Multiple sequence alignment - TraesCS6B01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G240000 chr6B 100.000 1516 0 0 1 1516 417349612 417348097 0.000000e+00 2800.0
1 TraesCS6B01G240000 chr6B 100.000 626 0 0 1778 2403 417347835 417347210 0.000000e+00 1157.0
2 TraesCS6B01G240000 chr6B 86.137 541 75 0 2 542 82429196 82428656 3.440000e-163 584.0
3 TraesCS6B01G240000 chr6A 95.361 927 30 9 599 1516 383490676 383489754 0.000000e+00 1461.0
4 TraesCS6B01G240000 chr6A 90.698 43 4 0 1778 1820 383489629 383489587 9.280000e-05 58.4
5 TraesCS6B01G240000 chr6D 95.423 874 32 5 599 1466 269236699 269235828 0.000000e+00 1386.0
6 TraesCS6B01G240000 chr6D 92.899 169 9 3 2236 2401 269235593 269235425 2.390000e-60 243.0
7 TraesCS6B01G240000 chr6D 96.429 56 2 0 1461 1516 269235791 269235736 2.540000e-15 93.5
8 TraesCS6B01G240000 chr6D 97.674 43 1 0 1778 1820 269235637 269235595 9.210000e-10 75.0
9 TraesCS6B01G240000 chr3A 89.299 542 58 0 1 542 558700171 558699630 0.000000e+00 680.0
10 TraesCS6B01G240000 chr5B 86.876 541 71 0 2 542 293311029 293310489 7.350000e-170 606.0
11 TraesCS6B01G240000 chr4B 84.686 542 83 0 1 542 379437498 379438039 2.100000e-150 542.0
12 TraesCS6B01G240000 chr4B 85.519 511 73 1 1 511 630134801 630134292 1.260000e-147 532.0
13 TraesCS6B01G240000 chr5A 91.495 388 33 0 1 388 605065781 605065394 3.520000e-148 534.0
14 TraesCS6B01G240000 chrUn 85.519 511 73 1 1 511 343739589 343740098 1.260000e-147 532.0
15 TraesCS6B01G240000 chrUn 85.323 511 74 1 1 511 404917136 404916627 5.880000e-146 527.0
16 TraesCS6B01G240000 chrUn 88.194 288 33 1 224 511 465033784 465034070 2.290000e-90 342.0
17 TraesCS6B01G240000 chr7D 85.748 421 38 13 1829 2236 629584951 629584540 2.210000e-115 425.0
18 TraesCS6B01G240000 chr7D 78.349 545 112 5 1 542 479754061 479754602 4.920000e-92 348.0
19 TraesCS6B01G240000 chr3B 84.864 403 45 9 1844 2236 632198482 632198878 2.240000e-105 392.0
20 TraesCS6B01G240000 chr3B 84.000 400 42 11 1845 2236 331414931 331415316 4.880000e-97 364.0
21 TraesCS6B01G240000 chr3B 84.986 353 38 7 1892 2237 5260702 5261046 6.360000e-91 344.0
22 TraesCS6B01G240000 chr1D 86.875 320 31 4 1924 2236 426172441 426172756 4.920000e-92 348.0
23 TraesCS6B01G240000 chr1A 85.714 343 29 11 1906 2237 506852980 506853313 6.360000e-91 344.0
24 TraesCS6B01G240000 chr4D 81.841 402 51 14 1844 2231 39851880 39851487 3.850000e-83 318.0
25 TraesCS6B01G240000 chr2D 81.975 405 45 19 1844 2231 130759880 130760273 3.850000e-83 318.0
26 TraesCS6B01G240000 chr1B 80.750 400 56 12 1844 2231 513429821 513430211 2.340000e-75 292.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G240000 chr6B 417347210 417349612 2402 True 1978.500 2800 100.00000 1 2403 2 chr6B.!!$R2 2402
1 TraesCS6B01G240000 chr6B 82428656 82429196 540 True 584.000 584 86.13700 2 542 1 chr6B.!!$R1 540
2 TraesCS6B01G240000 chr6A 383489587 383490676 1089 True 759.700 1461 93.02950 599 1820 2 chr6A.!!$R1 1221
3 TraesCS6B01G240000 chr6D 269235425 269236699 1274 True 449.375 1386 95.60625 599 2401 4 chr6D.!!$R1 1802
4 TraesCS6B01G240000 chr3A 558699630 558700171 541 True 680.000 680 89.29900 1 542 1 chr3A.!!$R1 541
5 TraesCS6B01G240000 chr5B 293310489 293311029 540 True 606.000 606 86.87600 2 542 1 chr5B.!!$R1 540
6 TraesCS6B01G240000 chr4B 379437498 379438039 541 False 542.000 542 84.68600 1 542 1 chr4B.!!$F1 541
7 TraesCS6B01G240000 chr4B 630134292 630134801 509 True 532.000 532 85.51900 1 511 1 chr4B.!!$R1 510
8 TraesCS6B01G240000 chrUn 343739589 343740098 509 False 532.000 532 85.51900 1 511 1 chrUn.!!$F1 510
9 TraesCS6B01G240000 chrUn 404916627 404917136 509 True 527.000 527 85.32300 1 511 1 chrUn.!!$R1 510
10 TraesCS6B01G240000 chr7D 479754061 479754602 541 False 348.000 348 78.34900 1 542 1 chr7D.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 605 0.036952 CGCTGGAGTGTGGAAGACAT 60.037 55.0 0.0 0.0 36.78 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 1895 0.034059 AGCTCAGGACCAGAAACACG 59.966 55.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.498887 CAGCGCGTGTTTTACCGC 60.499 61.111 8.43 0.00 44.16 5.68
97 98 2.198827 TTCCATGGCACGATCAAACT 57.801 45.000 6.96 0.00 0.00 2.66
131 132 3.319755 AGTTTGCAATGGCGATTTGAAG 58.680 40.909 0.00 0.00 45.35 3.02
144 145 4.923281 GCGATTTGAAGTTTAATGTTGCCT 59.077 37.500 0.00 0.00 0.00 4.75
152 153 3.502211 AGTTTAATGTTGCCTGTCTTCCG 59.498 43.478 0.00 0.00 0.00 4.30
180 181 3.896479 GCTTGTAGAGCCACAGCC 58.104 61.111 0.00 0.00 46.01 4.85
185 186 1.446272 GTAGAGCCACAGCCGTGTC 60.446 63.158 0.00 0.00 41.93 3.67
348 349 5.304614 GGCTGAGGTAGTTAGATGTAATGGA 59.695 44.000 0.00 0.00 0.00 3.41
351 352 7.230913 GCTGAGGTAGTTAGATGTAATGGAGTA 59.769 40.741 0.00 0.00 0.00 2.59
353 354 9.656323 TGAGGTAGTTAGATGTAATGGAGTATT 57.344 33.333 0.00 0.00 0.00 1.89
423 424 2.273179 TTCCCAGTCCACCGAGACG 61.273 63.158 0.00 0.00 41.83 4.18
447 448 3.542875 GCACACGATCAATCTTCGTCATG 60.543 47.826 0.00 0.11 46.13 3.07
500 501 8.370940 CGTAAATCTCCTCCCATGCATATATAT 58.629 37.037 0.00 0.00 0.00 0.86
542 543 4.065088 TCAACAAACTCCTTGAATCTCCG 58.935 43.478 0.00 0.00 38.50 4.63
543 544 3.771577 ACAAACTCCTTGAATCTCCGT 57.228 42.857 0.00 0.00 38.50 4.69
544 545 3.403038 ACAAACTCCTTGAATCTCCGTG 58.597 45.455 0.00 0.00 38.50 4.94
545 546 3.071023 ACAAACTCCTTGAATCTCCGTGA 59.929 43.478 0.00 0.00 38.50 4.35
546 547 3.601443 AACTCCTTGAATCTCCGTGAG 57.399 47.619 0.00 0.00 0.00 3.51
547 548 2.530701 ACTCCTTGAATCTCCGTGAGT 58.469 47.619 1.60 0.00 0.00 3.41
548 549 2.494073 ACTCCTTGAATCTCCGTGAGTC 59.506 50.000 1.60 0.00 39.93 3.36
549 550 2.493675 CTCCTTGAATCTCCGTGAGTCA 59.506 50.000 2.45 2.45 46.35 3.41
553 554 3.744238 TGAATCTCCGTGAGTCAACAA 57.256 42.857 0.00 0.00 45.26 2.83
554 555 4.066646 TGAATCTCCGTGAGTCAACAAA 57.933 40.909 0.00 0.00 45.26 2.83
555 556 3.807622 TGAATCTCCGTGAGTCAACAAAC 59.192 43.478 0.00 0.00 45.26 2.93
556 557 3.753294 ATCTCCGTGAGTCAACAAACT 57.247 42.857 0.00 0.00 0.00 2.66
557 558 3.093717 TCTCCGTGAGTCAACAAACTC 57.906 47.619 0.00 0.00 44.87 3.01
558 559 2.135933 CTCCGTGAGTCAACAAACTCC 58.864 52.381 0.00 0.00 44.17 3.85
559 560 1.760613 TCCGTGAGTCAACAAACTCCT 59.239 47.619 0.00 0.00 44.17 3.69
560 561 2.169769 TCCGTGAGTCAACAAACTCCTT 59.830 45.455 0.00 0.00 44.17 3.36
561 562 2.287915 CCGTGAGTCAACAAACTCCTTG 59.712 50.000 0.00 0.00 44.17 3.61
562 563 3.194861 CGTGAGTCAACAAACTCCTTGA 58.805 45.455 0.00 0.00 44.17 3.02
563 564 3.621268 CGTGAGTCAACAAACTCCTTGAA 59.379 43.478 0.00 0.00 44.17 2.69
564 565 4.273480 CGTGAGTCAACAAACTCCTTGAAT 59.727 41.667 0.00 0.00 44.17 2.57
