Multiple sequence alignment - TraesCS6B01G239300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G239300 chr6B 100.000 3485 0 0 1 3485 415901523 415898039 0.000000e+00 6436
1 TraesCS6B01G239300 chr7B 97.173 2936 71 6 555 3485 223705667 223708595 0.000000e+00 4951
2 TraesCS6B01G239300 chr4B 83.701 1043 159 8 2446 3479 74245487 74244447 0.000000e+00 974
3 TraesCS6B01G239300 chr3A 83.126 1043 164 9 2446 3479 696777737 696778776 0.000000e+00 941
4 TraesCS6B01G239300 chr3A 82.934 1043 167 8 2446 3479 696806933 696807973 0.000000e+00 929
5 TraesCS6B01G239300 chr3A 82.934 1043 165 9 2446 3479 696850832 696851870 0.000000e+00 928
6 TraesCS6B01G239300 chr3A 82.838 1043 165 10 2446 3479 696828357 696829394 0.000000e+00 922
7 TraesCS6B01G239300 chr3A 82.775 1045 167 10 2446 3479 696873613 696874655 0.000000e+00 920
8 TraesCS6B01G239300 chr2B 83.126 1043 165 8 2446 3479 641592681 641591641 0.000000e+00 941
9 TraesCS6B01G239300 chr2B 97.317 410 11 0 140 549 386673559 386673968 0.000000e+00 697
10 TraesCS6B01G239300 chr4A 97.362 417 11 0 136 552 708205650 708206066 0.000000e+00 710
11 TraesCS6B01G239300 chr5B 94.986 359 18 0 142 500 492797807 492797449 6.530000e-157 564
12 TraesCS6B01G239300 chr5B 91.753 291 20 1 3199 3485 315939505 315939215 5.420000e-108 401
13 TraesCS6B01G239300 chr5D 75.682 843 203 2 2446 3287 24874958 24875799 1.500000e-113 420
14 TraesCS6B01G239300 chr3D 91.525 177 13 1 376 552 482342714 482342888 3.480000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G239300 chr6B 415898039 415901523 3484 True 6436 6436 100.000 1 3485 1 chr6B.!!$R1 3484
1 TraesCS6B01G239300 chr7B 223705667 223708595 2928 False 4951 4951 97.173 555 3485 1 chr7B.!!$F1 2930
2 TraesCS6B01G239300 chr4B 74244447 74245487 1040 True 974 974 83.701 2446 3479 1 chr4B.!!$R1 1033
3 TraesCS6B01G239300 chr3A 696777737 696778776 1039 False 941 941 83.126 2446 3479 1 chr3A.!!$F1 1033
4 TraesCS6B01G239300 chr3A 696806933 696807973 1040 False 929 929 82.934 2446 3479 1 chr3A.!!$F2 1033
5 TraesCS6B01G239300 chr3A 696850832 696851870 1038 False 928 928 82.934 2446 3479 1 chr3A.!!$F4 1033
6 TraesCS6B01G239300 chr3A 696828357 696829394 1037 False 922 922 82.838 2446 3479 1 chr3A.!!$F3 1033
7 TraesCS6B01G239300 chr3A 696873613 696874655 1042 False 920 920 82.775 2446 3479 1 chr3A.!!$F5 1033
8 TraesCS6B01G239300 chr2B 641591641 641592681 1040 True 941 941 83.126 2446 3479 1 chr2B.!!$R1 1033
9 TraesCS6B01G239300 chr5D 24874958 24875799 841 False 420 420 75.682 2446 3287 1 chr5D.!!$F1 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.031449 GCCAACAACAGCGCCTTTTA 59.969 50.0 2.29 0.0 0.00 1.52 F
126 127 0.036022 AGCCTCAGAAGCAGTTCCAC 59.964 55.0 0.00 0.0 32.48 4.02 F
127 128 0.036022 GCCTCAGAAGCAGTTCCACT 59.964 55.0 0.00 0.0 32.48 4.00 F
617 618 0.036671 TGACTCGACAGCGACTCCTA 60.037 55.0 0.00 0.0 42.51 2.94 F
997 998 0.391793 GAGAACTCTTTCCCTGGCCG 60.392 60.0 0.00 0.0 31.28 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1856 0.331278 CTTCCATGCTTACCACCCCA 59.669 55.000 0.00 0.00 0.00 4.96 R
1891 1892 1.200020 GCCCCATTGAGTGTTCTTTCG 59.800 52.381 0.00 0.00 0.00 3.46 R
1925 1926 2.625639 TCTCCTCCTCTTTCCTTGCTT 58.374 47.619 0.00 0.00 0.00 3.91 R
2463 2464 3.776347 TTTTGGTTCGCCGGGCTGA 62.776 57.895 18.34 13.13 41.18 4.26 R
2778 2781 4.119862 CCATATATGCCCGTAAATCTCCG 58.880 47.826 7.24 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.651975 TTATCTAACCTAGAGCTACAAGGC 57.348 41.667 8.11 0.00 38.38 4.35
32 33 3.297736 TCTAACCTAGAGCTACAAGGCC 58.702 50.000 0.00 0.00 33.42 5.19
33 34 1.952621 AACCTAGAGCTACAAGGCCA 58.047 50.000 5.01 0.00 33.42 5.36
34 35 2.182516 ACCTAGAGCTACAAGGCCAT 57.817 50.000 5.01 0.00 33.42 4.40
35 36 2.043227 ACCTAGAGCTACAAGGCCATC 58.957 52.381 5.01 0.00 33.42 3.51
36 37 1.000283 CCTAGAGCTACAAGGCCATCG 60.000 57.143 5.01 0.00 0.00 3.84
37 38 1.000283 CTAGAGCTACAAGGCCATCGG 60.000 57.143 5.01 0.00 0.00 4.18
38 39 0.978146 AGAGCTACAAGGCCATCGGT 60.978 55.000 5.01 0.00 0.00 4.69
39 40 0.811616 GAGCTACAAGGCCATCGGTG 60.812 60.000 5.01 0.00 0.00 4.94
50 51 2.979814 CCATCGGTGGTTGATACAGA 57.020 50.000 6.53 0.00 40.83 3.41
51 52 2.826428 CCATCGGTGGTTGATACAGAG 58.174 52.381 6.53 0.00 40.83 3.35
52 53 2.430694 CCATCGGTGGTTGATACAGAGA 59.569 50.000 6.53 0.00 40.83 3.10
53 54 3.448686 CATCGGTGGTTGATACAGAGAC 58.551 50.000 0.00 0.00 0.00 3.36
54 55 2.803956 TCGGTGGTTGATACAGAGACT 58.196 47.619 0.00 0.00 0.00 3.24
55 56 2.753452 TCGGTGGTTGATACAGAGACTC 59.247 50.000 0.00 0.00 0.00 3.36
56 57 2.478031 CGGTGGTTGATACAGAGACTCG 60.478 54.545 0.00 0.00 0.00 4.18
57 58 2.492484 GGTGGTTGATACAGAGACTCGT 59.508 50.000 0.00 1.28 0.00 4.18
58 59 3.427773 GGTGGTTGATACAGAGACTCGTC 60.428 52.174 0.00 0.00 0.00 4.20
59 60 2.753452 TGGTTGATACAGAGACTCGTCC 59.247 50.000 0.00 0.00 0.00 4.79
60 61 2.223294 GGTTGATACAGAGACTCGTCCG 60.223 54.545 0.00 0.00 0.00 4.79
61 62 1.015109 TGATACAGAGACTCGTCCGC 58.985 55.000 0.00 0.00 0.00 5.54
62 63 1.301423 GATACAGAGACTCGTCCGCT 58.699 55.000 0.00 0.00 0.00 5.52
63 64 2.159000 TGATACAGAGACTCGTCCGCTA 60.159 50.000 0.00 0.00 0.00 4.26
64 65 1.649664 TACAGAGACTCGTCCGCTAC 58.350 55.000 0.00 0.00 0.00 3.58
65 66 1.025647 ACAGAGACTCGTCCGCTACC 61.026 60.000 0.00 0.00 0.00 3.18
66 67 1.814586 AGAGACTCGTCCGCTACCG 60.815 63.158 0.00 0.00 0.00 4.02
67 68 1.812922 GAGACTCGTCCGCTACCGA 60.813 63.158 0.00 0.00 36.29 4.69
94 95 4.704833 GCCTCTGCTCGGCCAACA 62.705 66.667 2.24 0.00 41.73 3.33
95 96 2.032528 CCTCTGCTCGGCCAACAA 59.967 61.111 2.24 0.00 0.00 2.83
96 97 2.328099 CCTCTGCTCGGCCAACAAC 61.328 63.158 2.24 0.00 0.00 3.32
97 98 1.597854 CTCTGCTCGGCCAACAACA 60.598 57.895 2.24 0.00 0.00 3.33
98 99 1.572085 CTCTGCTCGGCCAACAACAG 61.572 60.000 2.24 2.51 0.00 3.16
99 100 3.259425 CTGCTCGGCCAACAACAGC 62.259 63.158 2.24 0.00 0.00 4.40
100 101 4.389576 GCTCGGCCAACAACAGCG 62.390 66.667 2.24 0.00 0.00 5.18
101 102 4.389576 CTCGGCCAACAACAGCGC 62.390 66.667 2.24 0.00 0.00 5.92
104 105 3.605664 GGCCAACAACAGCGCCTT 61.606 61.111 2.29 0.00 38.41 4.35
105 106 2.417097 GCCAACAACAGCGCCTTT 59.583 55.556 2.29 0.00 0.00 3.11
106 107 1.227234 GCCAACAACAGCGCCTTTT 60.227 52.632 2.29 0.00 0.00 2.27
107 108 0.031449 GCCAACAACAGCGCCTTTTA 59.969 50.000 2.29 0.00 0.00 1.52
108 109 1.930371 GCCAACAACAGCGCCTTTTAG 60.930 52.381 2.29 0.00 0.00 1.85
109 110 1.408422 CAACAACAGCGCCTTTTAGC 58.592 50.000 2.29 0.00 0.00 3.09
110 111 0.313987 AACAACAGCGCCTTTTAGCC 59.686 50.000 2.29 0.00 0.00 3.93
111 112 0.537371 ACAACAGCGCCTTTTAGCCT 60.537 50.000 2.29 0.00 0.00 4.58
112 113 0.169009 CAACAGCGCCTTTTAGCCTC 59.831 55.000 2.29 0.00 0.00 4.70
113 114 0.250727 AACAGCGCCTTTTAGCCTCA 60.251 50.000 2.29 0.00 0.00 3.86
114 115 0.674895 ACAGCGCCTTTTAGCCTCAG 60.675 55.000 2.29 0.00 0.00 3.35
115 116 0.391661 CAGCGCCTTTTAGCCTCAGA 60.392 55.000 2.29 0.00 0.00 3.27
116 117 0.324943 AGCGCCTTTTAGCCTCAGAA 59.675 50.000 2.29 0.00 0.00 3.02
117 118 0.729690 GCGCCTTTTAGCCTCAGAAG 59.270 55.000 0.00 0.00 0.00 2.85
118 119 0.729690 CGCCTTTTAGCCTCAGAAGC 59.270 55.000 0.00 0.00 0.00 3.86
119 120 1.826385 GCCTTTTAGCCTCAGAAGCA 58.174 50.000 0.00 0.00 0.00 3.91
120 121 1.742268 GCCTTTTAGCCTCAGAAGCAG 59.258 52.381 0.00 0.00 0.00 4.24
121 122 2.877708 GCCTTTTAGCCTCAGAAGCAGT 60.878 50.000 0.00 0.00 0.00 4.40
122 123 3.416156 CCTTTTAGCCTCAGAAGCAGTT 58.584 45.455 0.00 0.00 0.00 3.16
123 124 3.438434 CCTTTTAGCCTCAGAAGCAGTTC 59.562 47.826 0.00 0.00 0.00 3.01
124 125 2.770164 TTAGCCTCAGAAGCAGTTCC 57.230 50.000 0.00 0.00 32.48 3.62
125 126 1.644509 TAGCCTCAGAAGCAGTTCCA 58.355 50.000 0.00 0.00 32.48 3.53
126 127 0.036022 AGCCTCAGAAGCAGTTCCAC 59.964 55.000 0.00 0.00 32.48 4.02
127 128 0.036022 GCCTCAGAAGCAGTTCCACT 59.964 55.000 0.00 0.00 32.48 4.00
128 129 1.544314 GCCTCAGAAGCAGTTCCACTT 60.544 52.381 0.00 0.00 32.48 3.16
129 130 2.289694 GCCTCAGAAGCAGTTCCACTTA 60.290 50.000 0.00 0.00 32.48 2.24
130 131 3.594134 CCTCAGAAGCAGTTCCACTTAG 58.406 50.000 0.00 0.00 32.48 2.18
131 132 3.259374 CCTCAGAAGCAGTTCCACTTAGA 59.741 47.826 0.00 0.00 32.48 2.10
132 133 4.262635 CCTCAGAAGCAGTTCCACTTAGAA 60.263 45.833 0.00 0.00 32.48 2.10
133 134 4.887748 TCAGAAGCAGTTCCACTTAGAAG 58.112 43.478 0.00 0.00 32.48 2.85
134 135 4.345257 TCAGAAGCAGTTCCACTTAGAAGT 59.655 41.667 0.00 0.00 40.60 3.01
