Multiple sequence alignment - TraesCS6B01G238500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G238500 chr6B 100.000 6123 0 0 1 6123 415041796 415035674 0.000000e+00 11308.0
1 TraesCS6B01G238500 chr6B 95.050 101 5 0 1802 1902 170863780 170863680 6.350000e-35 159.0
2 TraesCS6B01G238500 chr6D 95.116 2191 59 18 3559 5731 266957096 266954936 0.000000e+00 3410.0
3 TraesCS6B01G238500 chr6D 93.345 1773 77 12 38 1802 266960487 266958748 0.000000e+00 2582.0
4 TraesCS6B01G238500 chr6D 95.609 1002 40 3 2567 3566 266958120 266957121 0.000000e+00 1604.0
5 TraesCS6B01G238500 chr6D 98.173 602 10 1 1968 2569 266958756 266958156 0.000000e+00 1050.0
6 TraesCS6B01G238500 chr6D 90.083 242 6 9 5891 6123 266954089 266953857 1.290000e-76 298.0
7 TraesCS6B01G238500 chr6D 88.889 108 7 2 5737 5844 266954682 266954580 1.790000e-25 128.0
8 TraesCS6B01G238500 chr6A 94.044 1763 71 10 38 1794 379663605 379661871 0.000000e+00 2643.0
9 TraesCS6B01G238500 chr6A 96.677 1264 27 10 3559 4816 379659897 379658643 0.000000e+00 2087.0
10 TraesCS6B01G238500 chr6A 96.074 917 33 2 2651 3566 379660837 379659923 0.000000e+00 1491.0
11 TraesCS6B01G238500 chr6A 91.542 934 44 13 4813 5730 379658403 379657489 0.000000e+00 1254.0
12 TraesCS6B01G238500 chr6A 96.672 601 19 1 1968 2568 379661866 379661267 0.000000e+00 998.0
13 TraesCS6B01G238500 chr6A 92.469 239 8 5 5892 6123 379656283 379656048 3.540000e-87 333.0
14 TraesCS6B01G238500 chr6A 89.256 121 8 2 5735 5855 379656391 379656276 4.950000e-31 147.0
15 TraesCS6B01G238500 chr6A 94.318 88 4 1 2567 2653 379661230 379661143 3.850000e-27 134.0
16 TraesCS6B01G238500 chr6A 87.059 85 9 2 3272 3355 122061134 122061051 1.820000e-15 95.3
17 TraesCS6B01G238500 chr2D 86.517 534 65 7 998 1527 430464748 430464218 1.140000e-161 580.0
18 TraesCS6B01G238500 chr2D 84.892 278 42 0 4846 5123 430462313 430462036 1.300000e-71 281.0
19 TraesCS6B01G238500 chr2D 94.595 111 4 2 1793 1902 579065403 579065512 2.930000e-38 171.0
20 TraesCS6B01G238500 chr2D 96.040 101 4 0 1802 1902 526224764 526224664 1.370000e-36 165.0
21 TraesCS6B01G238500 chr2A 86.441 531 64 7 1001 1527 555821306 555821832 5.320000e-160 575.0
22 TraesCS6B01G238500 chr2A 84.589 292 42 3 4835 5123 555823665 555823956 2.790000e-73 287.0
23 TraesCS6B01G238500 chr2A 85.600 250 36 0 3933 4182 555822966 555823215 4.710000e-66 263.0
24 TraesCS6B01G238500 chr2B 86.090 532 68 5 999 1527 508251076 508250548 8.910000e-158 568.0
25 TraesCS6B01G238500 chr2B 84.536 291 43 2 4835 5123 508248324 508248034 2.790000e-73 287.0
26 TraesCS6B01G238500 chr2B 94.495 109 5 1 1795 1902 373185774 373185666 3.800000e-37 167.0
27 TraesCS6B01G238500 chr2B 100.000 69 0 0 1899 1967 793422816 793422748 1.790000e-25 128.0
28 TraesCS6B01G238500 chr3D 97.000 100 3 0 1803 1902 520444640 520444541 1.060000e-37 169.0
29 TraesCS6B01G238500 chr3D 100.000 69 0 0 1899 1967 481706654 481706722 1.790000e-25 128.0
30 TraesCS6B01G238500 chr3D 97.297 74 1 1 1899 1972 455010532 455010460 2.320000e-24 124.0
31 TraesCS6B01G238500 chr3D 88.235 85 8 2 3272 3355 30011918 30012001 3.910000e-17 100.0
32 TraesCS6B01G238500 chr7A 96.040 101 4 0 1802 1902 730881729 730881829 1.370000e-36 165.0
33 TraesCS6B01G238500 chr7A 88.235 85 8 2 3272 3355 356548024 356547941 3.910000e-17 100.0
34 TraesCS6B01G238500 chr7B 96.000 100 4 0 1803 1902 15101169 15101070 4.910000e-36 163.0
35 TraesCS6B01G238500 chr7B 96.000 100 4 0 1803 1902 367495737 367495836 4.910000e-36 163.0
36 TraesCS6B01G238500 chr4B 96.000 100 4 0 1803 1902 545764569 545764470 4.910000e-36 163.0
37 TraesCS6B01G238500 chr4B 82.955 176 17 8 1803 1967 429347561 429347388 4.950000e-31 147.0
38 TraesCS6B01G238500 chr7D 100.000 69 0 0 1899 1967 29555583 29555515 1.790000e-25 128.0
39 TraesCS6B01G238500 chr7D 100.000 69 0 0 1899 1967 78321390 78321458 1.790000e-25 128.0
40 TraesCS6B01G238500 chr7D 94.872 39 2 0 1871 1909 60705814 60705852 1.840000e-05 62.1
41 TraesCS6B01G238500 chr1B 100.000 69 0 0 1899 1967 683570296 683570228 1.790000e-25 128.0
42 TraesCS6B01G238500 chr4A 92.045 88 5 2 1899 1985 296664548 296664462 8.330000e-24 122.0
43 TraesCS6B01G238500 chr4A 88.235 85 8 2 3272 3355 542784556 542784473 3.910000e-17 100.0
44 TraesCS6B01G238500 chr5A 86.408 103 13 1 1845 1947 461486138 461486239 1.800000e-20 111.0
45 TraesCS6B01G238500 chr3A 87.059 85 9 2 3272 3355 432073242 432073325 1.820000e-15 95.3
46 TraesCS6B01G238500 chr1A 87.059 85 9 2 3272 3355 108409240 108409157 1.820000e-15 95.3
47 TraesCS6B01G238500 chr1A 86.905 84 9 2 3273 3355 449471298 449471216 6.530000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G238500 chr6B 415035674 415041796 6122 True 11308.000 11308 100.000000 1 6123 1 chr6B.!!$R2 6122
1 TraesCS6B01G238500 chr6D 266953857 266960487 6630 True 1512.000 3410 93.535833 38 6123 6 chr6D.!!$R1 6085
2 TraesCS6B01G238500 chr6A 379656048 379663605 7557 True 1135.875 2643 93.881500 38 6123 8 chr6A.!!$R2 6085
3 TraesCS6B01G238500 chr2D 430462036 430464748 2712 True 430.500 580 85.704500 998 5123 2 chr2D.!!$R2 4125
4 TraesCS6B01G238500 chr2A 555821306 555823956 2650 False 375.000 575 85.543333 1001 5123 3 chr2A.!!$F1 4122
5 TraesCS6B01G238500 chr2B 508248034 508251076 3042 True 427.500 568 85.313000 999 5123 2 chr2B.!!$R3 4124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 290 1.185618 TGTCGACCTTCACCTCCCTG 61.186 60.000 14.12 0.0 0.00 4.45 F
1554 1564 1.672737 CCGCACACTGCTCAATACAGA 60.673 52.381 0.00 0.0 42.25 3.41 F
