATAAT 57.326 47.619 0.00 0.00 0.00 1.28
4259 4980 3.448277 AATACCCCCTCTGTCCCATAA 57.552 47.619 0.00 0.00 0.00 1.90
4260 4981 3.448277 AAATACCCCCTCTGTCCCATA 57.552 47.619 0.00 0.00 0.00 2.74
4261 4982 2.244769 CAAAATACCCCCTCTGTCCCAT 59.755 50.000 0.00 0.00 0.00 4.00
4262 4983 1.638589 CAAAATACCCCCTCTGTCCCA 59.361 52.381 0.00 0.00 0.00 4.37
4263 4984 1.685180 GCAAAATACCCCCTCTGTCCC 60.685 57.143 0.00 0.00 0.00 4.46
4264 4985 1.005450 TGCAAAATACCCCCTCTGTCC 59.995 52.381 0.00 0.00 0.00 4.02
4265 4986 2.507407 TGCAAAATACCCCCTCTGTC 57.493 50.000 0.00 0.00 0.00 3.51
4266 4987 2.557452 CCTTGCAAAATACCCCCTCTGT 60.557 50.000 0.00 0.00 0.00 3.41
4267 4988 2.102578 CCTTGCAAAATACCCCCTCTG 58.897 52.381 0.00 0.00 0.00 3.35
4268 4989 1.619704 GCCTTGCAAAATACCCCCTCT 60.620 52.381 0.00 0.00 0.00 3.69
4269 4990 0.824109 GCCTTGCAAAATACCCCCTC 59.176 55.000 0.00 0.00 0.00 4.30
4270 4991 0.116143 TGCCTTGCAAAATACCCCCT 59.884 50.000 0.00 0.00 34.76 4.79
4271 4992 0.536724 CTGCCTTGCAAAATACCCCC 59.463 55.000 0.00 0.00 38.41 5.40
4272 4993 0.536724 CCTGCCTTGCAAAATACCCC 59.463 55.000 0.00 0.00 38.41 4.95
4273 4994 0.108186 GCCTGCCTTGCAAAATACCC 60.108 55.000 0.00 0.00 38.41 3.69
4274 4995 0.897621 AGCCTGCCTTGCAAAATACC 59.102 50.000 0.00 0.00 38.41 2.73
4275 4996 2.491693 TGTAGCCTGCCTTGCAAAATAC 59.508 45.455 0.00 0.00 38.41 1.89
4276 4997 2.801483 TGTAGCCTGCCTTGCAAAATA 58.199 42.857 0.00 0.00 38.41 1.40
4277 4998 1.631405 TGTAGCCTGCCTTGCAAAAT 58.369 45.000 0.00 0.00 38.41 1.82
4338 5062 9.982651 GAATAGGTGATCTAGCAACTATACAAA 57.017 33.333 6.24 0.00 45.51 2.83
4583 5309 2.906354 AGTCAAGCTAAGCCATAACGG 58.094 47.619 0.00 0.00 38.11 4.44
4699 5425 5.883661 TCGGCTTTGATTTGATCTTTGATC 58.116 37.500 0.00 0.98 0.00 2.92
5209 5935 0.179124 GCGATCTTCTCTTCACCGCT 60.179 55.000 0.00 0.00 38.36 5.52
5250 5976 9.620660 CTGTACAAAGTTAGTGAAAAACAACTT 57.379 29.630 0.00 0.00 39.59 2.66
5256 5982 7.769044 AGCTCTCTGTACAAAGTTAGTGAAAAA 59.231 33.333 0.00 0.00 0.00 1.94
5294 6020 3.317150 GAGCATTGCAAGTTTAACCCAC 58.683 45.455 11.91 0.00 0.00 4.61
5400 6138 6.316390 CCTCCTATTTTCACTGTAACACCATC 59.684 42.308 0.00 0.00 0.00 3.51
5424 6162 3.507622 CCTCAAATTTGGTTGGAGACTCC 59.492 47.826 17.90 15.13 39.84 3.85
5537 6321 5.807909 TGGACATCATGTCTTCAATTCTCA 58.192 37.500 17.46 0.87 46.19 3.27
5550 6334 0.107361 TGAGCCAGCTGGACATCATG 60.107 55.000 37.21 7.51 37.39 3.07
5555 6339 1.601759 GCTTTGAGCCAGCTGGACA 60.602 57.895 37.21 28.98 34.48 4.02
5662 6447 4.771590 TTTTGCATCTTTGTCTAGCTGG 57.228 40.909 0.00 0.00 0.00 4.85
5799 6585 1.407618 GGTTGGGACTGTTGTTGTTCC 59.592 52.381 0.00 0.00 33.72 3.62
5814 6606 1.210478 CCTCCCATCACACTAGGTTGG 59.790 57.143 0.00 0.00 0.00 3.77
5860 6653 7.177921 TGTGTAATGGACTAGTACTTGTAGCTT 59.822 37.037 10.02 6.54 31.37 3.74
5901 6694 3.753815 TGTTGATTGTTGAGATCTGCCA 58.246 40.909 0.00 0.00 0.00 4.92
5918 6711 1.811965 TGATGGTTCCGATGCTTGTTG 59.188 47.619 0.00 0.00 0.00 3.33
5922 6715 1.742761 CAGTGATGGTTCCGATGCTT 58.257 50.000 0.00 0.00 0.00 3.91
5927 6720 2.434185 GCGCAGTGATGGTTCCGA 60.434 61.111 0.30 0.00 0.00 4.55
5933 6726 1.446907 AGAAGAAAGCGCAGTGATGG 58.553 50.000 11.47 0.00 0.00 3.51
5984 6777 0.528924 GCCTCAGCATGTGCATCAAA 59.471 50.000 7.83 0.00 45.16 2.69
6005 6798 1.511464 GTCGCTCGTGGACAGTACG 60.511 63.158 0.00 0.00 42.56 3.67
6011 6804 2.179517 CCAGAGTCGCTCGTGGAC 59.820 66.667 14.23 0.00 33.66 4.02
6017 6810 2.124693 CCTCCTCCCAGAGTCGCTC 61.125 68.421 0.00 0.00 31.53 5.03
6020 6813 0.614979 TTTCCCTCCTCCCAGAGTCG 60.615 60.000 0.00 0.00 31.53 4.18
6032 6825 5.163457 TGTTTTGTGGTTCTTGATTTCCCTC 60.163 40.000 0.00 0.00 0.00 4.30
6038 6831 5.418840 ACACTCTGTTTTGTGGTTCTTGATT 59.581 36.000 0.00 0.00 38.39 2.57
6052 6845 1.540363 CGTACTGGCCACACTCTGTTT 60.540 52.381 0.00 0.00 0.00 2.83
6149 6942 2.945080 TGGCATCAATCAGGAGATCC 57.055 50.000 0.00 0.00 31.90 3.36
6152 6945 4.204799 CAAAGATGGCATCAATCAGGAGA 58.795 43.478 27.93 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.