135 136 5.538813 TCAGAAGCAGTTCCACTTAGAAGTA 59.461 40.000 0.00 0.00 37.08 2.24
136 137 6.211584 TCAGAAGCAGTTCCACTTAGAAGTAT 59.788 38.462 0.00 0.00 37.08 2.12
137 138 7.396339 TCAGAAGCAGTTCCACTTAGAAGTATA 59.604 37.037 0.00 0.00 37.08 1.47
138 139 7.489757 CAGAAGCAGTTCCACTTAGAAGTATAC 59.510 40.741 0.00 0.00 37.08 1.47
139 140 5.892568 AGCAGTTCCACTTAGAAGTATACG 58.107 41.667 0.00 0.00 37.08 3.06
140 141 5.041940 GCAGTTCCACTTAGAAGTATACGG 58.958 45.833 0.00 0.00 37.08 4.02
141 142 5.589192 CAGTTCCACTTAGAAGTATACGGG 58.411 45.833 0.00 0.00 37.08 5.28
142 143 4.648307 AGTTCCACTTAGAAGTATACGGGG 59.352 45.833 0.00 0.00 37.08 5.73
143 144 2.961062 TCCACTTAGAAGTATACGGGGC 59.039 50.000 0.00 0.00 37.08 5.80
144 145 2.963782 CCACTTAGAAGTATACGGGGCT 59.036 50.000 0.00 0.00 37.08 5.19
145 146 3.243771 CCACTTAGAAGTATACGGGGCTG 60.244 52.174 0.00 0.00 37.08 4.85
146 147 3.383825 CACTTAGAAGTATACGGGGCTGT 59.616 47.826 0.00 0.00 37.08 4.40
147 148 4.028825 ACTTAGAAGTATACGGGGCTGTT 58.971 43.478 0.00 0.00 37.52 3.16
148 149 4.468868 ACTTAGAAGTATACGGGGCTGTTT 59.531 41.667 0.00 0.00 37.52 2.83
149 150 3.261981 AGAAGTATACGGGGCTGTTTG 57.738 47.619 0.00 0.00 0.00 2.93
150 151 2.093128 AGAAGTATACGGGGCTGTTTGG 60.093 50.000 0.00 0.00 0.00 3.28
151 152 1.575419 AGTATACGGGGCTGTTTGGA 58.425 50.000 0.00 0.00 0.00 3.53
152 153 2.124411 AGTATACGGGGCTGTTTGGAT 58.876 47.619 0.00 0.00 0.00 3.41
153 154 3.311091 AGTATACGGGGCTGTTTGGATA 58.689 45.455 0.00 0.00 0.00 2.59
154 155 2.930826 ATACGGGGCTGTTTGGATAG 57.069 50.000 0.00 0.00 0.00 2.08
155 156 0.179468 TACGGGGCTGTTTGGATAGC 59.821 55.000 0.00 0.00 39.10 2.97
156 157 1.224592 CGGGGCTGTTTGGATAGCT 59.775 57.895 0.00 0.00 39.68 3.32
157 158 0.394352 CGGGGCTGTTTGGATAGCTT 60.394 55.000 0.00 0.00 39.68 3.74
158 159 1.393603 GGGGCTGTTTGGATAGCTTC 58.606 55.000 0.00 0.00 39.68 3.86
159 160 1.393603 GGGCTGTTTGGATAGCTTCC 58.606 55.000 0.00 0.00 45.69 3.46
160 161 1.064389 GGGCTGTTTGGATAGCTTCCT 60.064 52.381 13.76 0.00 45.68 3.36
161 162 2.019984 GGCTGTTTGGATAGCTTCCTG 58.980 52.381 13.76 3.81 45.68 3.86
162 163 2.356125 GGCTGTTTGGATAGCTTCCTGA 60.356 50.000 13.76 3.30 45.68 3.86
163 164 3.549794 GCTGTTTGGATAGCTTCCTGAT 58.450 45.455 13.76 0.00 45.68 2.90
164 165 4.444876 GGCTGTTTGGATAGCTTCCTGATA 60.445 45.833 13.76 3.49 45.68 2.15
165 166 4.754114 GCTGTTTGGATAGCTTCCTGATAG 59.246 45.833 13.76 10.86 45.68 2.08
166 167 5.453903 GCTGTTTGGATAGCTTCCTGATAGA 60.454 44.000 13.76 0.00 45.68 1.98
167 168 6.743773 GCTGTTTGGATAGCTTCCTGATAGAT 60.744 42.308 13.76 0.00 45.68 1.98
168 169 7.141758 TGTTTGGATAGCTTCCTGATAGATT 57.858 36.000 13.76 0.00 45.68 2.40
169 170 8.262601 TGTTTGGATAGCTTCCTGATAGATTA 57.737 34.615 13.76 0.00 45.68 1.75
170 171 8.884323 TGTTTGGATAGCTTCCTGATAGATTAT 58.116 33.333 13.76 0.00 45.68 1.28
171 172 9.732130 GTTTGGATAGCTTCCTGATAGATTATT 57.268 33.333 13.76 0.00 45.68 1.40
172 173 9.730705 TTTGGATAGCTTCCTGATAGATTATTG 57.269 33.333 13.76 0.00 45.68 1.90
173 174 7.334090 TGGATAGCTTCCTGATAGATTATTGC 58.666 38.462 13.76 0.00 45.68 3.56
174 175 6.765512 GGATAGCTTCCTGATAGATTATTGCC 59.234 42.308 0.00 0.00 41.78 4.52
175 176 5.839517 AGCTTCCTGATAGATTATTGCCT 57.160 39.130 0.00 0.00 0.00 4.75
176 177 5.558818 AGCTTCCTGATAGATTATTGCCTG 58.441 41.667 0.00 0.00 0.00 4.85
177 178 4.699257 GCTTCCTGATAGATTATTGCCTGG 59.301 45.833 0.00 0.00 0.00 4.45
178 179 4.292186 TCCTGATAGATTATTGCCTGGC 57.708 45.455 12.87 12.87 0.00 4.85
179 180 3.009473 TCCTGATAGATTATTGCCTGGCC 59.991 47.826 17.53 0.00 0.00 5.36
180 181 3.009916 CCTGATAGATTATTGCCTGGCCT 59.990 47.826 17.53 7.17 0.00 5.19
181 182 4.008330 CTGATAGATTATTGCCTGGCCTG 58.992 47.826 17.53 2.54 0.00 4.85
182 183 2.957402 TAGATTATTGCCTGGCCTGG 57.043 50.000 23.89 23.89 0.00 4.45
200 201 1.153706 GCATGTGCCTGGATGTTGC 60.154 57.895 0.00 0.00 34.31 4.17
201 202 1.514087 CATGTGCCTGGATGTTGCC 59.486 57.895 0.00 0.00 0.00 4.52
202 203 0.968901 CATGTGCCTGGATGTTGCCT 60.969 55.000 0.00 0.00 0.00 4.75
203 204 0.968901 ATGTGCCTGGATGTTGCCTG 60.969 55.000 0.00 0.00 0.00 4.85
204 205 2.036098 TGCCTGGATGTTGCCTGG 59.964 61.111 0.00 0.00 46.57 4.45
205 206 2.356278 GCCTGGATGTTGCCTGGA 59.644 61.111 10.10 0.00 46.73 3.86
206 207 1.304381 GCCTGGATGTTGCCTGGAA 60.304 57.895 10.10 0.00 46.73 3.53
207 208 0.899717 GCCTGGATGTTGCCTGGAAA 60.900 55.000 10.10 0.00 46.73 3.13
208 209 1.180029 CCTGGATGTTGCCTGGAAAG 58.820 55.000 0.00 0.00 46.73 2.62
209 210 1.548582 CCTGGATGTTGCCTGGAAAGT 60.549 52.381 0.00 0.00 46.73 2.66
210 211 1.542915 CTGGATGTTGCCTGGAAAGTG 59.457 52.381 0.00 0.00 0.00 3.16
211 212 1.133513 TGGATGTTGCCTGGAAAGTGT 60.134 47.619 0.00 0.00 0.00 3.55
212 213 1.963515 GGATGTTGCCTGGAAAGTGTT 59.036 47.619 0.00 0.00 0.00 3.32
213 214 2.365293 GGATGTTGCCTGGAAAGTGTTT 59.635 45.455 0.00 0.00 0.00 2.83
214 215 2.957491 TGTTGCCTGGAAAGTGTTTG 57.043 45.000 0.00 0.00 0.00 2.93
215 216 1.480137 TGTTGCCTGGAAAGTGTTTGG 59.520 47.619 0.00 0.00 0.00 3.28
216 217 1.480545 GTTGCCTGGAAAGTGTTTGGT 59.519 47.619 0.00 0.00 0.00 3.67
217 218 1.859302 TGCCTGGAAAGTGTTTGGTT 58.141 45.000 0.00 0.00 0.00 3.67
218 219 1.480137 TGCCTGGAAAGTGTTTGGTTG 59.520 47.619 0.00 0.00 0.00 3.77
219 220 1.754226 GCCTGGAAAGTGTTTGGTTGA 59.246 47.619 0.00 0.00 0.00 3.18
220 221 2.365293 GCCTGGAAAGTGTTTGGTTGAT 59.635 45.455 0.00 0.00 0.00 2.57
221 222 3.799917 GCCTGGAAAGTGTTTGGTTGATG 60.800 47.826 0.00 0.00 0.00 3.07
222 223 3.384467 CCTGGAAAGTGTTTGGTTGATGT 59.616 43.478 0.00 0.00 0.00 3.06
223 224 4.499696 CCTGGAAAGTGTTTGGTTGATGTC 60.500 45.833 0.00 0.00 0.00 3.06
224 225 3.383185 TGGAAAGTGTTTGGTTGATGTCC 59.617 43.478 0.00 0.00 0.00 4.02
225 226 3.383185 GGAAAGTGTTTGGTTGATGTCCA 59.617 43.478 0.00 0.00 0.00 4.02
226 227 4.499696 GGAAAGTGTTTGGTTGATGTCCAG 60.500 45.833 0.00 0.00 36.28 3.86
227 228 3.576078 AGTGTTTGGTTGATGTCCAGA 57.424 42.857 0.00 0.00 36.28 3.86
228 229 3.897239 AGTGTTTGGTTGATGTCCAGAA 58.103 40.909 0.00 0.00 36.28 3.02
229 230 3.885297 AGTGTTTGGTTGATGTCCAGAAG 59.115 43.478 0.00 0.00 36.28 2.85
230 231 3.882888 GTGTTTGGTTGATGTCCAGAAGA 59.117 43.478 0.00 0.00 36.28 2.87
231 232 4.520492 GTGTTTGGTTGATGTCCAGAAGAT 59.480 41.667 0.00 0.00 36.28 2.40
232 233 4.520111 TGTTTGGTTGATGTCCAGAAGATG 59.480 41.667 0.00 0.00 36.28 2.90
233 234 2.715046 TGGTTGATGTCCAGAAGATGC 58.285 47.619 0.00 0.00 0.00 3.91
234 235 2.019984 GGTTGATGTCCAGAAGATGCC 58.980 52.381 0.00 0.00 0.00 4.40
235 236 2.356535 GGTTGATGTCCAGAAGATGCCT 60.357 50.000 0.00 0.00 0.00 4.75
236 237 2.681848 GTTGATGTCCAGAAGATGCCTG 59.318 50.000 0.00 0.00 0.00 4.85
237 238 2.190538 TGATGTCCAGAAGATGCCTGA 58.809 47.619 0.00 0.00 33.65 3.86
238 239 2.169978 TGATGTCCAGAAGATGCCTGAG 59.830 50.000 0.00 0.00 33.65 3.35
239 240 0.251354 TGTCCAGAAGATGCCTGAGC 59.749 55.000 0.00 0.00 40.48 4.26
240 241 0.540923 GTCCAGAAGATGCCTGAGCT 59.459 55.000 0.00 0.00 40.80 4.09
241 242 1.759445 GTCCAGAAGATGCCTGAGCTA 59.241 52.381 0.00 0.00 40.80 3.32
242 243 2.037901 TCCAGAAGATGCCTGAGCTAG 58.962 52.381 0.00 0.00 40.80 3.42
243 244 1.540797 CCAGAAGATGCCTGAGCTAGC 60.541 57.143 6.62 6.62 40.80 3.42
244 245 0.758123 AGAAGATGCCTGAGCTAGCC 59.242 55.000 12.13 3.49 40.80 3.93
245 246 0.758123 GAAGATGCCTGAGCTAGCCT 59.242 55.000 12.13 0.00 40.80 4.58
246 247 0.469070 AAGATGCCTGAGCTAGCCTG 59.531 55.000 12.13 7.07 40.80 4.85
247 248 1.071128 GATGCCTGAGCTAGCCTGG 59.929 63.158 12.13 16.33 40.80 4.45
248 249 3.117452 ATGCCTGAGCTAGCCTGGC 62.117 63.158 30.09 30.09 45.34 4.85
249 250 4.560743 GCCTGAGCTAGCCTGGCC 62.561 72.222 28.27 17.64 41.13 5.36
250 251 2.767496 CCTGAGCTAGCCTGGCCT 60.767 66.667 16.57 5.19 0.00 5.19
251 252 2.505006 CTGAGCTAGCCTGGCCTG 59.495 66.667 16.57 9.66 0.00 4.85
252 253 3.085947 TGAGCTAGCCTGGCCTGG 61.086 66.667 23.89 23.89 0.00 4.45
253 254 3.871395 GAGCTAGCCTGGCCTGGG 61.871 72.222 28.23 19.17 0.00 4.45
254 255 4.421554 AGCTAGCCTGGCCTGGGA 62.422 66.667 28.23 3.98 0.00 4.37
255 256 3.871395 GCTAGCCTGGCCTGGGAG 61.871 72.222 28.23 13.56 0.00 4.30
256 257 2.366167 CTAGCCTGGCCTGGGAGT 60.366 66.667 28.23 12.03 0.00 3.85
257 258 1.997874 CTAGCCTGGCCTGGGAGTT 60.998 63.158 28.23 10.62 0.00 3.01
258 259 1.977293 CTAGCCTGGCCTGGGAGTTC 61.977 65.000 28.23 12.37 0.00 3.01
259 260 4.432741 GCCTGGCCTGGGAGTTCC 62.433 72.222 28.23 8.27 0.00 3.62