1855 2249 0.031716 TAGCAGGTGAGAGCCATCCT 60.032 55.000 0.00 0.0 0.00 3.24 F
2897 3957 0.038166 GGATTGTGGGCCTGTCTTGA 59.962 55.000 4.53 0.0 0.00 3.02 F
3032 4092 0.613260 CTGTCCCGTCCCAAATCTGA 59.387 55.000 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2230 0.031716 AGGATGGCTCTCACCTGCTA 60.032 55.000 0.0 0.0 0.0 3.49 R
3032 4092 0.974010 CAAGTGGGCTGGGCATTGAT 60.974 55.000 0.0 0.0 0.0 2.57 R
3571 4665 1.200020 GGCACCACAAGCTGTACATTC 59.800 52.381 0.0 0.0 0.0 2.67 R
4291 5389 1.102978 AAACAGCGTGCTCAAGGTTT 58.897 45.000 0.0 0.0 0.0 3.27 R
5127 7042 2.290641 AGTCTCGAAAAGCACGCAATTT 59.709 40.909 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.916628 AAAGAGAGAATATAATTTCCTCTGCC 57.083 34.615 0.00 0.00 35.39 4.85
35 36 7.870426 AGAGAGAATATAATTTCCTCTGCCT 57.130 36.000 0.00 0.00 34.64 4.75
36 37 8.273923 AGAGAGAATATAATTTCCTCTGCCTT 57.726 34.615 0.00 0.00 34.64 4.35
86 88 1.671054 CCGTCCGACAATGCCAACT 60.671 57.895 0.00 0.00 0.00 3.16
123 125 3.542602 ACCCCACTCACCCCTCCT 61.543 66.667 0.00 0.00 0.00 3.69
126 128 2.122729 CCACTCACCCCTCCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
157 159 2.607771 CCAGCGTTGAACAAATCCCAAG 60.608 50.000 0.00 0.00 0.00 3.61
196 198 4.705110 TGAATTCAGGACCAGAACTTGA 57.295 40.909 3.38 0.00 0.00 3.02
224 226 2.686405 AGCGTACCTCGAATATGTGTCA 59.314 45.455 0.00 0.00 42.86 3.58
229 231 5.049336 CGTACCTCGAATATGTGTCATCTCT 60.049 44.000 0.00 0.00 42.86 3.10
235 237 7.334844 TCGAATATGTGTCATCTCTGTTACT 57.665 36.000 0.00 0.00 0.00 2.24
288 290 1.185618 TGTCGACCTTCACCTCCCTG 61.186 60.000 14.12 0.00 0.00 4.45
299 301 2.610519 CCTCCCTGGCTGGCTCTTT 61.611 63.158 4.64 0.00 0.00 2.52
324 326 2.594131 CCATCATCCATCAATGTGGCT 58.406 47.619 0.00 0.00 39.19 4.75
353 355 3.243002 CGAAGTAGAGGACCACCGTTATC 60.243 52.174 0.00 0.00 41.83 1.75
355 357 2.244252 AGTAGAGGACCACCGTTATCCT 59.756 50.000 0.00 0.58 45.84 3.24
389 391 4.367023 CTCGTCCCGAACCGGCAA 62.367 66.667 0.00 0.00 46.86 4.52
463 465 2.185350 CCGCTGCTCGATCCACTT 59.815 61.111 0.00 0.00 41.67 3.16
490 492 2.395988 AATGCTGTGGAGTGGCGACA 62.396 55.000 0.45 0.00 33.93 4.35
522 524 7.270779 GTTGGATAACCTCGGTAGATTAGTTT 58.729 38.462 0.00 0.00 37.04 2.66
767 774 5.615261 AGGAAAAGGGGGCAGAATATGTATA 59.385 40.000 0.00 0.00 0.00 1.47
769 776 6.780522 GGAAAAGGGGGCAGAATATGTATAAA 59.219 38.462 0.00 0.00 0.00 1.40
793 801 3.519510 CGGATGGGGAATATACATCACCT 59.480 47.826 9.46 0.00 41.20 4.00
829 838 2.017049 GCATACAACAGGGATGACACC 58.983 52.381 0.00 0.00 0.00 4.16
840 849 4.692625 CAGGGATGACACCGAATAATCATC 59.307 45.833 4.80 4.80 44.43 2.92
978 988 4.545706 GCCGATCGCATCCACCCA 62.546 66.667 10.32 0.00 37.47 4.51
1401 1411 3.071874 TCCCTCGTCAATTGCTTCAAT 57.928 42.857 0.00 0.00 35.39 2.57
1554 1564 1.672737 CCGCACACTGCTCAATACAGA 60.673 52.381 0.00 0.00 42.25 3.41
1597 1850 9.265901 CTGATGTAGTTTATGCTAGCTAATGTT 57.734 33.333 17.23 0.57 0.00 2.71
1601 1854 8.181573 TGTAGTTTATGCTAGCTAATGTTTTGC 58.818 33.333 17.23 0.00 0.00 3.68
1734 2123 4.944962 TGAAGCAACAATATTCCGACAG 57.055 40.909 0.00 0.00 0.00 3.51
1756 2145 6.972328 ACAGTATGCTTGTAACAAGTTTGTTG 59.028 34.615 17.94 4.87 45.95 3.33
1757 2146 7.893570 ACAGTATGCTTGTAACAAGTTTGTTGG 60.894 37.037 17.94 8.30 45.95 3.77
1788 2177 3.056607 GCGGGTTACTGAGTACTTGGTAA 60.057 47.826 13.83 13.83 0.00 2.85
1822 2216 9.746457 AATATAGGAAAAGAATTCTATGAGGCC 57.254 33.333 8.75 0.00 0.00 5.19
1823 2217 5.456921 AGGAAAAGAATTCTATGAGGCCA 57.543 39.130 8.75 0.00 0.00 5.36
1824 2218 5.444176 AGGAAAAGAATTCTATGAGGCCAG 58.556 41.667 8.75 0.00 0.00 4.85
1825 2219 4.582240 GGAAAAGAATTCTATGAGGCCAGG 59.418 45.833 8.75 0.00 0.00 4.45
1826 2220 4.870021 AAAGAATTCTATGAGGCCAGGT 57.130 40.909 8.75 0.00 0.00 4.00
1827 2221 4.429854 AAGAATTCTATGAGGCCAGGTC 57.570 45.455 8.75 0.00 0.00 3.85
1828 2222 3.663198 AGAATTCTATGAGGCCAGGTCT 58.337 45.455 6.06 0.00 0.00 3.85
1829 2223 3.645687 AGAATTCTATGAGGCCAGGTCTC 59.354 47.826 14.90 14.90 34.49 3.36
1833 2227 2.997315 TGAGGCCAGGTCTCACGG 60.997 66.667 20.67 0.00 39.51 4.94
1834 2228 3.775654 GAGGCCAGGTCTCACGGG 61.776 72.222 16.93 0.00 34.02 5.28
1835 2229 4.640690 AGGCCAGGTCTCACGGGT 62.641 66.667 5.01 0.00 0.00 5.28
1836 2230 3.637273 GGCCAGGTCTCACGGGTT 61.637 66.667 0.00 0.00 0.00 4.11
1837 2231 2.288025 GGCCAGGTCTCACGGGTTA 61.288 63.158 0.00 0.00 0.00 2.85
1838 2232 1.218316 GCCAGGTCTCACGGGTTAG 59.782 63.158 0.00 0.00 0.00 2.34
1839 2233 1.218316 CCAGGTCTCACGGGTTAGC 59.782 63.158 0.00 0.00 0.00 3.09
1840 2234 1.541310 CCAGGTCTCACGGGTTAGCA 61.541 60.000 0.00 0.00 0.00 3.49
1841 2235 0.108615 CAGGTCTCACGGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
1842 2236 1.218316 GGTCTCACGGGTTAGCAGG 59.782 63.158 0.00 0.00 0.00 4.85
1843 2237 1.542187 GGTCTCACGGGTTAGCAGGT 61.542 60.000 0.00 0.00 0.00 4.00
1844 2238 0.389948 GTCTCACGGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
1845 2239 0.541063 TCTCACGGGTTAGCAGGTGA 60.541 55.000 7.19 7.19 37.77 4.02
1846 2240 1.972198 TCACGGGTTAGCAGGTGAG 59.028 57.895 3.98 0.00 34.71 3.51
1847 2241 0.541063 TCACGGGTTAGCAGGTGAGA 60.541 55.000 3.98 0.00 34.71 3.27
1848 2242 0.108615 CACGGGTTAGCAGGTGAGAG 60.109 60.000 0.00 0.00 32.23 3.20
1849 2243 1.153549 CGGGTTAGCAGGTGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
1850 2244 1.222113 GGGTTAGCAGGTGAGAGCC 59.778 63.158 0.00 0.00 0.00 4.70
1851 2245 1.553690 GGGTTAGCAGGTGAGAGCCA 61.554 60.000 0.00 0.00 0.00 4.75
1852 2246 0.543749 GGTTAGCAGGTGAGAGCCAT 59.456 55.000 0.00 0.00 0.00 4.40
1853 2247 1.474143 GGTTAGCAGGTGAGAGCCATC 60.474 57.143 0.00 0.00 0.00 3.51
