Multiple sequence alignment - TraesCS6B01G240300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G240300
chr6B
100.000
4874
0
0
1
4874
419939234
419944107
0
9001
1
TraesCS6B01G240300
chr2B
93.961
4885
282
7
1
4874
158021964
158017082
0
7374
2
TraesCS6B01G240300
chr2B
93.741
4889
284
16
1
4874
208176383
208171502
0
7313
3
TraesCS6B01G240300
chrUn
93.614
4886
298
8
1
4874
131727272
131722389
0
7282
4
TraesCS6B01G240300
chrUn
93.594
4886
299
8
1
4874
4433394
4438277
0
7276
5
TraesCS6B01G240300
chr3B
93.616
4887
292
11
1
4874
515072682
515067803
0
7278
6
TraesCS6B01G240300
chr3B
93.428
4884
305
10
1
4874
515755107
515759984
0
7227
7
TraesCS6B01G240300
chr5B
93.449
4885
305
9
1
4874
208670026
208674906
0
7234
8
TraesCS6B01G240300
chr1B
93.391
4887
304
16
1
4874
364442154
364437274
0
7217
9
TraesCS6B01G240300
chr1B
93.370
4887
305
12
1
4874
201396923
201392043
0
7212
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G240300
chr6B
419939234
419944107
4873
False
9001
9001
100.000
1
4874
1
chr6B.!!$F1
4873
1
TraesCS6B01G240300
chr2B
158017082
158021964
4882
True
7374
7374
93.961
1
4874
1
chr2B.!!$R1
4873
2
TraesCS6B01G240300
chr2B
208171502
208176383
4881
True
7313
7313
93.741
1
4874
1
chr2B.!!$R2
4873
3
TraesCS6B01G240300
chrUn
131722389
131727272
4883
True
7282
7282
93.614
1
4874
1
chrUn.!!$R1
4873
4
TraesCS6B01G240300
chrUn
4433394
4438277
4883
False
7276
7276
93.594
1
4874
1
chrUn.!!$F1
4873
5
TraesCS6B01G240300
chr3B
515067803
515072682
4879
True
7278
7278
93.616
1
4874
1
chr3B.!!$R1
4873
6
TraesCS6B01G240300
chr3B
515755107
515759984
4877
False
7227
7227
93.428
1
4874
1
chr3B.!!$F1
4873
7
TraesCS6B01G240300
chr5B
208670026
208674906
4880
False
7234
7234
93.449
1
4874
1
chr5B.!!$F1
4873
8
TraesCS6B01G240300
chr1B
364437274
364442154
4880
True
7217
7217
93.391
1
4874
1
chr1B.!!$R2
4873
9
TraesCS6B01G240300
chr1B
201392043
201396923
4880
True
7212
7212
93.370
1
4874
1
chr1B.!!$R1
4873
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
910
917
0.107654
ATAACGAGACCAAGGCCTGC
60.108
55.0
5.69
0.00
0.00
4.85
F
1376
1383
0.038709
GAGCCGAAGATGATCGAGGG
60.039
60.0
0.00
1.35
45.48
4.30
F
2390
2403
0.399091
AGCTCATCTTCGGGGGATCA
60.399
55.0
0.00
0.00
0.00
2.92
F
3598
3611
0.179032
TGTCGTGGCTCATTTGTGGT
60.179
50.0
0.00
0.00
0.00
4.16
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2063
2072
0.609406
GGAGGTGGCTTTCCTGTTCC
60.609
60.0
