Multiple sequence alignment - TraesCS6B01G238600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G238600 chr6B 100.000 3407 0 0 1 3407 415728956 415732362 0.000000e+00 6292.0
1 TraesCS6B01G238600 chr6A 91.499 2788 128 51 1 2738 380109286 380112014 0.000000e+00 3735.0
2 TraesCS6B01G238600 chr6A 100.000 172 0 0 3091 3262 582491078 582491249 5.490000e-83 318.0
3 TraesCS6B01G238600 chr6A 94.040 151 7 2 3257 3407 380112206 380112354 9.510000e-56 228.0
4 TraesCS6B01G238600 chr6A 93.836 146 9 0 2946 3091 380112056 380112201 1.590000e-53 220.0
5 TraesCS6B01G238600 chr6D 96.899 2096 37 7 669 2738 267200206 267202299 0.000000e+00 3485.0
6 TraesCS6B01G238600 chr6D 87.690 593 49 7 1 571 267199479 267200069 0.000000e+00 669.0
7 TraesCS6B01G238600 chr6D 93.377 151 6 2 3257 3407 267202480 267202626 1.590000e-53 220.0
8 TraesCS6B01G238600 chr6D 95.604 91 4 0 2946 3036 267202341 267202431 2.740000e-31 147.0
9 TraesCS6B01G238600 chr6D 100.000 37 0 0 556 592 267200090 267200126 6.100000e-08 69.4
10 TraesCS6B01G238600 chrUn 100.000 173 0 0 3089 3261 48495355 48495527 1.530000e-83 320.0
11 TraesCS6B01G238600 chrUn 100.000 173 0 0 3089 3261 235110678 235110850 1.530000e-83 320.0
12 TraesCS6B01G238600 chrUn 100.000 173 0 0 3089 3261 386426341 386426513 1.530000e-83 320.0
13 TraesCS6B01G238600 chrUn 97.778 180 4 0 3078 3257 75470869 75470690 9.180000e-81 311.0
14 TraesCS6B01G238600 chr5A 100.000 173 0 0 3091 3263 393879685 393879857 1.530000e-83 320.0
15 TraesCS6B01G238600 chr7B 98.343 181 1 2 3078 3258 571570575 571570753 1.970000e-82 316.0
16 TraesCS6B01G238600 chr3D 97.826 184 2 2 3089 3272 422475518 422475699 1.970000e-82 316.0
17 TraesCS6B01G238600 chr7A 98.864 176 1 1 3087 3262 639786532 639786706 2.550000e-81 313.0
18 TraesCS6B01G238600 chr4D 91.954 174 12 2 2777 2949 34661517 34661689 3.400000e-60 243.0
19 TraesCS6B01G238600 chr1D 91.429 175 13 2 2788 2960 435937501 435937675 4.390000e-59 239.0
20 TraesCS6B01G238600 chr5D 92.262 168 10 3 2787 2953 528616625 528616790 5.680000e-58 235.0
21 TraesCS6B01G238600 chr5D 94.805 77 4 0 1205 1281 552784603 552784527 1.660000e-23 121.0
22 TraesCS6B01G238600 chr3B 92.683 164 10 2 2787 2948 201028506 201028669 5.680000e-58 235.0
23 TraesCS6B01G238600 chr1B 91.011 178 10 3 2778 2949 515918417 515918594 5.680000e-58 235.0
24 TraesCS6B01G238600 chr2D 91.765 170 11 3 2788 2955 296364049 296364217 2.040000e-57 233.0
25 TraesCS6B01G238600 chr2B 91.765 170 11 3 2788 2955 366017679 366017511 2.040000e-57 233.0
26 TraesCS6B01G238600 chr3A 90.805 174 15 1 2788 2960 585297981 585298154 7.350000e-57 231.0
27 TraesCS6B01G238600 chr1A 90.805 174 15 1 2787 2959 216420118 216420291 7.350000e-57 231.0
28 TraesCS6B01G238600 chr5B 94.805 77 4 0 1205 1281 697679891 697679967 1.660000e-23 121.0
29 TraesCS6B01G238600 chr5B 92.208 77 6 0 1205 1281 697778088 697778164 3.590000e-20 110.0
30 TraesCS6B01G238600 chr4A 93.506 77 5 0 1205 1281 615212962 615213038 7.730000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G238600 chr6B 415728956 415732362 3406 False 6292.000000 6292 100.000 1 3407 1 chr6B.!!$F1 3406
1 TraesCS6B01G238600 chr6A 380109286 380112354 3068 False 1394.333333 3735 93.125 1 3407 3 chr6A.!!$F2 3406
2 TraesCS6B01G238600 chr6D 267199479 267202626 3147 False 918.080000 3485 94.714 1 3407 5 chr6D.!!$F1 3406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 322 0.534203 TGGTTTGCCGGTTCAGTCTC 60.534 55.0 1.90 0.0 37.67 3.36 F
306 325 0.756294 TTTGCCGGTTCAGTCTCTCA 59.244 50.0 1.90 0.0 0.00 3.27 F
1860 2007 0.035317 TGCTCGCTGTTGAGGATGTT 59.965 50.0 2.16 0.0 36.47 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1809 2.288666 GGCACATTGTCACCATCGTAT 58.711 47.619 1.31 0.0 0.00 3.06 R
2280 2427 2.467880 ACCATCTTGATACGGTCACCT 58.532 47.619 0.00 0.0 36.32 4.00 R
3155 3305 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.0 40.08 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.113860 TACATTTGCCTCCAGTGAGC 57.886 50.000 0.00 0.00 37.29 4.26
110 111 2.229784 CCTCTTGTGCCCAAAGAATGTC 59.770 50.000 0.00 0.00 0.00 3.06
172 173 4.280819 TGAAACCAATCCATCCAGATTCC 58.719 43.478 0.00 0.00 34.19 3.01
189 190 8.556589 TCCAGATTCCAGTCCTAAATTTATCAA 58.443 33.333 0.00 0.00 0.00 2.57
292 311 3.565307 TCTATCAATCCCATGGTTTGCC 58.435 45.455 11.73 0.00 33.73 4.52
297 316 0.970427 ATCCCATGGTTTGCCGGTTC 60.970 55.000 11.73 0.00 37.67 3.62
298 317 1.905843 CCCATGGTTTGCCGGTTCA 60.906 57.895 11.73 0.00 37.67 3.18
303 322 0.534203 TGGTTTGCCGGTTCAGTCTC 60.534 55.000 1.90 0.00 37.67 3.36
306 325 0.756294 TTTGCCGGTTCAGTCTCTCA 59.244 50.000 1.90 0.00 0.00 3.27
316 335 5.456265 GGTTCAGTCTCTCAAAAATGCTTC 58.544 41.667 0.00 0.00 0.00 3.86
388 408 6.916360 AAATGTCCATGTTGGTGTAAAGAT 57.084 33.333 0.00 0.00 39.03 2.40
389 409 9.693739 ATAAATGTCCATGTTGGTGTAAAGATA 57.306 29.630 0.00 0.00 39.03 1.98
421 441 9.909644 ATAAATGTCTGTGTCTATACCGTATTC 57.090 33.333 0.00 0.00 0.00 1.75
425 445 2.950975 TGTGTCTATACCGTATTCCGCA 59.049 45.455 0.00 0.00 34.38 5.69
437 457 3.736252 CGTATTCCGCAAGACTAATCCTG 59.264 47.826 0.00 0.00 43.02 3.86
445 465 2.993899 CAAGACTAATCCTGCGAACGTT 59.006 45.455 0.00 0.00 0.00 3.99
459 479 3.063045 GCGAACGTTAAAGATACCTTGGG 59.937 47.826 0.00 0.00 31.91 4.12
494 518 3.945346 TGAAATACCATGGTGCGTAAGT 58.055 40.909 28.17 2.75 41.68 2.24
503 527 1.164041 GGTGCGTAAGTGCCTGTGTT 61.164 55.000 0.00 0.00 41.68 3.32
523 547 6.418226 TGTGTTTGTACCATAATTCGCAAAAC 59.582 34.615 0.00 0.00 0.00 2.43
524 548 6.639279 GTGTTTGTACCATAATTCGCAAAACT 59.361 34.615 0.00 0.00 0.00 2.66
527 551 9.182933 GTTTGTACCATAATTCGCAAAACTAAA 57.817 29.630 0.00 0.00 0.00 1.85
