Multiple sequence alignment - TraesCS6B01G238200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G238200 chr6B 100.000 2459 0 0 1 2459 414342924 414345382 0.000000e+00 4542.0
1 TraesCS6B01G238200 chr6B 99.459 555 2 1 1 555 154598289 154598842 0.000000e+00 1007.0
2 TraesCS6B01G238200 chr6D 95.039 1774 51 21 715 2459 266783044 266784809 0.000000e+00 2754.0
3 TraesCS6B01G238200 chr6D 89.344 122 7 2 606 721 266782899 266783020 5.480000e-32 148.0
4 TraesCS6B01G238200 chr6A 93.239 1760 82 19 715 2459 378186909 378188646 0.000000e+00 2556.0
5 TraesCS6B01G238200 chr6A 93.827 81 5 0 553 633 378172283 378172363 3.320000e-24 122.0
6 TraesCS6B01G238200 chr5B 90.909 561 45 4 1 555 427250791 427250231 0.000000e+00 749.0
7 TraesCS6B01G238200 chr2D 83.333 198 25 5 370 562 17160397 17160591 2.510000e-40 176.0
8 TraesCS6B01G238200 chr4A 88.550 131 15 0 425 555 646808549 646808679 2.530000e-35 159.0
9 TraesCS6B01G238200 chr2A 88.060 134 14 2 431 562 18625085 18625218 9.100000e-35 158.0
10 TraesCS6B01G238200 chr2A 80.233 172 28 4 391 557 742295184 742295014 9.230000e-25 124.0
11 TraesCS6B01G238200 chr7A 80.208 192 37 1 375 565 31654214 31654405 2.550000e-30 143.0
12 TraesCS6B01G238200 chr3D 84.328 134 21 0 422 555 564991701 564991834 5.520000e-27 132.0
13 TraesCS6B01G238200 chr1D 82.979 141 20 3 376 512 460612973 460612833 9.230000e-25 124.0
14 TraesCS6B01G238200 chr1D 90.385 52 4 1 557 608 208856886 208856836 1.580000e-07 67.6
15 TraesCS6B01G238200 chr1B 92.157 51 3 1 557 607 327831002 327831051 1.220000e-08 71.3
16 TraesCS6B01G238200 chr1A 90.196 51 4 1 557 607 296204192 296204241 5.680000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G238200 chr6B 414342924 414345382 2458 False 4542 4542 100.0000 1 2459 1 chr6B.!!$F2 2458
1 TraesCS6B01G238200 chr6B 154598289 154598842 553 False 1007 1007 99.4590 1 555 1 chr6B.!!$F1 554
2 TraesCS6B01G238200 chr6D 266782899 266784809 1910 False 1451 2754 92.1915 606 2459 2 chr6D.!!$F1 1853
3 TraesCS6B01G238200 chr6A 378186909 378188646 1737 False 2556 2556 93.2390 715 2459 1 chr6A.!!$F2 1744
4 TraesCS6B01G238200 chr5B 427250231 427250791 560 True 749 749 90.9090 1 555 1 chr5B.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 735 0.108424 CACTGGTCTGGAGTAGCTGC 60.108 60.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1774 0.386985 GTCGTCGTTCCTGACTGGAC 60.387 60.0 0.0 0.0 46.14 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
555 562 3.007506 ACATCACCGGTGTAATTGACTCA 59.992 43.478 32.74 11.11 0.00 3.41
556 563 3.755112 TCACCGGTGTAATTGACTCAA 57.245 42.857 32.74 7.31 0.00 3.02