1.69
0.00
35.20
3.62
R
3318
3331
0.037882
GCAGCAGAAAAGGCTTTCCC
60.038
55.0
13.76
8.46
41.72
3.97
R
3637
3650
0.250901
ACCGCATCAAGGAACTGCTT
60.251
50.0
0.00
0.00
40.86
3.91
R
4640
4662
0.906775
TACACATCCCCCGGTTTCTC
59.093
55.0
0.00
0.00
0.00
2.87
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
71
73
0.981183
AAGACAAGGGGCACGATGTA
59.019
50.000
1.13
0.00
0.00
2.29
155
159
7.290110
TGATGATATGGGTAGTACAAGAGTG
57.710
40.000
2.06
0.00
0.00
3.51
281
287
2.176889
GGCTAGGGTTACACAGAGTCA
58.823
52.381
0.00
0.00
0.00
3.41
351
357
0.322456
CGCCAAGGAAAGTCCCATCA
60.322
55.000
0.00
0.00
37.19
3.07
459
465
2.380590
AGTCCAGAACTCCCTCAGTAGT
59.619
50.000
0.00
0.00
32.30
2.73
471
477
2.557676
CCTCAGTAGTCCCTGAACCAGA
60.558
54.545
0.00
0.00
40.78
3.86
654
661
4.994217
TCAATCTGCTGACGTATTTTGTGA
59.006
37.500
0.00
0.00
0.00
3.58
740
747
2.561373
GAAGCGGTTTCCTTGGCG
59.439
61.111
0.00
0.00
0.00
5.69
910
917
0.107654
ATAACGAGACCAAGGCCTGC
60.108
55.000
5.69
0.00
0.00
4.85
926
933
2.165234
GCCTGCTCCTTTTCTTCAATCC
59.835
50.000
0.00
0.00
0.00
3.01
1005
1012
1.254026
TCGGACCTTCGACAATGTCT
58.746
50.000
11.92
0.00
33.92
3.41
1017
1024
0.742281
CAATGTCTGGCTCCGACCTG
60.742
60.000
7.89
0.00
0.00
4.00
1019
1026
4.803426
GTCTGGCTCCGACCTGCG
62.803
72.222
0.00
0.00
40.47
5.18
1066
1073
5.240891
TCACAGAAGAAGATGTGCTAAAGG
58.759
41.667
0.52
0.00
45.12
3.11
1071
1078
4.213564
AGAAGATGTGCTAAAGGTGAGG
57.786
45.455
0.00
0.00
0.00
3.86
1155
1162
2.681778
CCCGAGCCTGGTGAGAGT
60.682
66.667
0.00
0.00
0.00
3.24
1170
1177
0.104304
AGAGTGTGGTGTTCGTGTCC
59.896
55.000
0.00
0.00
0.00
4.02
1252
1259
5.645056
TTATGGGCTAGAATTCCATGACA
57.355
39.130
0.65
0.00
41.00
3.58
1293
1300
4.578871
TCCACATCTCATCGTTCATTGTT
58.421
39.130
0.00
0.00
0.00
2.83
1317
1324
2.665603
GAAGCCTTCCTCCGCACT
59.334
61.111
0.00
0.00
0.00
4.40
1320
1327
1.900545
AAGCCTTCCTCCGCACTACC
61.901
60.000
0.00
0.00
0.00
3.18
1376
1383
0.038709
GAGCCGAAGATGATCGAGGG
60.039
60.000
0.00
1.35
45.48
4.30
1377
1384
0.468214
AGCCGAAGATGATCGAGGGA
60.468
55.000
0.00
0.00
45.48
4.20
1416
1423
2.173569
AGGGGCAGTTATAAGCAAGAGG
59.826
50.000
0.00
0.00
0.00
3.69
1450
1457
2.859992
CCCGAGGGCTCTTTTCAAG
58.140
57.895
0.00
0.00
0.00
3.02
1497
1505
0.824759
GGTTCTACATCACCGCTCCT
59.175
55.000
0.00
0.00
0.00
3.69
1539
1547
4.394712
CCTGCCTTTCGCTCGGGT
62.395
66.667
0.00
0.00
38.78
5.28
1555
1563
2.741092
GTCCTCCACAACGGCTGA
59.259
61.111
0.00
0.00