274 275 3.939592 GGAGTTCCCACTGTATGTTTAGC 59.060 47.826 0.00 0.00 31.22 3.09
275 276 3.939592 GAGTTCCCACTGTATGTTTAGCC 59.060 47.826 0.00 0.00 31.22 3.93
276 277 3.587506 AGTTCCCACTGTATGTTTAGCCT 59.412 43.478 0.00 0.00 0.00 4.58
277 278 3.627395 TCCCACTGTATGTTTAGCCTG 57.373 47.619 0.00 0.00 0.00 4.85
278 279 2.238646 TCCCACTGTATGTTTAGCCTGG 59.761 50.000 0.00 0.00 0.00 4.45
279 280 2.017049 CCACTGTATGTTTAGCCTGGC 58.983 52.381 11.65 11.65 0.00 4.85
280 281 2.356125 CCACTGTATGTTTAGCCTGGCT 60.356 50.000 26.52 26.52 43.41 4.75
281 282 3.118408 CCACTGTATGTTTAGCCTGGCTA 60.118 47.826 24.10 24.10 40.44 3.93
291 292 4.689612 TTAGCCTGGCTAAATACCTCTG 57.310 45.455 33.00 0.00 46.30 3.35
292 293 2.482494 AGCCTGGCTAAATACCTCTGT 58.518 47.619 21.98 0.00 36.99 3.41
293 294 2.171448 AGCCTGGCTAAATACCTCTGTG 59.829 50.000 21.98 0.00 36.99 3.66
294 295 2.170607 GCCTGGCTAAATACCTCTGTGA 59.829 50.000 12.43 0.00 0.00 3.58
295 296 3.181450 GCCTGGCTAAATACCTCTGTGAT 60.181 47.826 12.43 0.00 0.00 3.06
296 297 4.384056 CCTGGCTAAATACCTCTGTGATG 58.616 47.826 0.00 0.00 0.00 3.07
297 298 4.141620 CCTGGCTAAATACCTCTGTGATGT 60.142 45.833 0.00 0.00 0.00 3.06
298 299 4.769688 TGGCTAAATACCTCTGTGATGTG 58.230 43.478 0.00 0.00 0.00 3.21
299 300 4.469586 TGGCTAAATACCTCTGTGATGTGA 59.530 41.667 0.00 0.00 0.00 3.58
300 301 5.130975 TGGCTAAATACCTCTGTGATGTGAT 59.869 40.000 0.00 0.00 0.00 3.06
301 302 6.058183 GGCTAAATACCTCTGTGATGTGATT 58.942 40.000 0.00 0.00 0.00 2.57
302 303 7.147567 TGGCTAAATACCTCTGTGATGTGATTA 60.148 37.037 0.00 0.00 0.00 1.75
303 304 7.386299 GGCTAAATACCTCTGTGATGTGATTAG 59.614 40.741 0.00 0.00 0.00 1.73
304 305 7.095439 GCTAAATACCTCTGTGATGTGATTAGC 60.095 40.741 13.04 13.04 33.63 3.09
305 306 3.550437 ACCTCTGTGATGTGATTAGCC 57.450 47.619 0.00 0.00 0.00 3.93
306 307 3.110705 ACCTCTGTGATGTGATTAGCCT 58.889 45.455 0.00 0.00 0.00 4.58
307 308 3.118482 ACCTCTGTGATGTGATTAGCCTG 60.118 47.826 0.00 0.00 0.00 4.85
308 309 3.464907 CTCTGTGATGTGATTAGCCTGG 58.535 50.000 0.00 0.00 0.00 4.45
309 310 1.945394 CTGTGATGTGATTAGCCTGGC 59.055 52.381 11.65 11.65 0.00 4.85
310 311 1.312815 GTGATGTGATTAGCCTGGCC 58.687 55.000 16.57 0.00 0.00 5.36
311 312 0.183492 TGATGTGATTAGCCTGGCCC 59.817 55.000 16.57 3.00 0.00 5.80
312 313 0.183492 GATGTGATTAGCCTGGCCCA 59.817 55.000 16.57 5.81 0.00 5.36
313 314 0.184451 ATGTGATTAGCCTGGCCCAG 59.816 55.000 16.57 2.91 0.00 4.45
330 331 0.527565 CAGGCATTGGAAAAGGGACG 59.472 55.000 0.00 0.00 0.00 4.79
331 332 1.215382 GGCATTGGAAAAGGGACGC 59.785 57.895 0.00 0.00 0.00 5.19
332 333 1.215382 GCATTGGAAAAGGGACGCC 59.785 57.895 0.00 0.00 0.00 5.68
333 334 1.250840 GCATTGGAAAAGGGACGCCT 61.251 55.000 0.00 0.00 0.00 5.52
334 335 0.527565 CATTGGAAAAGGGACGCCTG 59.472 55.000 0.00 0.00 0.00 4.85
335 336 0.611896 ATTGGAAAAGGGACGCCTGG 60.612 55.000 0.00 0.00 0.00 4.45
336 337 1.710996 TTGGAAAAGGGACGCCTGGA 61.711 55.000 0.00 0.00 0.00 3.86
337 338 1.377333 GGAAAAGGGACGCCTGGAG 60.377 63.158 0.00 0.00 0.00 3.86
338 339 1.377333 GAAAAGGGACGCCTGGAGG 60.377 63.158 0.00 0.00 38.53 4.30
339 340 1.838073 GAAAAGGGACGCCTGGAGGA 61.838 60.000 0.00 0.00 37.39 3.71
340 341 1.208165 AAAAGGGACGCCTGGAGGAT 61.208 55.000 0.00 0.00 37.39 3.24
341 342 1.915078 AAAGGGACGCCTGGAGGATG 61.915 60.000 0.00 0.00 37.39 3.51
342 343 4.554036 GGGACGCCTGGAGGATGC 62.554 72.222 0.00 0.00 37.39 3.91
343 344 4.554036 GGACGCCTGGAGGATGCC 62.554 72.222 0.00 0.00 37.39 4.40
344 345 3.474570 GACGCCTGGAGGATGCCT 61.475 66.667 0.00 0.00 37.39 4.75
345 346 3.746949 GACGCCTGGAGGATGCCTG 62.747 68.421 0.00 0.00 37.39 4.85
346 347 4.559063 CGCCTGGAGGATGCCTGG 62.559 72.222 0.00 0.00 46.57 4.45
347 348 3.092511 GCCTGGAGGATGCCTGGA 61.093 66.667 10.10 0.00 46.73 3.86
348 349 3.117452 GCCTGGAGGATGCCTGGAG 62.117 68.421 10.10 0.00 46.73 3.86
349 350 2.450320 CCTGGAGGATGCCTGGAGG 61.450 68.421 0.00 0.00 46.73 4.30
350 351 2.367377 TGGAGGATGCCTGGAGGG 60.367 66.667 0.00 0.00 31.76 4.30
351 352 2.367512 GGAGGATGCCTGGAGGGT 60.368 66.667 0.00 0.00 37.43 4.34
352 353 1.074471 GGAGGATGCCTGGAGGGTA 60.074 63.158 0.00 0.00 37.43 3.69
353 354 1.411651 GGAGGATGCCTGGAGGGTAC 61.412 65.000 0.00 0.00 37.43 3.34
354 355 1.749334 GAGGATGCCTGGAGGGTACG 61.749 65.000 0.00 0.00 37.43 3.67
355 356 1.760875 GGATGCCTGGAGGGTACGA 60.761 63.158 0.00 0.00 37.43 3.43
356 357 1.442148 GATGCCTGGAGGGTACGAC 59.558 63.158 0.00 0.00 37.43 4.34
357 358 1.305802 ATGCCTGGAGGGTACGACA 60.306 57.895 0.00 0.00 37.43 4.35
358 359 1.330655 ATGCCTGGAGGGTACGACAG 61.331 60.000 0.00 0.00 37.43 3.51
359 360 2.893398 CCTGGAGGGTACGACAGC 59.107 66.667 0.00 0.00 0.00 4.40
360 361 1.982395 CCTGGAGGGTACGACAGCA 60.982 63.158 0.00 0.00 0.00 4.41
361 362 1.513158 CTGGAGGGTACGACAGCAG 59.487 63.158 0.00 0.00 0.00 4.24
362 363 2.184579 GGAGGGTACGACAGCAGC 59.815 66.667 0.00 0.00 0.00 5.25
363 364 2.184579 GAGGGTACGACAGCAGCC 59.815 66.667 0.00 0.00 0.00 4.85
364 365 2.283966 AGGGTACGACAGCAGCCT 60.284 61.111 0.00 0.00 36.83 4.58
365 366 2.125512 GGGTACGACAGCAGCCTG 60.126 66.667 0.00 0.00 44.80 4.85
366 367 2.125512 GGTACGACAGCAGCCTGG 60.126 66.667 0.00 0.00 43.53 4.45
367 368 2.646175 GGTACGACAGCAGCCTGGA 61.646 63.158 0.00 0.00 43.53 3.86
368 369 1.292223 GTACGACAGCAGCCTGGAA 59.708 57.895 0.00 0.00 43.53 3.53
369 370 0.320421 GTACGACAGCAGCCTGGAAA 60.320 55.000 0.00 0.00 43.53 3.13
370 371 0.613260 TACGACAGCAGCCTGGAAAT 59.387 50.000 0.00 0.00 43.53 2.17
371 372 0.613260 ACGACAGCAGCCTGGAAATA 59.387 50.000 0.00 0.00 43.53 1.40
372 373 1.009829 CGACAGCAGCCTGGAAATAC 58.990 55.000 0.00 0.00 43.53 1.89
373 374 1.406069 CGACAGCAGCCTGGAAATACT 60.406 52.381 0.00 0.00 43.53 2.12
374 375 2.159099 CGACAGCAGCCTGGAAATACTA 60.159 50.000 0.00 0.00 43.53 1.82
375 376 3.678806 CGACAGCAGCCTGGAAATACTAA 60.679 47.826 0.00 0.00 43.53 2.24
376 377 4.455606 GACAGCAGCCTGGAAATACTAAT 58.544 43.478 0.00 0.00 43.53 1.73
377 378 5.611374 GACAGCAGCCTGGAAATACTAATA 58.389 41.667 0.00 0.00 43.53 0.98
378 379 6.001449 ACAGCAGCCTGGAAATACTAATAA 57.999 37.500 0.00 0.00 43.53 1.40
379 380 6.423182 ACAGCAGCCTGGAAATACTAATAAA 58.577 36.000 0.00 0.00 43.53 1.40
380 381 6.543831 ACAGCAGCCTGGAAATACTAATAAAG 59.456 38.462 0.00 0.00 43.53 1.85
381 382 6.543831 CAGCAGCCTGGAAATACTAATAAAGT 59.456 38.462 0.00 0.00 37.55 2.66
382 383 7.715249 CAGCAGCCTGGAAATACTAATAAAGTA 59.285 37.037 0.00 0.00 38.95 2.24
400 401 8.908786 ATAAAGTATTAGCACATGCATACTGT 57.091 30.769 14.30 12.27 45.16 3.55
401 402 7.630242 AAAGTATTAGCACATGCATACTGTT 57.370 32.000 14.30 0.00 45.16 3.16
402 403 6.609237 AGTATTAGCACATGCATACTGTTG 57.391 37.500 13.29 0.00 45.16 3.33
403 404 6.348498 AGTATTAGCACATGCATACTGTTGA 58.652 36.000 13.29 0.00 45.16 3.18
404 405 4.944962 TTAGCACATGCATACTGTTGAC 57.055 40.909 6.64 0.00 45.16 3.18
405 406 3.063510 AGCACATGCATACTGTTGACT 57.936 42.857 6.64 0.00 45.16 3.41
406 407 3.415212 AGCACATGCATACTGTTGACTT 58.585 40.909 6.64 0.00 45.16 3.01
407 408 3.189910 AGCACATGCATACTGTTGACTTG 59.810 43.478 6.64 0.00 45.16 3.16
408 409 3.189080 GCACATGCATACTGTTGACTTGA 59.811 43.478 0.00 0.00 41.59 3.02
409 410 4.142534 GCACATGCATACTGTTGACTTGAT 60.143 41.667 0.00 0.00 41.59 2.57
410 411 5.329493 CACATGCATACTGTTGACTTGATG 58.671 41.667 0.00 0.00 0.00 3.07
411 412 4.142534 ACATGCATACTGTTGACTTGATGC 60.143 41.667 0.00 3.20 40.04 3.91
412 413 3.678289 TGCATACTGTTGACTTGATGCT 58.322 40.909 9.91 0.00 40.23 3.79
413 414 4.831107 TGCATACTGTTGACTTGATGCTA 58.169 39.130 9.91 0.00 40.23 3.49
414 415 5.430886 TGCATACTGTTGACTTGATGCTAT 58.569 37.500 9.91 0.00 40.23 2.97
415 416 6.581712 TGCATACTGTTGACTTGATGCTATA 58.418 36.000 9.91 0.00 40.23 1.31
416 417 6.479990 TGCATACTGTTGACTTGATGCTATAC 59.520 38.462 9.91 0.00 40.23 1.47
417 418 6.073548 GCATACTGTTGACTTGATGCTATACC 60.074 42.308 2.98 0.00 37.34 2.73
418 419 5.420725 ACTGTTGACTTGATGCTATACCA 57.579 39.130 0.00 0.00 0.00 3.25
419 420 5.423015 ACTGTTGACTTGATGCTATACCAG 58.577 41.667 0.00 0.00 0.00 4.00
420 421 4.769688 TGTTGACTTGATGCTATACCAGG 58.230 43.478 0.00 0.00 0.00 4.45
421 422 3.475566 TGACTTGATGCTATACCAGGC 57.524 47.619 0.00 0.00 0.00 4.85
422 423 2.104792 TGACTTGATGCTATACCAGGCC 59.895 50.000 0.00 0.00 0.00 5.19
423 424 2.104792 GACTTGATGCTATACCAGGCCA 59.895 50.000 5.01 0.00 0.00 5.36
424 425 2.105477 ACTTGATGCTATACCAGGCCAG 59.895 50.000 5.01 0.00 0.00 4.85