565 566 5.559035 CGTGAGTCAACAAACTCCTTGAATC 60.559 44.000 0.00 0.00 44.17 2.52
566 567 5.529060 GTGAGTCAACAAACTCCTTGAATCT 59.471 40.000 0.00 0.00 44.17 2.40
567 568 5.760253 TGAGTCAACAAACTCCTTGAATCTC 59.240 40.000 8.71 1.88 44.17 2.75
568 569 5.066593 AGTCAACAAACTCCTTGAATCTCC 58.933 41.667 0.00 0.00 38.50 3.71
569 570 4.821805 GTCAACAAACTCCTTGAATCTCCA 59.178 41.667 0.00 0.00 38.50 3.86
570 571 5.299279 GTCAACAAACTCCTTGAATCTCCAA 59.701 40.000 0.00 0.00 38.50 3.53
571 572 5.532406 TCAACAAACTCCTTGAATCTCCAAG 59.468 40.000 0.00 0.00 42.28 3.61
572 573 5.053978 ACAAACTCCTTGAATCTCCAAGT 57.946 39.130 0.00 0.00 41.34 3.16
573 574 5.066593 ACAAACTCCTTGAATCTCCAAGTC 58.933 41.667 0.00 0.00 41.34 3.01
574 575 4.982241 AACTCCTTGAATCTCCAAGTCA 57.018 40.909 0.00 0.00 41.34 3.41
575 576 4.550076 ACTCCTTGAATCTCCAAGTCAG 57.450 45.455 0.00 0.00 41.34 3.51
576 577 4.163427 ACTCCTTGAATCTCCAAGTCAGA 58.837 43.478 0.00 0.00 41.34 3.27
577 578 4.222588 ACTCCTTGAATCTCCAAGTCAGAG 59.777 45.833 0.00 0.00 41.34 3.35
578 579 4.163427 TCCTTGAATCTCCAAGTCAGAGT 58.837 43.478 0.00 0.00 41.34 3.24
579 580 4.221703 TCCTTGAATCTCCAAGTCAGAGTC 59.778 45.833 0.00 0.00 41.34 3.36
580 581 4.020751 CCTTGAATCTCCAAGTCAGAGTCA 60.021 45.833 0.00 0.00 41.87 3.41
581 582 4.527509 TGAATCTCCAAGTCAGAGTCAC 57.472 45.455 0.00 0.00 39.45 3.67
582 583 3.259374 TGAATCTCCAAGTCAGAGTCACC 59.741 47.826 0.00 0.00 39.45 4.02
583 584 1.633774 TCTCCAAGTCAGAGTCACCC 58.366 55.000 0.00 0.00 32.93 4.61
584 585 1.148027 TCTCCAAGTCAGAGTCACCCT 59.852 52.381 0.00 0.00 32.93 4.34
585 586 1.548269 CTCCAAGTCAGAGTCACCCTC 59.452 57.143 0.00 0.00 40.80 4.30
586 587 0.244994 CCAAGTCAGAGTCACCCTCG 59.755 60.000 0.00 0.00 45.44 4.63
587 588 0.389166 CAAGTCAGAGTCACCCTCGC 60.389 60.000 0.00 0.00 45.44 5.03
588 589 0.540830 AAGTCAGAGTCACCCTCGCT 60.541 55.000 0.00 0.00 45.44 4.93
589 590 1.214062 GTCAGAGTCACCCTCGCTG 59.786 63.158 0.00 0.00 45.44 5.18
590 591 1.979155 TCAGAGTCACCCTCGCTGG 60.979 63.158 0.00 0.00 45.44 4.85
591 592 1.979155 CAGAGTCACCCTCGCTGGA 60.979 63.158 0.00 0.00 45.44 3.86
592 593 1.680651 AGAGTCACCCTCGCTGGAG 60.681 63.158 0.00 0.00 45.44 3.86
593 594 1.979693 GAGTCACCCTCGCTGGAGT 60.980 63.158 0.00 0.00 38.70 3.85
594 595 2.219325 GAGTCACCCTCGCTGGAGTG 62.219 65.000 0.00 4.00 38.70 3.51
595 596 2.203640 TCACCCTCGCTGGAGTGT 60.204 61.111 11.98 0.00 38.70 3.55
596 597 2.047844 CACCCTCGCTGGAGTGTG 60.048 66.667 0.00 0.00 41.23 3.82
597 598 3.314331 ACCCTCGCTGGAGTGTGG 61.314 66.667 1.96 1.96 38.70 4.17
598 599 2.997315 CCCTCGCTGGAGTGTGGA 60.997 66.667 9.40 0.00 40.53 4.02
599 600 2.583441 CCCTCGCTGGAGTGTGGAA 61.583 63.158 9.40 0.00 40.53 3.53
600 601 1.079543 CCTCGCTGGAGTGTGGAAG 60.080 63.158 2.71 0.00 40.53 3.46
601 602 1.536073 CCTCGCTGGAGTGTGGAAGA 61.536 60.000 2.71 0.00 40.53 2.87
602 603 0.389166 CTCGCTGGAGTGTGGAAGAC 60.389 60.000 0.00 0.00 35.48 3.01
603 604 1.112916 TCGCTGGAGTGTGGAAGACA 61.113 55.000 0.00 0.00 28.79 3.41
604 605 0.036952 CGCTGGAGTGTGGAAGACAT 60.037 55.000 0.00 0.00 36.78 3.06
605 606 1.446907 GCTGGAGTGTGGAAGACATG 58.553 55.000 0.00 0.00 36.78 3.21
606 607 1.002430 GCTGGAGTGTGGAAGACATGA 59.998 52.381 0.00 0.00 36.78 3.07
607 608 2.934364 GCTGGAGTGTGGAAGACATGAG 60.934 54.545 0.00 0.00 36.78 2.90
608 609 2.301296 CTGGAGTGTGGAAGACATGAGT 59.699 50.000 0.00 0.00 36.78 3.41
632 633 0.823356 ATGCCACGTGGTTCTGCTTT 60.823 50.000 33.92 9.69 37.57 3.51
683 684 4.335416 AGCTTTAAACTAATCCTGCAGCA 58.665 39.130 8.66 0.00 0.00 4.41
850 851 2.067365 AGGGCAAAGACGTCCTTTTT 57.933 45.000 13.01 3.50 42.13 1.94
918 919 8.950007 ATTCCTCCAAAATTTCCTACAGTTTA 57.050 30.769 0.00 0.00 0.00 2.01
1016 1017 2.236223 CTCATGGTGAGGCTGCGACT 62.236 60.000 0.00 0.00 40.71 4.18
1155 1158 7.744087 TGTTGGTAAGTTCGTAGAGTAGTAA 57.256 36.000 0.00 0.00 38.43 2.24
1156 1159 8.165239 TGTTGGTAAGTTCGTAGAGTAGTAAA 57.835 34.615 0.00 0.00 38.43 2.01
1206 1213 4.708421 AGTATCTTTGCTGCATGACCATTT 59.292 37.500 1.84 0.00 0.00 2.32
1209 1216 3.193267 TCTTTGCTGCATGACCATTTACC 59.807 43.478 1.84 0.00 0.00 2.85
1223 1230 5.801380 ACCATTTACCGTCTGTTACTGAAT 58.199 37.500 0.00 0.00 0.00 2.57
1378 1385 4.758251 CATCCGAGGCGCCACACA 62.758 66.667 31.54 12.02 0.00 3.72
1456 1511 0.608640 ACGTGGGTCTTTCCTAGCTG 59.391 55.000 0.00 0.00 36.25 4.24
1457 1512 0.895530 CGTGGGTCTTTCCTAGCTGA 59.104 55.000 0.00 0.00 36.25 4.26
1458 1513 1.482593 CGTGGGTCTTTCCTAGCTGAT 59.517 52.381 0.00 0.00 36.25 2.90
1459 1514 2.482142 CGTGGGTCTTTCCTAGCTGATC 60.482 54.545 0.00 0.00 36.25 2.92
1835 1890 7.452880 TGAAAAGTATCTCATGAACTTTGGG 57.547 36.000 19.69 0.00 41.36 4.12
1836 1891 6.434028 TGAAAAGTATCTCATGAACTTTGGGG 59.566 38.462 19.69 0.00 41.36 4.96
1837 1892 5.520748 AAGTATCTCATGAACTTTGGGGT 57.479 39.130 5.60 0.00 29.25 4.95
1838 1893 4.848357 AGTATCTCATGAACTTTGGGGTG 58.152 43.478 0.00 0.00 0.00 4.61
1839 1894 1.909700 TCTCATGAACTTTGGGGTGC 58.090 50.000 0.00 0.00 0.00 5.01
1840 1895 0.890683 CTCATGAACTTTGGGGTGCC 59.109 55.000 0.00 0.00 0.00 5.01
1841 1896 0.893270 TCATGAACTTTGGGGTGCCG 60.893 55.000 0.00 0.00 0.00 5.69
1842 1897 1.152830 ATGAACTTTGGGGTGCCGT 59.847 52.632 0.00 0.00 0.00 5.68
1843 1898 1.178534 ATGAACTTTGGGGTGCCGTG 61.179 55.000 0.00 0.00 0.00 4.94
1844 1899 1.826487 GAACTTTGGGGTGCCGTGT 60.826 57.895 0.00 0.00 0.00 4.49
1845 1900 1.380650 AACTTTGGGGTGCCGTGTT 60.381 52.632 0.00 0.00 0.00 3.32
1846 1901 0.973496 AACTTTGGGGTGCCGTGTTT 60.973 50.000 0.00 0.00 0.00 2.83
1847 1902 1.362355 CTTTGGGGTGCCGTGTTTC 59.638 57.895 0.00 0.00 0.00 2.78
1848 1903 1.076632 TTTGGGGTGCCGTGTTTCT 60.077 52.632 0.00 0.00 0.00 2.52
1849 1904 1.388065 TTTGGGGTGCCGTGTTTCTG 61.388 55.000 0.00 0.00 0.00 3.02
1850 1905 2.983592 GGGGTGCCGTGTTTCTGG 60.984 66.667 0.00 0.00 0.00 3.86
1851 1906 2.203294 GGGTGCCGTGTTTCTGGT 60.203 61.111 0.00 0.00 0.00 4.00
1852 1907 2.258726 GGGTGCCGTGTTTCTGGTC 61.259 63.158 0.00 0.00 0.00 4.02
1853 1908 2.258726 GGTGCCGTGTTTCTGGTCC 61.259 63.158 0.00 0.00 0.00 4.46
1854 1909 1.227853 GTGCCGTGTTTCTGGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
1855 1910 1.227823 TGCCGTGTTTCTGGTCCTG 60.228 57.895 0.00 0.00 0.00 3.86
1856 1911 1.070786 GCCGTGTTTCTGGTCCTGA 59.929 57.895 0.00 0.00 0.00 3.86
1857 1912 0.951040 GCCGTGTTTCTGGTCCTGAG 60.951 60.000 0.00 0.00 0.00 3.35
1858 1913 0.951040 CCGTGTTTCTGGTCCTGAGC 60.951 60.000 0.00 0.00 0.00 4.26
1859 1914 0.034059 CGTGTTTCTGGTCCTGAGCT 59.966 55.000 0.00 0.00 0.00 4.09
1860 1915 1.802069 GTGTTTCTGGTCCTGAGCTC 58.198 55.000 6.82 6.82 0.00 4.09
1861 1916 1.070758 GTGTTTCTGGTCCTGAGCTCA 59.929 52.381 17.19 17.19 0.00 4.26