532 556 7.033185 ACCATAATTCGCAAAACTAAATGTCC 58.967 34.615 0.00 0.00 0.00 4.02
542 566 6.349033 GCAAAACTAAATGTCCAAGATACCGT 60.349 38.462 0.00 0.00 0.00 4.83
544 568 4.766375 ACTAAATGTCCAAGATACCGTGG 58.234 43.478 0.00 0.00 42.33 4.94
549 573 1.485066 GTCCAAGATACCGTGGGATGT 59.515 52.381 0.00 0.00 41.46 3.06
592 652 6.380274 TCACGGTCACTCCTCTAGAAAATATT 59.620 38.462 0.00 0.00 0.00 1.28
593 653 7.042335 CACGGTCACTCCTCTAGAAAATATTT 58.958 38.462 0.00 0.00 0.00 1.40
595 655 8.755977 ACGGTCACTCCTCTAGAAAATATTTAA 58.244 33.333 0.01 0.00 0.00 1.52
596 656 9.595823 CGGTCACTCCTCTAGAAAATATTTAAA 57.404 33.333 0.01 0.00 0.00 1.52
613 673 9.758651 AATATTTAAATATGCCCGTTTTCCTTC 57.241 29.630 19.08 0.00 32.17 3.46
614 674 6.844097 TTTAAATATGCCCGTTTTCCTTCT 57.156 33.333 0.00 0.00 0.00 2.85
615 675 6.844097 TTAAATATGCCCGTTTTCCTTCTT 57.156 33.333 0.00 0.00 0.00 2.52
616 676 5.738619 AAATATGCCCGTTTTCCTTCTTT 57.261 34.783 0.00 0.00 0.00 2.52
617 677 5.738619 AATATGCCCGTTTTCCTTCTTTT 57.261 34.783 0.00 0.00 0.00 2.27
618 678 5.738619 ATATGCCCGTTTTCCTTCTTTTT 57.261 34.783 0.00 0.00 0.00 1.94
649 709 6.189859 TGAGAATCAATATGCCTGTTTTCCT 58.810 36.000 0.00 0.00 45.97 3.36
656 716 6.041409 TCAATATGCCTGTTTTCCTGTGAAAA 59.959 34.615 0.00 0.00 45.72 2.29
669 729 4.058124 CCTGTGAAAAGATGAGAACGTGA 58.942 43.478 0.00 0.00 0.00 4.35
674 784 1.714794 AAGATGAGAACGTGAAGGCG 58.285 50.000 0.00 0.00 37.94 5.52
894 1012 3.026694 CAAATCCAATCCTCACCCTTCC 58.973 50.000 0.00 0.00 0.00 3.46
918 1036 3.488363 TCTAGATAAGCGAACCCCTCTC 58.512 50.000 0.00 0.00 0.00 3.20
940 1058 4.150454 CTCTCGCCCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
1092 1236 2.370445 CCCGCTCTCCACATCCCTT 61.370 63.158 0.00 0.00 0.00 3.95
1263 1410 2.034221 GGCAAGACCACCCTCACC 59.966 66.667 0.00 0.00 38.86 4.02
1662 1809 1.153369 GCTGCTCACGGCCTATGAA 60.153 57.895 0.00 0.00 42.81 2.57
1860 2007 0.035317 TGCTCGCTGTTGAGGATGTT 59.965 50.000 2.16 0.00 36.47 2.71
2280 2427 2.409055 GGCGAAGATGTGCATGCCA 61.409 57.895 16.68 13.21 42.03 4.92
2598 2745 2.892374 TCTGCCATCTGTCGTTATGTG 58.108 47.619 0.00 0.00 0.00 3.21
2646 2793 5.877012 TCCTCTTGTTGATATGCTTGAAGAC 59.123 40.000 0.00 0.00 0.00 3.01
2655 2802 6.951643 TGATATGCTTGAAGACGATTCATTG 58.048 36.000 0.00 6.51 0.00 2.82
2662 2809 5.611796 TGAAGACGATTCATTGTTCTTGG 57.388 39.130 4.13 0.00 0.00 3.61
2709 2856 5.524971 TGAGTTGGAGGTATACGGTTATG 57.475 43.478 0.00 0.00 0.00 1.90
2718 2865 7.235193 TGGAGGTATACGGTTATGGCTTATTTA 59.765 37.037 0.00 0.00 0.00 1.40
2772 2919 9.823098 GTATGCTTGCTTGATAGATTTATCTTG 57.177 33.333 4.99 0.00 38.32 3.02
2774 2921 8.510243 TGCTTGCTTGATAGATTTATCTTGAA 57.490 30.769 4.99 0.00 38.32 2.69
2775 2922 8.618677 TGCTTGCTTGATAGATTTATCTTGAAG 58.381 33.333 4.99 2.24 38.32 3.02
2776 2923 7.590689 GCTTGCTTGATAGATTTATCTTGAAGC 59.409 37.037 14.86 14.86 40.14 3.86
2778 2925 9.836864 TTGCTTGATAGATTTATCTTGAAGCTA 57.163 29.630 19.16 13.24 40.26 3.32
2790 2937 9.515226 TTTATCTTGAAGCTATTTGTTGGTACT 57.485 29.630 0.00 0.00 0.00 2.73
2791 2938 7.617041 ATCTTGAAGCTATTTGTTGGTACTC 57.383 36.000 0.00 0.00 0.00 2.59
2792 2939 5.938125 TCTTGAAGCTATTTGTTGGTACTCC 59.062 40.000 0.00 0.00 0.00 3.85
2793 2940 4.585879 TGAAGCTATTTGTTGGTACTCCC 58.414 43.478 0.00 0.00 0.00 4.30
2794 2941 4.288626 TGAAGCTATTTGTTGGTACTCCCT 59.711 41.667 0.00 0.00 0.00 4.20
2795 2942 4.489306 AGCTATTTGTTGGTACTCCCTC 57.511 45.455 0.00 0.00 0.00 4.30
2796 2943 3.200165 AGCTATTTGTTGGTACTCCCTCC 59.800 47.826 0.00 0.00 0.00 4.30
2797 2944 2.781681 ATTTGTTGGTACTCCCTCCG 57.218 50.000 0.00 0.00 0.00 4.63
2798 2945 0.688487 TTTGTTGGTACTCCCTCCGG 59.312 55.000 0.00 0.00 0.00 5.14
2799 2946 0.472352 TTGTTGGTACTCCCTCCGGT 60.472 55.000 0.00 0.00 0.00 5.28
2800 2947 0.901580 TGTTGGTACTCCCTCCGGTC 60.902 60.000 0.00 0.00 0.00 4.79
2801 2948 1.305549 TTGGTACTCCCTCCGGTCC 60.306 63.158 0.00 0.00 0.00 4.46
2802 2949 1.807771 TTGGTACTCCCTCCGGTCCT 61.808 60.000 0.00 0.00 0.00 3.85
2803 2950 0.920763 TGGTACTCCCTCCGGTCCTA 60.921 60.000 0.00 0.00 0.00 2.94
2804 2951 0.259938 GGTACTCCCTCCGGTCCTAA 59.740 60.000 0.00 0.00 0.00 2.69
2805 2952 1.342374 GGTACTCCCTCCGGTCCTAAA 60.342 57.143 0.00 0.00 0.00 1.85
2806 2953 2.675583 GTACTCCCTCCGGTCCTAAAT 58.324 52.381 0.00 0.00 0.00 1.40
2807 2954 3.437052 GGTACTCCCTCCGGTCCTAAATA 60.437 52.174 0.00 0.00 0.00 1.40
2808 2955 3.632420 ACTCCCTCCGGTCCTAAATAT 57.368 47.619 0.00 0.00 0.00 1.28
2809 2956 4.754411 ACTCCCTCCGGTCCTAAATATA 57.246 45.455 0.00 0.00 0.00 0.86
2810 2957 5.083953 ACTCCCTCCGGTCCTAAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
2811 2958 5.085219 ACTCCCTCCGGTCCTAAATATAAG 58.915 45.833 0.00 0.00 0.00 1.73
2812 2959 5.083953 TCCCTCCGGTCCTAAATATAAGT 57.916 43.478 0.00 0.00 0.00 2.24
2813 2960 5.082425 TCCCTCCGGTCCTAAATATAAGTC 58.918 45.833 0.00 0.00 0.00 3.01
2814 2961 5.085219 CCCTCCGGTCCTAAATATAAGTCT 58.915 45.833 0.00 0.00 0.00 3.24
2815 2962 5.543020 CCCTCCGGTCCTAAATATAAGTCTT 59.457 44.000 0.00 0.00 0.00 3.01
2816 2963 6.042897 CCCTCCGGTCCTAAATATAAGTCTTT 59.957 42.308 0.00 0.00 0.00 2.52
2817 2964 7.419865 CCCTCCGGTCCTAAATATAAGTCTTTT 60.420 40.741 0.00 0.00 0.00 2.27
2818 2965 7.441458 CCTCCGGTCCTAAATATAAGTCTTTTG 59.559 40.741 0.00 0.00 0.00 2.44
2819 2966 7.277396 TCCGGTCCTAAATATAAGTCTTTTGG 58.723 38.462 0.00 0.00 0.00 3.28
2820 2967 7.126115 TCCGGTCCTAAATATAAGTCTTTTGGA 59.874 37.037 0.00 0.00 35.06 3.53
2821 2968 7.441458 CCGGTCCTAAATATAAGTCTTTTGGAG 59.559 40.741 0.00 0.00 37.08 3.86
2822 2969 8.202137 CGGTCCTAAATATAAGTCTTTTGGAGA 58.798 37.037 0.00 0.00 37.08 3.71
2833 2980 7.693969 AAGTCTTTTGGAGATTTCAGTATGG 57.306 36.000 0.00 0.00 36.61 2.74