425 426 1.059098 TGATGCTATACCAGGCCAGG 58.941 55.000 13.67 13.67 0.00 4.45
426 427 0.322008 GATGCTATACCAGGCCAGGC 60.322 60.000 15.37 1.26 0.00 4.85
427 428 0.769776 ATGCTATACCAGGCCAGGCT 60.770 55.000 15.37 4.47 0.00 4.58
428 429 0.105194 TGCTATACCAGGCCAGGCTA 60.105 55.000 15.37 6.52 0.00 3.93
429 430 0.321996 GCTATACCAGGCCAGGCTAC 59.678 60.000 15.37 0.00 0.00 3.58
430 431 0.603569 CTATACCAGGCCAGGCTACG 59.396 60.000 15.37 0.71 0.00 3.51
431 432 0.186630 TATACCAGGCCAGGCTACGA 59.813 55.000 15.37 0.00 0.00 3.43
432 433 0.689745 ATACCAGGCCAGGCTACGAA 60.690 55.000 15.37 0.00 0.00 3.85
433 434 1.610554 TACCAGGCCAGGCTACGAAC 61.611 60.000 15.37 0.00 0.00 3.95
434 435 2.662596 CAGGCCAGGCTACGAACA 59.337 61.111 12.43 0.00 0.00 3.18
435 436 1.003839 CAGGCCAGGCTACGAACAA 60.004 57.895 12.43 0.00 0.00 2.83
436 437 0.605319 CAGGCCAGGCTACGAACAAA 60.605 55.000 12.43 0.00 0.00 2.83
437 438 0.109723 AGGCCAGGCTACGAACAAAA 59.890 50.000 12.43 0.00 0.00 2.44
438 439 0.240145 GGCCAGGCTACGAACAAAAC 59.760 55.000 12.43 0.00 0.00 2.43
439 440 0.948678 GCCAGGCTACGAACAAAACA 59.051 50.000 3.29 0.00 0.00 2.83
440 441 1.334689 GCCAGGCTACGAACAAAACAC 60.335 52.381 3.29 0.00 0.00 3.32
441 442 2.218603 CCAGGCTACGAACAAAACACT 58.781 47.619 0.00 0.00 0.00 3.55
442 443 2.223377 CCAGGCTACGAACAAAACACTC 59.777 50.000 0.00 0.00 0.00 3.51
443 444 2.223377 CAGGCTACGAACAAAACACTCC 59.777 50.000 0.00 0.00 0.00 3.85
444 445 1.534163 GGCTACGAACAAAACACTCCC 59.466 52.381 0.00 0.00 0.00 4.30
445 446 2.215196 GCTACGAACAAAACACTCCCA 58.785 47.619 0.00 0.00 0.00 4.37
446 447 2.812011 GCTACGAACAAAACACTCCCAT 59.188 45.455 0.00 0.00 0.00 4.00
447 448 3.120304 GCTACGAACAAAACACTCCCATC 60.120 47.826 0.00 0.00 0.00 3.51
448 449 2.925724 ACGAACAAAACACTCCCATCA 58.074 42.857 0.00 0.00 0.00 3.07
449 450 2.878406 ACGAACAAAACACTCCCATCAG 59.122 45.455 0.00 0.00 0.00 2.90
450 451 3.138304 CGAACAAAACACTCCCATCAGA 58.862 45.455 0.00 0.00 0.00 3.27
451 452 3.058914 CGAACAAAACACTCCCATCAGAC 60.059 47.826 0.00 0.00 0.00 3.51
452 453 3.864789 ACAAAACACTCCCATCAGACT 57.135 42.857 0.00 0.00 0.00 3.24
453 454 3.744660 ACAAAACACTCCCATCAGACTC 58.255 45.455 0.00 0.00 0.00 3.36
454 455 3.136443 ACAAAACACTCCCATCAGACTCA 59.864 43.478 0.00 0.00 0.00 3.41
455 456 4.136796 CAAAACACTCCCATCAGACTCAA 58.863 43.478 0.00 0.00 0.00 3.02
456 457 3.692257 AACACTCCCATCAGACTCAAG 57.308 47.619 0.00 0.00 0.00 3.02
457 458 1.277557 ACACTCCCATCAGACTCAAGC 59.722 52.381 0.00 0.00 0.00 4.01
458 459 0.908198 ACTCCCATCAGACTCAAGCC 59.092 55.000 0.00 0.00 0.00 4.35
459 460 1.202330 CTCCCATCAGACTCAAGCCT 58.798 55.000 0.00 0.00 0.00 4.58
460 461 0.907486 TCCCATCAGACTCAAGCCTG 59.093 55.000 0.00 0.00 0.00 4.85
461 462 0.107312 CCCATCAGACTCAAGCCTGG 60.107 60.000 0.00 0.00 0.00 4.45
462 463 0.747283 CCATCAGACTCAAGCCTGGC 60.747 60.000 11.65 11.65 0.00 4.85
463 464 0.747283 CATCAGACTCAAGCCTGGCC 60.747 60.000 16.57 0.00 0.00 5.36
464 465 1.203441 ATCAGACTCAAGCCTGGCCA 61.203 55.000 16.57 4.71 0.00 5.36
465 466 1.376942 CAGACTCAAGCCTGGCCAG 60.377 63.158 26.87 26.87 0.00 4.85
491 492 4.911514 AAAACGTATGTTGTTTCAGGCT 57.088 36.364 0.00 0.00 38.52 4.58
492 493 4.483476 AAACGTATGTTGTTTCAGGCTC 57.517 40.909 0.00 0.00 38.62 4.70
493 494 2.066262 ACGTATGTTGTTTCAGGCTCG 58.934 47.619 0.00 0.00 0.00 5.03
494 495 1.393539 CGTATGTTGTTTCAGGCTCGG 59.606 52.381 0.00 0.00 0.00 4.63
495 496 2.423577 GTATGTTGTTTCAGGCTCGGT 58.576 47.619 0.00 0.00 0.00 4.69
496 497 1.523758 ATGTTGTTTCAGGCTCGGTC 58.476 50.000 0.00 0.00 0.00 4.79
497 498 0.534203 TGTTGTTTCAGGCTCGGTCC 60.534 55.000 0.00 0.00 0.00 4.46
498 499 0.534203 GTTGTTTCAGGCTCGGTCCA 60.534 55.000 0.00 0.00 0.00 4.02
499 500 0.250295 TTGTTTCAGGCTCGGTCCAG 60.250 55.000 0.00 0.00 0.00 3.86
500 501 1.376037 GTTTCAGGCTCGGTCCAGG 60.376 63.158 0.00 0.00 0.00 4.45
501 502 3.254024 TTTCAGGCTCGGTCCAGGC 62.254 63.158 6.74 6.74 39.29 4.85
526 527 4.798433 TGTCGCAGGCACAAGAAT 57.202 50.000 0.00 0.00 36.97 2.40
527 528 2.246841 TGTCGCAGGCACAAGAATG 58.753 52.632 0.00 0.00 36.97 2.67
528 529 0.250252 TGTCGCAGGCACAAGAATGA 60.250 50.000 0.00 0.00 36.97 2.57
529 530 0.445436 GTCGCAGGCACAAGAATGAG 59.555 55.000 0.00 0.00 0.00 2.90
530 531 0.674581 TCGCAGGCACAAGAATGAGG 60.675 55.000 0.00 0.00 0.00 3.86
531 532 0.674581 CGCAGGCACAAGAATGAGGA 60.675 55.000 0.00 0.00 0.00 3.71
532 533 0.807496 GCAGGCACAAGAATGAGGAC 59.193 55.000 0.00 0.00 0.00 3.85
533 534 1.883638 GCAGGCACAAGAATGAGGACA 60.884 52.381 0.00 0.00 0.00 4.02
534 535 1.808945 CAGGCACAAGAATGAGGACAC 59.191 52.381 0.00 0.00 0.00 3.67
535 536 1.168714 GGCACAAGAATGAGGACACC 58.831 55.000 0.00 0.00 0.00 4.16
536 537 1.545428 GGCACAAGAATGAGGACACCA 60.545 52.381 0.00 0.00 0.00 4.17
537 538 2.229792 GCACAAGAATGAGGACACCAA 58.770 47.619 0.00 0.00 0.00 3.67
538 539 2.030805 GCACAAGAATGAGGACACCAAC 60.031 50.000 0.00 0.00 0.00 3.77
539 540 2.554032 CACAAGAATGAGGACACCAACC 59.446 50.000 0.00 0.00 0.00 3.77
540 541 2.174639 ACAAGAATGAGGACACCAACCA 59.825 45.455 0.00 0.00 0.00 3.67
541 542 3.221771 CAAGAATGAGGACACCAACCAA 58.778 45.455 0.00 0.00 0.00 3.67
542 543 3.593442 AGAATGAGGACACCAACCAAA 57.407 42.857 0.00 0.00 0.00 3.28
543 544 3.222603 AGAATGAGGACACCAACCAAAC 58.777 45.455 0.00 0.00 0.00 2.93
544 545 3.117512 AGAATGAGGACACCAACCAAACT 60.118 43.478 0.00 0.00 0.00 2.66
545 546 2.051334 TGAGGACACCAACCAAACTG 57.949 50.000 0.00 0.00 0.00 3.16
546 547 1.562008 TGAGGACACCAACCAAACTGA 59.438 47.619 0.00 0.00 0.00 3.41
547 548 1.947456 GAGGACACCAACCAAACTGAC 59.053 52.381 0.00 0.00 0.00 3.51
548 549 1.029681 GGACACCAACCAAACTGACC 58.970 55.000 0.00 0.00 0.00 4.02
549 550 1.029681 GACACCAACCAAACTGACCC 58.970 55.000 0.00 0.00 0.00 4.46
550 551 0.629058 ACACCAACCAAACTGACCCT 59.371 50.000 0.00 0.00 0.00 4.34
551 552 1.847737 ACACCAACCAAACTGACCCTA 59.152 47.619 0.00 0.00 0.00 3.53
552 553 2.227194 CACCAACCAAACTGACCCTAC 58.773 52.381 0.00 0.00 0.00 3.18
553 554 2.132686 ACCAACCAAACTGACCCTACT 58.867 47.619 0.00 0.00 0.00 2.57
594 595 3.340789 GCCGTTTCTGGCGACTTT 58.659 55.556 0.00 0.00 46.75 2.66
615 616 0.729816 GTTGACTCGACAGCGACTCC 60.730 60.000 0.00 0.00 42.51 3.85
617 618 0.036671 TGACTCGACAGCGACTCCTA 60.037 55.000 0.00 0.00 42.51 2.94
628 629 1.687628 CGACTCCTATTTCGGCGATC 58.312 55.000 11.76 0.98 0.00 3.69
661 662 4.627284 TCCCACTCAAAATCCTTCGTTA 57.373 40.909 0.00 0.00 0.00 3.18
670 671 7.661847 ACTCAAAATCCTTCGTTATCTTCACTT 59.338 33.333 0.00 0.00 0.00 3.16
688 689 2.028020 ACTTCCGTGTCTGATTTCCTCC 60.028 50.000 0.00 0.00 0.00 4.30
696 697 4.223032 GTGTCTGATTTCCTCCAGTTCCTA 59.777 45.833 0.00 0.00 0.00 2.94
728 729 5.365314 GTGAGATCCCTAGACCAATTTCTCT 59.635 44.000 0.00 0.00 31.78 3.10
773 774 4.378874 GGTGCTGCTCATACTCTGTTTTTC 60.379 45.833 0.00 0.00 0.00 2.29
774 775 4.453819 GTGCTGCTCATACTCTGTTTTTCT 59.546 41.667 0.00 0.00 0.00 2.52
775 776 5.639506 GTGCTGCTCATACTCTGTTTTTCTA 59.360 40.000 0.00 0.00 0.00 2.10
776 777 5.639506 TGCTGCTCATACTCTGTTTTTCTAC 59.360 40.000 0.00 0.00 0.00 2.59
777 778 5.639506 GCTGCTCATACTCTGTTTTTCTACA 59.360 40.000 0.00 0.00 0.00 2.74
778 779 6.183360 GCTGCTCATACTCTGTTTTTCTACAG 60.183 42.308 0.00 0.00 45.46 2.74
819 820 1.152963 AGCGATTTCAATCCCGGGG 60.153 57.895 23.50 6.77 31.68 5.73
884 885 5.220854 CGATTGTGAAATACCAGTCAATCCC 60.221 44.000 0.00 0.00 38.35 3.85
951 952 1.109920 TCACCCCAGAGCGAGCTATC 61.110 60.000 0.00 0.00 0.00 2.08
964 965 2.222213 CGAGCTATCAGTAGACACCTCG 59.778 54.545 0.00 0.00 33.61 4.63
967 968 2.298610 CTATCAGTAGACACCTCGCCA 58.701 52.381 0.00 0.00 0.00 5.69
968 969 0.818296 ATCAGTAGACACCTCGCCAC 59.182 55.000 0.00 0.00 0.00 5.01
997 998 0.391793 GAGAACTCTTTCCCTGGCCG 60.392 60.000 0.00 0.00 31.28 6.13
1017 1018 0.822532 GCATGGAGGGGATGCTGAAG 60.823 60.000 0.00 0.00 42.52 3.02
1059 1060 6.758416 AGGCAGAAAAGAAAAGTGTCAAAATC 59.242 34.615 0.00 0.00 0.00 2.17
1102 1103 4.452455 CCTCAACTGTAAGCAAACTACAGG 59.548 45.833 13.07 0.00 43.86 4.00
1105 1106 3.403038 ACTGTAAGCAAACTACAGGCTG 58.597 45.455 14.16 14.16 43.86 4.85
1217 1218 7.394077 TGATTGCAAAGATCTTGGTAGAAATCA 59.606 33.333 19.67 19.67 33.20 2.57
1223 1224 9.578439 CAAAGATCTTGGTAGAAATCATTTTCC 57.422 33.333 9.17 0.00 41.86 3.13
1462 1463 9.202273 GAGAAGTACTTGATATTGATGTGGATC 57.798 37.037 14.14 0.00 0.00 3.36