1862 1917 1.980765 TGTTTCTGGTCCTGAGCTCAT 59.019 47.619 18.63 0.00 0.00 2.90
1863 1918 2.027745 TGTTTCTGGTCCTGAGCTCATC 60.028 50.000 18.63 10.69 0.00 2.92
1864 1919 2.235898 GTTTCTGGTCCTGAGCTCATCT 59.764 50.000 18.63 0.00 0.00 2.90
1865 1920 1.482954 TCTGGTCCTGAGCTCATCTG 58.517 55.000 18.63 9.23 0.00 2.90
1866 1921 0.179078 CTGGTCCTGAGCTCATCTGC 60.179 60.000 18.63 7.93 0.00 4.26
1867 1922 0.906282 TGGTCCTGAGCTCATCTGCA 60.906 55.000 18.63 3.21 34.99 4.41
1868 1923 0.461693 GGTCCTGAGCTCATCTGCAC 60.462 60.000 18.63 9.20 34.99 4.57
1869 1924 0.461693 GTCCTGAGCTCATCTGCACC 60.462 60.000 18.63 0.00 34.99 5.01
1870 1925 1.153208 CCTGAGCTCATCTGCACCC 60.153 63.158 18.63 0.00 34.99 4.61
1871 1926 1.521010 CTGAGCTCATCTGCACCCG 60.521 63.158 18.63 0.00 34.99 5.28
1872 1927 2.894387 GAGCTCATCTGCACCCGC 60.894 66.667 9.40 0.00 39.24 6.13
1873 1928 4.479993 AGCTCATCTGCACCCGCC 62.480 66.667 0.00 0.00 37.32 6.13
1875 1930 3.790437 CTCATCTGCACCCGCCCT 61.790 66.667 0.00 0.00 37.32 5.19
1876 1931 4.100084 TCATCTGCACCCGCCCTG 62.100 66.667 0.00 0.00 37.32 4.45
1877 1932 4.100084 CATCTGCACCCGCCCTGA 62.100 66.667 0.00 0.00 37.32 3.86
1878 1933 3.092511 ATCTGCACCCGCCCTGAT 61.093 61.111 0.00 0.00 37.32 2.90
1879 1934 3.411114 ATCTGCACCCGCCCTGATG 62.411 63.158 0.00 0.00 37.32 3.07
1880 1935 4.100084 CTGCACCCGCCCTGATGA 62.100 66.667 0.00 0.00 37.32 2.92
1881 1936 3.626996 CTGCACCCGCCCTGATGAA 62.627 63.158 0.00 0.00 37.32 2.57
1882 1937 2.361104 GCACCCGCCCTGATGAAA 60.361 61.111 0.00 0.00 0.00 2.69
1883 1938 1.976474 GCACCCGCCCTGATGAAAA 60.976 57.895 0.00 0.00 0.00 2.29
1884 1939 1.531739 GCACCCGCCCTGATGAAAAA 61.532 55.000 0.00 0.00 0.00 1.94
1949 2004 6.656314 TTGTGTGGTAGATAAGTTTATGCG 57.344 37.500 0.00 0.00 0.00 4.73
1950 2005 5.726397 TGTGTGGTAGATAAGTTTATGCGT 58.274 37.500 0.00 0.00 0.00 5.24
1951 2006 5.808540 TGTGTGGTAGATAAGTTTATGCGTC 59.191 40.000 0.00 0.00 0.00 5.19
1952 2007 5.808540 GTGTGGTAGATAAGTTTATGCGTCA 59.191 40.000 0.00 0.00 0.00 4.35
1953 2008 6.019801 GTGTGGTAGATAAGTTTATGCGTCAG 60.020 42.308 0.00 0.00 0.00 3.51
1954 2009 6.127563 TGTGGTAGATAAGTTTATGCGTCAGA 60.128 38.462 0.00 0.00 0.00 3.27
1955 2010 6.924060 GTGGTAGATAAGTTTATGCGTCAGAT 59.076 38.462 0.00 0.00 0.00 2.90
1956 2011 6.923508 TGGTAGATAAGTTTATGCGTCAGATG 59.076 38.462 0.00 0.00 0.00 2.90
1957 2012 5.914085 AGATAAGTTTATGCGTCAGATGC 57.086 39.130 7.77 7.77 0.00 3.91
1958 2013 4.445718 AGATAAGTTTATGCGTCAGATGCG 59.554 41.667 10.12 0.00 31.36 4.73
1965 2020 3.392431 CGTCAGATGCGCTCCAAG 58.608 61.111 9.73 0.00 0.00 3.61
1966 2021 1.446792 CGTCAGATGCGCTCCAAGT 60.447 57.895 9.73 0.00 0.00 3.16
1967 2022 1.016130 CGTCAGATGCGCTCCAAGTT 61.016 55.000 9.73 0.00 0.00 2.66
1968 2023 1.160137 GTCAGATGCGCTCCAAGTTT 58.840 50.000 9.73 0.00 0.00 2.66
1969 2024 2.346803 GTCAGATGCGCTCCAAGTTTA 58.653 47.619 9.73 0.00 0.00 2.01
1970 2025 2.742053 GTCAGATGCGCTCCAAGTTTAA 59.258 45.455 9.73 0.00 0.00 1.52
1971 2026 3.188460 GTCAGATGCGCTCCAAGTTTAAA 59.812 43.478 9.73 0.00 0.00 1.52
1972 2027 3.188460 TCAGATGCGCTCCAAGTTTAAAC 59.812 43.478 9.73 10.47 0.00 2.01
1973 2028 3.189287 CAGATGCGCTCCAAGTTTAAACT 59.811 43.478 15.22 15.22 42.04 2.66
1974 2029 3.437049 AGATGCGCTCCAAGTTTAAACTC 59.563 43.478 20.78 7.52 38.57 3.01
1975 2030 2.566913 TGCGCTCCAAGTTTAAACTCA 58.433 42.857 20.78 9.99 38.57 3.41
1976 2031 3.146066 TGCGCTCCAAGTTTAAACTCAT 58.854 40.909 20.78 4.00 38.57 2.90
1977 2032 3.568007 TGCGCTCCAAGTTTAAACTCATT 59.432 39.130 20.78 3.25 38.57 2.57
1978 2033 4.037446 TGCGCTCCAAGTTTAAACTCATTT 59.963 37.500 20.78 2.87 38.57 2.32
1979 2034 4.382754 GCGCTCCAAGTTTAAACTCATTTG 59.617 41.667 20.78 14.63 38.57 2.32
1980 2035 4.917415 CGCTCCAAGTTTAAACTCATTTGG 59.083 41.667 22.75 22.75 38.57 3.28
1981 2036 5.278266 CGCTCCAAGTTTAAACTCATTTGGA 60.278 40.000 26.67 26.67 38.57 3.53
1982 2037 5.920840 GCTCCAAGTTTAAACTCATTTGGAC 59.079 40.000 25.54 20.06 38.57 4.02
1983 2038 6.460953 GCTCCAAGTTTAAACTCATTTGGACA 60.461 38.462 25.54 13.38 38.57 4.02
1984 2039 7.595819 TCCAAGTTTAAACTCATTTGGACAT 57.404 32.000 25.54 5.89 38.57 3.06
1985 2040 7.657336 TCCAAGTTTAAACTCATTTGGACATC 58.343 34.615 25.54 0.00 38.57 3.06
1986 2041 7.505585 TCCAAGTTTAAACTCATTTGGACATCT 59.494 33.333 25.54 5.29 38.57 2.90
1987 2042 7.596248 CCAAGTTTAAACTCATTTGGACATCTG 59.404 37.037 23.77 13.31 38.57 2.90
1988 2043 8.352201 CAAGTTTAAACTCATTTGGACATCTGA 58.648 33.333 20.78 0.00 38.57 3.27
1989 2044 8.103948 AGTTTAAACTCATTTGGACATCTGAG 57.896 34.615 15.22 9.00 40.71 3.35
1990 2045 6.500684 TTAAACTCATTTGGACATCTGAGC 57.499 37.500 10.00 0.00 38.94 4.26
1991 2046 3.708403 ACTCATTTGGACATCTGAGCA 57.292 42.857 10.00 0.00 38.94 4.26
1992 2047 4.025040 ACTCATTTGGACATCTGAGCAA 57.975 40.909 10.00 0.00 38.94 3.91
1993 2048 3.755378 ACTCATTTGGACATCTGAGCAAC 59.245 43.478 10.00 0.00 38.94 4.17
1994 2049 4.008330 CTCATTTGGACATCTGAGCAACT 58.992 43.478 0.00 0.00 0.00 3.16
1995 2050 4.005650 TCATTTGGACATCTGAGCAACTC 58.994 43.478 0.00 0.00 0.00 3.01
1996 2051 3.777106 TTTGGACATCTGAGCAACTCT 57.223 42.857 0.00 0.00 0.00 3.24
1997 2052 3.325293 TTGGACATCTGAGCAACTCTC 57.675 47.619 0.00 0.00 42.23 3.20
2005 2060 2.330440 TGAGCAACTCTCAGCAACAA 57.670 45.000 0.00 0.00 46.34 2.83
2006 2061 2.642427 TGAGCAACTCTCAGCAACAAA 58.358 42.857 0.00 0.00 46.34 2.83
2007 2062 3.216800 TGAGCAACTCTCAGCAACAAAT 58.783 40.909 0.00 0.00 46.34 2.32
2008 2063 3.633525 TGAGCAACTCTCAGCAACAAATT 59.366 39.130 0.00 0.00 46.34 1.82
2009 2064 4.225208 GAGCAACTCTCAGCAACAAATTC 58.775 43.478 0.00 0.00 41.51 2.17
2010 2065 3.633525 AGCAACTCTCAGCAACAAATTCA 59.366 39.130 0.00 0.00 0.00 2.57
2011 2066 4.098349 AGCAACTCTCAGCAACAAATTCAA 59.902 37.500 0.00 0.00 0.00 2.69
2012 2067 4.207841 GCAACTCTCAGCAACAAATTCAAC 59.792 41.667 0.00 0.00 0.00 3.18
2013 2068 4.214980 ACTCTCAGCAACAAATTCAACG 57.785 40.909 0.00 0.00 0.00 4.10
2014 2069 3.627577 ACTCTCAGCAACAAATTCAACGT 59.372 39.130 0.00 0.00 0.00 3.99
2015 2070 4.096382 ACTCTCAGCAACAAATTCAACGTT 59.904 37.500 0.00 0.00 0.00 3.99
2016 2071 4.992688 TCTCAGCAACAAATTCAACGTTT 58.007 34.783 0.00 0.00 0.00 3.60
2017 2072 4.797868 TCTCAGCAACAAATTCAACGTTTG 59.202 37.500 0.00 0.00 41.22 2.93
2019 2074 5.641709 TCAGCAACAAATTCAACGTTTGTA 58.358 33.333 0.00 0.00 46.01 2.41
2020 2075 6.093404 TCAGCAACAAATTCAACGTTTGTAA 58.907 32.000 0.00 0.00 46.01 2.41
2021 2076 6.586463 TCAGCAACAAATTCAACGTTTGTAAA 59.414 30.769 0.00 0.00 46.01 2.01
2022 2077 7.116376 TCAGCAACAAATTCAACGTTTGTAAAA 59.884 29.630 0.00 0.00 46.01 1.52
2023 2078 7.742089 CAGCAACAAATTCAACGTTTGTAAAAA 59.258 29.630 0.00 0.00 46.01 1.94