557 564 4.074627 TCACCGGTGTAATTGACTCAAA 57.925 40.909 32.74 7.09 0.00 2.69
558 565 4.647611 TCACCGGTGTAATTGACTCAAAT 58.352 39.130 32.74 0.00 0.00 2.32
559 566 5.795972 TCACCGGTGTAATTGACTCAAATA 58.204 37.500 32.74 5.91 0.00 1.40
560 567 6.411376 TCACCGGTGTAATTGACTCAAATAT 58.589 36.000 32.74 0.00 0.00 1.28
561 568 7.557724 TCACCGGTGTAATTGACTCAAATATA 58.442 34.615 32.74 5.12 0.00 0.86
562 569 8.041919 TCACCGGTGTAATTGACTCAAATATAA 58.958 33.333 32.74 4.78 0.00 0.98
563 570 8.670135 CACCGGTGTAATTGACTCAAATATAAA 58.330 33.333 26.95 0.00 0.00 1.40
564 571 8.671028 ACCGGTGTAATTGACTCAAATATAAAC 58.329 33.333 6.12 0.00 0.00 2.01
565 572 8.889717 CCGGTGTAATTGACTCAAATATAAACT 58.110 33.333 0.00 0.00 0.00 2.66
573 580 9.780186 ATTGACTCAAATATAAACTAGCCTACC 57.220 33.333 0.00 0.00 0.00 3.18
574 581 8.313944 TGACTCAAATATAAACTAGCCTACCA 57.686 34.615 0.00 0.00 0.00 3.25
575 582 8.764558 TGACTCAAATATAAACTAGCCTACCAA 58.235 33.333 0.00 0.00 0.00 3.67
576 583 9.609346 GACTCAAATATAAACTAGCCTACCAAA 57.391 33.333 0.00 0.00 0.00 3.28
577 584 9.969001 ACTCAAATATAAACTAGCCTACCAAAA 57.031 29.630 0.00 0.00 0.00 2.44
579 586 8.885722 TCAAATATAAACTAGCCTACCAAAACG 58.114 33.333 0.00 0.00 0.00 3.60
580 587 8.671028 CAAATATAAACTAGCCTACCAAAACGT 58.329 33.333 0.00 0.00 0.00 3.99
581 588 8.429493 AATATAAACTAGCCTACCAAAACGTC 57.571 34.615 0.00 0.00 0.00 4.34
582 589 4.347360 AAACTAGCCTACCAAAACGTCT 57.653 40.909 0.00 0.00 0.00 4.18
583 590 4.347360 AACTAGCCTACCAAAACGTCTT 57.653 40.909 0.00 0.00 0.00 3.01
584 591 3.660865 ACTAGCCTACCAAAACGTCTTG 58.339 45.455 0.00 0.00 0.00 3.02
585 592 2.632987 AGCCTACCAAAACGTCTTGT 57.367 45.000 0.20 0.00 0.00 3.16
586 593 3.756933 AGCCTACCAAAACGTCTTGTA 57.243 42.857 0.20 0.00 0.00 2.41
587 594 4.281898 AGCCTACCAAAACGTCTTGTAT 57.718 40.909 0.20 0.00 0.00 2.29
588 595 4.648651 AGCCTACCAAAACGTCTTGTATT 58.351 39.130 0.20 0.00 0.00 1.89
589 596 5.067954 AGCCTACCAAAACGTCTTGTATTT 58.932 37.500 0.20 0.00 0.00 1.40
590 597 5.533528 AGCCTACCAAAACGTCTTGTATTTT 59.466 36.000 0.20 0.00 0.00 1.82
591 598 5.627780 GCCTACCAAAACGTCTTGTATTTTG 59.372 40.000 0.20 0.46 41.10 2.44
592 599 6.513720 GCCTACCAAAACGTCTTGTATTTTGA 60.514 38.462 0.20 0.00 43.07 2.69
593 600 7.419204 CCTACCAAAACGTCTTGTATTTTGAA 58.581 34.615 0.20 0.00 43.07 2.69
594 601 7.589954 CCTACCAAAACGTCTTGTATTTTGAAG 59.410 37.037 0.20 2.49 43.07 3.02
595 602 6.859017 ACCAAAACGTCTTGTATTTTGAAGT 58.141 32.000 0.20 0.00 43.07 3.01
596 603 6.750039 ACCAAAACGTCTTGTATTTTGAAGTG 59.250 34.615 0.20 0.00 43.07 3.16