1519 1520 5.063204 TCAAAGCCCGAATGGATATTACAG 58.937 41.667 0.00 0.00 37.49 2.74
1620 1621 6.015095 TGAGTAATGCAGAGAACAGAGAGAAA 60.015 38.462 0.00 0.00 0.00 2.52
1621 1622 6.763355 AGTAATGCAGAGAACAGAGAGAAAA 58.237 36.000 0.00 0.00 0.00 2.29
1715 1716 2.340337 GCACACAGAAAAATCATGCCC 58.660 47.619 0.00 0.00 0.00 5.36
1855 1856 5.105146 TGGTTAACAAATGTTGCTGGAAACT 60.105 36.000 8.10 0.00 38.90 2.66
1891 1892 2.012673 GAAGTGACAGTCCATCATGGC 58.987 52.381 0.00 0.00 37.47 4.40
1925 1926 0.549902 TGGGGCAAGGAGGAAGATGA 60.550 55.000 0.00 0.00 0.00 2.92
2013 2014 4.062991 GGTCCAAAGAAAGCGAGAAACTA 58.937 43.478 0.00 0.00 0.00 2.24
2020 2021 9.458374 CCAAAGAAAGCGAGAAACTAATTTTTA 57.542 29.630 0.00 0.00 0.00 1.52
2629 2630 3.133721 AGGATGCAGTGGATCAAGTACTC 59.866 47.826 23.97 6.80 0.00 2.59
2778 2781 3.821033 AGTGGAGCAAGATGGTTTTACAC 59.179 43.478 0.00 0.00 0.00 2.90
3269 3276 2.836981 AGAAGAAGGATGTGAGGAGGTG 59.163 50.000 0.00 0.00 0.00 4.00
3304 3311 3.301274 GGTCTACTGCAGAGATAAGGGT 58.699 50.000 23.35 0.00 32.51 4.34
3356 3363 1.078567 GGCAGAAGACCTGAGGCAG 60.079 63.158 0.00 0.00 45.78 4.85
3405 3416 5.728637 AAAAGGATCAAGGCACTAAAAGG 57.271 39.130 0.00 0.00 38.49 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.151596 GCCTTGTAGCTCTAGGTTAGATAAATT 58.848 37.037 12.51 0.00 40.34 1.82
6 7 7.256368 GGCCTTGTAGCTCTAGGTTAGATAAAT 60.256 40.741 0.00 0.00 40.34 1.40
7 8 6.041751 GGCCTTGTAGCTCTAGGTTAGATAAA 59.958 42.308 0.00 0.00 40.34 1.40
8 9 5.539193 GGCCTTGTAGCTCTAGGTTAGATAA 59.461 44.000 0.00 0.00 40.34 1.75
9 10 5.078256 GGCCTTGTAGCTCTAGGTTAGATA 58.922 45.833 0.00 0.00 40.34 1.98
10 11 3.898741 GGCCTTGTAGCTCTAGGTTAGAT 59.101 47.826 0.00 0.00 40.34 1.98
11 12 3.297736 GGCCTTGTAGCTCTAGGTTAGA 58.702 50.000 0.00 0.00 40.34 2.10
12 13 3.031736 TGGCCTTGTAGCTCTAGGTTAG 58.968 50.000 3.32 0.00 40.34 2.34
13 14 3.110293 TGGCCTTGTAGCTCTAGGTTA 57.890 47.619 3.32 3.41 40.34 2.85
14 15 1.952621 TGGCCTTGTAGCTCTAGGTT 58.047 50.000 3.32 0.00 40.34 3.50
15 16 2.043227 GATGGCCTTGTAGCTCTAGGT 58.957 52.381 3.32 0.00 40.34 3.08
16 17 1.000283 CGATGGCCTTGTAGCTCTAGG 60.000 57.143 3.32 0.00 40.98 3.02
17 18 1.000283 CCGATGGCCTTGTAGCTCTAG 60.000 57.143 3.32 0.00 0.00 2.43
18 19 1.040646 CCGATGGCCTTGTAGCTCTA 58.959 55.000 3.32 0.00 0.00 2.43
19 20 0.978146 ACCGATGGCCTTGTAGCTCT 60.978 55.000 3.32 0.00 0.00 4.09
20 21 0.811616 CACCGATGGCCTTGTAGCTC 60.812 60.000 3.32 0.00 0.00 4.09
21 22 1.221840 CACCGATGGCCTTGTAGCT 59.778 57.895 3.32 0.00 0.00 3.32
22 23 1.819632 CCACCGATGGCCTTGTAGC 60.820 63.158 3.32 0.00 39.82 3.58
23 24 4.540153 CCACCGATGGCCTTGTAG 57.460 61.111 3.32 0.00 39.82 2.74
32 33 3.131223 AGTCTCTGTATCAACCACCGATG 59.869 47.826 0.00 0.00 0.00 3.84
33 34 3.366396 AGTCTCTGTATCAACCACCGAT 58.634 45.455 0.00 0.00 0.00 4.18
34 35 2.753452 GAGTCTCTGTATCAACCACCGA 59.247 50.000 0.00 0.00 0.00 4.69
35 36 2.478031 CGAGTCTCTGTATCAACCACCG 60.478 54.545 0.00 0.00 0.00 4.94
36 37 2.492484 ACGAGTCTCTGTATCAACCACC 59.508 50.000 0.00 0.00 0.00 4.61
37 38 3.427773 GGACGAGTCTCTGTATCAACCAC 60.428 52.174 3.09 0.00 0.00 4.16
38 39 2.753452 GGACGAGTCTCTGTATCAACCA 59.247 50.000 3.09 0.00 0.00 3.67
39 40 2.223294 CGGACGAGTCTCTGTATCAACC 60.223 54.545 3.09 0.00 0.00 3.77
40 41 2.791849 GCGGACGAGTCTCTGTATCAAC 60.792 54.545 3.09 0.00 0.00 3.18
41 42 1.400846 GCGGACGAGTCTCTGTATCAA 59.599 52.381 3.09 0.00 0.00 2.57
42 43 1.015109 GCGGACGAGTCTCTGTATCA 58.985 55.000 3.09 0.00 0.00 2.15
43 44 1.301423 AGCGGACGAGTCTCTGTATC 58.699 55.000 3.09 0.00 0.00 2.24
44 45 2.211806 GTAGCGGACGAGTCTCTGTAT 58.788 52.381 3.09 0.00 0.00 2.29
45 46 1.649664 GTAGCGGACGAGTCTCTGTA 58.350 55.000 3.09 0.00 0.00 2.74
46 47 1.025647 GGTAGCGGACGAGTCTCTGT 61.026 60.000 3.09 0.00 0.00 3.41
47 48 1.722677 GGTAGCGGACGAGTCTCTG 59.277 63.158 3.09 0.00 0.00 3.35
48 49 1.814586 CGGTAGCGGACGAGTCTCT 60.815 63.158 6.39 4.00 0.00 3.10
49 50 1.812922 TCGGTAGCGGACGAGTCTC 60.813 63.158 15.23 0.00 34.67 3.36
50 51 2.267006 TCGGTAGCGGACGAGTCT 59.733 61.111 15.23 0.00 34.67 3.24
78 79 2.032528 TTGTTGGCCGAGCAGAGG 59.967 61.111 0.00 0.00 0.00 3.69
79 80 1.572085 CTGTTGTTGGCCGAGCAGAG 61.572 60.000 11.77 0.00 0.00 3.35
80 81 1.597854 CTGTTGTTGGCCGAGCAGA 60.598 57.895 11.77 0.00 0.00 4.26
81 82 2.949106 CTGTTGTTGGCCGAGCAG 59.051 61.111 0.00 1.31 0.00 4.24
82 83 3.286751 GCTGTTGTTGGCCGAGCA 61.287 61.111 0.00 0.00 0.00 4.26
83 84 4.389576 CGCTGTTGTTGGCCGAGC 62.390 66.667 0.00 0.00 0.00 5.03
84 85 4.389576 GCGCTGTTGTTGGCCGAG 62.390 66.667 0.00 0.00 0.00 4.63
87 88 2.642996 AAAAGGCGCTGTTGTTGGCC 62.643 55.000 7.64 0.00 45.91 5.36
88 89 0.031449 TAAAAGGCGCTGTTGTTGGC 59.969 50.000 7.64 0.00 0.00 4.52
89 90 1.930371 GCTAAAAGGCGCTGTTGTTGG 60.930 52.381 7.64 0.00 0.00 3.77
90 91 1.408422 GCTAAAAGGCGCTGTTGTTG 58.592 50.000 7.64 0.00 0.00 3.33
91 92 0.313987 GGCTAAAAGGCGCTGTTGTT 59.686 50.000 7.64 0.00 0.00 2.83
92 93 0.537371 AGGCTAAAAGGCGCTGTTGT 60.537 50.000 7.64 0.00 46.58 3.32
93 94 0.169009 GAGGCTAAAAGGCGCTGTTG 59.831 55.000 7.64 0.00 46.58 3.33
94 95 0.250727 TGAGGCTAAAAGGCGCTGTT 60.251 50.000 7.64 0.00 46.58 3.16
95 96 0.674895 CTGAGGCTAAAAGGCGCTGT 60.675 55.000 7.64 0.00 46.58 4.40
96 97 0.391661 TCTGAGGCTAAAAGGCGCTG 60.392 55.000 7.64 5.48 46.58 5.18
97 98 0.324943 TTCTGAGGCTAAAAGGCGCT 59.675 50.000 7.64 0.00 46.58 5.92
98 99 0.729690 CTTCTGAGGCTAAAAGGCGC 59.270 55.000 0.00 0.00 46.58 6.53
99 100 0.729690 GCTTCTGAGGCTAAAAGGCG 59.270 55.000 4.32 0.00 46.58 5.52
100 101 1.742268 CTGCTTCTGAGGCTAAAAGGC 59.258 52.381 13.13 0.00 41.73 4.35
101 102 3.064900 ACTGCTTCTGAGGCTAAAAGG 57.935 47.619 13.13 0.03 0.00 3.11
102 103 3.438434 GGAACTGCTTCTGAGGCTAAAAG 59.562 47.826 13.13 4.49 0.00 2.27
103 104 3.181445 TGGAACTGCTTCTGAGGCTAAAA 60.181 43.478 13.13 0.00 0.00 1.52
104 105 2.371841 TGGAACTGCTTCTGAGGCTAAA 59.628 45.455 13.13 0.00 0.00 1.85
105 106 1.977854 TGGAACTGCTTCTGAGGCTAA 59.022 47.619 13.13 0.00 0.00 3.09
106 107 1.276421 GTGGAACTGCTTCTGAGGCTA 59.724 52.381 13.13 0.00 0.00 3.93
107 108 0.036022 GTGGAACTGCTTCTGAGGCT 59.964 55.000 13.13 0.00 0.00 4.58
108 109 2.549332 GTGGAACTGCTTCTGAGGC 58.451 57.895 4.63 4.63 0.00 4.70
120 121 4.738839 GCCCCGTATACTTCTAAGTGGAAC 60.739 50.000 5.62 0.97 40.07 3.62
121 122 3.385755 GCCCCGTATACTTCTAAGTGGAA 59.614 47.826 5.62 0.00 40.07 3.53
122 123 2.961062 GCCCCGTATACTTCTAAGTGGA 59.039 50.000 5.62 0.00 40.07 4.02
123 124 2.963782 AGCCCCGTATACTTCTAAGTGG 59.036 50.000 5.62 0.00 40.07 4.00
124 125 3.383825 ACAGCCCCGTATACTTCTAAGTG 59.616 47.826 5.62 0.00 40.07 3.16
125 126 3.639952 ACAGCCCCGTATACTTCTAAGT 58.360 45.455 0.56 0.39 42.91 2.24
126 127 4.667519 AACAGCCCCGTATACTTCTAAG 57.332 45.455 0.56 0.00 0.00 2.18
127 128 4.383335 CCAAACAGCCCCGTATACTTCTAA 60.383 45.833 0.56 0.00 0.00 2.10
128 129 3.133362 CCAAACAGCCCCGTATACTTCTA 59.867 47.826 0.56 0.00 0.00 2.10
129 130 2.093128 CCAAACAGCCCCGTATACTTCT 60.093 50.000 0.56 0.00 0.00 2.85
130 131 2.093341 TCCAAACAGCCCCGTATACTTC 60.093 50.000 0.56 0.00 0.00 3.01
131 132 1.910671 TCCAAACAGCCCCGTATACTT 59.089 47.619 0.56 0.00 0.00 2.24
132 133 1.575419 TCCAAACAGCCCCGTATACT 58.425 50.000 0.56 0.00 0.00 2.12
133 134 2.632987 ATCCAAACAGCCCCGTATAC 57.367 50.000 0.00 0.00 0.00 1.47
134 135 2.038033 GCTATCCAAACAGCCCCGTATA 59.962 50.000 0.00 0.00 0.00 1.47
135 136 1.202770 GCTATCCAAACAGCCCCGTAT 60.203 52.381 0.00 0.00 0.00 3.06
136 137 0.179468 GCTATCCAAACAGCCCCGTA 59.821 55.000 0.00 0.00 0.00 4.02
137 138 1.077716 GCTATCCAAACAGCCCCGT 60.078 57.895 0.00 0.00 0.00 5.28
138 139 0.394352 AAGCTATCCAAACAGCCCCG 60.394 55.000 0.00 0.00 38.61 5.73
139 140 1.393603 GAAGCTATCCAAACAGCCCC 58.606 55.000 0.00 0.00 38.61 5.80
150 151 7.495279 CAGGCAATAATCTATCAGGAAGCTATC 59.505 40.741 0.00 0.00 0.00 2.08
151 152 7.337167 CAGGCAATAATCTATCAGGAAGCTAT 58.663 38.462 0.00 0.00 0.00 2.97
152 153 6.296087 CCAGGCAATAATCTATCAGGAAGCTA 60.296 42.308 0.00 0.00 0.00 3.32
153 154 5.514484 CCAGGCAATAATCTATCAGGAAGCT 60.514 44.000 0.00 0.00 0.00 3.74
154 155 4.699257 CCAGGCAATAATCTATCAGGAAGC 59.301 45.833 0.00 0.00 0.00 3.86
155 156 4.699257 GCCAGGCAATAATCTATCAGGAAG 59.301 45.833 6.55 0.00 0.00 3.46
156 157 4.507335 GGCCAGGCAATAATCTATCAGGAA 60.507 45.833 15.19 0.00 0.00 3.36
157 158 3.009473 GGCCAGGCAATAATCTATCAGGA 59.991 47.826 15.19 0.00 0.00 3.86