33.14
4.26
1715
1724
4.016706
CAAACGTCGCCCCCTCCT
62.017
66.667
0.00
0.00
0.00
3.69
1776
1785
3.958147
CTTCATGGGTGCGACGCCT
62.958
63.158
18.69
0.00
33.98
5.52
1816
1825
4.456911
TGTTCTTTGGATCACAAGAGATGC
59.543
41.667
0.00
0.00
40.82
3.91
1817
1826
4.290711
TCTTTGGATCACAAGAGATGCA
57.709
40.909
0.00
0.00
43.34
3.96
1858
1867
2.823147
GCCTGAGCTGCAATCGCT
60.823
61.111
1.02
0.00
41.15
4.93
1862
1871
3.267860
GAGCTGCAATCGCTCGGG
61.268
66.667
10.30
0.00
43.69
5.14
1877
1886
3.127548
CGCTCGGGTACTCAAGTAAGTAA
59.872
47.826
0.00
0.00
33.68
2.24
1943
1952
3.555966
CCTTTAACCAGCTATCCCTTGG
58.444
50.000
0.00
0.00
37.98
3.61
1945
1954
4.141158
CCTTTAACCAGCTATCCCTTGGAT
60.141
45.833
0.65
0.65
45.40
3.41
1971
1980
5.183140
GGAGTGGATAGCAAAAGCAAAACTA
59.817
40.000
0.00
0.00
0.00
2.24
2013
2022
4.222847
GAGACCACGCCGGATCCC
62.223
72.222
5.05
0.00
38.63
3.85
2063
2072
3.798511
GGAAGAGGGCGAAGGGGG
61.799
72.222
0.00
0.00
0.00
5.40
2085
2097
4.035102
AGGAAAGCCACCTCCGCC
62.035
66.667
0.00
0.00
36.78
6.13
2129
2142
0.764752
ATCGACAATCCCTCCCTCCC
60.765
60.000
0.00
0.00
0.00
4.30
2155
2168
2.183679
AGAAGAGGACCGCTTCTGAAT
58.816
47.619
32.25
14.15
45.86
2.57
2181
2194
2.672996
GCCAAGGCCTCAAAGCGA
60.673
61.111
5.23
0.00
34.56
4.93
2275
2288
0.454600
CTCCAGCGAGCCGTAAGTAA
59.545
55.000
0.00
0.00
0.00
2.24
2390
2403
0.399091
AGCTCATCTTCGGGGGATCA
60.399
55.000
0.00
0.00
0.00
2.92
2431
2444
1.475034
GCGAAATACCTCCATCTGCCA
60.475
52.381
0.00
0.00
0.00
4.92
2447
2460
1.455849
CCATACCATCATGCGGGGT
59.544
57.895
7.30
7.51
38.70
4.95
2675
2688
2.435410
GGGGTTTGAGGTACGCGG
60.435
66.667
12.47
0.00
0.00
6.46
2734
2747
3.622630
CGCCCTGTATAGATAGTAGCCT
58.377
50.000
0.00
0.00
0.00
4.58
2735
2748
3.378742
CGCCCTGTATAGATAGTAGCCTG
59.621
52.174
0.00
0.00
0.00
4.85
2796
2809
6.865726
CGAGGATCATAATCTCAGTTGTAAGG
59.134
42.308
0.00
0.00
33.17
2.69
2866
2879
2.290260
TGATGGAGTTGCCGAACTGAAT
60.290
45.455
0.00
0.00
42.80
2.57
2913
2926
1.396648
CATCGCGCTGGTCAATAAACA
59.603
47.619
5.56
0.00
0.00
2.83
3082
3095
2.422127
GCCAGAAAAAGTAATGCGGCTA
59.578
45.455
0.00
0.00
35.39
3.93
3150
3163
1.747355
CGAAGCATTGAGGAAATGGCT
59.253
47.619
0.67
0.00
45.05
4.75
3157
3170
4.382254
GCATTGAGGAAATGGCTGAAATGA
60.382
41.667
0.00
0.00
45.05
2.57
3209
3222
6.146184
CGCTATGAGTTTCTTGAAAGAGAACA
59.854
38.462
14.69
7.19
35.50
3.18
3216
3229
5.524971
TTCTTGAAAGAGAACACCGAGTA
57.475
39.130
0.00
0.00
36.22
2.59
3225