1854 2248 0.833287 TTAGCAGGTGAGAGCCATCC 59.167 55.000 0.00 0.00 0.00 3.51
1855 2249 0.031716 TAGCAGGTGAGAGCCATCCT 60.032 55.000 0.00 0.00 0.00 3.24
1856 2250 1.153208 GCAGGTGAGAGCCATCCTG 60.153 63.158 5.79 5.79 42.17 3.86
1857 2251 1.620739 GCAGGTGAGAGCCATCCTGA 61.621 60.000 13.26 0.00 42.00 3.86
1858 2252 1.129917 CAGGTGAGAGCCATCCTGAT 58.870 55.000 4.28 0.00 42.00 2.90
1859 2253 1.129917 AGGTGAGAGCCATCCTGATG 58.870 55.000 0.00 0.00 38.51 3.07
1872 2266 1.134007 TCCTGATGGATGACACATGGC 60.134 52.381 0.00 0.00 37.46 4.40
1873 2267 1.409101 CCTGATGGATGACACATGGCA 60.409 52.381 0.00 0.00 37.54 4.92
1875 2269 2.956333 CTGATGGATGACACATGGCATT 59.044 45.455 0.78 0.00 45.42 3.56
1876 2270 2.953648 TGATGGATGACACATGGCATTC 59.046 45.455 0.78 0.00 45.42 2.67
1877 2271 2.510928 TGGATGACACATGGCATTCA 57.489 45.000 4.43 4.43 46.54 2.57
1878 2272 2.093890 TGGATGACACATGGCATTCAC 58.906 47.619 4.43 0.00 43.95 3.18
1879 2273 2.093890 GGATGACACATGGCATTCACA 58.906 47.619 0.78 0.00 45.42 3.58
1880 2274 2.492881 GGATGACACATGGCATTCACAA 59.507 45.455 0.78 0.00 45.42 3.33
1881 2275 3.056678 GGATGACACATGGCATTCACAAA 60.057 43.478 0.78 0.00 45.42 2.83
1882 2276 4.382254 GGATGACACATGGCATTCACAAAT 60.382 41.667 0.78 0.00 45.42 2.32
1883 2277 4.177165 TGACACATGGCATTCACAAATC 57.823 40.909 0.00 0.00 0.00 2.17
1884 2278 3.573110 TGACACATGGCATTCACAAATCA 59.427 39.130 0.00 0.00 0.00 2.57
1885 2279 3.916761 ACACATGGCATTCACAAATCAC 58.083 40.909 0.00 0.00 0.00 3.06
1886 2280 3.321396 ACACATGGCATTCACAAATCACA 59.679 39.130 0.00 0.00 0.00 3.58
1887 2281 4.202233 ACACATGGCATTCACAAATCACAA 60.202 37.500 0.00 0.00 0.00 3.33
1888 2282 4.750598 CACATGGCATTCACAAATCACAAA 59.249 37.500 0.00 0.00 0.00 2.83
1889 2283 4.992319 ACATGGCATTCACAAATCACAAAG 59.008 37.500 0.00 0.00 0.00 2.77
1890 2284 3.391965 TGGCATTCACAAATCACAAAGC 58.608 40.909 0.00 0.00 0.00 3.51
1891 2285 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
1892 2286 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
1893 2287 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
1894 2288 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
1895 2289 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
1896 2290 6.034256 GCATTCACAAATCACAAAGCATCTAC 59.966 38.462 0.00 0.00 0.00 2.59
1897 2291 5.627499 TCACAAATCACAAAGCATCTACC 57.373 39.130 0.00 0.00 0.00 3.18
1898 2292 4.458989 TCACAAATCACAAAGCATCTACCC 59.541 41.667 0.00 0.00 0.00 3.69
1899 2293 3.763897 ACAAATCACAAAGCATCTACCCC 59.236 43.478 0.00 0.00 0.00 4.95
1900 2294 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
1901 2295 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
1902 2296 1.086696 CACAAAGCATCTACCCCACG 58.913 55.000 0.00 0.00 0.00 4.94
1903 2297 0.690762 ACAAAGCATCTACCCCACGT 59.309 50.000 0.00 0.00 0.00 4.49
1904 2298 1.086696 CAAAGCATCTACCCCACGTG 58.913 55.000 9.08 9.08 0.00 4.49
1905 2299 0.690762 AAAGCATCTACCCCACGTGT 59.309 50.000 15.65 0.00 0.00 4.49
1906 2300 0.249398 AAGCATCTACCCCACGTGTC 59.751 55.000 15.65 0.00 0.00 3.67
1907 2301 0.902984 AGCATCTACCCCACGTGTCA 60.903 55.000 15.65 0.00 0.00 3.58
1908 2302 0.178068 GCATCTACCCCACGTGTCAT 59.822 55.000 15.65 1.17 0.00 3.06
1909 2303 1.806623 GCATCTACCCCACGTGTCATC 60.807 57.143 15.65 0.00 0.00 2.92
1910 2304 1.120530 ATCTACCCCACGTGTCATCC 58.879 55.000 15.65 0.00 0.00 3.51
1911 2305 0.251877 TCTACCCCACGTGTCATCCA 60.252 55.000 15.65 0.00 0.00 3.41
1912 2306 0.830648 CTACCCCACGTGTCATCCAT 59.169 55.000 15.65 0.00 0.00 3.41
1913 2307 0.828022 TACCCCACGTGTCATCCATC 59.172 55.000 15.65 0.00 0.00 3.51
1914 2308 1.198094 ACCCCACGTGTCATCCATCA 61.198 55.000 15.65 0.00 0.00 3.07
1915 2309 0.462581 CCCCACGTGTCATCCATCAG 60.463 60.000 15.65 0.00 0.00 2.90
1916 2310 0.462581 CCCACGTGTCATCCATCAGG 60.463 60.000 15.65 0.00 0.00 3.86
1917 2311 0.462581 CCACGTGTCATCCATCAGGG 60.463 60.000 15.65 0.00 34.83 4.45
1918 2312 1.091771 CACGTGTCATCCATCAGGGC 61.092 60.000 7.58 0.00 36.21 5.19
1919 2313 1.884464 CGTGTCATCCATCAGGGCG 60.884 63.158 0.00 0.00 36.21 6.13
1920 2314 1.524621 GTGTCATCCATCAGGGCGG 60.525 63.158 0.00 0.00 36.21 6.13
1921 2315 2.111878 GTCATCCATCAGGGCGGG 59.888 66.667 0.00 0.00 36.21 6.13
1922 2316 2.366837 TCATCCATCAGGGCGGGT 60.367 61.111 0.00 0.00 36.21 5.28
1923 2317 2.111878 CATCCATCAGGGCGGGTC 59.888 66.667 0.00 0.00 36.21 4.46
1924 2318 2.040464 ATCCATCAGGGCGGGTCT 60.040 61.111 0.00 0.00 36.21 3.85
1925 2319 2.143419 ATCCATCAGGGCGGGTCTC 61.143 63.158 0.00 0.00 36.21 3.36
1926 2320 2.896677 ATCCATCAGGGCGGGTCTCA 62.897 60.000 0.00 0.00 36.21 3.27
1927 2321 2.187946 CATCAGGGCGGGTCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
1928 2322 3.083997 ATCAGGGCGGGTCTCACC 61.084 66.667 0.00 0.00 37.60 4.02
1929 2323 3.625632 ATCAGGGCGGGTCTCACCT 62.626 63.158 0.00 0.00 38.64 4.00
1935 2329 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
1936 2330 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
1937 2331 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
1938 2332 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
1939 2333 0.389948 GGTCTCACCTGCTAACCGTG 60.390 60.000 0.00 0.00 34.73 4.94
1940 2334 0.601558 GTCTCACCTGCTAACCGTGA 59.398 55.000 0.00 0.00 35.34 4.35
1941 2335 3.425578 CTCACCTGCTAACCGTGAG 57.574 57.895 2.35 2.35 45.33 3.51
1942 2336 3.045518 TCACCTGCTAACCGTGAGA 57.954 52.632 0.00 0.00 32.85 3.27
1943 2337 0.601558 TCACCTGCTAACCGTGAGAC 59.398 55.000 0.00 0.00 32.85 3.36
1944 2338 0.389948 CACCTGCTAACCGTGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