158 159 3.009916 AGGCCAGGCAATAATCTATCAGG 59.990 47.826 15.19 0.00 0.00 3.86
159 160 4.008330 CAGGCCAGGCAATAATCTATCAG 58.992 47.826 15.19 0.00 0.00 2.90
160 161 3.245016 CCAGGCCAGGCAATAATCTATCA 60.245 47.826 15.19 0.00 0.00 2.15
161 162 3.350833 CCAGGCCAGGCAATAATCTATC 58.649 50.000 15.19 0.00 0.00 2.08
162 163 3.446442 CCAGGCCAGGCAATAATCTAT 57.554 47.619 15.19 0.00 0.00 1.98
163 164 2.957402 CCAGGCCAGGCAATAATCTA 57.043 50.000 15.19 0.00 0.00 1.98
164 165 3.835810 CCAGGCCAGGCAATAATCT 57.164 52.632 15.19 0.00 0.00 2.40
182 183 1.153706 GCAACATCCAGGCACATGC 60.154 57.895 0.00 0.00 41.14 4.06
183 184 0.968901 AGGCAACATCCAGGCACATG 60.969 55.000 0.00 0.00 41.41 3.21
184 185 0.968901 CAGGCAACATCCAGGCACAT 60.969 55.000 0.00 0.00 41.41 3.21
185 186 1.604308 CAGGCAACATCCAGGCACA 60.604 57.895 0.00 0.00 41.41 4.57
186 187 2.345760 CCAGGCAACATCCAGGCAC 61.346 63.158 0.00 0.00 41.41 5.01
187 188 2.036098 CCAGGCAACATCCAGGCA 59.964 61.111 0.00 0.00 41.41 4.75
188 189 0.899717 TTTCCAGGCAACATCCAGGC 60.900 55.000 0.00 0.00 41.41 4.85
189 190 1.180029 CTTTCCAGGCAACATCCAGG 58.820 55.000 0.00 0.00 41.41 4.45
190 191 1.542915 CACTTTCCAGGCAACATCCAG 59.457 52.381 0.00 0.00 41.41 3.86
191 192 1.133513 ACACTTTCCAGGCAACATCCA 60.134 47.619 0.00 0.00 41.41 3.41
192 193 1.620822 ACACTTTCCAGGCAACATCC 58.379 50.000 0.00 0.00 41.41 3.51
193 194 3.383761 CAAACACTTTCCAGGCAACATC 58.616 45.455 0.00 0.00 41.41 3.06
194 195 2.102925 CCAAACACTTTCCAGGCAACAT 59.897 45.455 0.00 0.00 41.41 2.71
195 196 1.480137 CCAAACACTTTCCAGGCAACA 59.520 47.619 0.00 0.00 41.41 3.33
196 197 1.480545 ACCAAACACTTTCCAGGCAAC 59.519 47.619 0.00 0.00 0.00 4.17
197 198 1.859302 ACCAAACACTTTCCAGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
198 199 1.480137 CAACCAAACACTTTCCAGGCA 59.520 47.619 0.00 0.00 0.00 4.75
199 200 1.754226 TCAACCAAACACTTTCCAGGC 59.246 47.619 0.00 0.00 0.00 4.85
200 201 3.384467 ACATCAACCAAACACTTTCCAGG 59.616 43.478 0.00 0.00 0.00 4.45
201 202 4.499696 GGACATCAACCAAACACTTTCCAG 60.500 45.833 0.00 0.00 0.00 3.86
202 203 3.383185 GGACATCAACCAAACACTTTCCA 59.617 43.478 0.00 0.00 0.00 3.53
203 204 3.383185 TGGACATCAACCAAACACTTTCC 59.617 43.478 0.00 0.00 34.25 3.13
204 205 4.338118 TCTGGACATCAACCAAACACTTTC 59.662 41.667 0.00 0.00 36.95 2.62
205 206 4.277476 TCTGGACATCAACCAAACACTTT 58.723 39.130 0.00 0.00 36.95 2.66
206 207 3.897239 TCTGGACATCAACCAAACACTT 58.103 40.909 0.00 0.00 36.95 3.16
207 208 3.576078 TCTGGACATCAACCAAACACT 57.424 42.857 0.00 0.00 36.95 3.55
208 209 3.882888 TCTTCTGGACATCAACCAAACAC 59.117 43.478 0.00 0.00 36.95 3.32
209 210 4.163441 TCTTCTGGACATCAACCAAACA 57.837 40.909 0.00 0.00 36.95 2.83
210 211 4.616835 GCATCTTCTGGACATCAACCAAAC 60.617 45.833 0.00 0.00 36.95 2.93
211 212 3.507233 GCATCTTCTGGACATCAACCAAA 59.493 43.478 0.00 0.00 36.95 3.28
212 213 3.084039 GCATCTTCTGGACATCAACCAA 58.916 45.455 0.00 0.00 36.95 3.67
213 214 2.618816 GGCATCTTCTGGACATCAACCA 60.619 50.000 0.00 0.00 35.96 3.67
214 215 2.019984 GGCATCTTCTGGACATCAACC 58.980 52.381 0.00 0.00 0.00 3.77
215 216 2.681848 CAGGCATCTTCTGGACATCAAC 59.318 50.000 0.00 0.00 0.00 3.18
216 217 2.573009 TCAGGCATCTTCTGGACATCAA 59.427 45.455 0.00 0.00 33.36 2.57
217 218 2.169978 CTCAGGCATCTTCTGGACATCA 59.830 50.000 0.00 0.00 33.36 3.07
218 219 2.836262 CTCAGGCATCTTCTGGACATC 58.164 52.381 0.00 0.00 33.36 3.06
219 220 1.134159 GCTCAGGCATCTTCTGGACAT 60.134 52.381 0.00 0.00 38.54 3.06
220 221 0.251354 GCTCAGGCATCTTCTGGACA 59.749 55.000 0.00 0.00 38.54 4.02
221 222 0.540923 AGCTCAGGCATCTTCTGGAC 59.459 55.000 0.00 0.00 41.70 4.02
222 223 2.037901 CTAGCTCAGGCATCTTCTGGA 58.962 52.381 0.00 0.00 41.70 3.86
223 224 1.540797 GCTAGCTCAGGCATCTTCTGG 60.541 57.143 7.70 0.00 41.70 3.86
224 225 1.868469 GCTAGCTCAGGCATCTTCTG 58.132 55.000 7.70 0.00 41.70 3.02
233 234 2.767496 AGGCCAGGCTAGCTCAGG 60.767 66.667 15.72 14.61 0.00 3.86
234 235 2.505006 CAGGCCAGGCTAGCTCAG 59.495 66.667 15.72 4.37 0.00 3.35
235 236 3.085947 CCAGGCCAGGCTAGCTCA 61.086 66.667 15.72 0.00 0.00 4.26
236 237 3.871395 CCCAGGCCAGGCTAGCTC 61.871 72.222 15.72 4.82 0.00 4.09
237 238 4.421554 TCCCAGGCCAGGCTAGCT 62.422 66.667 15.72 0.00 0.00 3.32
238 239 3.871395 CTCCCAGGCCAGGCTAGC 61.871 72.222 12.43 6.04 0.00 3.42
239 240 1.977293 GAACTCCCAGGCCAGGCTAG 61.977 65.000 12.43 10.74 0.00 3.42
240 241 1.995626 GAACTCCCAGGCCAGGCTA 60.996 63.158 12.43 0.00 0.00 3.93
241 242 3.334054 GAACTCCCAGGCCAGGCT 61.334 66.667 12.43 0.00 0.00 4.58
242 243 4.432741 GGAACTCCCAGGCCAGGC 62.433 72.222 9.12 1.26 34.14 4.85
252 253 3.939592 GCTAAACATACAGTGGGAACTCC 59.060 47.826 0.00 0.00 0.00 3.85
253 254 3.939592 GGCTAAACATACAGTGGGAACTC 59.060 47.826 0.00 0.00 0.00 3.01
254 255 3.587506 AGGCTAAACATACAGTGGGAACT 59.412 43.478 0.00 0.00 0.00 3.01
255 256 3.689649 CAGGCTAAACATACAGTGGGAAC 59.310 47.826 0.00 0.00 0.00 3.62
256 257 3.308117 CCAGGCTAAACATACAGTGGGAA 60.308 47.826 0.00 0.00 0.00 3.97
257 258 2.238646 CCAGGCTAAACATACAGTGGGA 59.761 50.000 0.00 0.00 0.00 4.37
258 259 2.643551 CCAGGCTAAACATACAGTGGG 58.356 52.381 0.00 0.00 0.00 4.61
259 260 2.017049 GCCAGGCTAAACATACAGTGG 58.983 52.381 3.29 0.00 0.00 4.00
260 261 2.991250 AGCCAGGCTAAACATACAGTG 58.009 47.619 14.18 0.00 36.99 3.66
261 262 4.837093 TTAGCCAGGCTAAACATACAGT 57.163 40.909 28.84 0.00 46.30 3.55
271 272 3.388024 CACAGAGGTATTTAGCCAGGCTA 59.612 47.826 18.06 18.06 40.44 3.93
272 273 2.171448 CACAGAGGTATTTAGCCAGGCT 59.829 50.000 20.63 20.63 43.41 4.58
273 274 2.170607 TCACAGAGGTATTTAGCCAGGC 59.829 50.000 1.84 1.84 0.00 4.85
274 275 4.141620 ACATCACAGAGGTATTTAGCCAGG 60.142 45.833 0.00 0.00 0.00 4.45
275 276 4.813161 CACATCACAGAGGTATTTAGCCAG 59.187 45.833 0.00 0.00 0.00 4.85
276 277 4.469586 TCACATCACAGAGGTATTTAGCCA 59.530 41.667 0.00 0.00 0.00 4.75
277 278 5.023533 TCACATCACAGAGGTATTTAGCC 57.976 43.478 0.00 0.00 0.00 3.93
278 279 7.095439 GCTAATCACATCACAGAGGTATTTAGC 60.095 40.741 15.50 15.50 38.02 3.09
279 280 7.386299 GGCTAATCACATCACAGAGGTATTTAG 59.614 40.741 0.00 0.00 30.49 1.85
280 281 7.071196 AGGCTAATCACATCACAGAGGTATTTA 59.929 37.037 0.00 0.00 0.00 1.40
281 282 6.058183 GGCTAATCACATCACAGAGGTATTT 58.942 40.000 0.00 0.00 0.00 1.40
282 283 5.367937 AGGCTAATCACATCACAGAGGTATT 59.632 40.000 0.00 0.00 0.00 1.89
283 284 4.904251 AGGCTAATCACATCACAGAGGTAT 59.096 41.667 0.00 0.00 0.00 2.73
284 285 4.100035 CAGGCTAATCACATCACAGAGGTA 59.900 45.833 0.00 0.00 0.00 3.08
285 286 3.110705 AGGCTAATCACATCACAGAGGT 58.889 45.455 0.00 0.00 0.00 3.85
286 287 3.464907 CAGGCTAATCACATCACAGAGG 58.535 50.000 0.00 0.00 0.00 3.69
287 288 3.464907 CCAGGCTAATCACATCACAGAG 58.535 50.000 0.00 0.00 0.00 3.35
288 289 2.420547 GCCAGGCTAATCACATCACAGA 60.421 50.000 3.29 0.00 0.00 3.41
289 290 1.945394 GCCAGGCTAATCACATCACAG 59.055 52.381 3.29 0.00 0.00 3.66
290 291 1.408683 GGCCAGGCTAATCACATCACA 60.409 52.381 12.43 0.00 0.00 3.58
291 292 1.312815 GGCCAGGCTAATCACATCAC 58.687 55.000 12.43 0.00 0.00 3.06
292 293 0.183492 GGGCCAGGCTAATCACATCA 59.817 55.000 12.43 0.00 0.00 3.07
293 294 0.183492 TGGGCCAGGCTAATCACATC 59.817 55.000 12.43 0.00 0.00 3.06
294 295 0.184451 CTGGGCCAGGCTAATCACAT 59.816 55.000 26.34 0.00 0.00 3.21
295 296 1.609239 CTGGGCCAGGCTAATCACA 59.391 57.895 26.34 0.65 0.00 3.58
296 297 1.152881 CCTGGGCCAGGCTAATCAC 60.153 63.158 38.22 0.00 45.13 3.06
297 298 3.334604 CCTGGGCCAGGCTAATCA 58.665 61.111 38.22 4.39 45.13 2.57
305 306 1.193462 TTTTCCAATGCCTGGGCCAG 61.193 55.000 27.04 27.04 46.44 4.85
306 307 1.152161 TTTTCCAATGCCTGGGCCA 60.152 52.632 5.85 5.85 46.44 5.36
307 308 1.598517 CTTTTCCAATGCCTGGGCC 59.401 57.895 9.28 0.00 46.44 5.80
308 309 1.598517 CCTTTTCCAATGCCTGGGC 59.401 57.895 4.43 4.43 46.44 5.36
309 310 0.252193 TCCCTTTTCCAATGCCTGGG 60.252 55.000 0.00 0.00 46.44 4.45
311 312 0.527565 CGTCCCTTTTCCAATGCCTG 59.472 55.000 0.00 0.00 0.00 4.85
312 313 1.250840 GCGTCCCTTTTCCAATGCCT 61.251 55.000 0.00 0.00 0.00 4.75
313 314 1.215382 GCGTCCCTTTTCCAATGCC 59.785 57.895 0.00 0.00 0.00 4.40
314 315 1.215382 GGCGTCCCTTTTCCAATGC 59.785 57.895 0.00 0.00 0.00 3.56
315 316 0.527565 CAGGCGTCCCTTTTCCAATG 59.472 55.000 0.00 0.00 40.33 2.82
316 317 0.611896 CCAGGCGTCCCTTTTCCAAT 60.612 55.000 0.00 0.00 40.33 3.16
317 318 1.228429 CCAGGCGTCCCTTTTCCAA 60.228 57.895 0.00 0.00 40.33 3.53