2834 2981 7.020827 AGTCTTTTGGAGATTTCAGTATGGA 57.979 36.000 0.00 0.00 36.61 3.41
2835 2982 6.881602 AGTCTTTTGGAGATTTCAGTATGGAC 59.118 38.462 0.00 0.00 36.61 4.02
2836 2983 6.881602 GTCTTTTGGAGATTTCAGTATGGACT 59.118 38.462 0.00 0.00 36.61 3.85
2837 2984 8.041323 GTCTTTTGGAGATTTCAGTATGGACTA 58.959 37.037 0.00 0.00 36.61 2.59
2838 2985 8.041323 TCTTTTGGAGATTTCAGTATGGACTAC 58.959 37.037 0.00 0.00 36.16 2.73
2839 2986 6.867519 TTGGAGATTTCAGTATGGACTACA 57.132 37.500 0.00 0.00 36.16 2.74
2840 2987 7.437713 TTGGAGATTTCAGTATGGACTACAT 57.562 36.000 0.00 0.00 43.68 2.29
2841 2988 8.547481 TTGGAGATTTCAGTATGGACTACATA 57.453 34.615 0.00 0.00 41.03 2.29
2852 2999 5.939764 ATGGACTACATACGGATGCATAT 57.060 39.130 7.78 0.00 38.26 1.78
2854 3001 6.451064 TGGACTACATACGGATGCATATAG 57.549 41.667 7.78 4.48 36.43 1.31
2855 3002 6.184789 TGGACTACATACGGATGCATATAGA 58.815 40.000 7.78 0.00 36.43 1.98
2856 3003 6.095021 TGGACTACATACGGATGCATATAGAC 59.905 42.308 7.78 2.44 36.43 2.59
2857 3004 6.095021 GGACTACATACGGATGCATATAGACA 59.905 42.308 7.78 0.00 36.43 3.41
2858 3005 7.201830 GGACTACATACGGATGCATATAGACAT 60.202 40.741 7.78 0.00 36.43 3.06
2859 3006 8.747538 ACTACATACGGATGCATATAGACATA 57.252 34.615 7.78 0.00 36.43 2.29
2860 3007 9.355916 ACTACATACGGATGCATATAGACATAT 57.644 33.333 7.78 0.00 36.43 1.78
2863 3010 9.890629 ACATACGGATGCATATAGACATATTTT 57.109 29.630 7.78 0.00 36.43 1.82
2867 3014 9.809096 ACGGATGCATATAGACATATTTTAGAG 57.191 33.333 0.00 0.00 0.00 2.43
2868 3015 9.809096 CGGATGCATATAGACATATTTTAGAGT 57.191 33.333 0.00 0.00 0.00 3.24
2889 3036 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2890 3037 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2891 3038 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2892 3039 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2893 3040 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2894 3041 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2895 3042 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2896 3043 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2897 3044 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2898 3045 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2899 3046 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2900 3047 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2901 3048 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
2902 3049 5.109210 TCATTTTGCTCTGTATGTAGTCCG 58.891 41.667 0.00 0.00 0.00 4.79
2903 3050 2.579207 TTGCTCTGTATGTAGTCCGC 57.421 50.000 0.00 0.00 0.00 5.54
2904 3051 1.470051 TGCTCTGTATGTAGTCCGCA 58.530 50.000 0.00 0.00 0.00 5.69
2905 3052 2.031870 TGCTCTGTATGTAGTCCGCAT 58.968 47.619 0.00 0.00 0.00 4.73
2906 3053 2.034685 TGCTCTGTATGTAGTCCGCATC 59.965 50.000 0.00 0.00 0.00 3.91
2907 3054 2.918549 GCTCTGTATGTAGTCCGCATCG 60.919 54.545 0.00 0.00 0.00 3.84
2923 3070 5.071955 CGCATCGGAATCTCTAAAAAGAC 57.928 43.478 0.00 0.00 0.00 3.01
2924 3071 4.806247 CGCATCGGAATCTCTAAAAAGACT 59.194 41.667 0.00 0.00 0.00 3.24
2925 3072 5.292101 CGCATCGGAATCTCTAAAAAGACTT 59.708 40.000 0.00 0.00 0.00 3.01
2926 3073 6.475727 CGCATCGGAATCTCTAAAAAGACTTA 59.524 38.462 0.00 0.00 0.00 2.24
2927 3074 7.169982 CGCATCGGAATCTCTAAAAAGACTTAT 59.830 37.037 0.00 0.00 0.00 1.73
2928 3075 9.477484 GCATCGGAATCTCTAAAAAGACTTATA 57.523 33.333 0.00 0.00 0.00 0.98
2943 3090 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2944 3091 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2964 3111 8.997734 AGAGGGAGTAGTTCATATTGATTTTCT 58.002 33.333 0.00 0.00 0.00 2.52
3008 3155 3.375922 CAGCAATCATGTGTGTGCTCATA 59.624 43.478 10.70 0.00 45.33 2.15
3042 3189 5.445806 GCAAAAACAGTTTCATGTGTTGGTC 60.446 40.000 0.00 0.00 36.98 4.02
3091 3241 5.348164 TCGCAGTTCATATCGATTTTCTGA 58.652 37.500 1.71 0.00 0.00 3.27
3092 3242 5.460091 TCGCAGTTCATATCGATTTTCTGAG 59.540 40.000 1.71 7.95 0.00 3.35
3095 3245 5.049818 CAGTTCATATCGATTTTCTGAGGGC 60.050 44.000 1.71 0.00 0.00 5.19
3096 3246 4.687901 TCATATCGATTTTCTGAGGGCA 57.312 40.909 1.71 0.00 0.00 5.36
3097 3247 4.635223 TCATATCGATTTTCTGAGGGCAG 58.365 43.478 1.71 0.00 43.67 4.85
3098 3248 2.338577 ATCGATTTTCTGAGGGCAGG 57.661 50.000 0.00 0.00 42.53 4.85
3099 3249 0.392998 TCGATTTTCTGAGGGCAGGC 60.393 55.000 0.00 0.00 42.53 4.85
3100 3250 1.379642 CGATTTTCTGAGGGCAGGCC 61.380 60.000 4.33 4.33 42.53 5.19
3101 3251 0.033699 GATTTTCTGAGGGCAGGCCT 60.034 55.000 17.36 17.36 42.53 5.19
3102 3252 0.324091 ATTTTCTGAGGGCAGGCCTG 60.324 55.000 29.34 29.34 42.53 4.85
3103 3253 2.430704 TTTTCTGAGGGCAGGCCTGG 62.431 60.000 33.46 16.08 42.53 4.45
3116 3266 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
3117 3267 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
3118 3268 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
3119 3269 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
3120 3270 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
3121 3271 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
3122 3272 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
3123 3273 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
3124 3274 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
3125 3275 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
3126 3276 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
3127 3277 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
3128 3278 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
3129 3279 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
3130 3280 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
3131 3281 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