1945 2339 0.542232 ACCTGCTAACCGTGAGACCT 60.542 55.000 0.00 0.00 0.00 3.85
1946 2340 0.108615 CCTGCTAACCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
1947 2341 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.000 0.00 0.00 0.00 4.45
1948 2342 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
1949 2343 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
1950 2344 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
2047 2441 2.862541 CTGAGTTCATGGGTTGTTGGA 58.137 47.619 0.00 0.00 0.00 3.53
2136 2848 5.533903 ACTGAATATGATTGCCATGAGGTTC 59.466 40.000 0.00 0.00 36.71 3.62
2268 2980 6.936900 ACATGTAGCAATGTTAGGATGATACC 59.063 38.462 0.00 0.00 37.50 2.73
2364 3076 2.277084 ACGCGAGACACCATTATTTCC 58.723 47.619 15.93 0.00 0.00 3.13
2540 3252 1.340405 CCTAAGTCTGGCTTGCCACAT 60.340 52.381 10.65 0.00 38.05 3.21
2569 3281 6.566942 TACACAAAAATGTGGCTTTAGTAGCG 60.567 38.462 13.00 0.00 43.59 4.26
2570 3282 8.856439 TACACAAAAATGTGGCTTTAGTAGCGT 61.856 37.037 13.00 0.00 43.59 5.07
2703 3762 9.886132 AAAGGACGTTTATCATGTCTATAAACT 57.114 29.630 18.77 10.74 43.15 2.66
2897 3957 0.038166 GGATTGTGGGCCTGTCTTGA 59.962 55.000 4.53 0.00 0.00 3.02
2907 3967 3.431486 GGGCCTGTCTTGATCTAGAACTG 60.431 52.174 8.50 7.32 0.00 3.16
2927 3987 3.149981 TGACAATGCCACAATTTACCGA 58.850 40.909 0.00 0.00 0.00 4.69
2930 3990 3.319405 ACAATGCCACAATTTACCGAACA 59.681 39.130 0.00 0.00 0.00 3.18
2988 4048 4.942761 ATTGAAGACACAAGTTGGCAAT 57.057 36.364 1.92 4.59 34.40 3.56
3032 4092 0.613260 CTGTCCCGTCCCAAATCTGA 59.387 55.000 0.00 0.00 0.00 3.27
3074 4134 7.364522 TGTAGAAAGCAGTCATTTCATGTAC 57.635 36.000 0.00 0.00 38.79 2.90
3194 4255 1.033746 ATTGGGCAAGTGAGCATCCG 61.034 55.000 0.00 0.00 35.83 4.18
3218 4279 5.048713 GCTAATGTGCTGGGGTATTACAATC 60.049 44.000 0.00 0.00 0.00 2.67
3219 4280 4.796110 ATGTGCTGGGGTATTACAATCT 57.204 40.909 0.00 0.00 0.00 2.40
3500 4561 1.207089 TGGTTATGTCGCCCTCTCAAG 59.793 52.381 0.00 0.00 0.00 3.02
3702 4797 0.919710 AGTGACATTTCCCCTAGGGC 59.080 55.000 23.84 7.37 43.94 5.19
3756 4852 3.616219 TGGCATATACTCGGTGCTTTTT 58.384 40.909 0.00 0.00 38.83 1.94
3798 4894 6.180472 CCCTGTCATTGGAACTATAGTTGTT 58.820 40.000 22.68 0.00 38.56 2.83
3839 4935 3.683365 TGCACTGTATTCTGCTTCTGA 57.317 42.857 0.00 0.00 34.29 3.27
3903 5000 7.264373 TGTTGTCTGAAGGATTTCTTTTCTC 57.736 36.000 0.00 0.00 35.50 2.87
4258 5355 5.970317 TGTTCAATGTTCATCAAGCTGAT 57.030 34.783 0.00 0.00 37.65 2.90
4493 5592 8.622948 TGTCCCAAAGTTTACAAAACAATTTT 57.377 26.923 5.42 0.00 0.00 1.82
4999 6914 2.610232 GCATTTGCAGTTCCCGTCATTT 60.610 45.455 0.00 0.00 41.59 2.32
5127 7042 0.525761 GCCAAACTTGATTAGCCGCA 59.474 50.000 0.00 0.00 0.00 5.69
5303 7218 5.796424 AATTTGAGCAACTCACCAGAAAT 57.204 34.783 0.00 0.00 40.46 2.17
5325 7242 8.601845 AAATTTGCCAAGTTATAACTGGAAAC 57.398 30.769 25.70 15.02 39.66 2.78
5326 7243 6.716934 TTTGCCAAGTTATAACTGGAAACA 57.283 33.333 25.70 16.76 39.66 2.83
5327 7244 5.699097 TGCCAAGTTATAACTGGAAACAC 57.301 39.130 25.70 14.53 39.66 3.32
5328 7245 4.521256 TGCCAAGTTATAACTGGAAACACC 59.479 41.667 25.70 14.07 39.66 4.16
5341 7258 4.331968 TGGAAACACCAAGTTATAGCTGG 58.668 43.478 0.00 0.00 46.75 4.85
5342 7259 4.042311 TGGAAACACCAAGTTATAGCTGGA 59.958 41.667 0.00 0.00 46.75 3.86
5343 7260 5.007682 GGAAACACCAAGTTATAGCTGGAA 58.992 41.667 0.00 0.00 40.26 3.53
5344 7261 5.475564 GGAAACACCAAGTTATAGCTGGAAA 59.524 40.000 0.00 0.00 40.26 3.13
5386 7303 6.115446 AGAAACGATCTCTTTTGCATCCATA 58.885 36.000 0.00 0.00 30.46 2.74
5387 7304 5.998454 AACGATCTCTTTTGCATCCATAG 57.002 39.130 0.00 0.00 0.00 2.23
5388 7305 3.812053 ACGATCTCTTTTGCATCCATAGC 59.188 43.478 0.00 0.00 0.00 2.97
5389 7306 4.063689 CGATCTCTTTTGCATCCATAGCT 58.936 43.478 0.00 0.00 0.00 3.32
5390 7307 4.083961 CGATCTCTTTTGCATCCATAGCTG 60.084 45.833 0.00 0.00 0.00 4.24
5395 7312 4.337274 TCTTTTGCATCCATAGCTGATGTG 59.663 41.667 12.60 0.06 41.32 3.21
5396 7313 3.564053 TTGCATCCATAGCTGATGTGA 57.436 42.857 12.60 5.92 41.32 3.58
5403 7323 6.669278 CATCCATAGCTGATGTGAGAATTTG 58.331 40.000 0.00 0.00 35.86 2.32
5411 7331 4.168014 TGATGTGAGAATTTGCGCATTTC 58.832 39.130 12.75 17.70 35.56 2.17
5421 7345 5.670149 ATTTGCGCATTTCAAATGTTTCA 57.330 30.435 12.75 4.81 41.15 2.69
5430 7354 9.253275 CGCATTTCAAATGTTTCATGAATTAAC 57.747 29.630 9.40 5.38 33.45 2.01
5432 7356 9.253275 CATTTCAAATGTTTCATGAATTAACGC 57.747 29.630 9.40 0.00 33.45 4.84
5434 7358 6.450545 TCAAATGTTTCATGAATTAACGCCA 58.549 32.000 9.40 0.00 0.00 5.69
5475 7399 5.120363 CAGTAATCAGATTGATGCTCCGATG 59.880 44.000 5.85 0.00 37.15 3.84
5476 7400 1.875009 TCAGATTGATGCTCCGATGC 58.125 50.000 0.00 0.00 0.00 3.91
5541 7469 3.848726 TCGTTTCGTATAAGGGGTTCAC 58.151 45.455 0.00 0.00 0.00 3.18
5581 7509 7.384660 TGTTAATTGATCAACAGAAAATGTGGC 59.615 33.333 11.07 0.00 43.00 5.01
5585 7513 1.612950 TCAACAGAAAATGTGGCGCAT 59.387 42.857 10.83 7.93 43.00 4.73
5586 7514 1.722464 CAACAGAAAATGTGGCGCATG 59.278 47.619 15.25 5.64 43.00 4.06
5607 7535 2.287103 GCCTTATAAAAGCCGGACGAAG 59.713 50.000 5.05 0.00 0.00 3.79
5608 7536 2.870411 CCTTATAAAAGCCGGACGAAGG 59.130 50.000 5.05 3.39 0.00 3.46
5640 7568 5.057149 AGTCCATATACAAACGGATTCTGC 58.943 41.667 0.00 0.00 0.00 4.26
5647 7575 1.597663 CAAACGGATTCTGCGATACCC 59.402 52.381 0.00 0.00 34.49 3.69
5663 7591 1.058284 ACCCGTTGCACCCTTTAGTA 58.942 50.000 0.00 0.00 0.00 1.82
5743 8866 8.474831 TCATGCACATATATGGTAGTATGTACC 58.525 37.037 16.96 0.11 38.98 3.34
5792 8915 7.820044 AAGCGTTTGTGTTCTTAAAAATTCA 57.180 28.000 0.00 0.00 0.00 2.57