3238
2.891580
AGAACACCGAGTAGAGCAAGAA
59.108
45.455
0.00
0.00
0.00
2.52
3247
3260
1.455849
CTGAAGAAGGCCACCACCA
59.544
57.895
5.01
0.00
0.00
4.17
3264
3277
1.978617
CAAAGCCAAGGATGCCCGT
60.979
57.895
0.00
0.00
37.58
5.28
3304
3317
4.704103
AGGAGCTCCGTCAGGCCA
62.704
66.667
26.95
0.00
42.08
5.36
3318
3331
3.357079
GCCAGGGATATTGCGGCG
61.357
66.667
0.51
0.51
32.14
6.46
3359
3372
4.045104
CGTAGGAAATTCACGGATCTGAG
58.955
47.826
9.00
0.00
32.19
3.35
3598
3611
0.179032
TGTCGTGGCTCATTTGTGGT
60.179
50.000
0.00
0.00
0.00
4.16
3637
3650
4.215399
CGAAGAGTTATTTTGGCTTGGTGA
59.785
41.667
0.00
0.00
0.00
4.02
3838
3851
1.011333
GCAGGGCGCTCGTTTAATAA
58.989
50.000
7.64
0.00
37.77
1.40
3846
3859
3.722665
GCGCTCGTTTAATAAAGACGCAA
60.723
43.478
0.00
0.00
39.44
4.85
3940
3958
2.823196
CTTGTGCGTTCAAGTGTTGA
57.177
45.000
11.57
0.00
39.66
3.18
3955
3973
5.048846
AGTGTTGAAAATACCTCCTGTGT
57.951
39.130
0.00
0.00
38.90
3.72
4003
4022
2.354103
CCTGAAAGATGGCAGTCTTCGA
60.354
50.000
11.01
0.00
37.46
3.71
4177
4198
2.522185
TCGATGGTGGGGCTACTATAC
58.478
52.381
0.00
0.00
0.00
1.47
4238
4259
2.063015
ATGTGCCTGACCGGGAAACA
62.063
55.000
6.32
1.48
33.53
2.83
4262
4284
3.756434
TCCTTGTTAAAGCGGAGGAATTG
59.244
43.478
0.00
0.00
33.77
2.32
4272
4294
4.589908
AGCGGAGGAATTGTAAACATTCT
58.410
39.130
0.00
0.00
0.00
2.40
4279
4301
5.838521
AGGAATTGTAAACATTCTGGTGGTT
59.161
36.000
0.00
0.00
32.84
3.67
4292
4314
1.972075
TGGTGGTTGATCGAGTGGTTA
59.028
47.619
0.00
0.00
0.00
2.85
4352
4374
2.586648
TCTCTACTGAGGTGCTCACA
57.413
50.000
2.21
0.00
40.58
3.58
4357
4379
1.130054
ACTGAGGTGCTCACATGGGT
61.130
55.000
0.00
0.00
35.39
4.51
4506
4528
4.218852
GCATATAAGGCCTAACTCGAGACT
59.781
45.833
21.68
8.26
0.00
3.24
4521
4543
2.657143
GAGACTCCGAACACTCCCTAT
58.343
52.381
0.00
0.00
0.00
2.57
4542
4564
7.387948
CCCTATGGTATTCGGTCTTTATGAAAG
59.612
40.741
0.00
0.00
39.88
2.62
4581
4603
0.642710
AGCCCCTAGTGTCCAGGTAT
59.357
55.000
0.00
0.00
0.00
2.73
4585
4607
0.389391
CCTAGTGTCCAGGTATGCGG
59.611
60.000
0.00
0.00
0.00
5.69
4637
4659
1.202580
CCAGCTTCCTCCTCGGTTATG
60.203
57.143
0.00
0.00
0.00
1.90
4639
4661
0.831307
GCTTCCTCCTCGGTTATGGT
59.169
55.000
0.00
0.00
0.00
3.55
4640
4662
1.473434
GCTTCCTCCTCGGTTATGGTG
60.473
57.143
0.00
0.00
0.00
4.17
4642
4666
1.776662
TCCTCCTCGGTTATGGTGAG
58.223
55.000
0.00
0.00
0.00
3.51
4736
4760
1.839747
AACGGGTCCCTACTGCACA
60.840
57.895
6.29
0.00
0.00
4.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