2044 2099 6.569179 AAAAGTTTACTGTTCACACACTGT 57.431 33.333 0.00 0.00 33.75 3.55
2045 2100 6.569179 AAAGTTTACTGTTCACACACTGTT 57.431 33.333 0.00 0.00 31.81 3.16
2046 2101 5.796350 AGTTTACTGTTCACACACTGTTC 57.204 39.130 0.00 0.00 31.81 3.18
2047 2102 5.488341 AGTTTACTGTTCACACACTGTTCT 58.512 37.500 0.00 0.00 31.81 3.01
2048 2103 5.351465 AGTTTACTGTTCACACACTGTTCTG 59.649 40.000 0.00 0.00 31.81 3.02
2049 2104 3.610040 ACTGTTCACACACTGTTCTGA 57.390 42.857 0.00 0.00 0.00 3.27
2050 2105 3.262420 ACTGTTCACACACTGTTCTGAC 58.738 45.455 0.00 0.00 0.00 3.51
2051 2106 2.609459 CTGTTCACACACTGTTCTGACC 59.391 50.000 0.00 0.00 0.00 4.02
2052 2107 1.940613 GTTCACACACTGTTCTGACCC 59.059 52.381 0.00 0.00 0.00 4.46
2053 2108 0.104120 TCACACACTGTTCTGACCCG 59.896 55.000 0.00 0.00 0.00 5.28
2054 2109 0.104120 CACACACTGTTCTGACCCGA 59.896 55.000 0.00 0.00 0.00 5.14
2055 2110 1.048601 ACACACTGTTCTGACCCGAT 58.951 50.000 0.00 0.00 0.00 4.18
2056 2111 1.416401 ACACACTGTTCTGACCCGATT 59.584 47.619 0.00 0.00 0.00 3.34
2057 2112 2.158813 ACACACTGTTCTGACCCGATTT 60.159 45.455 0.00 0.00 0.00 2.17
2058 2113 2.224079 CACACTGTTCTGACCCGATTTG 59.776 50.000 0.00 0.00 0.00 2.32
2059 2114 2.158813 ACACTGTTCTGACCCGATTTGT 60.159 45.455 0.00 0.00 0.00 2.83
2060 2115 2.878406 CACTGTTCTGACCCGATTTGTT 59.122 45.455 0.00 0.00 0.00 2.83
2061 2116 3.315191 CACTGTTCTGACCCGATTTGTTT 59.685 43.478 0.00 0.00 0.00 2.83
2062 2117 3.951680 ACTGTTCTGACCCGATTTGTTTT 59.048 39.130 0.00 0.00 0.00 2.43
2063 2118 4.401202 ACTGTTCTGACCCGATTTGTTTTT 59.599 37.500 0.00 0.00 0.00 1.94
2095 2150 3.815856 GAGATCTGCTCAGATGTCCAA 57.184 47.619 20.19 0.00 46.55 3.53
2096 2151 4.134379 GAGATCTGCTCAGATGTCCAAA 57.866 45.455 20.19 0.00 46.55 3.28
2097 2152 4.706035 GAGATCTGCTCAGATGTCCAAAT 58.294 43.478 20.19 0.00 46.55 2.32
2098 2153 5.851720 GAGATCTGCTCAGATGTCCAAATA 58.148 41.667 20.19 0.00 46.55 1.40
2099 2154 6.286758 GAGATCTGCTCAGATGTCCAAATAA 58.713 40.000 20.19 0.00 46.55 1.40
2100 2155 6.424509 GAGATCTGCTCAGATGTCCAAATAAG 59.575 42.308 20.19 0.00 46.55 1.73
2101 2156 5.426689 TCTGCTCAGATGTCCAAATAAGT 57.573 39.130 0.00 0.00 31.41 2.24
2102 2157 5.809001 TCTGCTCAGATGTCCAAATAAGTT 58.191 37.500 0.00 0.00 31.41 2.66
2103 2158 5.645067 TCTGCTCAGATGTCCAAATAAGTTG 59.355 40.000 0.00 0.00 32.86 3.16
2104 2159 5.559770 TGCTCAGATGTCCAAATAAGTTGA 58.440 37.500 0.00 0.00 39.87 3.18
2105 2160 6.003326 TGCTCAGATGTCCAAATAAGTTGAA 58.997 36.000 0.00 0.00 39.87 2.69
2106 2161 6.489700 TGCTCAGATGTCCAAATAAGTTGAAA 59.510 34.615 0.00 0.00 39.87 2.69
2107 2162 7.177216 TGCTCAGATGTCCAAATAAGTTGAAAT 59.823 33.333 0.00 0.00 39.87 2.17
2108 2163 8.031277 GCTCAGATGTCCAAATAAGTTGAAATT 58.969 33.333 0.00 0.00 39.87 1.82
2109 2164 9.918630 CTCAGATGTCCAAATAAGTTGAAATTT 57.081 29.630 0.00 0.00 39.87 1.82
2110 2165 9.695526 TCAGATGTCCAAATAAGTTGAAATTTG 57.304 29.630 0.00 3.53 39.87 2.32
2117 2172 7.636259 CAAATAAGTTGAAATTTGGAGCGAA 57.364 32.000 0.00 0.00 39.87 4.70
2118 2173 7.501515 CAAATAAGTTGAAATTTGGAGCGAAC 58.498 34.615 0.00 0.00 39.87 3.95
2119 2174 3.643159 AGTTGAAATTTGGAGCGAACC 57.357 42.857 0.00 0.00 0.00 3.62
2120 2175 3.222603 AGTTGAAATTTGGAGCGAACCT 58.777 40.909 0.00 0.00 0.00 3.50
2121 2176 3.253432 AGTTGAAATTTGGAGCGAACCTC 59.747 43.478 0.00 0.00 39.98 3.85
2122 2177 2.857483 TGAAATTTGGAGCGAACCTCA 58.143 42.857 0.00 0.00 42.62 3.86
2123 2178 2.552315 TGAAATTTGGAGCGAACCTCAC 59.448 45.455 0.00 0.00 42.62 3.51
2124 2179 1.156736 AATTTGGAGCGAACCTCACG 58.843 50.000 0.00 0.00 42.62 4.35
2134 2189 3.103793 CGAACCTCACGCATAAACTTG 57.896 47.619 0.00 0.00 0.00 3.16
2135 2190 2.478894 CGAACCTCACGCATAAACTTGT 59.521 45.455 0.00 0.00 0.00 3.16
2136 2191 3.423123 CGAACCTCACGCATAAACTTGTC 60.423 47.826 0.00 0.00 0.00 3.18
2137 2192 3.402628 ACCTCACGCATAAACTTGTCT 57.597 42.857 0.00 0.00 0.00 3.41
2138 2193 3.067106 ACCTCACGCATAAACTTGTCTG 58.933 45.455 0.00 0.00 0.00 3.51
2139 2194 3.067106 CCTCACGCATAAACTTGTCTGT 58.933 45.455 0.00 0.00 0.00 3.41
2140 2195 3.123621 CCTCACGCATAAACTTGTCTGTC 59.876 47.826 0.00 0.00 0.00 3.51
2141 2196 3.723260 TCACGCATAAACTTGTCTGTCA 58.277 40.909 0.00 0.00 0.00 3.58
2142 2197 3.493129 TCACGCATAAACTTGTCTGTCAC 59.507 43.478 0.00 0.00 0.00 3.67
2143 2198 3.247411 CACGCATAAACTTGTCTGTCACA 59.753 43.478 0.00 0.00 0.00 3.58
2144 2199 3.247648 ACGCATAAACTTGTCTGTCACAC 59.752 43.478 0.00 0.00 33.41 3.82
2145 2200 3.247411 CGCATAAACTTGTCTGTCACACA 59.753 43.478 0.00 0.00 33.41 3.72
2146 2201 4.260579 CGCATAAACTTGTCTGTCACACAA 60.261 41.667 0.00 0.00 33.41 3.33
2147 2202 5.577835 GCATAAACTTGTCTGTCACACAAA 58.422 37.500 0.00 0.00 33.41 2.83
2148 2203 6.033341 GCATAAACTTGTCTGTCACACAAAA 58.967 36.000 0.00 0.00 33.41 2.44
2149 2204 6.197096 GCATAAACTTGTCTGTCACACAAAAG 59.803 38.462 0.00 0.00 33.41 2.27
2150 2205 5.957842 AAACTTGTCTGTCACACAAAAGA 57.042 34.783 0.00 0.00 33.41 2.52
2151 2206 5.957842 AACTTGTCTGTCACACAAAAGAA 57.042 34.783 0.00 0.00 33.41 2.52
2152 2207 5.957842 ACTTGTCTGTCACACAAAAGAAA 57.042 34.783 0.00 0.00 33.41 2.52
2153 2208 6.515272 ACTTGTCTGTCACACAAAAGAAAT 57.485 33.333 0.00 0.00 33.41 2.17
2154 2209 6.924111 ACTTGTCTGTCACACAAAAGAAATT 58.076 32.000 0.00 0.00 33.41 1.82
2155 2210 6.808212 ACTTGTCTGTCACACAAAAGAAATTG 59.192 34.615 0.00 0.00 33.41 2.32
2156 2211 5.649557 TGTCTGTCACACAAAAGAAATTGG 58.350 37.500 0.00 0.00 34.56 3.16
2157 2212 5.417266 TGTCTGTCACACAAAAGAAATTGGA 59.583 36.000 0.00 0.00 34.56 3.53
2158 2213 6.096705 TGTCTGTCACACAAAAGAAATTGGAT 59.903 34.615 0.00 0.00 34.56 3.41
2159 2214 7.284261 TGTCTGTCACACAAAAGAAATTGGATA 59.716 33.333 0.00 0.00 34.56 2.59
2160 2215 8.299570 GTCTGTCACACAAAAGAAATTGGATAT 58.700 33.333 0.00 0.00 34.56 1.63
2161 2216 8.859090 TCTGTCACACAAAAGAAATTGGATATT 58.141 29.630 0.00 0.00 34.56 1.28
2162 2217 9.480053 CTGTCACACAAAAGAAATTGGATATTT 57.520 29.630 0.00 0.00 34.56 1.40
2163 2218 9.829507 TGTCACACAAAAGAAATTGGATATTTT 57.170 25.926 0.00 0.00 34.56 1.82
2212 2267 2.655090 TTTTGACTGGGTGCAGATGA 57.345 45.000 0.00 0.00 0.00 2.92
2213 2268 2.189594 TTTGACTGGGTGCAGATGAG 57.810 50.000 0.00 0.00 0.00 2.90
2214 2269 0.321919 TTGACTGGGTGCAGATGAGC 60.322 55.000 0.00 0.00 0.00 4.26
2215 2270 1.451028 GACTGGGTGCAGATGAGCC 60.451 63.158 0.00 0.00 0.00 4.70
2216 2271 1.908340 GACTGGGTGCAGATGAGCCT 61.908 60.000 0.00 0.00 31.85 4.58
2217 2272 0.618680 ACTGGGTGCAGATGAGCCTA 60.619 55.000 0.00 0.00 31.85 3.93
2218 2273 0.106335 CTGGGTGCAGATGAGCCTAG 59.894 60.000 0.00 0.00 31.85 3.02
2219 2274 1.340399 TGGGTGCAGATGAGCCTAGG 61.340 60.000 3.67 3.67 31.85 3.02