318 319 2.124507 CTCCAGGCGTCCCTTTTCCA 62.125 60.000 0.00 0.00 40.33 3.53
319 320 1.377333 CTCCAGGCGTCCCTTTTCC 60.377 63.158 0.00 0.00 40.33 3.13
320 321 1.377333 CCTCCAGGCGTCCCTTTTC 60.377 63.158 0.00 0.00 40.33 2.29
321 322 1.208165 ATCCTCCAGGCGTCCCTTTT 61.208 55.000 0.00 0.00 40.33 2.27
322 323 1.616628 ATCCTCCAGGCGTCCCTTT 60.617 57.895 0.00 0.00 40.33 3.11
323 324 2.041265 ATCCTCCAGGCGTCCCTT 59.959 61.111 0.00 0.00 40.33 3.95
324 325 2.765807 CATCCTCCAGGCGTCCCT 60.766 66.667 0.00 0.00 44.25 4.20
325 326 4.554036 GCATCCTCCAGGCGTCCC 62.554 72.222 0.00 0.00 34.44 4.46
326 327 4.554036 GGCATCCTCCAGGCGTCC 62.554 72.222 0.00 0.00 34.44 4.79
327 328 3.474570 AGGCATCCTCCAGGCGTC 61.475 66.667 0.00 0.00 35.18 5.19
328 329 3.790437 CAGGCATCCTCCAGGCGT 61.790 66.667 0.00 0.00 35.18 5.68
329 330 4.559063 CCAGGCATCCTCCAGGCG 62.559 72.222 0.00 0.00 35.18 5.52
330 331 3.092511 TCCAGGCATCCTCCAGGC 61.093 66.667 0.00 0.00 33.22 4.85
331 332 2.450320 CCTCCAGGCATCCTCCAGG 61.450 68.421 0.00 0.00 34.38 4.45
332 333 2.450320 CCCTCCAGGCATCCTCCAG 61.450 68.421 0.00 0.00 0.00 3.86
333 334 1.897037 TACCCTCCAGGCATCCTCCA 61.897 60.000 0.00 0.00 40.58 3.86
334 335 1.074471 TACCCTCCAGGCATCCTCC 60.074 63.158 0.00 0.00 40.58 4.30
335 336 1.749334 CGTACCCTCCAGGCATCCTC 61.749 65.000 0.00 0.00 40.58 3.71
336 337 1.762460 CGTACCCTCCAGGCATCCT 60.762 63.158 0.00 0.00 40.58 3.24
337 338 1.760875 TCGTACCCTCCAGGCATCC 60.761 63.158 0.00 0.00 40.58 3.51
338 339 1.327690 TGTCGTACCCTCCAGGCATC 61.328 60.000 0.00 0.00 40.58 3.91
339 340 1.305802 TGTCGTACCCTCCAGGCAT 60.306 57.895 0.00 0.00 40.58 4.40
340 341 1.982395 CTGTCGTACCCTCCAGGCA 60.982 63.158 0.00 0.00 40.58 4.75
341 342 2.893398 CTGTCGTACCCTCCAGGC 59.107 66.667 0.00 0.00 40.58 4.85
342 343 1.949847 CTGCTGTCGTACCCTCCAGG 61.950 65.000 0.00 0.00 43.78 4.45
343 344 1.513158 CTGCTGTCGTACCCTCCAG 59.487 63.158 0.00 0.00 0.00 3.86
344 345 2.646175 GCTGCTGTCGTACCCTCCA 61.646 63.158 0.00 0.00 0.00 3.86
345 346 2.184579 GCTGCTGTCGTACCCTCC 59.815 66.667 0.00 0.00 0.00 4.30
346 347 2.184579 GGCTGCTGTCGTACCCTC 59.815 66.667 0.00 0.00 0.00 4.30
347 348 2.283966 AGGCTGCTGTCGTACCCT 60.284 61.111 0.00 0.00 0.00 4.34
348 349 2.125512 CAGGCTGCTGTCGTACCC 60.126 66.667 0.00 0.00 0.00 3.69
349 350 2.125512 CCAGGCTGCTGTCGTACC 60.126 66.667 9.56 0.00 0.00 3.34
350 351 0.320421 TTTCCAGGCTGCTGTCGTAC 60.320 55.000 9.56 0.00 0.00 3.67
351 352 0.613260 ATTTCCAGGCTGCTGTCGTA 59.387 50.000 9.56 0.00 0.00 3.43
352 353 0.613260 TATTTCCAGGCTGCTGTCGT 59.387 50.000 9.56 0.00 0.00 4.34
353 354 1.009829 GTATTTCCAGGCTGCTGTCG 58.990 55.000 9.56 0.00 0.00 4.35
354 355 2.409948 AGTATTTCCAGGCTGCTGTC 57.590 50.000 9.56 0.00 0.00 3.51
355 356 4.510167 ATTAGTATTTCCAGGCTGCTGT 57.490 40.909 9.56 0.00 0.00 4.40
356 357 6.543831 ACTTTATTAGTATTTCCAGGCTGCTG 59.456 38.462 9.56 0.00 34.56 4.41
357 358 6.663734 ACTTTATTAGTATTTCCAGGCTGCT 58.336 36.000 9.56 1.89 34.56 4.24
358 359 6.944234 ACTTTATTAGTATTTCCAGGCTGC 57.056 37.500 9.56 0.00 34.56 5.25
374 375 9.342308 ACAGTATGCATGTGCTAATACTTTATT 57.658 29.630 10.16 0.64 42.53 1.40
375 376 8.908786 ACAGTATGCATGTGCTAATACTTTAT 57.091 30.769 10.16 3.27 42.53 1.40
376 377 8.611757 CAACAGTATGCATGTGCTAATACTTTA 58.388 33.333 10.16 0.00 42.53 1.85
377 378 7.336679 TCAACAGTATGCATGTGCTAATACTTT 59.663 33.333 10.16 6.73 42.53 2.66
378 379 6.823182 TCAACAGTATGCATGTGCTAATACTT 59.177 34.615 10.16 5.47 42.53 2.24
379 380 6.258727 GTCAACAGTATGCATGTGCTAATACT 59.741 38.462 10.16 10.49 42.53 2.12
380 381 6.258727 AGTCAACAGTATGCATGTGCTAATAC 59.741 38.462 10.16 6.90 42.53 1.89
381 382 6.348498 AGTCAACAGTATGCATGTGCTAATA 58.652 36.000 10.16 0.00 42.53 0.98
382 383 5.188434 AGTCAACAGTATGCATGTGCTAAT 58.812 37.500 10.16 0.00 42.53 1.73
383 384 4.578871 AGTCAACAGTATGCATGTGCTAA 58.421 39.130 10.16 0.00 42.53 3.09
384 385 4.206477 AGTCAACAGTATGCATGTGCTA 57.794 40.909 10.16 0.00 42.53 3.49
385 386 3.063510 AGTCAACAGTATGCATGTGCT 57.936 42.857 10.16 1.78 42.53 4.40
386 387 3.189080 TCAAGTCAACAGTATGCATGTGC 59.811 43.478 10.16 0.00 42.53 4.57
387 388 5.329493 CATCAAGTCAACAGTATGCATGTG 58.671 41.667 10.16 9.38 42.53 3.21
388 389 4.142534 GCATCAAGTCAACAGTATGCATGT 60.143 41.667 10.16 0.00 42.53 3.21
389 390 4.095932 AGCATCAAGTCAACAGTATGCATG 59.904 41.667 10.16 0.00 42.53 4.06
390 391 4.267536 AGCATCAAGTCAACAGTATGCAT 58.732 39.130 3.79 3.79 42.53 3.96
391 392 3.678289 AGCATCAAGTCAACAGTATGCA 58.322 40.909 7.73 0.00 42.53 3.96
392 393 5.998454 ATAGCATCAAGTCAACAGTATGC 57.002 39.130 0.00 0.00 42.53 3.14
393 394 6.986231 TGGTATAGCATCAAGTCAACAGTATG 59.014 38.462 0.00 0.00 46.00 2.39
394 395 7.124573 TGGTATAGCATCAAGTCAACAGTAT 57.875 36.000 0.00 0.00 0.00 2.12
395 396 6.406961 CCTGGTATAGCATCAAGTCAACAGTA 60.407 42.308 4.84 0.00 0.00 2.74
396 397 5.420725 TGGTATAGCATCAAGTCAACAGT 57.579 39.130 0.00 0.00 0.00 3.55
397 398 4.813161 CCTGGTATAGCATCAAGTCAACAG 59.187 45.833 4.84 0.00 0.00 3.16
398 399 4.769688 CCTGGTATAGCATCAAGTCAACA 58.230 43.478 4.84 0.00 0.00 3.33
399 400 3.561725 GCCTGGTATAGCATCAAGTCAAC 59.438 47.826 4.84 0.00 0.00 3.18
400 401 3.433598 GGCCTGGTATAGCATCAAGTCAA 60.434 47.826 4.84 0.00 0.00 3.18
401 402 2.104792 GGCCTGGTATAGCATCAAGTCA 59.895 50.000 4.84 0.00 0.00 3.41
402 403 2.104792 TGGCCTGGTATAGCATCAAGTC 59.895 50.000 3.32 0.00 0.00 3.01
403 404 2.105477 CTGGCCTGGTATAGCATCAAGT 59.895 50.000 3.32 0.00 0.00 3.16
404 405 2.551721 CCTGGCCTGGTATAGCATCAAG 60.552 54.545 20.28 3.78 0.00 3.02
405 406 1.421268 CCTGGCCTGGTATAGCATCAA 59.579 52.381 20.28 0.00 0.00 2.57
406 407 1.059098 CCTGGCCTGGTATAGCATCA 58.941 55.000 20.28 4.19 0.00 3.07
407 408 0.322008 GCCTGGCCTGGTATAGCATC 60.322 60.000 27.68 6.71 0.00 3.91
408 409 0.769776 AGCCTGGCCTGGTATAGCAT 60.770 55.000 27.68 5.05 0.00 3.79
409 410 0.105194 TAGCCTGGCCTGGTATAGCA 60.105 55.000 27.68 4.27 0.00 3.49
410 411 0.321996 GTAGCCTGGCCTGGTATAGC 59.678 60.000 27.68 14.14 0.00 2.97
411 412 0.603569 CGTAGCCTGGCCTGGTATAG 59.396 60.000 27.68 14.49 0.00 1.31
412 413 0.186630 TCGTAGCCTGGCCTGGTATA 59.813 55.000 27.68 18.40 0.00 1.47
413 414 0.689745 TTCGTAGCCTGGCCTGGTAT 60.690 55.000 27.68 19.35 0.00 2.73
414 415 1.305465 TTCGTAGCCTGGCCTGGTA 60.305 57.895 27.68 16.39 0.00 3.25
415 416 2.606519 TTCGTAGCCTGGCCTGGT 60.607 61.111 27.68 17.32 0.00 4.00
416 417 2.125106 GTTCGTAGCCTGGCCTGG 60.125 66.667 23.89 23.89 0.00 4.45
417 418 0.605319 TTTGTTCGTAGCCTGGCCTG 60.605 55.000 16.57 2.54 0.00 4.85
418 419 0.109723 TTTTGTTCGTAGCCTGGCCT 59.890 50.000 16.57 5.44 0.00 5.19
419 420 0.240145 GTTTTGTTCGTAGCCTGGCC 59.760 55.000 16.57 0.00 0.00 5.36
420 421 0.948678 TGTTTTGTTCGTAGCCTGGC 59.051 50.000 11.65 11.65 0.00 4.85
421 422 2.218603 AGTGTTTTGTTCGTAGCCTGG 58.781 47.619 0.00 0.00 0.00 4.45
422 423 2.223377 GGAGTGTTTTGTTCGTAGCCTG 59.777 50.000 0.00 0.00 0.00 4.85
423 424 2.490991 GGAGTGTTTTGTTCGTAGCCT 58.509 47.619 0.00 0.00 0.00 4.58
424 425 1.534163 GGGAGTGTTTTGTTCGTAGCC 59.466 52.381 0.00 0.00 0.00 3.93
425 426 2.215196 TGGGAGTGTTTTGTTCGTAGC 58.785 47.619 0.00 0.00 0.00 3.58
426 427 4.062293 TGATGGGAGTGTTTTGTTCGTAG 58.938 43.478 0.00 0.00 0.00 3.51
427 428 4.062293 CTGATGGGAGTGTTTTGTTCGTA 58.938 43.478 0.00 0.00 0.00 3.43
428 429 2.878406 CTGATGGGAGTGTTTTGTTCGT 59.122 45.455 0.00 0.00 0.00 3.85
429 430 3.058914 GTCTGATGGGAGTGTTTTGTTCG 60.059 47.826 0.00 0.00 0.00 3.95
430 431 4.137543 AGTCTGATGGGAGTGTTTTGTTC 58.862 43.478 0.00 0.00 0.00 3.18
431 432 4.137543 GAGTCTGATGGGAGTGTTTTGTT 58.862 43.478 0.00 0.00 0.00 2.83
432 433 3.136443 TGAGTCTGATGGGAGTGTTTTGT 59.864 43.478 0.00 0.00 0.00 2.83
433 434 3.743521 TGAGTCTGATGGGAGTGTTTTG 58.256 45.455 0.00 0.00 0.00 2.44
434 435 4.392940 CTTGAGTCTGATGGGAGTGTTTT 58.607 43.478 0.00 0.00 0.00 2.43
435 436 3.808618 GCTTGAGTCTGATGGGAGTGTTT 60.809 47.826 0.00 0.00 0.00 2.83
436 437 2.289945 GCTTGAGTCTGATGGGAGTGTT 60.290 50.000 0.00 0.00 0.00 3.32
437 438 1.277557 GCTTGAGTCTGATGGGAGTGT 59.722 52.381 0.00 0.00 0.00 3.55
438 439 1.406614 GGCTTGAGTCTGATGGGAGTG 60.407 57.143 0.00 0.00 0.00 3.51
439 440 0.908198 GGCTTGAGTCTGATGGGAGT 59.092 55.000 0.00 0.00 0.00 3.85
440 441 1.202330 AGGCTTGAGTCTGATGGGAG 58.798 55.000 0.00 0.00 0.00 4.30
441 442 3.406442 AGGCTTGAGTCTGATGGGA 57.594 52.632 0.00 0.00 0.00 4.37