3132 3282 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
3133 3283 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
3134 3284 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
3135 3285 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
3136 3286 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
3137 3287 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
3138 3288 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
3139 3289 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
3140 3290 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
3141 3291 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
3142 3292 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
3143 3293 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
3144 3294 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
3145 3295 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
3146 3296 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
3147 3297 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
3148 3298 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
3149 3299 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
3150 3300 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
3151 3301 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
3152 3302 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
3153 3303 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
3164 3314 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
3165 3315 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
3166 3316 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
3167 3317 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
3168 3318 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
3169 3319 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
3170 3320 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
3171 3321 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
3172 3322 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
3173 3323 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
3174 3324 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
3175 3325 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
3176 3326 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
3177 3327 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
3187 3337 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3188 3338 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3189 3339 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3190 3340 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3191 3341 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3192 3342 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3193 3343 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3194 3344 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3195 3345 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3196 3346 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3197 3347 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3198 3348 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
3199 3349 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
3200 3350 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
3201 3351 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
3202 3352 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
3203 3353 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
3204 3354 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
3205 3355 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
3206 3356 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
3207 3357 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
3208 3358 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
3209 3359 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
3210 3360 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
3211 3361 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
3212 3362 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
3213 3363 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
3214 3364 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
3215 3365 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
3216 3366 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
3217 3367 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
3218 3368 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3219 3369 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3221 3371 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3222 3372 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3223 3373 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3224 3374 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3225 3375 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
3226 3376 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
3227 3377 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
3234 3384 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
3235 3385 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
3236 3386 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
3237 3387 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
3238 3388 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
3239 3389 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3240 3390 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3241 3391 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3242 3392 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3243 3393 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