2220 2275 1.227793 GGTGCAGATGAGCCTAGGC 60.228 63.158 27.19 27.19 42.33 3.93
2221 2276 1.524002 GTGCAGATGAGCCTAGGCA 59.476 57.895 34.70 16.70 44.88 4.75
2222 2277 0.813210 GTGCAGATGAGCCTAGGCAC 60.813 60.000 34.70 28.76 43.78 5.01
2223 2278 1.227793 GCAGATGAGCCTAGGCACC 60.228 63.158 34.70 24.85 44.88 5.01
2224 2279 1.068753 CAGATGAGCCTAGGCACCG 59.931 63.158 34.70 13.58 44.88 4.94
2225 2280 1.075970 AGATGAGCCTAGGCACCGA 60.076 57.895 34.70 14.85 44.88 4.69
2226 2281 0.687757 AGATGAGCCTAGGCACCGAA 60.688 55.000 34.70 14.09 44.88 4.30
2227 2282 0.394565 GATGAGCCTAGGCACCGAAT 59.605 55.000 34.70 18.23 44.88 3.34
2228 2283 0.839946 ATGAGCCTAGGCACCGAATT 59.160 50.000 34.70 13.13 44.88 2.17
2229 2284 0.107703 TGAGCCTAGGCACCGAATTG 60.108 55.000 34.70 0.00 44.88 2.32
2230 2285 0.815615 GAGCCTAGGCACCGAATTGG 60.816 60.000 34.70 0.00 44.88 3.16
2231 2286 1.823899 GCCTAGGCACCGAATTGGG 60.824 63.158 29.33 4.73 44.64 4.12
2232 2287 1.607612 CCTAGGCACCGAATTGGGT 59.392 57.895 6.28 6.28 44.64 4.51
2233 2288 0.034477 CCTAGGCACCGAATTGGGTT 60.034 55.000 9.76 0.00 44.64 4.11
2234 2289 1.615919 CCTAGGCACCGAATTGGGTTT 60.616 52.381 9.76 1.68 44.64 3.27
2256 2311 7.384932 GGTTTTCACTTTGCTAATTGCTATGTT 59.615 33.333 0.00 0.00 43.37 2.71
2259 2314 5.863397 TCACTTTGCTAATTGCTATGTTTGC 59.137 36.000 0.00 0.00 43.37 3.68
2260 2315 5.634439 CACTTTGCTAATTGCTATGTTTGCA 59.366 36.000 0.00 0.00 43.37 4.08
2353 2411 5.529800 TGATAATCTCATGGCATGTCACTTG 59.470 40.000 25.62 0.00 0.00 3.16
2365 2423 0.034896 GTCACTTGTCGACCCACCAT 59.965 55.000 14.12 0.00 0.00 3.55
2378 2436 1.600636 CACCATCGGCACAACCACT 60.601 57.895 0.00 0.00 39.03 4.00
2389 2447 2.030562 AACCACTTCTGGCGGTCG 59.969 61.111 0.00 0.00 42.08 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.476891 CAGTGGCTTAGAAGAGCGGTA 59.523 52.381 0.00 0.00 43.62 4.02
60 61 2.435069 GGAAACTAGAGCTCTAACCCCC 59.565 54.545 23.37 17.39 0.00 5.40
97 98 3.394674 TGCAAACTACGTCATCCTCAA 57.605 42.857 0.00 0.00 0.00 3.02
131 132 3.252458 ACGGAAGACAGGCAACATTAAAC 59.748 43.478 0.00 0.00 41.41 2.01
144 145 2.690653 CTTGGGGGCAACGGAAGACA 62.691 60.000 0.00 0.00 37.60 3.41
152 153 0.251165 TCTACAAGCTTGGGGGCAAC 60.251 55.000 29.18 0.00 34.17 4.17
180 181 0.391661 ATGCACTGCTTAGGGACACG 60.392 55.000 1.98 0.00 0.00 4.49
185 186 1.602311 GATGGATGCACTGCTTAGGG 58.398 55.000 1.98 0.00 0.00 3.53
348 349 4.899457 TCCACCAACATCTCGGATAATACT 59.101 41.667 0.00 0.00 0.00 2.12
351 352 3.967326 TCTCCACCAACATCTCGGATAAT 59.033 43.478 0.00 0.00 0.00 1.28
353 354 2.959030 CTCTCCACCAACATCTCGGATA 59.041 50.000 0.00 0.00 0.00 2.59
423 424 2.986842 CGAAGATTGATCGTGTGCTC 57.013 50.000 0.00 0.00 35.64 4.26
500 501 4.206375 TGACAACAATGAGCTCAAGGAAA 58.794 39.130 22.50 0.00 0.00 3.13
542 543 5.529060 AGATTCAAGGAGTTTGTTGACTCAC 59.471 40.000 7.27 0.00 46.21 3.51
543 544 5.684704 AGATTCAAGGAGTTTGTTGACTCA 58.315 37.500 7.27 0.00 46.21 3.41
544 545 5.180304 GGAGATTCAAGGAGTTTGTTGACTC 59.820 44.000 0.00 0.00 44.20 3.36
545 546 5.066593 GGAGATTCAAGGAGTTTGTTGACT 58.933 41.667 0.00 0.00 38.01 3.41
546 547 4.821805 TGGAGATTCAAGGAGTTTGTTGAC 59.178 41.667 0.00 0.00 38.01 3.18
547 548 5.047566 TGGAGATTCAAGGAGTTTGTTGA 57.952 39.130 0.00 0.00 38.01 3.18
548 549 5.300286 ACTTGGAGATTCAAGGAGTTTGTTG 59.700 40.000 5.86 0.00 46.04 3.33
549 550 5.449553 ACTTGGAGATTCAAGGAGTTTGTT 58.550 37.500 5.86 0.00 46.04 2.83
550 551 5.053978 ACTTGGAGATTCAAGGAGTTTGT 57.946 39.130 5.86 0.00 46.04 2.83
551 552 5.065914 TGACTTGGAGATTCAAGGAGTTTG 58.934 41.667 5.86 0.00 46.04 2.93
552 553 5.072329 TCTGACTTGGAGATTCAAGGAGTTT 59.928 40.000 5.86 0.00 46.04 2.66
553 554 4.594920 TCTGACTTGGAGATTCAAGGAGTT 59.405 41.667 5.86 0.00 46.04 3.01
554 555 4.163427 TCTGACTTGGAGATTCAAGGAGT 58.837 43.478 5.86 0.00 46.04 3.85
555 556 4.222588 ACTCTGACTTGGAGATTCAAGGAG 59.777 45.833 5.86 5.27 46.04 3.69
556 557 4.163427 ACTCTGACTTGGAGATTCAAGGA 58.837 43.478 5.86 0.00 46.04 3.36
557 558 4.020751 TGACTCTGACTTGGAGATTCAAGG 60.021 45.833 5.86 0.00 46.04 3.61
558 559 4.928615 GTGACTCTGACTTGGAGATTCAAG 59.071 45.833 0.00 0.00 46.86 3.02
559 560 4.262635 GGTGACTCTGACTTGGAGATTCAA 60.263 45.833 0.00 0.00 32.69 2.69
560 561 3.259374 GGTGACTCTGACTTGGAGATTCA 59.741 47.826 0.00 0.00 35.10 2.57
561 562 3.368948 GGGTGACTCTGACTTGGAGATTC 60.369 52.174 0.00 0.00 35.10 2.52
562 563 2.569404 GGGTGACTCTGACTTGGAGATT 59.431 50.000 0.00 0.00 35.10 2.40
563 564 2.183679 GGGTGACTCTGACTTGGAGAT 58.816 52.381 0.00 0.00 35.10 2.75
564 565 1.148027 AGGGTGACTCTGACTTGGAGA 59.852 52.381 0.00 0.00 35.10 3.71
565 566 1.548269 GAGGGTGACTCTGACTTGGAG 59.452 57.143 0.00 0.00 43.14 3.86
566 567 1.633774 GAGGGTGACTCTGACTTGGA 58.366 55.000 0.00 0.00 43.14 3.53
567 568 0.244994 CGAGGGTGACTCTGACTTGG 59.755 60.000 0.00 0.00 44.33 3.61
568 569 0.389166 GCGAGGGTGACTCTGACTTG 60.389 60.000 0.00 0.00 44.33 3.16
569 570 0.540830 AGCGAGGGTGACTCTGACTT 60.541 55.000 0.00 0.00 44.33 3.01
570 571 1.075836 AGCGAGGGTGACTCTGACT 59.924 57.895 0.00 0.00 44.33 3.41
571 572 1.214062 CAGCGAGGGTGACTCTGAC 59.786 63.158 0.00 0.00 44.33 3.51
572 573 1.979155 CCAGCGAGGGTGACTCTGA 60.979 63.158 0.00 0.00 44.33 3.27
573 574 1.943116 CTCCAGCGAGGGTGACTCTG 61.943 65.000 0.00 0.00 44.33 3.35
574 575 1.680651 CTCCAGCGAGGGTGACTCT 60.681 63.158 0.00 0.00 44.33 3.24
575 576 1.979693 ACTCCAGCGAGGGTGACTC 60.980 63.158 0.00 0.00 40.77 3.36
576 577 2.118513 ACTCCAGCGAGGGTGACT 59.881 61.111 0.00 0.00 40.77 3.41
577 578 2.262915 CACTCCAGCGAGGGTGAC 59.737 66.667 3.13 0.00 40.77 3.67
581 582 2.513026 CTTCCACACTCCAGCGAGGG 62.513 65.000 0.00 0.00 45.87 4.30
582 583 1.079543 CTTCCACACTCCAGCGAGG 60.080 63.158 0.00 0.00 40.77 4.63
583 584 0.389166 GTCTTCCACACTCCAGCGAG 60.389 60.000 0.00 0.00 42.32 5.03
584 585 1.112916 TGTCTTCCACACTCCAGCGA 61.113 55.000 0.00 0.00 0.00 4.93
585 586 0.036952 ATGTCTTCCACACTCCAGCG 60.037 55.000 0.00 0.00 38.04 5.18
586 587 1.002430 TCATGTCTTCCACACTCCAGC 59.998 52.381 0.00 0.00 38.04 4.85
587 588 2.301296 ACTCATGTCTTCCACACTCCAG 59.699 50.000 0.00 0.00 38.04 3.86
588 589 2.329267 ACTCATGTCTTCCACACTCCA 58.671 47.619 0.00 0.00 38.04 3.86
589 590 3.409026 AACTCATGTCTTCCACACTCC 57.591 47.619 0.00 0.00 38.04 3.85
590 591 6.861065 TTTAAACTCATGTCTTCCACACTC 57.139 37.500 0.00 0.00 38.04 3.51
591 592 6.294176 GCATTTAAACTCATGTCTTCCACACT 60.294 38.462 0.00 0.00 38.04 3.55
592 593 5.858581 GCATTTAAACTCATGTCTTCCACAC 59.141 40.000 0.00 0.00 38.04 3.82
593 594 5.048083 GGCATTTAAACTCATGTCTTCCACA 60.048 40.000 0.00 0.00 40.18 4.17
594 595 5.048083 TGGCATTTAAACTCATGTCTTCCAC 60.048 40.000 0.00 0.00 0.00 4.02