5793 8916 7.449934 AGCGTTTGTGTTCTTAAAAATTCAG 57.550 32.000 0.00 0.00 0.00 3.02
5794 8917 7.033185 AGCGTTTGTGTTCTTAAAAATTCAGT 58.967 30.769 0.00 0.00 0.00 3.41
5795 8918 7.544217 AGCGTTTGTGTTCTTAAAAATTCAGTT 59.456 29.630 0.00 0.00 0.00 3.16
5796 8919 8.800031 GCGTTTGTGTTCTTAAAAATTCAGTTA 58.200 29.630 0.00 0.00 0.00 2.24
5844 8967 8.603181 ACAACTTTTCATGCACTATTTGTTTTC 58.397 29.630 0.00 0.00 0.00 2.29
5845 8968 7.713764 ACTTTTCATGCACTATTTGTTTTCC 57.286 32.000 0.00 0.00 0.00 3.13
5847 8970 5.697473 TTCATGCACTATTTGTTTTCCGA 57.303 34.783 0.00 0.00 0.00 4.55
5848 8971 5.295431 TCATGCACTATTTGTTTTCCGAG 57.705 39.130 0.00 0.00 0.00 4.63
5849 8972 5.000591 TCATGCACTATTTGTTTTCCGAGA 58.999 37.500 0.00 0.00 0.00 4.04
5850 8973 4.742438 TGCACTATTTGTTTTCCGAGAC 57.258 40.909 0.00 0.00 0.00 3.36
5851 8974 4.130857 TGCACTATTTGTTTTCCGAGACA 58.869 39.130 0.00 0.00 0.00 3.41
5853 8976 4.024387 GCACTATTTGTTTTCCGAGACACA 60.024 41.667 0.00 0.00 0.00 3.72
5854 8977 5.334879 GCACTATTTGTTTTCCGAGACACAT 60.335 40.000 0.00 0.00 0.00 3.21
5855 8978 6.128391 GCACTATTTGTTTTCCGAGACACATA 60.128 38.462 0.00 0.00 0.00 2.29
5856 8979 7.234384 CACTATTTGTTTTCCGAGACACATAC 58.766 38.462 0.00 0.00 0.00 2.39
5857 8980 6.932400 ACTATTTGTTTTCCGAGACACATACA 59.068 34.615 0.00 0.00 0.00 2.29
5859 8982 6.438259 TTTGTTTTCCGAGACACATACAAA 57.562 33.333 0.00 0.00 33.39 2.83
5860 8983 6.438259 TTGTTTTCCGAGACACATACAAAA 57.562 33.333 0.00 0.00 0.00 2.44
5861 8984 6.438259 TGTTTTCCGAGACACATACAAAAA 57.562 33.333 0.00 0.00 0.00 1.94
5862 8985 7.033530 TGTTTTCCGAGACACATACAAAAAT 57.966 32.000 0.00 0.00 0.00 1.82
5863 8986 8.155821 TGTTTTCCGAGACACATACAAAAATA 57.844 30.769 0.00 0.00 0.00 1.40
5866 8989 4.327898 TCCGAGACACATACAAAAATACGC 59.672 41.667 0.00 0.00 0.00 4.42
5867 8990 4.252902 CGAGACACATACAAAAATACGCG 58.747 43.478 3.53 3.53 0.00 6.01
5869 8992 5.600908 AGACACATACAAAAATACGCGTT 57.399 34.783 20.78 1.87 0.00 4.84
5870 8993 5.992729 AGACACATACAAAAATACGCGTTT 58.007 33.333 20.78 6.76 0.00 3.60
5910 9477 7.964545 AAAAGAGACACATGTTTTTACGAAC 57.035 32.000 0.00 0.00 0.00 3.95
5996 9563 2.155197 AACTCTGGCCCATCCAACCC 62.155 60.000 0.00 0.00 46.01 4.11
6042 9609 3.301274 CCTAACAAAAACCACCCCTTGA 58.699 45.455 0.00 0.00 0.00 3.02
6069 9640 1.211949 AGTCTCTTCCTCTCTCTCCCG 59.788 57.143 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.348476 GGCAGAGGAAATTATATTCTCTCTTTT 57.652 33.333 0.00 0.00 36.07 2.27
9 10 8.722422 AGGCAGAGGAAATTATATTCTCTCTTT 58.278 33.333 0.00 0.00 36.07 2.52
10 11 8.273923 AGGCAGAGGAAATTATATTCTCTCTT 57.726 34.615 0.00 0.00 36.07 2.85
11 12 7.870426 AGGCAGAGGAAATTATATTCTCTCT 57.130 36.000 0.00 0.00 37.40 3.10
12 13 8.153550 TGAAGGCAGAGGAAATTATATTCTCTC 58.846 37.037 0.00 0.00 31.91 3.20
13 14 8.038862 TGAAGGCAGAGGAAATTATATTCTCT 57.961 34.615 0.00 0.00 0.00 3.10
14 15 8.563732 GTTGAAGGCAGAGGAAATTATATTCTC 58.436 37.037 0.00 0.00 0.00 2.87
15 16 8.277918 AGTTGAAGGCAGAGGAAATTATATTCT 58.722 33.333 0.00 0.00 0.00 2.40
16 17 8.348507 CAGTTGAAGGCAGAGGAAATTATATTC 58.651 37.037 0.00 0.00 0.00 1.75
17 18 7.201857 GCAGTTGAAGGCAGAGGAAATTATATT 60.202 37.037 0.00 0.00 0.00 1.28
18 19 6.264067 GCAGTTGAAGGCAGAGGAAATTATAT 59.736 38.462 0.00 0.00 0.00 0.86
19 20 5.590259 GCAGTTGAAGGCAGAGGAAATTATA 59.410 40.000 0.00 0.00 0.00 0.98
20 21 4.400567 GCAGTTGAAGGCAGAGGAAATTAT 59.599 41.667 0.00 0.00 0.00 1.28
21 22 3.758554 GCAGTTGAAGGCAGAGGAAATTA 59.241 43.478 0.00 0.00 0.00 1.40
22 23 2.560105 GCAGTTGAAGGCAGAGGAAATT 59.440 45.455 0.00 0.00 0.00 1.82
23 24 2.165998 GCAGTTGAAGGCAGAGGAAAT 58.834 47.619 0.00 0.00 0.00 2.17
24 25 1.609208 GCAGTTGAAGGCAGAGGAAA 58.391 50.000 0.00 0.00 0.00 3.13
25 26 0.250901 GGCAGTTGAAGGCAGAGGAA 60.251 55.000 0.00 0.00 0.00 3.36
26 27 1.376466 GGCAGTTGAAGGCAGAGGA 59.624 57.895 0.00 0.00 0.00 3.71
27 28 1.676967 GGGCAGTTGAAGGCAGAGG 60.677 63.158 0.00 0.00 0.00 3.69
28 29 0.323178 ATGGGCAGTTGAAGGCAGAG 60.323 55.000 0.00 0.00 0.00 3.35
29 30 0.991146 TATGGGCAGTTGAAGGCAGA 59.009 50.000 0.00 0.00 0.00 4.26
30 31 1.386533 CTATGGGCAGTTGAAGGCAG 58.613 55.000 0.00 0.00 0.00 4.85
31 32 0.680921 GCTATGGGCAGTTGAAGGCA 60.681 55.000 0.00 0.00 41.35 4.75
32 33 2.110296 GCTATGGGCAGTTGAAGGC 58.890 57.895 0.00 0.00 41.35 4.35
123 125 2.203112 GCTGGCAGCGATGATGGA 60.203 61.111 25.47 0.00 0.00 3.41
157 159 4.336889 TTCATGATAGGGATTCACGGTC 57.663 45.455 0.00 0.00 0.00 4.79
196 198 0.530744 TTCGAGGTACGCTGCATCTT 59.469 50.000 0.00 0.00 42.26 2.40
235 237 5.277011 CGCGCATTTTCATCAATTCTCTCTA 60.277 40.000 8.75 0.00 0.00 2.43
245 247 2.100023 CGCCGCGCATTTTCATCA 59.900 55.556 8.75 0.00 0.00 3.07
299 301 2.223745 CATTGATGGATGATGGCGTCA 58.776 47.619 12.53 12.53 42.06 4.35
324 326 3.624861 GTGGTCCTCTACTTCGATTCGTA 59.375 47.826 5.89 0.00 0.00 3.43
409 411 1.216178 GGTCGTCGAATCCGGGAAA 59.784 57.895 0.00 0.00 36.24 3.13
461 463 1.134521 TCCACAGCATTAGGGCGTAAG 60.135 52.381 5.82 0.06 39.27 2.34
463 465 0.464036 CTCCACAGCATTAGGGCGTA 59.536 55.000 0.00 0.00 39.27 4.42
522 524 3.610976 TGAGCCCTCACGCGAATA 58.389 55.556 15.93 0.00 34.14 1.75
637 643 9.391006 TCATTTAGCTGACGTTTTCCTATAAAT 57.609 29.630 0.00 0.00 0.00 1.40
641 647 6.170506 TGTCATTTAGCTGACGTTTTCCTAT 58.829 36.000 0.00 0.00 46.89 2.57
683 690 3.682858 CCATCGTCGTTTACATCCAGTTT 59.317 43.478 0.00 0.00 0.00 2.66
742 749 3.225940 CATATTCTGCCCCCTTTTCCTC 58.774 50.000 0.00 0.00 0.00 3.71
767 774 6.180472 GTGATGTATATTCCCCATCCGATTT 58.820 40.000 0.00 0.00 35.26 2.17
769 776 4.164221 GGTGATGTATATTCCCCATCCGAT 59.836 45.833 0.00 0.00 35.26 4.18