3244 3394 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
3245 3395 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3246 3396 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3247 3397 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3248 3398 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3249 3399 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3250 3400 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3251 3401 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3252 3402 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3253 3403 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3254 3404 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3255 3405 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
3305 3455 1.134580 CGTCTGCTCATCTGGGTCAAT 60.135 52.381 0.00 0.00 0.00 2.57
3306 3456 2.286872 GTCTGCTCATCTGGGTCAATG 58.713 52.381 0.00 0.00 0.00 2.82
3307 3457 1.022735 CTGCTCATCTGGGTCAATGC 58.977 55.000 0.00 0.00 0.00 3.56
3309 3459 1.022735 GCTCATCTGGGTCAATGCAG 58.977 55.000 0.00 0.00 0.00 4.41
3311 3461 2.942752 GCTCATCTGGGTCAATGCAGAA 60.943 50.000 0.00 0.00 0.00 3.02
3312 3462 3.349927 CTCATCTGGGTCAATGCAGAAA 58.650 45.455 0.00 0.00 0.00 2.52
3313 3463 3.349927 TCATCTGGGTCAATGCAGAAAG 58.650 45.455 0.00 0.00 0.00 2.62
3314 3464 1.538047 TCTGGGTCAATGCAGAAAGC 58.462 50.000 0.00 0.00 45.96 3.51
3364 3514 3.096489 TGCTGAATTTTTGGTCAGTGC 57.904 42.857 2.90 0.00 33.17 4.40
3368 3518 2.881513 TGAATTTTTGGTCAGTGCGCTA 59.118 40.909 9.73 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.250295 TTTGGGCACAAGAGGACGAG 60.250 55.000 0.00 0.00 37.97 4.18
110 111 5.008019 ACCTATTTGCTATGCTCAATTCACG 59.992 40.000 0.00 0.00 0.00 4.35
172 173 8.066595 CGAGCATTCTTGATAAATTTAGGACTG 58.933 37.037 3.94 5.53 0.00 3.51
189 190 3.620488 TCCAATAAAAGGCGAGCATTCT 58.380 40.909 0.00 0.00 0.00 2.40
260 279 7.364144 CCATGGGATTGATAGAATCATCGTAGA 60.364 40.741 2.85 0.00 45.75 2.59
264 283 5.494724 ACCATGGGATTGATAGAATCATCG 58.505 41.667 18.09 0.00 39.39 3.84
292 311 3.499918 AGCATTTTTGAGAGACTGAACCG 59.500 43.478 0.00 0.00 0.00 4.44
297 316 7.623925 GCTCTTAGAAGCATTTTTGAGAGACTG 60.624 40.741 0.00 0.00 42.05 3.51
298 317 6.371271 GCTCTTAGAAGCATTTTTGAGAGACT 59.629 38.462 0.00 0.00 42.05 3.24
303 322 5.121454 ACTCGCTCTTAGAAGCATTTTTGAG 59.879 40.000 4.99 0.00 42.62 3.02
306 325 4.378874 GCACTCGCTCTTAGAAGCATTTTT 60.379 41.667 4.99 0.00 42.62 1.94
316 335 1.718178 CGCATATGCACTCGCTCTTAG 59.282 52.381 26.52 2.63 42.21 2.18
357 376 6.324512 ACACCAACATGGACATTTATATGCAT 59.675 34.615 3.79 3.79 40.96 3.96
358 377 5.655974 ACACCAACATGGACATTTATATGCA 59.344 36.000 2.85 0.00 40.96 3.96
405 425 3.631145 TGCGGAATACGGTATAGACAC 57.369 47.619 0.22 0.00 44.51 3.67
415 435 5.839483 GCAGGATTAGTCTTGCGGAATACG 61.839 50.000 6.58 0.00 45.67 3.06
425 445 3.314541 AACGTTCGCAGGATTAGTCTT 57.685 42.857 0.00 0.00 0.00 3.01
437 457 3.063045 CCCAAGGTATCTTTAACGTTCGC 59.937 47.826 2.82 0.00 0.00 4.70
442 462 6.972722 TCAAAAACCCAAGGTATCTTTAACG 58.027 36.000 0.00 0.00 33.12 3.18
445 465 6.014012 CCCTCAAAAACCCAAGGTATCTTTA 58.986 40.000 0.00 0.00 33.12 1.85
459 479 4.020662 TGGTATTTCATGGCCCTCAAAAAC 60.021 41.667 0.00 0.00 0.00 2.43
485 509 0.661020 AAACACAGGCACTTACGCAC 59.339 50.000 0.00 0.00 34.60 5.34
488 512 2.222445 GGTACAAACACAGGCACTTACG 59.778 50.000 0.00 0.00 34.60 3.18
523 547 4.127171 CCCACGGTATCTTGGACATTTAG 58.873 47.826 0.00 0.00 34.53 1.85
524 548 3.775866 TCCCACGGTATCTTGGACATTTA 59.224 43.478 0.00 0.00 34.53 1.40
527 551 1.874129 TCCCACGGTATCTTGGACAT 58.126 50.000 0.00 0.00 34.53 3.06
532 556 1.670811 GCAACATCCCACGGTATCTTG 59.329 52.381 0.00 0.00 0.00 3.02
544 568 3.776158 TGCACTTGGGCAACATCC 58.224 55.556 0.00 0.00 41.65 3.51
554 578 0.732571 ACCGTGACTGTTTGCACTTG 59.267 50.000 0.00 0.00 32.98 3.16
592 652 6.844097 AAGAAGGAAAACGGGCATATTTAA 57.156 33.333 0.00 0.00 0.00 1.52
593 653 6.844097 AAAGAAGGAAAACGGGCATATTTA 57.156 33.333 0.00 0.00 0.00 1.40
595 655 5.738619 AAAAGAAGGAAAACGGGCATATT 57.261 34.783 0.00 0.00 0.00 1.28
596 656 5.738619 AAAAAGAAGGAAAACGGGCATAT 57.261 34.783 0.00 0.00 0.00 1.78
616 676 9.426837 CAGGCATATTGATTCTCAAAAAGAAAA 57.573 29.630 0.00 0.00 46.85 2.29
617 677 8.587608 ACAGGCATATTGATTCTCAAAAAGAAA 58.412 29.630 0.00 0.00 46.85 2.52
619 679 7.707624 ACAGGCATATTGATTCTCAAAAAGA 57.292 32.000 0.00 0.00 40.12 2.52
620 680 8.767478 AAACAGGCATATTGATTCTCAAAAAG 57.233 30.769 0.00 0.00 40.12 2.27
621 681 9.206870 GAAAACAGGCATATTGATTCTCAAAAA 57.793 29.630 0.00 0.00 40.12 1.94
622 682 7.818930 GGAAAACAGGCATATTGATTCTCAAAA 59.181 33.333 0.00 0.00 40.12 2.44
623 683 7.178983 AGGAAAACAGGCATATTGATTCTCAAA 59.821 33.333 0.00 0.00 40.12 2.69
624 684 6.664816 AGGAAAACAGGCATATTGATTCTCAA 59.335 34.615 0.00 0.00 41.09 3.02
625 685 6.095860 CAGGAAAACAGGCATATTGATTCTCA 59.904 38.462 0.00 0.00 0.00 3.27
626 686 6.096001 ACAGGAAAACAGGCATATTGATTCTC 59.904 38.462 0.00 0.00 0.00 2.87
627 687 5.954150 ACAGGAAAACAGGCATATTGATTCT 59.046 36.000 0.00 0.00 0.00 2.40
628 688 6.038356 CACAGGAAAACAGGCATATTGATTC 58.962 40.000 0.00 0.00 0.00 2.52
629 689 5.716228 TCACAGGAAAACAGGCATATTGATT 59.284 36.000 0.00 0.00 0.00 2.57
630 690 5.263599 TCACAGGAAAACAGGCATATTGAT 58.736 37.500 0.00 0.00 0.00 2.57
631 691 4.661222 TCACAGGAAAACAGGCATATTGA 58.339 39.130 0.00 0.00 0.00 2.57
632 692 5.389859 TTCACAGGAAAACAGGCATATTG 57.610 39.130 0.00 0.00 0.00 1.90
633 693 6.267471 TCTTTTCACAGGAAAACAGGCATATT 59.733 34.615 0.00 0.00 45.51 1.28
634 694 5.774690 TCTTTTCACAGGAAAACAGGCATAT 59.225 36.000 0.00 0.00 45.51 1.78
635 695 5.136828 TCTTTTCACAGGAAAACAGGCATA 58.863 37.500 0.00 0.00 45.51 3.14