447 448 1.376942 CTGGCCAGGCTTGAGTCTG 60.377 63.158 26.14 5.64 46.72 3.51
448 449 2.600729 CCTGGCCAGGCTTGAGTCT 61.601 63.158 38.39 0.00 42.44 3.24
449 450 2.045536 CCTGGCCAGGCTTGAGTC 60.046 66.667 38.39 0.00 42.44 3.36
469 470 5.257082 AGCCTGAAACAACATACGTTTTT 57.743 34.783 0.00 0.00 36.72 1.94
470 471 4.553938 CGAGCCTGAAACAACATACGTTTT 60.554 41.667 0.00 0.00 36.72 2.43
471 472 3.059188 CGAGCCTGAAACAACATACGTTT 60.059 43.478 0.00 0.00 39.23 3.60
472 473 2.478894 CGAGCCTGAAACAACATACGTT 59.521 45.455 0.00 0.00 35.01 3.99
473 474 2.066262 CGAGCCTGAAACAACATACGT 58.934 47.619 0.00 0.00 0.00 3.57
474 475 1.393539 CCGAGCCTGAAACAACATACG 59.606 52.381 0.00 0.00 0.00 3.06
475 476 2.415512 GACCGAGCCTGAAACAACATAC 59.584 50.000 0.00 0.00 0.00 2.39
476 477 2.614481 GGACCGAGCCTGAAACAACATA 60.614 50.000 0.00 0.00 0.00 2.29
477 478 1.523758 GACCGAGCCTGAAACAACAT 58.476 50.000 0.00 0.00 0.00 2.71
478 479 0.534203 GGACCGAGCCTGAAACAACA 60.534 55.000 0.00 0.00 0.00 3.33
479 480 0.534203 TGGACCGAGCCTGAAACAAC 60.534 55.000 0.00 0.00 0.00 3.32
480 481 0.250295 CTGGACCGAGCCTGAAACAA 60.250 55.000 0.00 0.00 0.00 2.83
481 482 1.371183 CTGGACCGAGCCTGAAACA 59.629 57.895 0.00 0.00 0.00 2.83
482 483 1.376037 CCTGGACCGAGCCTGAAAC 60.376 63.158 0.00 0.00 0.00 2.78
483 484 3.068881 CCTGGACCGAGCCTGAAA 58.931 61.111 0.00 0.00 0.00 2.69
484 485 3.706373 GCCTGGACCGAGCCTGAA 61.706 66.667 0.00 0.00 0.00 3.02
503 504 4.025401 GTGCCTGCGACAAACCGG 62.025 66.667 0.00 0.00 0.00 5.28
504 505 2.715864 CTTGTGCCTGCGACAAACCG 62.716 60.000 0.00 0.00 33.01 4.44
505 506 1.008538 CTTGTGCCTGCGACAAACC 60.009 57.895 0.00 0.00 33.01 3.27
506 507 0.380378 TTCTTGTGCCTGCGACAAAC 59.620 50.000 0.00 0.00 33.01 2.93
507 508 1.001487 CATTCTTGTGCCTGCGACAAA 60.001 47.619 0.00 0.00 33.01 2.83
508 509 0.592637 CATTCTTGTGCCTGCGACAA 59.407 50.000 0.00 6.86 0.00 3.18
509 510 0.250252 TCATTCTTGTGCCTGCGACA 60.250 50.000 0.00 0.00 0.00 4.35
510 511 0.445436 CTCATTCTTGTGCCTGCGAC 59.555 55.000 0.00 0.00 0.00 5.19
511 512 0.674581 CCTCATTCTTGTGCCTGCGA 60.675 55.000 0.00 0.00 0.00 5.10
512 513 0.674581 TCCTCATTCTTGTGCCTGCG 60.675 55.000 0.00 0.00 0.00 5.18
513 514 0.807496 GTCCTCATTCTTGTGCCTGC 59.193 55.000 0.00 0.00 0.00 4.85
514 515 1.808945 GTGTCCTCATTCTTGTGCCTG 59.191 52.381 0.00 0.00 0.00 4.85
515 516 1.271597 GGTGTCCTCATTCTTGTGCCT 60.272 52.381 0.00 0.00 0.00 4.75
516 517 1.168714 GGTGTCCTCATTCTTGTGCC 58.831 55.000 0.00 0.00 0.00 5.01
517 518 1.896220 TGGTGTCCTCATTCTTGTGC 58.104 50.000 0.00 0.00 0.00 4.57
518 519 2.554032 GGTTGGTGTCCTCATTCTTGTG 59.446 50.000 0.00 0.00 0.00 3.33
519 520 2.174639 TGGTTGGTGTCCTCATTCTTGT 59.825 45.455 0.00 0.00 0.00 3.16
520 521 2.862541 TGGTTGGTGTCCTCATTCTTG 58.137 47.619 0.00 0.00 0.00 3.02
521 522 3.593442 TTGGTTGGTGTCCTCATTCTT 57.407 42.857 0.00 0.00 0.00 2.52
522 523 3.117512 AGTTTGGTTGGTGTCCTCATTCT 60.118 43.478 0.00 0.00 0.00 2.40
523 524 3.004734 CAGTTTGGTTGGTGTCCTCATTC 59.995 47.826 0.00 0.00 0.00 2.67
524 525 2.958355 CAGTTTGGTTGGTGTCCTCATT 59.042 45.455 0.00 0.00 0.00 2.57
525 526 2.174639 TCAGTTTGGTTGGTGTCCTCAT 59.825 45.455 0.00 0.00 0.00 2.90
526 527 1.562008 TCAGTTTGGTTGGTGTCCTCA 59.438 47.619 0.00 0.00 0.00 3.86
527 528 1.947456 GTCAGTTTGGTTGGTGTCCTC 59.053 52.381 0.00 0.00 0.00 3.71
528 529 1.409661 GGTCAGTTTGGTTGGTGTCCT 60.410 52.381 0.00 0.00 0.00 3.85
529 530 1.029681 GGTCAGTTTGGTTGGTGTCC 58.970 55.000 0.00 0.00 0.00 4.02
530 531 1.029681 GGGTCAGTTTGGTTGGTGTC 58.970 55.000 0.00 0.00 0.00 3.67
531 532 0.629058 AGGGTCAGTTTGGTTGGTGT 59.371 50.000 0.00 0.00 0.00 4.16
532 533 2.158667 AGTAGGGTCAGTTTGGTTGGTG 60.159 50.000 0.00 0.00 0.00 4.17
533 534 2.132686 AGTAGGGTCAGTTTGGTTGGT 58.867 47.619 0.00 0.00 0.00 3.67
534 535 2.951229 AGTAGGGTCAGTTTGGTTGG 57.049 50.000 0.00 0.00 0.00 3.77
535 536 3.146847 GGAAGTAGGGTCAGTTTGGTTG 58.853 50.000 0.00 0.00 0.00 3.77
536 537 2.224450 CGGAAGTAGGGTCAGTTTGGTT 60.224 50.000 0.00 0.00 0.00 3.67
537 538 1.346722 CGGAAGTAGGGTCAGTTTGGT 59.653 52.381 0.00 0.00 0.00 3.67
538 539 1.346722 ACGGAAGTAGGGTCAGTTTGG 59.653 52.381 0.00 0.00 46.88 3.28
539 540 2.833631 ACGGAAGTAGGGTCAGTTTG 57.166 50.000 0.00 0.00 46.88 2.93
552 553 2.504244 GTCACGAGCGGACGGAAG 60.504 66.667 0.00 0.00 37.61 3.46
593 594 0.596600 GTCGCTGTCGAGTCAACCAA 60.597 55.000 0.00 0.00 46.46 3.67
594 595 1.007734 GTCGCTGTCGAGTCAACCA 60.008 57.895 0.00 0.00 46.46 3.67
628 629 1.002134 AGTGGGATTTGGTCGGCAG 60.002 57.895 0.00 0.00 0.00 4.85
670 671 1.550524 CTGGAGGAAATCAGACACGGA 59.449 52.381 0.00 0.00 33.11 4.69
688 689 5.472137 GGATCTCACTAGCTAGTAGGAACTG 59.528 48.000 25.63 11.97 41.52 3.16
696 697 4.042435 GGTCTAGGGATCTCACTAGCTAGT 59.958 50.000 20.95 20.95 46.83 2.57
728 729 0.187606 TAGGAAGGGGCTCGATGCTA 59.812 55.000 6.78 0.00 42.39 3.49
773 774 6.577103 TCACTTATTCTGGATCTTGCTGTAG 58.423 40.000 0.00 0.00 0.00 2.74
774 775 6.381133 TCTCACTTATTCTGGATCTTGCTGTA 59.619 38.462 0.00 0.00 0.00 2.74
775 776 5.188555 TCTCACTTATTCTGGATCTTGCTGT 59.811 40.000 0.00 0.00 0.00 4.40
776 777 5.523188 GTCTCACTTATTCTGGATCTTGCTG 59.477 44.000 0.00 0.00 0.00 4.41
777 778 5.188555 TGTCTCACTTATTCTGGATCTTGCT 59.811 40.000 0.00 0.00 0.00 3.91
778 779 5.423015 TGTCTCACTTATTCTGGATCTTGC 58.577 41.667 0.00 0.00 0.00 4.01
819 820 1.570979 AGGATTCAGGTTGGGGATTCC 59.429 52.381 0.00 0.00 35.03 3.01
939 940 2.875933 GTGTCTACTGATAGCTCGCTCT 59.124 50.000 0.00 0.00 0.00 4.09
940 941 2.031508 GGTGTCTACTGATAGCTCGCTC 60.032 54.545 0.00 0.00 0.00 5.03
951 952 1.154016 CGTGGCGAGGTGTCTACTG 60.154 63.158 0.00 0.00 0.00 2.74
964 965 0.389757 GTTCTCCTATCTCCCGTGGC 59.610 60.000 0.00 0.00 0.00 5.01
967 968 3.673543 AAGAGTTCTCCTATCTCCCGT 57.326 47.619 0.00 0.00 0.00 5.28
968 969 3.319689 GGAAAGAGTTCTCCTATCTCCCG 59.680 52.174 0.00 0.00 33.92 5.14
997 998 2.203451 CAGCATCCCCTCCATGCC 60.203 66.667 1.04 0.00 46.76 4.40
1017 1018 3.149196 TGCCTCTGACAACTTCAAATCC 58.851 45.455 0.00 0.00 32.21 3.01
1059 1060 4.606071 CAGACCTGCCTTCTTCCG 57.394 61.111 0.00 0.00 0.00 4.30
1072 1073 2.289072 TGCTTACAGTTGAGGAGCAGAC 60.289 50.000 0.00 0.00 38.33 3.51
1102 1103 6.868622 TCTCTGAGAAAATCTTACCTACAGC 58.131 40.000 4.57 0.00 0.00 4.40
1105 1106 6.277605 GCCTCTCTGAGAAAATCTTACCTAC 58.722 44.000 8.95 0.00 0.00 3.18
1113 1114 2.287769 GCTGGCCTCTCTGAGAAAATC 58.712 52.381 8.95 0.24 0.00 2.17
1139 1140 5.182001 CCTAATGTTCTTCCCACAAACTCTG 59.818 44.000 0.00 0.00 0.00 3.35
1217 1218 6.007703 TCATCAGGAAAGGTAAACGGAAAAT 58.992 36.000 0.00 0.00 0.00 1.82
1223 1224 4.822026 AGTCTCATCAGGAAAGGTAAACG 58.178 43.478 0.00 0.00 0.00 3.60
1305 1306 6.173339 TGTTTTACTGGCCACAAATTTTTCA 58.827 32.000 0.00 0.00 0.00 2.69
1358 1359 4.597075 TGCCATAAGCTCTGACCCATATAA 59.403 41.667 0.00 0.00 44.23 0.98
1388 1389 3.619733 CGTTTCTGAACTCATCATCCCCA 60.620 47.826 0.00 0.00 37.44 4.96
1462 1463 2.398554 CCATTGCTGTTCCGTCCCG 61.399 63.158 0.00 0.00 0.00 5.14
1476 1477 4.870636 TGATTCTCATAAACTGGCCCATT 58.129 39.130 0.00 0.00 0.00 3.16
1502 1503 3.074412 GGCACTGTAATATCCATTCGGG 58.926 50.000 0.00 0.00 38.37 5.14
1503 1504 3.738982 TGGCACTGTAATATCCATTCGG 58.261 45.455 0.00 0.00 0.00 4.30
1519 1520 6.199937 AGTGATGAATCTTGTTATTGGCAC 57.800 37.500 0.00 0.00 0.00 5.01
1641 1642 8.435187 TCAGGCAGATACTCATATTTGAAATCT 58.565 33.333 0.00 5.40 36.10 2.40
1715 1716 2.892852 CCCTCTCTTCTGGCTCTAGATG 59.107 54.545 0.00 0.00 0.00 2.90
1765 1766 8.536175 ACTAGAGCCTCCTTTATAGATAATTGC 58.464 37.037 0.00 0.00 0.00 3.56
1855 1856 0.331278 CTTCCATGCTTACCACCCCA 59.669 55.000 0.00 0.00 0.00 4.96
1891 1892 1.200020 GCCCCATTGAGTGTTCTTTCG 59.800 52.381 0.00 0.00 0.00 3.46
1925 1926 2.625639 TCTCCTCCTCTTTCCTTGCTT 58.374 47.619 0.00 0.00 0.00 3.91
2020 2021 9.933723 CAAATCTGGAGTTTTTGATTTATCCTT 57.066 29.630 0.00 0.00 37.12 3.36
2039 2040 9.748708 TGTTTTCTATTCCTTCAAACAAATCTG 57.251 29.630 0.00 0.00 35.06 2.90
2116 2117 8.475331 TCGTGTATCAAATTTTCTTCTCCTAC 57.525 34.615 0.00 0.00 0.00 3.18
2463 2464 3.776347 TTTTGGTTCGCCGGGCTGA 62.776 57.895 18.34 13.13 41.18 4.26
2778 2781 4.119862 CCATATATGCCCGTAAATCTCCG 58.880 47.826 7.24 0.00 0.00 4.63
3269 3276 4.320057 GCAGTAGACCATGCATTGCTAATC 60.320 45.833 10.49 2.81 42.11 1.75
3405 3416 2.165437 CTCCTCACCTGTTCTAGCTCAC 59.835 54.545 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.