597 604 6.198216 CCAAAACGTCTTGTATTTTGAAGTGG 59.802 38.462 0.20 0.00 43.07 4.00
598 605 6.687081 AAACGTCTTGTATTTTGAAGTGGA 57.313 33.333 0.00 0.00 0.00 4.02
599 606 5.924475 ACGTCTTGTATTTTGAAGTGGAG 57.076 39.130 0.00 0.00 0.00 3.86
600 607 4.755123 ACGTCTTGTATTTTGAAGTGGAGG 59.245 41.667 0.00 0.00 0.00 4.30
601 608 4.755123 CGTCTTGTATTTTGAAGTGGAGGT 59.245 41.667 0.00 0.00 0.00 3.85
602 609 5.929992 CGTCTTGTATTTTGAAGTGGAGGTA 59.070 40.000 0.00 0.00 0.00 3.08
603 610 6.090898 CGTCTTGTATTTTGAAGTGGAGGTAG 59.909 42.308 0.00 0.00 0.00 3.18
604 611 6.935208 GTCTTGTATTTTGAAGTGGAGGTAGT 59.065 38.462 0.00 0.00 0.00 2.73
605 612 8.092687 GTCTTGTATTTTGAAGTGGAGGTAGTA 58.907 37.037 0.00 0.00 0.00 1.82
606 613 8.653191 TCTTGTATTTTGAAGTGGAGGTAGTAA 58.347 33.333 0.00 0.00 0.00 2.24
607 614 8.611654 TTGTATTTTGAAGTGGAGGTAGTAAC 57.388 34.615 0.00 0.00 0.00 2.50
641 648 5.863965 ACCAATGAAAACAAAAGGTATGGG 58.136 37.500 0.00 0.00 0.00 4.00
647 654 5.536916 TGAAAACAAAAGGTATGGGGTAGTG 59.463 40.000 0.00 0.00 0.00 2.74
654 661 7.403813 ACAAAAGGTATGGGGTAGTGAGTAATA 59.596 37.037 0.00 0.00 0.00 0.98
702 715 0.391130 CCCATTCGTTCAAGCTCCGA 60.391 55.000 0.00 0.00 0.00 4.55
721 734 1.203523 GACACTGGTCTGGAGTAGCTG 59.796 57.143 0.00 0.00 40.99 4.24
722 735 0.108424 CACTGGTCTGGAGTAGCTGC 60.108 60.000 0.00 0.00 0.00 5.25
723 736 0.542938 ACTGGTCTGGAGTAGCTGCA 60.543 55.000 4.12 0.00 0.00 4.41
724 737 0.829333 CTGGTCTGGAGTAGCTGCAT 59.171 55.000 4.12 0.00 30.16 3.96
725 738 2.034878 CTGGTCTGGAGTAGCTGCATA 58.965 52.381 4.12 0.00 30.16 3.14
727 740 1.757118 GGTCTGGAGTAGCTGCATACA 59.243 52.381 4.12 0.00 32.38 2.29
752 793 1.066929 CAAAAACTACATGGCCAGCCC 60.067 52.381 13.05 0.00 34.56 5.19
753 794 0.965363 AAAACTACATGGCCAGCCCG 60.965 55.000 13.05 1.68 35.87 6.13
754 795 2.137177 AAACTACATGGCCAGCCCGT 62.137 55.000 13.05 8.38 35.87 5.28
768 809 1.772063 GCCCGTCCACACGCATAATC 61.772 60.000 0.00 0.00 45.29 1.75
769 810 1.487452 CCCGTCCACACGCATAATCG 61.487 60.000 0.00 0.00 45.29 3.34
836 880 1.679680 CGGCTACCGTTGGATTCTCTA 59.320 52.381 0.00 0.00 42.73 2.43
837 881 2.100252 CGGCTACCGTTGGATTCTCTAA 59.900 50.000 0.00 0.00 42.73 2.10
838 882 3.455327 GGCTACCGTTGGATTCTCTAAC 58.545 50.000 0.00 0.00 34.94 2.34
1011 1057 0.532417 GCATCGGCATGAAGAGCTCT 60.532 55.000 11.45 11.45 40.72 4.09
1185 1231 4.722700 TTCAAGCTGGAGGCCGCC 62.723 66.667 20.28 20.28 43.05 6.13
1480 1533 2.426738 CTGCCTAGTGTTCTCCTCTCTG 59.573 54.545 0.00 0.00 0.00 3.35
1481 1534 2.225142 TGCCTAGTGTTCTCCTCTCTGT 60.225 50.000 0.00 0.00 0.00 3.41
1492 1549 4.331968 TCTCCTCTCTGTCTGTTTCTCTC 58.668 47.826 0.00 0.00 0.00 3.20