636 696 3.960102 TCTTTTCACAGGAAAACAGGCAT 59.040 39.130 0.00 0.00 45.51 4.40
637 697 3.360867 TCTTTTCACAGGAAAACAGGCA 58.639 40.909 0.00 0.00 45.51 4.75
638 698 4.037923 TCATCTTTTCACAGGAAAACAGGC 59.962 41.667 0.00 0.00 45.51 4.85
639 699 5.532406 TCTCATCTTTTCACAGGAAAACAGG 59.468 40.000 0.00 0.00 45.51 4.00
640 700 6.624352 TCTCATCTTTTCACAGGAAAACAG 57.376 37.500 0.00 0.00 45.51 3.16
641 701 6.458206 CGTTCTCATCTTTTCACAGGAAAACA 60.458 38.462 0.00 0.00 45.51 2.83
649 709 4.511454 CCTTCACGTTCTCATCTTTTCACA 59.489 41.667 0.00 0.00 0.00 3.58
656 716 0.108615 CCGCCTTCACGTTCTCATCT 60.109 55.000 0.00 0.00 0.00 2.90
659 719 0.105224 TTTCCGCCTTCACGTTCTCA 59.895 50.000 0.00 0.00 0.00 3.27
669 729 1.152546 AACCTTGCCTTTCCGCCTT 60.153 52.632 0.00 0.00 0.00 4.35
674 784 0.686789 AATGCCAACCTTGCCTTTCC 59.313 50.000 0.00 0.00 0.00 3.13
834 952 2.356433 GATTAGGCGAGGGCGAGC 60.356 66.667 0.00 0.00 41.24 5.03
894 1012 3.492337 AGGGGTTCGCTTATCTAGAGAG 58.508 50.000 0.00 0.00 34.02 3.20
935 1053 1.273552 GGGATGGATAGGGAGAGGGAG 60.274 61.905 0.00 0.00 0.00 4.30
936 1054 0.793617 GGGATGGATAGGGAGAGGGA 59.206 60.000 0.00 0.00 0.00 4.20
937 1055 0.493639 TGGGATGGATAGGGAGAGGG 59.506 60.000 0.00 0.00 0.00 4.30
938 1056 2.476199 GATGGGATGGATAGGGAGAGG 58.524 57.143 0.00 0.00 0.00 3.69
939 1057 2.045605 AGGATGGGATGGATAGGGAGAG 59.954 54.545 0.00 0.00 0.00 3.20
940 1058 2.045047 GAGGATGGGATGGATAGGGAGA 59.955 54.545 0.00 0.00 0.00 3.71
1662 1809 2.288666 GGCACATTGTCACCATCGTAT 58.711 47.619 1.31 0.00 0.00 3.06
2280 2427 2.467880 ACCATCTTGATACGGTCACCT 58.532 47.619 0.00 0.00 36.32 4.00
2598 2745 2.137523 CAAAATGGCCAACAGTCAAGC 58.862 47.619 10.96 0.00 0.00 4.01
2646 2793 3.012518 AGCTCCCAAGAACAATGAATCG 58.987 45.455 0.00 0.00 0.00 3.34
2744 2891 9.736414 AGATAAATCTATCAAGCAAGCATACAT 57.264 29.630 0.00 0.00 37.05 2.29
2745 2892 9.565090 AAGATAAATCTATCAAGCAAGCATACA 57.435 29.630 0.00 0.00 37.05 2.29
2746 2893 9.823098 CAAGATAAATCTATCAAGCAAGCATAC 57.177 33.333 0.00 0.00 37.05 2.39
2747 2894 9.783081 TCAAGATAAATCTATCAAGCAAGCATA 57.217 29.630 0.00 0.00 37.05 3.14
2748 2895 8.687292 TCAAGATAAATCTATCAAGCAAGCAT 57.313 30.769 0.00 0.00 37.05 3.79
2749 2896 8.510243 TTCAAGATAAATCTATCAAGCAAGCA 57.490 30.769 0.00 0.00 37.05 3.91
2772 2919 4.844884 AGGGAGTACCAACAAATAGCTTC 58.155 43.478 0.00 0.00 43.89 3.86
2774 2921 3.200165 GGAGGGAGTACCAACAAATAGCT 59.800 47.826 0.00 0.00 43.89 3.32
2775 2922 3.542648 GGAGGGAGTACCAACAAATAGC 58.457 50.000 0.00 0.00 43.89 2.97
2776 2923 3.793559 CGGAGGGAGTACCAACAAATAG 58.206 50.000 0.00 0.00 43.89 1.73
2778 2925 2.781681 CGGAGGGAGTACCAACAAAT 57.218 50.000 0.00 0.00 43.89 2.32
2793 2940 7.441458 CCAAAAGACTTATATTTAGGACCGGAG 59.559 40.741 9.46 0.00 0.00 4.63
2794 2941 7.126115 TCCAAAAGACTTATATTTAGGACCGGA 59.874 37.037 9.46 0.00 0.00 5.14
2795 2942 7.277396 TCCAAAAGACTTATATTTAGGACCGG 58.723 38.462 0.00 0.00 0.00 5.28
2796 2943 8.202137 TCTCCAAAAGACTTATATTTAGGACCG 58.798 37.037 0.00 0.00 0.00 4.79
2807 2954 9.401058 CCATACTGAAATCTCCAAAAGACTTAT 57.599 33.333 0.00 0.00 36.65 1.73
2808 2955 8.602424 TCCATACTGAAATCTCCAAAAGACTTA 58.398 33.333 0.00 0.00 36.65 2.24
2809 2956 7.391833 GTCCATACTGAAATCTCCAAAAGACTT 59.608 37.037 0.00 0.00 36.65 3.01
2810 2957 6.881602 GTCCATACTGAAATCTCCAAAAGACT 59.118 38.462 0.00 0.00 36.65 3.24
2811 2958 6.881602 AGTCCATACTGAAATCTCCAAAAGAC 59.118 38.462 0.00 0.00 33.38 3.01
2812 2959 7.020827 AGTCCATACTGAAATCTCCAAAAGA 57.979 36.000 0.00 0.00 34.52 2.52
2813 2960 7.824289 TGTAGTCCATACTGAAATCTCCAAAAG 59.176 37.037 0.00 0.00 36.36 2.27
2814 2961 7.685481 TGTAGTCCATACTGAAATCTCCAAAA 58.315 34.615 0.00 0.00 36.36 2.44
2815 2962 7.252612 TGTAGTCCATACTGAAATCTCCAAA 57.747 36.000 0.00 0.00 36.36 3.28
2816 2963 6.867519 TGTAGTCCATACTGAAATCTCCAA 57.132 37.500 0.00 0.00 36.36 3.53
2829 2976 7.996644 TCTATATGCATCCGTATGTAGTCCATA 59.003 37.037 0.19 0.00 32.91 2.74
2830 2977 5.939764 ATATGCATCCGTATGTAGTCCAT 57.060 39.130 0.19 0.00 35.38 3.41
2831 2978 6.095021 GTCTATATGCATCCGTATGTAGTCCA 59.905 42.308 0.19 0.00 32.91 4.02
2832 2979 6.095021 TGTCTATATGCATCCGTATGTAGTCC 59.905 42.308 0.19 0.00 32.91 3.85
2833 2980 7.085052 TGTCTATATGCATCCGTATGTAGTC 57.915 40.000 0.19 0.00 32.91 2.59
2834 2981 7.646548 ATGTCTATATGCATCCGTATGTAGT 57.353 36.000 0.19 0.00 32.91 2.73
2837 2984 9.890629 AAAATATGTCTATATGCATCCGTATGT 57.109 29.630 0.19 0.00 35.38 2.29
2841 2988 9.809096 CTCTAAAATATGTCTATATGCATCCGT 57.191 33.333 0.19 0.00 30.00 4.69
2842 2989 9.809096 ACTCTAAAATATGTCTATATGCATCCG 57.191 33.333 0.19 0.00 30.00 4.18
2867 3014 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2868 3015 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2869 3016 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2870 3017 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2871 3018 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2872 3019 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2873 3020 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2874 3021 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2875 3022 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2876 3023 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
2877 3024 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
2878 3025 5.233050 CGGACTACATACAGAGCAAAATGAG 59.767 44.000 0.00 0.00 0.00 2.90
2879 3026 5.109210 CGGACTACATACAGAGCAAAATGA 58.891 41.667 0.00 0.00 0.00 2.57
2880 3027 4.260375 GCGGACTACATACAGAGCAAAATG 60.260 45.833 0.00 0.00 0.00 2.32
2881 3028 3.871594 GCGGACTACATACAGAGCAAAAT 59.128 43.478 0.00 0.00 0.00 1.82
2882 3029 3.259064 GCGGACTACATACAGAGCAAAA 58.741 45.455 0.00 0.00 0.00 2.44