595 596 5.048083 GTGGCATTTAAACTCATGTCTTCCA 60.048 40.000 0.00 0.00 0.00 3.53
596 597 5.402398 GTGGCATTTAAACTCATGTCTTCC 58.598 41.667 0.00 0.00 0.00 3.46
597 598 5.088739 CGTGGCATTTAAACTCATGTCTTC 58.911 41.667 0.00 0.00 0.00 2.87
598 599 4.518970 ACGTGGCATTTAAACTCATGTCTT 59.481 37.500 0.00 0.00 0.00 3.01
599 600 4.072131 ACGTGGCATTTAAACTCATGTCT 58.928 39.130 0.00 0.00 0.00 3.41
600 601 4.158384 CACGTGGCATTTAAACTCATGTC 58.842 43.478 7.95 0.00 0.00 3.06
601 602 3.057596 CCACGTGGCATTTAAACTCATGT 60.058 43.478 24.02 0.00 0.00 3.21
602 603 3.057596 ACCACGTGGCATTTAAACTCATG 60.058 43.478 34.26 5.11 39.32 3.07
603 604 3.153919 ACCACGTGGCATTTAAACTCAT 58.846 40.909 34.26 7.12 39.32 2.90
604 605 2.577700 ACCACGTGGCATTTAAACTCA 58.422 42.857 34.26 0.00 39.32 3.41
605 606 3.252458 AGAACCACGTGGCATTTAAACTC 59.748 43.478 34.26 15.35 39.32 3.01
606 607 3.004315 CAGAACCACGTGGCATTTAAACT 59.996 43.478 34.26 17.24 39.32 2.66
607 608 3.305110 CAGAACCACGTGGCATTTAAAC 58.695 45.455 34.26 15.41 39.32 2.01
608 609 2.287909 GCAGAACCACGTGGCATTTAAA 60.288 45.455 34.26 0.00 39.32 1.52
664 665 4.078537 TGCTGCTGCAGGATTAGTTTAAA 58.921 39.130 29.05 0.00 45.31 1.52
683 684 2.286523 CCTTCTGGGTCCGAGTGCT 61.287 63.158 0.26 0.00 0.00 4.40
689 690 1.893786 CACTCTCCTTCTGGGTCCG 59.106 63.158 0.00 0.00 36.25 4.79
850 851 3.118186 TCCTCTGTCCCGTCAAAAAGAAA 60.118 43.478 0.00 0.00 0.00 2.52
918 919 1.265095 CAATGCGCAGAGTTGACAGTT 59.735 47.619 18.32 0.00 0.00 3.16
1016 1017 0.037512 GCTCTGTGCTCTGCTCTCAA 60.038 55.000 0.00 0.00 38.95 3.02
1131 1133 7.744087 TTACTACTCTACGAACTTACCAACA 57.256 36.000 0.00 0.00 0.00 3.33
1155 1158 5.621193 ACTACTCAAGGTAACAGCAATGTT 58.379 37.500 0.00 0.00 41.41 2.71
1156 1159 5.228945 ACTACTCAAGGTAACAGCAATGT 57.771 39.130 0.00 0.00 41.41 2.71
1318 1325 1.680735 CACCTCATCCTCTTCCTCTCG 59.319 57.143 0.00 0.00 0.00 4.04
1456 1511 5.619220 ACCAAATTGAGATGAGCTAGGATC 58.381 41.667 0.00 0.00 0.00 3.36
1457 1512 5.455899 GGACCAAATTGAGATGAGCTAGGAT 60.456 44.000 0.00 0.00 0.00 3.24
1458 1513 4.141620 GGACCAAATTGAGATGAGCTAGGA 60.142 45.833 0.00 0.00 0.00 2.94
1459 1514 4.133078 GGACCAAATTGAGATGAGCTAGG 58.867 47.826 0.00 0.00 0.00 3.02
1817 1872 3.378427 GCACCCCAAAGTTCATGAGATAC 59.622 47.826 0.00 0.00 0.00 2.24
1820 1875 1.547675 GGCACCCCAAAGTTCATGAGA 60.548 52.381 0.00 0.00 0.00 3.27
1821 1876 0.890683 GGCACCCCAAAGTTCATGAG 59.109 55.000 0.00 0.00 0.00 2.90
1822 1877 0.893270 CGGCACCCCAAAGTTCATGA 60.893 55.000 0.00 0.00 0.00 3.07
1823 1878 1.178534 ACGGCACCCCAAAGTTCATG 61.179 55.000 0.00 0.00 0.00 3.07
1824 1879 1.152830 ACGGCACCCCAAAGTTCAT 59.847 52.632 0.00 0.00 0.00 2.57
1825 1880 1.826054 CACGGCACCCCAAAGTTCA 60.826 57.895 0.00 0.00 0.00 3.18
1826 1881 1.388837 AACACGGCACCCCAAAGTTC 61.389 55.000 0.00 0.00 0.00 3.01
1827 1882 0.973496 AAACACGGCACCCCAAAGTT 60.973 50.000 0.00 0.00 0.00 2.66
1828 1883 1.380650 AAACACGGCACCCCAAAGT 60.381 52.632 0.00 0.00 0.00 2.66
1829 1884 1.106944 AGAAACACGGCACCCCAAAG 61.107 55.000 0.00 0.00 0.00 2.77
1830 1885 1.076632 AGAAACACGGCACCCCAAA 60.077 52.632 0.00 0.00 0.00 3.28
1831 1886 1.826054 CAGAAACACGGCACCCCAA 60.826 57.895 0.00 0.00 0.00 4.12
1832 1887 2.203280 CAGAAACACGGCACCCCA 60.203 61.111 0.00 0.00 0.00 4.96
1833 1888 2.983592 CCAGAAACACGGCACCCC 60.984 66.667 0.00 0.00 0.00 4.95
1834 1889 2.203294 ACCAGAAACACGGCACCC 60.203 61.111 0.00 0.00 0.00 4.61
1835 1890 2.258726 GGACCAGAAACACGGCACC 61.259 63.158 0.00 0.00 0.00 5.01
1836 1891 1.227853 AGGACCAGAAACACGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
1837 1892 1.227823 CAGGACCAGAAACACGGCA 60.228 57.895 0.00 0.00 0.00 5.69
1838 1893 0.951040 CTCAGGACCAGAAACACGGC 60.951 60.000 0.00 0.00 0.00 5.68
1839 1894 0.951040 GCTCAGGACCAGAAACACGG 60.951 60.000 0.00 0.00 0.00 4.94
1840 1895 0.034059 AGCTCAGGACCAGAAACACG 59.966 55.000 0.00 0.00 0.00 4.49
1841 1896 1.070758 TGAGCTCAGGACCAGAAACAC 59.929 52.381 13.74 0.00 0.00 3.32
1842 1897 1.423584 TGAGCTCAGGACCAGAAACA 58.576 50.000 13.74 0.00 0.00 2.83
1843 1898 2.235898 AGATGAGCTCAGGACCAGAAAC 59.764 50.000 22.96 3.45 0.00 2.78
1844 1899 2.235650 CAGATGAGCTCAGGACCAGAAA 59.764 50.000 22.96 0.00 0.00 2.52
1845 1900 1.829849 CAGATGAGCTCAGGACCAGAA 59.170 52.381 22.96 0.00 0.00 3.02
1846 1901 1.482954 CAGATGAGCTCAGGACCAGA 58.517 55.000 22.96 0.00 0.00 3.86
1847 1902 0.179078 GCAGATGAGCTCAGGACCAG 60.179 60.000 22.96 9.42 0.00 4.00
1848 1903 0.906282 TGCAGATGAGCTCAGGACCA 60.906 55.000 22.96 13.35 34.99 4.02
1849 1904 0.461693 GTGCAGATGAGCTCAGGACC 60.462 60.000 22.96 10.93 34.99 4.46
1850 1905 0.461693 GGTGCAGATGAGCTCAGGAC 60.462 60.000 22.96 18.49 31.99 3.85
1851 1906 1.620739 GGGTGCAGATGAGCTCAGGA 61.621 60.000 22.96 7.08 34.99 3.86
1852 1907 1.153208 GGGTGCAGATGAGCTCAGG 60.153 63.158 22.96 14.68 34.99 3.86
1853 1908 1.521010 CGGGTGCAGATGAGCTCAG 60.521 63.158 22.96 9.85 34.99 3.35
1854 1909 2.580815 CGGGTGCAGATGAGCTCA 59.419 61.111 20.79 20.79 34.99 4.26
1855 1910 2.894387 GCGGGTGCAGATGAGCTC 60.894 66.667 6.82 6.82 42.15 4.09
1856 1911 4.479993 GGCGGGTGCAGATGAGCT 62.480 66.667 0.00 0.00 45.35 4.09
1858 1913 3.790437 AGGGCGGGTGCAGATGAG 61.790 66.667 0.00 0.00 45.35 2.90
1859 1914 4.100084 CAGGGCGGGTGCAGATGA 62.100 66.667 0.00 0.00 45.35 2.92
1860 1915 3.411114 ATCAGGGCGGGTGCAGATG 62.411 63.158 0.00 0.00 45.35 2.90
1861 1916 3.092511 ATCAGGGCGGGTGCAGAT 61.093 61.111 0.00 0.00 45.35 2.90
1862 1917 4.100084 CATCAGGGCGGGTGCAGA 62.100 66.667 0.00 0.00 45.35 4.26
1863 1918 3.626996 TTCATCAGGGCGGGTGCAG 62.627 63.158 0.00 0.00 45.35 4.41
1864 1919 2.705312 TTTTCATCAGGGCGGGTGCA 62.705 55.000 0.00 0.00 45.35 4.57
1865 1920 1.531739 TTTTTCATCAGGGCGGGTGC 61.532 55.000 0.00 0.00 41.71 5.01
1866 1921 2.652313 TTTTTCATCAGGGCGGGTG 58.348 52.632 0.00 0.00 0.00 4.61
1923 1978 8.018520 CGCATAAACTTATCTACCACACAAAAA 58.981 33.333 0.00 0.00 0.00 1.94
1924 1979 7.173562 ACGCATAAACTTATCTACCACACAAAA 59.826 33.333 0.00 0.00 0.00 2.44
1925 1980 6.651643 ACGCATAAACTTATCTACCACACAAA 59.348 34.615 0.00 0.00 0.00 2.83
1926 1981 6.167685 ACGCATAAACTTATCTACCACACAA 58.832 36.000 0.00 0.00 0.00 3.33
1927 1982 5.726397 ACGCATAAACTTATCTACCACACA 58.274 37.500 0.00 0.00 0.00 3.72
1928 1983 5.808540 TGACGCATAAACTTATCTACCACAC 59.191 40.000 0.00 0.00 0.00 3.82
1929 1984 5.968254 TGACGCATAAACTTATCTACCACA 58.032 37.500 0.00 0.00 0.00 4.17
1930 1985 6.270815 TCTGACGCATAAACTTATCTACCAC 58.729 40.000 0.00 0.00 0.00 4.16
1931 1986 6.459670 TCTGACGCATAAACTTATCTACCA 57.540 37.500 0.00 0.00 0.00 3.25
1932 1987 6.128795 GCATCTGACGCATAAACTTATCTACC 60.129 42.308 0.00 0.00 0.00 3.18