793 801 9.409312 CTGTTGTATGCAATCATTTTCTGTTAA 57.591 29.630 0.00 0.00 36.92 2.01
903 912 0.846870 AGGAGAAGGAAAGGGGTGGG 60.847 60.000 0.00 0.00 0.00 4.61
978 988 0.252103 TCAGTCCGGCTAGGGTTTCT 60.252 55.000 0.00 0.00 41.52 2.52
1554 1564 4.525487 ACATCAGCAAGGTCAATGATTGTT 59.475 37.500 4.93 0.00 30.09 2.83
1597 1850 6.992123 AGTATATTCGATCACAATCCAGCAAA 59.008 34.615 0.00 0.00 0.00 3.68
1601 1854 7.953158 AACAGTATATTCGATCACAATCCAG 57.047 36.000 0.00 0.00 0.00 3.86
1731 2120 6.693315 ACAAACTTGTTACAAGCATACTGT 57.307 33.333 23.20 15.68 38.47 3.55
1756 2145 4.117685 CTCAGTAACCCGCAGTAAATACC 58.882 47.826 0.00 0.00 0.00 2.73
1757 2146 4.752146 ACTCAGTAACCCGCAGTAAATAC 58.248 43.478 0.00 0.00 0.00 1.89
1798 2192 8.275187 TGGCCTCATAGAATTCTTTTCCTATA 57.725 34.615 14.36 0.00 0.00 1.31
1799 2193 7.154191 TGGCCTCATAGAATTCTTTTCCTAT 57.846 36.000 14.36 0.00 0.00 2.57
1800 2194 6.409695 CCTGGCCTCATAGAATTCTTTTCCTA 60.410 42.308 14.36 0.00 0.00 2.94
1801 2195 5.444176 CTGGCCTCATAGAATTCTTTTCCT 58.556 41.667 14.36 0.00 0.00 3.36
1802 2196 4.582240 CCTGGCCTCATAGAATTCTTTTCC 59.418 45.833 14.36 7.46 0.00 3.13
1803 2197 5.196695 ACCTGGCCTCATAGAATTCTTTTC 58.803 41.667 14.36 0.00 0.00 2.29
1804 2198 5.044550 AGACCTGGCCTCATAGAATTCTTTT 60.045 40.000 14.36 0.00 0.00 2.27
1805 2199 4.476479 AGACCTGGCCTCATAGAATTCTTT 59.524 41.667 14.36 2.41 0.00 2.52
1806 2200 4.043596 AGACCTGGCCTCATAGAATTCTT 58.956 43.478 14.36 0.00 0.00 2.52
1807 2201 3.645687 GAGACCTGGCCTCATAGAATTCT 59.354 47.826 13.56 13.56 0.00 2.40
1808 2202 3.389329 TGAGACCTGGCCTCATAGAATTC 59.611 47.826 8.78 0.00 35.89 2.17
1809 2203 3.135530 GTGAGACCTGGCCTCATAGAATT 59.864 47.826 15.96 0.00 41.98 2.17
1810 2204 2.703007 GTGAGACCTGGCCTCATAGAAT 59.297 50.000 15.96 0.00 41.98 2.40
1811 2205 2.111384 GTGAGACCTGGCCTCATAGAA 58.889 52.381 15.96 0.00 41.98 2.10
1812 2206 1.781786 GTGAGACCTGGCCTCATAGA 58.218 55.000 15.96 0.00 41.98 1.98
1813 2207 0.387202 CGTGAGACCTGGCCTCATAG 59.613 60.000 15.96 9.58 41.98 2.23
1814 2208 1.043116 CCGTGAGACCTGGCCTCATA 61.043 60.000 15.96 0.00 41.98 2.15
1815 2209 2.362369 CCGTGAGACCTGGCCTCAT 61.362 63.158 15.96 0.00 41.98 2.90
1816 2210 2.997315 CCGTGAGACCTGGCCTCA 60.997 66.667 8.78 8.78 38.24 3.86
1817 2211 3.775654 CCCGTGAGACCTGGCCTC 61.776 72.222 3.32 2.68 0.00 4.70
1818 2212 2.741878 TAACCCGTGAGACCTGGCCT 62.742 60.000 3.32 0.00 0.00 5.19
1819 2213 2.240162 CTAACCCGTGAGACCTGGCC 62.240 65.000 0.00 0.00 0.00 5.36
1820 2214 1.218316 CTAACCCGTGAGACCTGGC 59.782 63.158 0.00 0.00 0.00 4.85
1821 2215 1.218316 GCTAACCCGTGAGACCTGG 59.782 63.158 0.00 0.00 0.00 4.45
1822 2216 0.108615 CTGCTAACCCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
1823 2217 1.258445 CCTGCTAACCCGTGAGACCT 61.258 60.000 0.00 0.00 0.00 3.85
1824 2218 1.218316 CCTGCTAACCCGTGAGACC 59.782 63.158 0.00 0.00 0.00 3.85
1825 2219 0.389948 CACCTGCTAACCCGTGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
1826 2220 0.541063 TCACCTGCTAACCCGTGAGA 60.541 55.000 0.00 0.00 31.80 3.27
1827 2221 0.108615 CTCACCTGCTAACCCGTGAG 60.109 60.000 2.01 2.01 44.38 3.51
1828 2222 0.541063 TCTCACCTGCTAACCCGTGA 60.541 55.000 0.00 0.00 34.26 4.35
1829 2223 0.108615 CTCTCACCTGCTAACCCGTG 60.109 60.000 0.00 0.00 0.00 4.94
1830 2224 1.889530 GCTCTCACCTGCTAACCCGT 61.890 60.000 0.00 0.00 0.00 5.28
1831 2225 1.153549 GCTCTCACCTGCTAACCCG 60.154 63.158 0.00 0.00 0.00 5.28
1832 2226 1.222113 GGCTCTCACCTGCTAACCC 59.778 63.158 0.00 0.00 0.00 4.11
1833 2227 0.543749 ATGGCTCTCACCTGCTAACC 59.456 55.000 0.00 0.00 0.00 2.85
1834 2228 1.474143 GGATGGCTCTCACCTGCTAAC 60.474 57.143 0.00 0.00 0.00 2.34
1835 2229 0.833287 GGATGGCTCTCACCTGCTAA 59.167 55.000 0.00 0.00 0.00 3.09
1836 2230 0.031716 AGGATGGCTCTCACCTGCTA 60.032 55.000 0.00 0.00 0.00 3.49
1837 2231 1.306825 AGGATGGCTCTCACCTGCT 60.307 57.895 0.00 0.00 0.00 4.24
1838 2232 1.153208 CAGGATGGCTCTCACCTGC 60.153 63.158 0.00 0.00 42.30 4.85
1840 2234 1.129917 CATCAGGATGGCTCTCACCT 58.870 55.000 1.25 0.00 36.16 4.00
1841 2235 3.702147 CATCAGGATGGCTCTCACC 57.298 57.895 1.25 0.00 36.16 4.02
1853 2247 1.315690 GCCATGTGTCATCCATCAGG 58.684 55.000 0.00 0.00 0.00 3.86
1854 2248 2.047002 TGCCATGTGTCATCCATCAG 57.953 50.000 0.00 0.00 0.00 2.90
1855 2249 2.740506 ATGCCATGTGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
1856 2250 2.953648 TGAATGCCATGTGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
1857 2251 2.691526 GTGAATGCCATGTGTCATCCAT 59.308 45.455 0.00 0.00 0.00 3.41
1858 2252 2.093890 GTGAATGCCATGTGTCATCCA 58.906 47.619 0.00 0.00 0.00 3.41
1859 2253 2.093890 TGTGAATGCCATGTGTCATCC 58.906 47.619 0.00 0.00 0.00 3.51
1860 2254 3.853831 TTGTGAATGCCATGTGTCATC 57.146 42.857 0.00 0.00 0.00 2.92
1861 2255 4.221041 TGATTTGTGAATGCCATGTGTCAT 59.779 37.500 0.00 0.00 0.00 3.06
1862 2256 3.573110 TGATTTGTGAATGCCATGTGTCA 59.427 39.130 0.00 0.00 0.00 3.58
1863 2257 3.922240 GTGATTTGTGAATGCCATGTGTC 59.078 43.478 0.00 0.00 0.00 3.67
1864 2258 3.321396 TGTGATTTGTGAATGCCATGTGT 59.679 39.130 0.00 0.00 0.00 3.72
1865 2259 3.915536 TGTGATTTGTGAATGCCATGTG 58.084 40.909 0.00 0.00 0.00 3.21
1866 2260 4.603989 TTGTGATTTGTGAATGCCATGT 57.396 36.364 0.00 0.00 0.00 3.21
1867 2261 4.142988 GCTTTGTGATTTGTGAATGCCATG 60.143 41.667 0.00 0.00 0.00 3.66
1868 2262 3.998341 GCTTTGTGATTTGTGAATGCCAT 59.002 39.130 0.00 0.00 0.00 4.40
1869 2263 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
1870 2264 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
1871 2265 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