2883 3030 2.232696 TGCGGACTACATACAGAGCAAA 59.767 45.455 0.00 0.00 0.00 3.68
2884 3031 1.822371 TGCGGACTACATACAGAGCAA 59.178 47.619 0.00 0.00 0.00 3.91
2885 3032 1.470051 TGCGGACTACATACAGAGCA 58.530 50.000 0.00 0.00 0.00 4.26
2886 3033 2.667137 GATGCGGACTACATACAGAGC 58.333 52.381 0.00 0.00 0.00 4.09
2887 3034 2.922384 CGATGCGGACTACATACAGAG 58.078 52.381 0.00 0.00 0.00 3.35
2901 3048 4.806247 AGTCTTTTTAGAGATTCCGATGCG 59.194 41.667 0.00 0.00 0.00 4.73
2902 3049 6.670077 AAGTCTTTTTAGAGATTCCGATGC 57.330 37.500 0.00 0.00 0.00 3.91
2917 3064 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2918 3065 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2919 3066 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2920 3067 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2921 3068 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2922 3069 9.369672 CTACTCCCTCTGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 0.00 2.24
2923 3070 9.369672 ACTACTCCCTCTGTTCCTAAATATAAG 57.630 37.037 0.00 0.00 0.00 1.73
2924 3071 9.725206 AACTACTCCCTCTGTTCCTAAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
2925 3072 9.364653 GAACTACTCCCTCTGTTCCTAAATATA 57.635 37.037 0.00 0.00 34.47 0.86
2926 3073 7.844779 TGAACTACTCCCTCTGTTCCTAAATAT 59.155 37.037 0.00 0.00 38.29 1.28
2927 3074 7.186972 TGAACTACTCCCTCTGTTCCTAAATA 58.813 38.462 0.00 0.00 38.29 1.40
2928 3075 6.023603 TGAACTACTCCCTCTGTTCCTAAAT 58.976 40.000 0.00 0.00 38.29 1.40
2929 3076 5.399991 TGAACTACTCCCTCTGTTCCTAAA 58.600 41.667 0.00 0.00 38.29 1.85
2930 3077 5.006896 TGAACTACTCCCTCTGTTCCTAA 57.993 43.478 0.00 0.00 38.29 2.69
2931 3078 4.669866 TGAACTACTCCCTCTGTTCCTA 57.330 45.455 0.00 0.00 38.29 2.94
2932 3079 3.544698 TGAACTACTCCCTCTGTTCCT 57.455 47.619 0.00 0.00 38.29 3.36
2933 3080 6.098409 TCAATATGAACTACTCCCTCTGTTCC 59.902 42.308 0.00 0.00 38.29 3.62
2934 3081 7.113658 TCAATATGAACTACTCCCTCTGTTC 57.886 40.000 0.00 0.00 39.18 3.18
2935 3082 7.682787 ATCAATATGAACTACTCCCTCTGTT 57.317 36.000 0.00 0.00 0.00 3.16
2936 3083 7.682787 AATCAATATGAACTACTCCCTCTGT 57.317 36.000 0.00 0.00 0.00 3.41
2937 3084 8.970859 AAAATCAATATGAACTACTCCCTCTG 57.029 34.615 0.00 0.00 0.00 3.35
2938 3085 8.997734 AGAAAATCAATATGAACTACTCCCTCT 58.002 33.333 0.00 0.00 0.00 3.69
2939 3086 9.050601 CAGAAAATCAATATGAACTACTCCCTC 57.949 37.037 0.00 0.00 0.00 4.30
2940 3087 7.500559 GCAGAAAATCAATATGAACTACTCCCT 59.499 37.037 0.00 0.00 0.00 4.20
2941 3088 7.500559 AGCAGAAAATCAATATGAACTACTCCC 59.499 37.037 0.00 0.00 0.00 4.30
2942 3089 8.341173 CAGCAGAAAATCAATATGAACTACTCC 58.659 37.037 0.00 0.00 0.00 3.85
2943 3090 8.341173 CCAGCAGAAAATCAATATGAACTACTC 58.659 37.037 0.00 0.00 0.00 2.59
2944 3091 7.831193 ACCAGCAGAAAATCAATATGAACTACT 59.169 33.333 0.00 0.00 0.00 2.57
3008 3155 9.291664 CATGAAACTGTTTTTGCATTGAAAAAT 57.708 25.926 7.28 0.00 37.20 1.82
3042 3189 3.683989 CACGCCTTGCTATAACACAATG 58.316 45.455 0.00 0.00 0.00 2.82
3071 3221 5.049818 GCCCTCAGAAAATCGATATGAACTG 60.050 44.000 0.00 5.15 0.00 3.16
3099 3249 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
3100 3250 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
3101 3251 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
3102 3252 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
3103 3253 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
3104 3254 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
3105 3255 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
3111 3261 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
3112 3262 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
3113 3263 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
3114 3264 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
3115 3265 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
3116 3266 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
3117 3267 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
3128 3278 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
3129 3279 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
3130 3280 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
3131 3281 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
3132 3282 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
3133 3283 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
3134 3284 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
3135 3285 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
3136 3286 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
3137 3287 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
3146 3296 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
3147 3297 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
3148 3298 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
3149 3299 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
3150 3300 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
3151 3301 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
3152 3302 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
3153 3303 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
3155 3305 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
3156 3306 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
3157 3307 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
3158 3308 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
3169 3319 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
3170 3320 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
3171 3321 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