52
54
0.981183
TACATCGTGCCCCTTGTCTT
59.019
50.000
0.00
0.00
0.00
3.01
62
64
2.914059
ACCTGGGTAAATACATCGTGC
58.086
47.619
0.00
0.00
0.00
5.34
177
181
3.996957
AGGCTAGCTTCTAGGGTTTAGT
58.003
45.455
15.72
0.00
0.00
2.24
281
287
9.830186
ATATGTAGATCTCCTACCATTGTAACT
57.170
33.333
0.00
0.00
45.60
2.24
351
357
0.826672
AAGACTTCGTCCCGTGTCCT
60.827
55.000
0.00
0.00
34.39
3.85
445
451
1.717077
TCAGGGACTACTGAGGGAGTT
59.283
52.381
0.00
0.00
42.26
3.01
459
465
2.978978
TCATTGAAGTCTGGTTCAGGGA
59.021
45.455
0.00
0.00
37.72
4.20
471
477
2.417379
CCGGACTCGTCATCATTGAAGT
60.417
50.000
0.00
0.00
33.63
3.01
654
661
0.459585
GCCGTGGTGTGACGTCATAT
60.460
55.000
23.12
0.00
37.66
1.78
740
747
0.319040
TCTCTGCTGTGACAAGACGC
60.319
55.000
0.00
0.00
0.00
5.19
910
917
5.877012
TCGATTGAGGATTGAAGAAAAGGAG
59.123
40.000
0.00
0.00
0.00
3.69
926
933
1.539065
CGAGGGGTGGATTCGATTGAG
60.539
57.143
0.00
0.00
36.49
3.02
1027
1034
1.064463
TGTGATGGAAGAAGGCATCCC
60.064
52.381
0.00
0.00
34.68
3.85
1066
1073
1.043673
AGATACCTGGCGTCCCTCAC
61.044
60.000
0.00
0.00
0.00
3.51
1071
1078
0.031721
CGGTTAGATACCTGGCGTCC
59.968
60.000
0.00
0.00
45.40
4.79
1117
1124
1.147817
AGTGGGAATGACTTGCCCTTT
59.852
47.619
5.97
0.00
41.96
3.11
1155
1162
3.310652
TGGGACACGAACACCACA
58.689
55.556
0.00
0.00
0.00
4.17
1252
1259
2.143419
GGATGGACTCCGGAGCCAT
61.143
63.158
38.57
38.57
43.22
4.40
1293
1300
0.178068
GGAGGAAGGCTTCGCATACA
59.822
55.000
20.26
0.00
0.00
2.29
1313
1320
1.218316
CCGAAGTGAGGGGTAGTGC
59.782
63.158
0.00
0.00
0.00
4.40
1317
1324
1.553248
CACAATCCGAAGTGAGGGGTA
59.447
52.381
0.00
0.00
37.97
3.69
1320
1327
1.026718
GCCACAATCCGAAGTGAGGG
61.027
60.000
6.04
0.00
37.97
4.30
1448
1455
1.986882
CCACAAACCAAGCTCCTCTT
58.013
50.000
0.00
0.00
34.78
2.85
1450
1457
0.823356
TGCCACAAACCAAGCTCCTC
60.823
55.000
0.00
0.00
0.00
3.71
1458
1466
0.033601
ACTCCTGTTGCCACAAACCA
60.034
50.000
0.00
0.00
30.36
3.67
1539
1547
2.741092
GTCAGCCGTTGTGGAGGA
59.259
61.111
0.00
0.00
42.00
3.71
1555
1563
1.604604
CCTTTGTTGACCCATGACGT
58.395
50.000
0.00
0.00
0.00
4.34
1644
1653
2.034179
CGCCACTACGACCAGATTGATA
59.966
50.000
0.00
0.00
34.06
2.15
1715
1724
1.064758
CCGGATTGAATTCCCACAGGA
60.065
52.381
0.00
0.00
41.88
3.86
1776
1785
7.390440
CCAAAGAACAGTTTATACATCTCCACA
59.610
37.037
0.00
0.00
0.00
4.17
1858
1867
5.359009
CAGGATTACTTACTTGAGTACCCGA
59.641
44.000
0.00
0.00
33.60
5.14
1862
1871
5.811100