1872 2266 6.529125 GGTAGATGCTTTGTGATTTGTGAATG 59.471 38.462 0.00 0.00 0.00 2.67
1873 2267 6.350445 GGGTAGATGCTTTGTGATTTGTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
1874 2268 5.048083 GGGTAGATGCTTTGTGATTTGTGAA 60.048 40.000 0.00 0.00 0.00 3.18
1875 2269 4.458989 GGGTAGATGCTTTGTGATTTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
1876 2270 4.380867 GGGGTAGATGCTTTGTGATTTGTG 60.381 45.833 0.00 0.00 0.00 3.33
1877 2271 3.763897 GGGGTAGATGCTTTGTGATTTGT 59.236 43.478 0.00 0.00 0.00 2.83
1878 2272 3.763360 TGGGGTAGATGCTTTGTGATTTG 59.237 43.478 0.00 0.00 0.00 2.32
1879 2273 3.763897 GTGGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
1880 2274 3.356290 GTGGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
1881 2275 2.680805 CGTGGGGTAGATGCTTTGTGAT 60.681 50.000 0.00 0.00 0.00 3.06
1882 2276 1.338674 CGTGGGGTAGATGCTTTGTGA 60.339 52.381 0.00 0.00 0.00 3.58
1883 2277 1.086696 CGTGGGGTAGATGCTTTGTG 58.913 55.000 0.00 0.00 0.00 3.33
1884 2278 0.690762 ACGTGGGGTAGATGCTTTGT 59.309 50.000 0.00 0.00 0.00 2.83
1885 2279 1.086696 CACGTGGGGTAGATGCTTTG 58.913 55.000 7.95 0.00 0.00 2.77
1886 2280 0.690762 ACACGTGGGGTAGATGCTTT 59.309 50.000 21.57 0.00 0.00 3.51
1887 2281 0.249398 GACACGTGGGGTAGATGCTT 59.751 55.000 21.57 0.00 0.00 3.91
1888 2282 0.902984 TGACACGTGGGGTAGATGCT 60.903 55.000 21.57 0.00 0.00 3.79
1889 2283 0.178068 ATGACACGTGGGGTAGATGC 59.822 55.000 21.57 0.00 0.00 3.91
1890 2284 1.202533 GGATGACACGTGGGGTAGATG 60.203 57.143 21.57 0.00 0.00 2.90
1891 2285 1.120530 GGATGACACGTGGGGTAGAT 58.879 55.000 21.57 0.00 0.00 1.98
1892 2286 0.251877 TGGATGACACGTGGGGTAGA 60.252 55.000 21.57 0.00 0.00 2.59
1893 2287 0.830648 ATGGATGACACGTGGGGTAG 59.169 55.000 21.57 0.00 0.00 3.18
1894 2288 0.828022 GATGGATGACACGTGGGGTA 59.172 55.000 21.57 3.05 0.00 3.69
1895 2289 1.198094 TGATGGATGACACGTGGGGT 61.198 55.000 21.57 4.38 0.00 4.95
1896 2290 0.462581 CTGATGGATGACACGTGGGG 60.463 60.000 21.57 0.00 0.00 4.96
1897 2291 0.462581 CCTGATGGATGACACGTGGG 60.463 60.000 21.57 2.98 34.57 4.61
1898 2292 0.462581 CCCTGATGGATGACACGTGG 60.463 60.000 21.57 1.66 35.39 4.94
1899 2293 1.091771 GCCCTGATGGATGACACGTG 61.092 60.000 15.48 15.48 35.39 4.49
1900 2294 1.221840 GCCCTGATGGATGACACGT 59.778 57.895 0.00 0.00 35.39 4.49
1901 2295 1.884464 CGCCCTGATGGATGACACG 60.884 63.158 0.00 0.00 35.39 4.49
1902 2296 1.524621 CCGCCCTGATGGATGACAC 60.525 63.158 0.00 0.00 35.39 3.67
1903 2297 2.745308 CCCGCCCTGATGGATGACA 61.745 63.158 0.00 0.00 35.39 3.58
1904 2298 2.111878 CCCGCCCTGATGGATGAC 59.888 66.667 0.00 0.00 35.39 3.06
1905 2299 2.366837 ACCCGCCCTGATGGATGA 60.367 61.111 0.00 0.00 35.39 2.92
1906 2300 2.111878 GACCCGCCCTGATGGATG 59.888 66.667 0.00 0.00 35.39 3.51
1907 2301 2.040464 AGACCCGCCCTGATGGAT 60.040 61.111 0.00 0.00 35.39 3.41
1908 2302 2.764128 GAGACCCGCCCTGATGGA 60.764 66.667 0.00 0.00 35.39 3.41
1909 2303 3.083349 TGAGACCCGCCCTGATGG 61.083 66.667 0.00 0.00 37.09 3.51
1910 2304 2.187946 GTGAGACCCGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
1911 2305 3.083997 GGTGAGACCCGCCCTGAT 61.084 66.667 0.00 0.00 39.55 2.90
1912 2306 4.316823 AGGTGAGACCCGCCCTGA 62.317 66.667 0.00 0.00 46.65 3.86
1913 2307 4.087892 CAGGTGAGACCCGCCCTG 62.088 72.222 0.00 0.00 46.65 4.45
1916 2310 2.656069 TTAGCAGGTGAGACCCGCC 61.656 63.158 0.00 0.00 42.60 6.13
1917 2311 1.448013 GTTAGCAGGTGAGACCCGC 60.448 63.158 0.00 0.00 41.94 6.13
1918 2312 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
1919 2313 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
1920 2314 0.389948 CACGGTTAGCAGGTGAGACC 60.390 60.000 0.00 0.00 38.99 3.85
1921 2315 0.601558 TCACGGTTAGCAGGTGAGAC 59.398 55.000 0.00 0.00 35.89 3.36
1922 2316 3.045518 TCACGGTTAGCAGGTGAGA 57.954 52.632 0.00 0.00 35.89 3.27
1924 2318 0.601558 GTCTCACGGTTAGCAGGTGA 59.398 55.000 3.41 3.41 38.29 4.02
1925 2319 0.389948 GGTCTCACGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
1926 2320 0.542232 AGGTCTCACGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
1927 2321 0.108615 CAGGTCTCACGGTTAGCAGG 60.109 60.000 0.00 0.00 0.00 4.85
1928 2322 0.108615 CCAGGTCTCACGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
1929 2323 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
1930 2324 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
1931 2325 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
1932 2326 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
1933 2327 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
1967 2361 9.365906 CCCAATTGCCAATAGCCATATATTATA 57.634 33.333 0.00 0.00 42.71 0.98
1968 2362 8.066867 TCCCAATTGCCAATAGCCATATATTAT 58.933 33.333 0.00 0.00 42.71 1.28
1969 2363 7.417554 TCCCAATTGCCAATAGCCATATATTA 58.582 34.615 0.00 0.00 42.71 0.98
1970 2364 6.262980 TCCCAATTGCCAATAGCCATATATT 58.737 36.000 0.00 0.00 42.71 1.28
1971 2365 5.841209 TCCCAATTGCCAATAGCCATATAT 58.159 37.500 0.00 0.00 42.71 0.86
2015 2409 4.383444 CCATGAACTCAGCTAGATTGTCCA 60.383 45.833 0.00 0.00 0.00 4.02
2136 2848 4.956085 TCACCCCAATATATCAACGACTG 58.044 43.478 0.00 0.00 0.00 3.51
2268 2980 7.818930 AGTGGAACAAATAACATAAGCATTTGG 59.181 33.333 10.12 0.00 44.16 3.28
2364 3076 4.126208 TCCATGCTACAATTTGCAATGG 57.874 40.909 0.00 1.28 42.74 3.16
2540 3252 8.779354 ACTAAAGCCACATTTTTGTGTAAAAA 57.221 26.923 5.48 0.00 40.33 1.94
2569 3281 9.807649 AGGAAAATATTTGAGTGAATTATGCAC 57.192 29.630 0.39 0.00 36.53 4.57
2703 3762 1.948611 GCGCCCATCACACCTTTTAGA 60.949 52.381 0.00 0.00 0.00 2.10