1512 1569 1.760029 CCTCTAGTCCTTCCTTGCCTC 59.240 57.143 0.00 0.00 0.00 4.70
1561 1632 5.767665 ACTTATTACATTGTCAACCACAGCA 59.232 36.000 0.00 0.00 35.97 4.41
1663 1738 1.442769 TCGCCAATCAGAGTTCAAGC 58.557 50.000 0.00 0.00 0.00 4.01
1699 1774 0.107993 ATGTGTCTGCGGTCCATCAG 60.108 55.000 0.00 2.48 0.00 2.90
1734 1809 3.121696 CGACGACAAGCAAAAGAAAATGC 60.122 43.478 0.00 0.00 42.87 3.56
1742 1819 4.768583 AGCAAAAGAAAATGCAAGTCCAA 58.231 34.783 0.00 0.00 44.95 3.53
1783 1860 2.224606 TCGCACCCTACGTCCTAATAG 58.775 52.381 0.00 0.00 0.00 1.73
1876 1953 3.591979 TTGCATTGCAAACCTCAGC 57.408 47.368 21.24 1.87 45.96 4.26
1884 1961 1.134128 TGCAAACCTCAGCTTCTCACA 60.134 47.619 0.00 0.00 0.00 3.58
2110 2187 3.429492 GGTAGCCAGTATAGTAGGGGAC 58.571 54.545 0.00 0.00 0.00 4.46
2149 2226 0.682292 GCAGGGTAGCCAGGATAGAC 59.318 60.000 14.62 0.00 0.00 2.59
2168 2245 2.492484 GACTGTATAGTAGGGGATGGCG 59.508 54.545 0.00 0.00 37.25 5.69
2228 2305 4.272018 CCACTAGCTTGCACATCTTGATAC 59.728 45.833 0.00 0.00 0.00 2.24
2428 2505 3.271729 ACAAGAATCATGCTGCTGAGAG 58.728 45.455 0.00 0.00 0.00 3.20
2434 2511 2.964740 TCATGCTGCTGAGAGTAACAC 58.035 47.619 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
555 562 8.797350 ACGTTTTGGTAGGCTAGTTTATATTT 57.203 30.769 0.00 0.00 0.00 1.40
556 563 8.262933 AGACGTTTTGGTAGGCTAGTTTATATT 58.737 33.333 0.00 0.00 0.00 1.28
557 564 7.789026 AGACGTTTTGGTAGGCTAGTTTATAT 58.211 34.615 0.00 0.00 0.00 0.86
558 565 7.174107 AGACGTTTTGGTAGGCTAGTTTATA 57.826 36.000 0.00 0.00 0.00 0.98
559 566 6.046290 AGACGTTTTGGTAGGCTAGTTTAT 57.954 37.500 0.00 0.00 0.00 1.40
560 567 5.473066 AGACGTTTTGGTAGGCTAGTTTA 57.527 39.130 0.00 0.00 0.00 2.01
561 568 4.347360 AGACGTTTTGGTAGGCTAGTTT 57.653 40.909 0.00 0.00 0.00 2.66
562 569 4.062991 CAAGACGTTTTGGTAGGCTAGTT 58.937 43.478 10.84 0.00 0.00 2.24
563 570 3.070590 ACAAGACGTTTTGGTAGGCTAGT 59.929 43.478 21.34 0.00 32.32 2.57
564 571 3.660865 ACAAGACGTTTTGGTAGGCTAG 58.339 45.455 21.34 0.00 32.32 3.42
565 572 3.756933 ACAAGACGTTTTGGTAGGCTA 57.243 42.857 21.34 0.00 32.32 3.93
566 573 2.632987 ACAAGACGTTTTGGTAGGCT 57.367 45.000 21.34 0.00 32.32 4.58
567 574 5.366829 AAATACAAGACGTTTTGGTAGGC 57.633 39.130 21.34 0.00 32.32 3.93
568 575 6.961576 TCAAAATACAAGACGTTTTGGTAGG 58.038 36.000 21.34 7.28 41.05 3.18
569 576 8.126700 ACTTCAAAATACAAGACGTTTTGGTAG 58.873 33.333 21.34 13.11 41.05 3.18
570 577 7.911205 CACTTCAAAATACAAGACGTTTTGGTA 59.089 33.333 21.34 12.07 41.05 3.25
571 578 6.750039 CACTTCAAAATACAAGACGTTTTGGT 59.250 34.615 21.34 10.48 41.05 3.67