GGCACAGGATTACTTACTTGAGTAC
59.189
44.000
0.00
0.00
32.12
2.73
1971
1980
3.789290
GGGGCCGGACACCGTATT
61.789
66.667
11.00
0.00
46.80
1.89
2013
2022
2.868583
CTCCAGCATCCTGATTAACACG
59.131
50.000
0.00
0.00
41.77
4.49
2063
2072
0.609406
GGAGGTGGCTTTCCTGTTCC
60.609
60.000
1.69
0.00
35.20
3.62
2085
2097
1.615384
CCTTTCTTGAGGGCCTCCTTG
60.615
57.143
30.03
19.04
45.05
3.61
2115
2128
3.666122
CCAGGGAGGGAGGGATTG
58.334
66.667
0.00
0.00
0.00
2.67
2129
2142
2.726351
GCGGTCCTCTTCTCCCCAG
61.726
68.421
0.00
0.00
0.00
4.45
2155
2168
1.004758
AGGCCTTGGCCTCTGGATA
59.995
57.895
26.23
0.00
34.71
2.59
2275
2288
6.495872
GTCCCTTATTACAAAACTCCCCTTTT
59.504
38.462
0.00
0.00
0.00
2.27
2334
2347
5.578005
TGAGATCCGAACTACAAGGTAAG
57.422
43.478
0.00
0.00
0.00
2.34
2390
2403
1.202940
TCTCCATCATCTCCGGACGAT
60.203
52.381
0.00
5.23
0.00
3.73
2431
2444
1.059584
TCCACCCCGCATGATGGTAT
61.060
55.000
0.00
0.00
33.67
2.73
2447
2460
1.906824
GACACCTCAGGGTCGTCCA
60.907
63.158
0.00
0.00
45.41
4.02
2500
2513
2.925170
AGTTGGCGCCAGACCTCT
60.925
61.111
30.75
19.50
0.00
3.69
2502
2515
4.335647
CCAGTTGGCGCCAGACCT
62.336
66.667
30.75
22.75
0.00
3.85
2511
2524
2.025418
CGACCGTACACCAGTTGGC
61.025
63.158
0.00
0.00
39.32
4.52
2675
2688
9.994432
CAAAACTGTCAGAAGGTATATCATTTC
57.006
33.333
6.91
0.00
0.00
2.17
2734
2747
1.265095
GACAACGTACCGAGTCTCACA
59.735
52.381
0.00
0.00
34.66
3.58
2735
2748
1.724018
CGACAACGTACCGAGTCTCAC
60.724
57.143
0.00
0.00
35.05
3.51
2796
2809
2.510768
CTGTATAGGAAGGGCGACAC
57.489
55.000
0.00
0.00
0.00
3.67
2913
2926
2.981859
ACCTTGTGACTCGTCAAGTT
57.018
45.000
0.64
0.00
41.85
2.66
3055
3068
3.676646
GCATTACTTTTTCTGGCTTGCTG
59.323
43.478
0.00
0.00
0.00
4.41
3082
3095
3.901797
CTTCGGCCGCCTTCAAGGT
62.902
63.158
23.51
0.00
37.80
3.50
3137
3150
3.511146
GGTCATTTCAGCCATTTCCTCAA
59.489
43.478
0.00
0.00
0.00
3.02
3138
3151
3.091545
GGTCATTTCAGCCATTTCCTCA
58.908
45.455
0.00
0.00
0.00
3.86
3150
3163
2.542020
TCAGCTTCACGGTCATTTCA
57.458
45.000
0.00
0.00
0.00
2.69
3157
3170
0.674895
GCATCCTTCAGCTTCACGGT
60.675
55.000
0.00
0.00
0.00
4.83
3209
3222
1.819903
GGTCTTCTTGCTCTACTCGGT
59.180
52.381
0.00
0.00
0.00
4.69
3216
3229
3.007831
CCTTCTTCAGGTCTTCTTGCTCT
59.992
47.826
0.00
0.00
37.99
4.09
3264
3277
1.334160
TTATAGCCCTCATCGCGGAA
58.666
50.000
6.13
0.00
0.00
4.30
3304
3317
1.990160
TTTCCCGCCGCAATATCCCT
61.990
55.000
0.00
0.00
0.00
4.20
3318
3331
0.037882
GCAGCAGAAAAGGCTTTCCC
60.038