1933 1988 6.399039 CGCATCTGACGCATAAACTTATCTAC 60.399 42.308 0.00 0.00 0.00 2.59
1934 1989 5.629435 CGCATCTGACGCATAAACTTATCTA 59.371 40.000 0.00 0.00 0.00 1.98
1935 1990 4.445718 CGCATCTGACGCATAAACTTATCT 59.554 41.667 0.00 0.00 0.00 1.98
1936 1991 4.692135 CGCATCTGACGCATAAACTTATC 58.308 43.478 0.00 0.00 0.00 1.75
1937 1992 4.715520 CGCATCTGACGCATAAACTTAT 57.284 40.909 0.00 0.00 0.00 1.73
1948 2003 1.016130 AACTTGGAGCGCATCTGACG 61.016 55.000 11.47 0.00 0.00 4.35
1949 2004 1.160137 AAACTTGGAGCGCATCTGAC 58.840 50.000 11.47 0.00 0.00 3.51
1950 2005 2.760634 TAAACTTGGAGCGCATCTGA 57.239 45.000 11.47 0.00 0.00 3.27
1951 2006 3.189287 AGTTTAAACTTGGAGCGCATCTG 59.811 43.478 15.22 0.00 35.21 2.90
1952 2007 3.412386 AGTTTAAACTTGGAGCGCATCT 58.588 40.909 15.22 0.00 35.21 2.90
1953 2008 3.188460 TGAGTTTAAACTTGGAGCGCATC 59.812 43.478 21.40 4.01 39.88 3.91
1954 2009 3.146066 TGAGTTTAAACTTGGAGCGCAT 58.854 40.909 21.40 0.00 39.88 4.73
1955 2010 2.566913 TGAGTTTAAACTTGGAGCGCA 58.433 42.857 21.40 10.39 39.88 6.09
1956 2011 3.831715 ATGAGTTTAAACTTGGAGCGC 57.168 42.857 21.40 0.00 39.88 5.92
1957 2012 4.917415 CCAAATGAGTTTAAACTTGGAGCG 59.083 41.667 23.77 12.01 39.88 5.03
1958 2013 5.920840 GTCCAAATGAGTTTAAACTTGGAGC 59.079 40.000 28.15 21.26 39.02 4.70
1959 2014 7.038154 TGTCCAAATGAGTTTAAACTTGGAG 57.962 36.000 28.15 16.03 39.02 3.86
1960 2015 7.505585 AGATGTCCAAATGAGTTTAAACTTGGA 59.494 33.333 25.54 25.54 39.88 3.53
1961 2016 7.596248 CAGATGTCCAAATGAGTTTAAACTTGG 59.404 37.037 22.75 22.75 39.88 3.61
1962 2017 8.352201 TCAGATGTCCAAATGAGTTTAAACTTG 58.648 33.333 21.40 14.96 39.88 3.16
1963 2018 8.463930 TCAGATGTCCAAATGAGTTTAAACTT 57.536 30.769 21.40 4.52 39.88 2.66
1964 2019 7.308830 GCTCAGATGTCCAAATGAGTTTAAACT 60.309 37.037 20.67 20.67 41.00 2.66
1965 2020 6.803807 GCTCAGATGTCCAAATGAGTTTAAAC 59.196 38.462 10.47 10.47 41.00 2.01
1966 2021 6.489700 TGCTCAGATGTCCAAATGAGTTTAAA 59.510 34.615 11.46 0.00 41.00 1.52
1967 2022 6.003326 TGCTCAGATGTCCAAATGAGTTTAA 58.997 36.000 11.46 0.00 41.00 1.52
1968 2023 5.559770 TGCTCAGATGTCCAAATGAGTTTA 58.440 37.500 11.46 0.96 41.00 2.01
1969 2024 4.401022 TGCTCAGATGTCCAAATGAGTTT 58.599 39.130 11.46 0.00 41.00 2.66
1970 2025 4.025040 TGCTCAGATGTCCAAATGAGTT 57.975 40.909 11.46 0.00 41.00 3.01
1971 2026 3.708403 TGCTCAGATGTCCAAATGAGT 57.292 42.857 11.46 0.00 41.00 3.41
1972 2027 4.008330 AGTTGCTCAGATGTCCAAATGAG 58.992 43.478 7.42 7.42 41.68 2.90
1973 2028 4.005650 GAGTTGCTCAGATGTCCAAATGA 58.994 43.478 0.00 0.00 0.00 2.57
1974 2029 4.008330 AGAGTTGCTCAGATGTCCAAATG 58.992 43.478 0.00 0.00 32.06 2.32
1975 2030 4.260170 GAGAGTTGCTCAGATGTCCAAAT 58.740 43.478 0.00 0.00 43.38 2.32
1976 2031 3.668447 GAGAGTTGCTCAGATGTCCAAA 58.332 45.455 0.00 0.00 43.38 3.28
1977 2032 3.325293 GAGAGTTGCTCAGATGTCCAA 57.675 47.619 0.00 0.00 43.38 3.53
1987 2042 3.911661 ATTTGTTGCTGAGAGTTGCTC 57.088 42.857 0.00 0.00 44.21 4.26
1988 2043 3.633525 TGAATTTGTTGCTGAGAGTTGCT 59.366 39.130 0.00 0.00 0.00 3.91
1989 2044 3.968649 TGAATTTGTTGCTGAGAGTTGC 58.031 40.909 0.00 0.00 0.00 4.17
1990 2045 4.438797 CGTTGAATTTGTTGCTGAGAGTTG 59.561 41.667 0.00 0.00 0.00 3.16
1991 2046 4.096382 ACGTTGAATTTGTTGCTGAGAGTT 59.904 37.500 0.00 0.00 0.00 3.01
1992 2047 3.627577 ACGTTGAATTTGTTGCTGAGAGT 59.372 39.130 0.00 0.00 0.00 3.24
1993 2048 4.214980 ACGTTGAATTTGTTGCTGAGAG 57.785 40.909 0.00 0.00 0.00 3.20
1994 2049 4.630894 AACGTTGAATTTGTTGCTGAGA 57.369 36.364 0.00 0.00 0.00 3.27
1995 2050 4.562394 ACAAACGTTGAATTTGTTGCTGAG 59.438 37.500 0.00 0.00 45.71 3.35
1996 2051 4.489810 ACAAACGTTGAATTTGTTGCTGA 58.510 34.783 0.00 0.00 45.71 4.26
1997 2052 4.838665 ACAAACGTTGAATTTGTTGCTG 57.161 36.364 0.00 0.00 45.71 4.41
1998 2053 6.952935 TTTACAAACGTTGAATTTGTTGCT 57.047 29.167 0.00 0.00 45.71 3.91
1999 2054 7.994851 TTTTTACAAACGTTGAATTTGTTGC 57.005 28.000 0.00 0.00 45.71 4.17
2020 2075 6.977213 ACAGTGTGTGAACAGTAAACTTTTT 58.023 32.000 0.00 0.00 0.00 1.94
2021 2076 6.569179 ACAGTGTGTGAACAGTAAACTTTT 57.431 33.333 0.00 0.00 0.00 2.27
2022 2077 6.430000 AGAACAGTGTGTGAACAGTAAACTTT 59.570 34.615 0.00 0.00 0.00 2.66
2023 2078 5.938125 AGAACAGTGTGTGAACAGTAAACTT 59.062 36.000 0.00 0.00 0.00 2.66
2024 2079 5.351465 CAGAACAGTGTGTGAACAGTAAACT 59.649 40.000 0.00 0.00 0.00 2.66
2025 2080 5.350365 TCAGAACAGTGTGTGAACAGTAAAC 59.650 40.000 0.00 0.00 0.00 2.01
2026 2081 5.350365 GTCAGAACAGTGTGTGAACAGTAAA 59.650 40.000 9.58 0.00 0.00 2.01
2027 2082 4.868171 GTCAGAACAGTGTGTGAACAGTAA 59.132 41.667 9.58 0.00 0.00 2.24
2028 2083 4.430007 GTCAGAACAGTGTGTGAACAGTA 58.570 43.478 9.58 0.00 0.00 2.74
2029 2084 3.262420 GTCAGAACAGTGTGTGAACAGT 58.738 45.455 9.58 0.00 0.00 3.55
2030 2085 2.609459 GGTCAGAACAGTGTGTGAACAG 59.391 50.000 15.81 0.00 0.00 3.16
2031 2086 2.627945 GGTCAGAACAGTGTGTGAACA 58.372 47.619 15.81 0.00 0.00 3.18
2032 2087 1.940613 GGGTCAGAACAGTGTGTGAAC 59.059 52.381 13.33 13.33 0.00 3.18
2033 2088 1.472552 CGGGTCAGAACAGTGTGTGAA 60.473 52.381 9.58 0.00 0.00 3.18
2034 2089 0.104120 CGGGTCAGAACAGTGTGTGA 59.896 55.000 0.00 0.00 0.00 3.58
2035 2090 0.104120 TCGGGTCAGAACAGTGTGTG 59.896 55.000 0.00 0.00 0.00 3.82
2036 2091 1.048601 ATCGGGTCAGAACAGTGTGT 58.951 50.000 0.00 0.00 0.00 3.72
2037 2092 2.169832 AATCGGGTCAGAACAGTGTG 57.830 50.000 0.00 0.00 0.00 3.82
2038 2093 2.158813 ACAAATCGGGTCAGAACAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
2039 2094 2.494059 ACAAATCGGGTCAGAACAGTG 58.506 47.619 0.00 0.00 0.00 3.66
2040 2095 2.930826 ACAAATCGGGTCAGAACAGT 57.069 45.000 0.00 0.00 0.00 3.55
2041 2096 4.568152 AAAACAAATCGGGTCAGAACAG 57.432 40.909 0.00 0.00 0.00 3.16
2042 2097 4.993029 AAAAACAAATCGGGTCAGAACA 57.007 36.364 0.00 0.00 0.00 3.18
2075 2130 3.815856 TTGGACATCTGAGCAGATCTC 57.184 47.619 9.92 8.35 45.78 2.75
2076 2131 4.774660 ATTTGGACATCTGAGCAGATCT 57.225 40.909 9.92 0.00 45.78 2.75
2077 2132 6.054295 ACTTATTTGGACATCTGAGCAGATC 58.946 40.000 9.92 1.73 45.78 2.75
2078 2133 7.799014 TCAACTTATTTGGACATCTGAGCAGAT 60.799 37.037 7.15 7.15 41.00 2.90
2079 2134 5.426689 ACTTATTTGGACATCTGAGCAGA 57.573 39.130 2.23 2.23 42.37 4.26
2080 2135 5.645067 TCAACTTATTTGGACATCTGAGCAG 59.355 40.000 0.00 0.00 35.69 4.24
2081 2136 5.559770 TCAACTTATTTGGACATCTGAGCA 58.440 37.500 0.00 0.00 35.69 4.26
2082 2137 6.500684 TTCAACTTATTTGGACATCTGAGC 57.499 37.500 0.00 0.00 35.69 4.26
2083 2138 9.918630 AAATTTCAACTTATTTGGACATCTGAG 57.081 29.630 0.00 0.00 35.69 3.35
2084 2139 9.695526 CAAATTTCAACTTATTTGGACATCTGA 57.304 29.630 0.00 0.00 37.83 3.27