2706 3765 1.530419 TGCGCCCATCACACCTTTT 60.530 52.632 4.18 0.00 0.00 2.27
2897 3957 4.558226 TGTGGCATTGTCAGTTCTAGAT 57.442 40.909 0.00 0.00 0.00 1.98
2907 3967 3.840890 TCGGTAAATTGTGGCATTGTC 57.159 42.857 0.00 0.00 0.00 3.18
2927 3987 9.790389 TGTAACAAAAGTTCGATAACAAATGTT 57.210 25.926 4.01 4.01 38.74 2.71
3032 4092 0.974010 CAAGTGGGCTGGGCATTGAT 60.974 55.000 0.00 0.00 0.00 2.57
3158 4218 4.133820 CCCAATTACAGTTGTGTCACTGA 58.866 43.478 7.82 0.00 46.29 3.41
3172 4232 2.099756 GGATGCTCACTTGCCCAATTAC 59.900 50.000 0.00 0.00 0.00 1.89
3194 4255 3.815809 TGTAATACCCCAGCACATTAGC 58.184 45.455 0.00 0.00 0.00 3.09
3424 4485 7.990886 TCACTTCGTCCATTAAAAAGGCTATAT 59.009 33.333 0.00 0.00 0.00 0.86
3425 4486 7.332557 TCACTTCGTCCATTAAAAAGGCTATA 58.667 34.615 0.00 0.00 0.00 1.31
3571 4665 1.200020 GGCACCACAAGCTGTACATTC 59.800 52.381 0.00 0.00 0.00 2.67
3664 4759 8.492673 TGTCACTGGATGCTTAACTAAATTAG 57.507 34.615 0.00 0.00 0.00 1.73
3678 4773 2.814805 AGGGGAAATGTCACTGGATG 57.185 50.000 0.00 0.00 0.00 3.51
3702 4797 8.997323 AGACAAATCTTACTGTGAGATCAAAAG 58.003 33.333 14.51 6.78 32.86 2.27
3798 4894 3.472283 AACAGGCACAAAATTGATGCA 57.528 38.095 16.66 0.00 37.12 3.96
3870 4967 7.832503 AATCCTTCAGACAACAAAACAAAAG 57.167 32.000 0.00 0.00 0.00 2.27
4291 5389 1.102978 AAACAGCGTGCTCAAGGTTT 58.897 45.000 0.00 0.00 0.00 3.27
5127 7042 2.290641 AGTCTCGAAAAGCACGCAATTT 59.709 40.909 0.00 0.00 0.00 1.82
5303 7218 6.461788 GGTGTTTCCAGTTATAACTTGGCAAA 60.462 38.462 15.60 16.17 37.08 3.68
5325 7242 8.682936 ATCTTATTTCCAGCTATAACTTGGTG 57.317 34.615 0.00 0.00 33.65 4.17
5326 7243 7.657761 CGATCTTATTTCCAGCTATAACTTGGT 59.342 37.037 0.00 0.00 33.65 3.67
5327 7244 7.872993 TCGATCTTATTTCCAGCTATAACTTGG 59.127 37.037 0.00 0.00 0.00 3.61
5328 7245 8.818141 TCGATCTTATTTCCAGCTATAACTTG 57.182 34.615 0.00 0.00 0.00 3.16
5329 7246 9.832445 TTTCGATCTTATTTCCAGCTATAACTT 57.168 29.630 0.00 0.00 0.00 2.66
5330 7247 9.832445 TTTTCGATCTTATTTCCAGCTATAACT 57.168 29.630 0.00 0.00 0.00 2.24
5386 7303 1.131883 GCGCAAATTCTCACATCAGCT 59.868 47.619 0.30 0.00 0.00 4.24
5387 7304 1.135603 TGCGCAAATTCTCACATCAGC 60.136 47.619 8.16 0.00 0.00 4.26
5388 7305 2.905959 TGCGCAAATTCTCACATCAG 57.094 45.000 8.16 0.00 0.00 2.90
5389 7306 3.853831 AATGCGCAAATTCTCACATCA 57.146 38.095 17.11 0.00 0.00 3.07
5390 7307 4.168014 TGAAATGCGCAAATTCTCACATC 58.832 39.130 28.41 10.83 0.00 3.06
5395 7312 5.520022 ACATTTGAAATGCGCAAATTCTC 57.480 34.783 28.41 16.54 42.33 2.87
5396 7313 5.927954 AACATTTGAAATGCGCAAATTCT 57.072 30.435 28.41 14.04 42.33 2.40
5403 7323 4.907188 TCATGAAACATTTGAAATGCGC 57.093 36.364 17.19 0.00 0.00 6.09
5411 7331 6.702972 TGGCGTTAATTCATGAAACATTTG 57.297 33.333 13.09 2.67 0.00 2.32
5421 7345 5.590259 AGTTATCTGCTTGGCGTTAATTCAT 59.410 36.000 0.00 0.00 0.00 2.57
5430 7354 3.374988 TGAATCAAGTTATCTGCTTGGCG 59.625 43.478 5.39 0.00 42.44 5.69
5432 7356 7.615582 TTACTGAATCAAGTTATCTGCTTGG 57.384 36.000 5.39 0.00 42.44 3.61
5475 7399 5.810525 ACATGCAAAGATTATACAAGTCGC 58.189 37.500 0.00 0.00 0.00 5.19
5476 7400 9.935682 ATTAACATGCAAAGATTATACAAGTCG 57.064 29.630 0.00 0.00 0.00 4.18
5518 7442 4.872124 GTGAACCCCTTATACGAAACGAAT 59.128 41.667 0.00 0.00 0.00 3.34
5519 7443 4.244862 GTGAACCCCTTATACGAAACGAA 58.755 43.478 0.00 0.00 0.00 3.85
5521 7445 2.599973 CGTGAACCCCTTATACGAAACG 59.400 50.000 0.00 0.00 36.94 3.60
5522 7446 3.588955 ACGTGAACCCCTTATACGAAAC 58.411 45.455 0.00 0.00 38.08 2.78
5523 7447 3.959535 ACGTGAACCCCTTATACGAAA 57.040 42.857 0.00 0.00 38.08 3.46
5525 7453 5.360714 AGAAATACGTGAACCCCTTATACGA 59.639 40.000 0.00 0.00 38.08 3.43
5527 7455 8.985805 CATAAGAAATACGTGAACCCCTTATAC 58.014 37.037 0.00 0.00 0.00 1.47
5607 7535 6.202954 CGTTTGTATATGGACTTCAATCTCCC 59.797 42.308 0.00 0.00 0.00 4.30
5608 7536 6.202954 CCGTTTGTATATGGACTTCAATCTCC 59.797 42.308 0.00 0.00 0.00 3.71
5640 7568 0.675522 AAAGGGTGCAACGGGTATCG 60.676 55.000 0.00 0.00 45.88 2.92
5647 7575 3.034721 TCTGTACTAAAGGGTGCAACG 57.965 47.619 0.00 0.00 38.12 4.10
5758 8881 5.907391 AGAACACAAACGCTTATTTTTCTCG 59.093 36.000 0.00 0.00 0.00 4.04
5791 8914 6.757897 TCCAGCCATTAATTCTTGTAACTG 57.242 37.500 0.00 0.00 0.00 3.16
5792 8915 7.961326 ATTCCAGCCATTAATTCTTGTAACT 57.039 32.000 0.00 0.00 0.00 2.24
5793 8916 9.516314 GTTATTCCAGCCATTAATTCTTGTAAC 57.484 33.333 0.00 0.00 0.00 2.50
5794 8917 9.249053 TGTTATTCCAGCCATTAATTCTTGTAA 57.751 29.630 0.00 0.00 0.00 2.41
5795 8918 8.815565 TGTTATTCCAGCCATTAATTCTTGTA 57.184 30.769 0.00 0.00 0.00 2.41
5796 8919 7.716799 TGTTATTCCAGCCATTAATTCTTGT 57.283 32.000 0.00 0.00 0.00 3.16
5810 8933 6.449698 AGTGCATGAAAAGTTGTTATTCCAG 58.550 36.000 0.00 0.00 0.00 3.86
5844 8967 4.574759 GCGTATTTTTGTATGTGTCTCGG 58.425 43.478 0.00 0.00 0.00 4.63
5845 8968 4.201551 ACGCGTATTTTTGTATGTGTCTCG 60.202 41.667 11.67 0.00 30.64 4.04
5847 8970 5.600908 AACGCGTATTTTTGTATGTGTCT 57.399 34.783 14.46 0.00 34.24 3.41
5848 8971 6.663480 AAAACGCGTATTTTTGTATGTGTC 57.337 33.333 14.46 0.00 34.24 3.67
5885 9008 8.024285 TGTTCGTAAAAACATGTGTCTCTTTTT 58.976 29.630 9.74 9.01 34.31 1.94
5886 9009 7.531716 TGTTCGTAAAAACATGTGTCTCTTTT 58.468 30.769 0.00 4.75 34.31 2.27
5888 9011 6.671614 TGTTCGTAAAAACATGTGTCTCTT 57.328 33.333 0.00 0.00 34.31 2.85
5889 9012 6.671614 TTGTTCGTAAAAACATGTGTCTCT 57.328 33.333 0.00 0.00 38.83 3.10
5951 9518 4.019411 CCTAAATTTGGACAGGCCCATTTT 60.019 41.667 0.00 0.00 35.87 1.82
6042 9609 0.709992 AGAGGAAGAGACTGGAGGCT 59.290 55.000 0.00 0.00 0.00 4.58
6069 9640 0.040692 GTTTCGCCGTCTTTGGGTTC 60.041 55.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.