55.000
13.76
8.46
41.72
3.97
3359
3372
0.749454
CTGGCCCAACTGAGCATACC
60.749
60.000
0.00
0.00
0.00
2.73
3637
3650
0.250901
ACCGCATCAAGGAACTGCTT
60.251
50.000
0.00
0.00
40.86
3.91
3838
3851
3.236816
CATTTTTCGAGCATTGCGTCTT
58.763
40.909
2.38
0.00
0.00
3.01
3846
3859
8.649841
CATTTGAACATAACATTTTTCGAGCAT
58.350
29.630
0.00
0.00
0.00
3.79
3909
3927
4.276183
TGAACGCACAAGTATAAAAAGCCA
59.724
37.500
0.00
0.00
0.00
4.75
3940
3958
1.613255
CGGCCACACAGGAGGTATTTT
60.613
52.381
2.24
0.00
41.22
1.82
4003
4022
4.643387
GTGCGTGGGGGCTGAAGT
62.643
66.667
0.00
0.00
0.00
3.01
4050
4071
5.587043
AGACGTTGGATTAAGTGTGAAAACA
59.413
36.000
0.00
0.00
0.00
2.83
4051
4072
6.056428
AGACGTTGGATTAAGTGTGAAAAC
57.944
37.500
0.00
0.00
0.00
2.43
4217
4238
0.916086
TTTCCCGGTCAGGCACATAT
59.084
50.000
0.00
0.00
39.21
1.78
4238
4259
1.975680
TCCTCCGCTTTAACAAGGACT
59.024
47.619
0.00
0.00
31.25
3.85
4262
4284
4.693566
TCGATCAACCACCAGAATGTTTAC
59.306
41.667
0.00
0.00
0.00
2.01
4272
4294
0.762418
AACCACTCGATCAACCACCA
59.238
50.000
0.00
0.00
0.00
4.17
4279
4301
3.162666
AGACTGGTTAACCACTCGATCA
58.837
45.455
23.69
0.00
42.01
2.92
4292
4314
6.434340
TGTCATGATATAGCGATAGACTGGTT
59.566
38.462
0.00
0.00
39.76
3.67
4301
4323
5.973899
ACTGACTGTCATGATATAGCGAT
57.026
39.130
11.45
0.00
0.00
4.58
4352
4374
4.360405
GTGCCCCGGTTCACCCAT
62.360
66.667
11.11
0.00
0.00
4.00
4357
4379
2.359354
CGATTGTGCCCCGGTTCA
60.359
61.111
0.00
0.00
0.00
3.18
4454
4476
5.673818
GCTCCGAATCATGTCTTTGGTAAAC
60.674
44.000
13.41
3.30
0.00
2.01
4457
4479
3.197766
AGCTCCGAATCATGTCTTTGGTA
59.802
43.478
13.41
4.34
0.00
3.25
4506
4528
2.832643
TACCATAGGGAGTGTTCGGA
57.167
50.000
0.00
0.00
38.05
4.55
4521
4543
4.569162
CGCTTTCATAAAGACCGAATACCA
59.431
41.667
3.63
0.00
41.02
3.25
4581
4603
2.287308
CCACGTCAGAAATTTTTCCGCA
60.287
45.455
0.00
0.00
37.92
5.69
4585
4607
2.031508
TCGGCCACGTCAGAAATTTTTC
60.032
45.455
2.24
0.00
41.85
2.29
4637
4659
1.077716
CATCCCCCGGTTTCTCACC
60.078
63.158
0.00
0.00
43.16
4.02
4639
4661
1.131303
ACACATCCCCCGGTTTCTCA
61.131
55.000
0.00
0.00
0.00
3.27
4640
4662
0.906775
TACACATCCCCCGGTTTCTC
59.093
55.000
0.00
0.00
0.00
2.87
4642
4666
1.210967
TGATACACATCCCCCGGTTTC
59.789
52.381
0.00
0.00
0.00
2.78
4677
4701
2.180432
AGACCCTGCGTAAACCTTTC
57.820
50.000
0.00
0.00
0.00
2.62
4736
4760
2.581354
GGAGACACAGGCGCAGAT
59.419
61.111
10.83
0.00
0.00
2.90
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.