2093 2148 7.359181 GGTTCGCTCCAAATTTCAACTTATTTG 60.359 37.037 0.00 0.00 40.01 2.32
2094 2149 6.645003 GGTTCGCTCCAAATTTCAACTTATTT 59.355 34.615 0.00 0.00 0.00 1.40
2095 2150 6.015434 AGGTTCGCTCCAAATTTCAACTTATT 60.015 34.615 0.00 0.00 0.00 1.40
2096 2151 5.476945 AGGTTCGCTCCAAATTTCAACTTAT 59.523 36.000 0.00 0.00 0.00 1.73
2097 2152 4.825085 AGGTTCGCTCCAAATTTCAACTTA 59.175 37.500 0.00 0.00 0.00 2.24
2098 2153 3.636764 AGGTTCGCTCCAAATTTCAACTT 59.363 39.130 0.00 0.00 0.00 2.66
2099 2154 3.222603 AGGTTCGCTCCAAATTTCAACT 58.777 40.909 0.00 0.00 0.00 3.16
2100 2155 3.004315 TGAGGTTCGCTCCAAATTTCAAC 59.996 43.478 0.00 0.00 0.00 3.18
2101 2156 3.004315 GTGAGGTTCGCTCCAAATTTCAA 59.996 43.478 0.00 0.00 0.00 2.69
2102 2157 2.552315 GTGAGGTTCGCTCCAAATTTCA 59.448 45.455 0.00 0.00 0.00 2.69
2103 2158 2.412847 CGTGAGGTTCGCTCCAAATTTC 60.413 50.000 0.00 0.00 0.00 2.17
2104 2159 1.535462 CGTGAGGTTCGCTCCAAATTT 59.465 47.619 0.00 0.00 0.00 1.82
2105 2160 1.156736 CGTGAGGTTCGCTCCAAATT 58.843 50.000 0.00 0.00 0.00 1.82
2106 2161 2.840974 CGTGAGGTTCGCTCCAAAT 58.159 52.632 0.00 0.00 0.00 2.32
2107 2162 4.354155 CGTGAGGTTCGCTCCAAA 57.646 55.556 0.00 0.00 0.00 3.28
2114 2169 2.478894 ACAAGTTTATGCGTGAGGTTCG 59.521 45.455 0.00 0.00 0.00 3.95
2115 2170 3.746492 AGACAAGTTTATGCGTGAGGTTC 59.254 43.478 0.00 0.00 0.00 3.62
2116 2171 3.498397 CAGACAAGTTTATGCGTGAGGTT 59.502 43.478 0.00 0.00 0.00 3.50
2117 2172 3.067106 CAGACAAGTTTATGCGTGAGGT 58.933 45.455 0.00 0.00 0.00 3.85
2118 2173 3.067106 ACAGACAAGTTTATGCGTGAGG 58.933 45.455 0.00 0.00 0.00 3.86
2119 2174 3.740832 TGACAGACAAGTTTATGCGTGAG 59.259 43.478 0.00 0.00 0.00 3.51
2120 2175 3.493129 GTGACAGACAAGTTTATGCGTGA 59.507 43.478 0.00 0.00 0.00 4.35
2121 2176 3.247411 TGTGACAGACAAGTTTATGCGTG 59.753 43.478 0.00 0.00 0.00 5.34
2122 2177 3.247648 GTGTGACAGACAAGTTTATGCGT 59.752 43.478 0.00 0.00 35.91 5.24
2123 2178 3.247411 TGTGTGACAGACAAGTTTATGCG 59.753 43.478 2.37 0.00 35.91 4.73
2124 2179 4.811555 TGTGTGACAGACAAGTTTATGC 57.188 40.909 2.37 0.00 35.91 3.14
2125 2180 7.471721 TCTTTTGTGTGACAGACAAGTTTATG 58.528 34.615 16.65 6.40 35.91 1.90
2126 2181 7.624360 TCTTTTGTGTGACAGACAAGTTTAT 57.376 32.000 16.65 0.00 35.91 1.40
2127 2182 7.441890 TTCTTTTGTGTGACAGACAAGTTTA 57.558 32.000 16.65 1.35 35.91 2.01
2128 2183 5.957842 TCTTTTGTGTGACAGACAAGTTT 57.042 34.783 16.65 0.00 35.91 2.66
2129 2184 5.957842 TTCTTTTGTGTGACAGACAAGTT 57.042 34.783 16.65 0.00 35.91 2.66
2130 2185 5.957842 TTTCTTTTGTGTGACAGACAAGT 57.042 34.783 16.65 0.00 35.91 3.16
2131 2186 6.254157 CCAATTTCTTTTGTGTGACAGACAAG 59.746 38.462 16.65 7.96 35.91 3.16
2132 2187 6.071672 TCCAATTTCTTTTGTGTGACAGACAA 60.072 34.615 13.74 13.74 35.91 3.18
2133 2188 5.417266 TCCAATTTCTTTTGTGTGACAGACA 59.583 36.000 0.41 0.41 0.00 3.41
2134 2189 5.890334 TCCAATTTCTTTTGTGTGACAGAC 58.110 37.500 0.00 0.00 0.00 3.51
2135 2190 6.713762 ATCCAATTTCTTTTGTGTGACAGA 57.286 33.333 0.00 0.00 0.00 3.41
2136 2191 9.480053 AAATATCCAATTTCTTTTGTGTGACAG 57.520 29.630 0.00 0.00 0.00 3.51
2137 2192 9.829507 AAAATATCCAATTTCTTTTGTGTGACA 57.170 25.926 0.00 0.00 0.00 3.58
2192 2247 2.886523 CTCATCTGCACCCAGTCAAAAA 59.113 45.455 0.00 0.00 40.09 1.94
2193 2248 2.507484 CTCATCTGCACCCAGTCAAAA 58.493 47.619 0.00 0.00 40.09 2.44
2194 2249 1.883638 GCTCATCTGCACCCAGTCAAA 60.884 52.381 0.00 0.00 40.09 2.69
2195 2250 0.321919 GCTCATCTGCACCCAGTCAA 60.322 55.000 0.00 0.00 40.09 3.18
2196 2251 1.297689 GCTCATCTGCACCCAGTCA 59.702 57.895 0.00 0.00 40.09 3.41
2197 2252 1.451028 GGCTCATCTGCACCCAGTC 60.451 63.158 0.00 0.00 40.09 3.51
2198 2253 0.618680 TAGGCTCATCTGCACCCAGT 60.619 55.000 0.00 0.00 40.09 4.00
2199 2254 0.106335 CTAGGCTCATCTGCACCCAG 59.894 60.000 0.00 0.00 40.54 4.45
2200 2255 1.340399 CCTAGGCTCATCTGCACCCA 61.340 60.000 0.00 0.00 34.04 4.51
2201 2256 1.449353 CCTAGGCTCATCTGCACCC 59.551 63.158 0.00 0.00 34.04 4.61
2202 2257 1.227793 GCCTAGGCTCATCTGCACC 60.228 63.158 27.17 0.00 38.26 5.01
2203 2258 0.813210 GTGCCTAGGCTCATCTGCAC 60.813 60.000 33.07 17.16 41.75 4.57
2204 2259 1.524002 GTGCCTAGGCTCATCTGCA 59.476 57.895 33.07 8.77 42.51 4.41
2205 2260 1.227793 GGTGCCTAGGCTCATCTGC 60.228 63.158 33.07 13.49 42.51 4.26
2206 2261 1.068753 CGGTGCCTAGGCTCATCTG 59.931 63.158 33.07 20.42 42.51 2.90
2207 2262 0.687757 TTCGGTGCCTAGGCTCATCT 60.688 55.000 33.07 0.00 42.51 2.90
2208 2263 0.394565 ATTCGGTGCCTAGGCTCATC 59.605 55.000 33.07 19.66 42.51 2.92
2209 2264 0.839946 AATTCGGTGCCTAGGCTCAT 59.160 50.000 33.07 16.84 42.51 2.90
2210 2265 0.107703 CAATTCGGTGCCTAGGCTCA 60.108 55.000 33.07 15.30 42.51 4.26
2211 2266 0.815615 CCAATTCGGTGCCTAGGCTC 60.816 60.000 33.07 28.77 42.51 4.70
2212 2267 1.224592 CCAATTCGGTGCCTAGGCT 59.775 57.895 33.07 10.39 42.51 4.58
2213 2268 1.823899 CCCAATTCGGTGCCTAGGC 60.824 63.158 27.71 27.71 42.35 3.93
2214 2269 0.034477 AACCCAATTCGGTGCCTAGG 60.034 55.000 3.67 3.67 35.83 3.02
2215 2270 1.834188 AAACCCAATTCGGTGCCTAG 58.166 50.000 0.00 0.00 35.83 3.02
2216 2271 2.164338 GAAAACCCAATTCGGTGCCTA 58.836 47.619 0.00 0.00 35.83 3.93
2217 2272 0.966179 GAAAACCCAATTCGGTGCCT 59.034 50.000 0.00 0.00 35.83 4.75
2218 2273 0.676736 TGAAAACCCAATTCGGTGCC 59.323 50.000 0.00 0.00 35.83 5.01
2219 2274 1.339929 AGTGAAAACCCAATTCGGTGC 59.660 47.619 0.00 0.00 35.83 5.01
2220 2275 3.726291 AAGTGAAAACCCAATTCGGTG 57.274 42.857 0.00 0.00 35.83 4.94
2221 2276 3.739830 GCAAAGTGAAAACCCAATTCGGT 60.740 43.478 0.00 0.00 37.93 4.69
2222 2277 2.799978 GCAAAGTGAAAACCCAATTCGG 59.200 45.455 0.00 0.00 0.00 4.30
2223 2278 3.716601 AGCAAAGTGAAAACCCAATTCG 58.283 40.909 0.00 0.00 0.00 3.34
2224 2279 7.575365 CAATTAGCAAAGTGAAAACCCAATTC 58.425 34.615 0.00 0.00 32.43 2.17
2225 2280 6.017192 GCAATTAGCAAAGTGAAAACCCAATT 60.017 34.615 0.00 0.00 44.79 2.32
2226 2281 5.469760 GCAATTAGCAAAGTGAAAACCCAAT 59.530 36.000 0.00 0.00 44.79 3.16
2227 2282 4.813697 GCAATTAGCAAAGTGAAAACCCAA 59.186 37.500 0.00 0.00 44.79 4.12
2228 2283 4.376146 GCAATTAGCAAAGTGAAAACCCA 58.624 39.130 0.00 0.00 44.79 4.51
2229 2284 4.990543 GCAATTAGCAAAGTGAAAACCC 57.009 40.909 0.00 0.00 44.79 4.11
2256 2311 3.326006 AGAGTTCAGGAAGAGACATGCAA 59.674 43.478 0.00 0.00 0.00 4.08
2259 2314 6.589523 CACTTTAGAGTTCAGGAAGAGACATG 59.410 42.308 0.00 0.00 32.54 3.21
2260 2315 6.495181 TCACTTTAGAGTTCAGGAAGAGACAT 59.505 38.462 0.00 0.00 32.54 3.06
2335 2393 2.703416 GACAAGTGACATGCCATGAGA 58.297 47.619 12.53 0.00 0.00 3.27
2353 2411 4.077184 TGCCGATGGTGGGTCGAC 62.077 66.667 7.13 7.13 41.40 4.20
2365 2423 1.227823 CCAGAAGTGGTTGTGCCGA 60.228 57.895 0.00 0.00 39.30 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.