3172 3322 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
3173 3323 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
3174 3324 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
3175 3325 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
3176 3326 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
3177 3327 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
3178 3328 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
3179 3329 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
3180 3330 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
3181 3331 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
3182 3332 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
3183 3333 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
3184 3334 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
3185 3335 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
3186 3336 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
3187 3337 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
3188 3338 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
3189 3339 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
3190 3340 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
3191 3341 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
3192 3342 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
3193 3343 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
3194 3344 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
3195 3345 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
3196 3346 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
3197 3347 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
3198 3348 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
3199 3349 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3200 3350 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3201 3351 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3202 3352 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3204 3354 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3205 3355 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3206 3356 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3207 3357 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
3208 3358 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3209 3359 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
3210 3360 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
3218 3368 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3219 3369 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3220 3370 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3221 3371 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3222 3372 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3223 3373 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
3224 3374 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
3225 3375 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
3226 3376 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3227 3377 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3228 3378 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3229 3379 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3230 3380 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3231 3381 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3232 3382 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3233 3383 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3234 3384 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3235 3385 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
3236 3386 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
3237 3387 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
3238 3388 1.347707 CTAAAGGACAGACCCAGTGCA 59.652 52.381 0.00 0.00 40.05 4.57
3239 3389 1.946283 GCTAAAGGACAGACCCAGTGC 60.946 57.143 0.00 0.00 40.05 4.40
3240 3390 1.347707 TGCTAAAGGACAGACCCAGTG 59.652 52.381 0.00 0.00 40.05 3.66
3241 3391 1.729586 TGCTAAAGGACAGACCCAGT 58.270 50.000 0.00 0.00 40.05 4.00
3242 3392 2.039084 AGTTGCTAAAGGACAGACCCAG 59.961 50.000 0.00 0.00 40.05 4.45
3243 3393 2.054799 AGTTGCTAAAGGACAGACCCA 58.945 47.619 0.00 0.00 40.05 4.51
3244 3394 2.861147 AGTTGCTAAAGGACAGACCC 57.139 50.000 0.00 0.00 40.05 4.46
3245 3395 5.306394 AGTTAAGTTGCTAAAGGACAGACC 58.694 41.667 0.00 0.00 39.35 3.85
3246 3396 6.659776 CAAGTTAAGTTGCTAAAGGACAGAC 58.340 40.000 10.02 0.00 0.00 3.51
3247 3397 6.861065 CAAGTTAAGTTGCTAAAGGACAGA 57.139 37.500 10.02 0.00 0.00 3.41
3306 3456 3.120649 CCTTACACGTAACTGCTTTCTGC 60.121 47.826 0.00 0.00 43.25 4.26
3307 3457 4.056050 ACCTTACACGTAACTGCTTTCTG 58.944 43.478 0.00 0.00 0.00 3.02
3309 3459 6.146673 ACATAACCTTACACGTAACTGCTTTC 59.853 38.462 0.00 0.00 0.00 2.62
3311 3461 5.544650 ACATAACCTTACACGTAACTGCTT 58.455 37.500 0.00 0.00 0.00 3.91
3312 3462 5.143376 ACATAACCTTACACGTAACTGCT 57.857 39.130 0.00 0.00 0.00 4.24
3313 3463 5.851047 AACATAACCTTACACGTAACTGC 57.149 39.130 0.00 0.00 0.00 4.40
3314 3464 7.872163 TGTAACATAACCTTACACGTAACTG 57.128 36.000 0.00 0.00 30.70 3.16
3315 3465 7.599998 CCTTGTAACATAACCTTACACGTAACT 59.400 37.037 0.00 0.00 34.53 2.24
3316 3466 7.622048 GCCTTGTAACATAACCTTACACGTAAC 60.622 40.741 0.00 0.00 34.53 2.50
3318 3468 5.868801 GCCTTGTAACATAACCTTACACGTA 59.131 40.000 0.00 0.00 34.53 3.57
3319 3469 4.692155 GCCTTGTAACATAACCTTACACGT 59.308 41.667 0.00 0.00 34.53 4.49
3364 3514 5.176774 TGAAATGGTACGAATTGCTATAGCG 59.823 40.000 19.55 7.56 45.83 4.26
3368 3518 5.885912 ACCTTGAAATGGTACGAATTGCTAT 59.114 36.000 0.00 0.00 43.43 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.