572 579 6.198216 CCACTTCAAAATACAAGACGTTTTGG 59.802 38.462 21.34 4.30 41.05 3.28
573 580 6.970043 TCCACTTCAAAATACAAGACGTTTTG 59.030 34.615 16.58 16.58 41.69 2.44
574 581 7.090953 TCCACTTCAAAATACAAGACGTTTT 57.909 32.000 0.00 0.00 0.00 2.43
575 582 6.238648 CCTCCACTTCAAAATACAAGACGTTT 60.239 38.462 0.00 0.00 0.00 3.60
576 583 5.238650 CCTCCACTTCAAAATACAAGACGTT 59.761 40.000 0.00 0.00 0.00 3.99
577 584 4.755123 CCTCCACTTCAAAATACAAGACGT 59.245 41.667 0.00 0.00 0.00 4.34
578 585 4.755123 ACCTCCACTTCAAAATACAAGACG 59.245 41.667 0.00 0.00 0.00 4.18
579 586 6.935208 ACTACCTCCACTTCAAAATACAAGAC 59.065 38.462 0.00 0.00 0.00 3.01
580 587 7.074653 ACTACCTCCACTTCAAAATACAAGA 57.925 36.000 0.00 0.00 0.00 3.02
581 588 8.718734 GTTACTACCTCCACTTCAAAATACAAG 58.281 37.037 0.00 0.00 0.00 3.16
582 589 8.434392 AGTTACTACCTCCACTTCAAAATACAA 58.566 33.333 0.00 0.00 0.00 2.41
583 590 7.970102 AGTTACTACCTCCACTTCAAAATACA 58.030 34.615 0.00 0.00 0.00 2.29
584 591 8.718734 CAAGTTACTACCTCCACTTCAAAATAC 58.281 37.037 0.00 0.00 0.00 1.89
585 592 8.434392 ACAAGTTACTACCTCCACTTCAAAATA 58.566 33.333 0.00 0.00 0.00 1.40
586 593 7.287810 ACAAGTTACTACCTCCACTTCAAAAT 58.712 34.615 0.00 0.00 0.00 1.82
587 594 6.655930 ACAAGTTACTACCTCCACTTCAAAA 58.344 36.000 0.00 0.00 0.00 2.44
588 595 6.243216 ACAAGTTACTACCTCCACTTCAAA 57.757 37.500 0.00 0.00 0.00 2.69
589 596 5.881923 ACAAGTTACTACCTCCACTTCAA 57.118 39.130 0.00 0.00 0.00 2.69
590 597 5.881923 AACAAGTTACTACCTCCACTTCA 57.118 39.130 0.00 0.00 0.00 3.02
591 598 8.843885 AATAAACAAGTTACTACCTCCACTTC 57.156 34.615 0.00 0.00 0.00 3.01
593 600 9.716531 GTTAATAAACAAGTTACTACCTCCACT 57.283 33.333 0.00 0.00 35.56 4.00
594 601 8.939929 GGTTAATAAACAAGTTACTACCTCCAC 58.060 37.037 0.00 0.00 37.34 4.02
595 602 8.658619 TGGTTAATAAACAAGTTACTACCTCCA 58.341 33.333 0.00 0.00 37.34 3.86
596 603 9.506018 TTGGTTAATAAACAAGTTACTACCTCC 57.494 33.333 0.00 0.00 37.34 4.30
654 661 6.426633 GCCAACAAAAGCATAAATTGTTAGGT 59.573 34.615 3.13 0.00 43.36 3.08
693 706 0.668706 CAGACCAGTGTCGGAGCTTG 60.669 60.000 0.00 0.00 46.51 4.01
702 715 1.261480 CAGCTACTCCAGACCAGTGT 58.739 55.000 0.00 0.00 0.00 3.55
721 734 5.633182 CCATGTAGTTTTTGTGGTTGTATGC 59.367 40.000 0.00 0.00 0.00 3.14
722 735 5.633182 GCCATGTAGTTTTTGTGGTTGTATG 59.367 40.000 0.00 0.00 32.56 2.39
723 736 5.279256 GGCCATGTAGTTTTTGTGGTTGTAT 60.279 40.000 0.00 0.00 32.56 2.29
724 737 4.038162 GGCCATGTAGTTTTTGTGGTTGTA 59.962 41.667 0.00 0.00 32.56 2.41
725 738 3.181470 GGCCATGTAGTTTTTGTGGTTGT 60.181 43.478 0.00 0.00 32.56 3.32
727 740 3.034635 TGGCCATGTAGTTTTTGTGGTT 58.965 40.909 0.00 0.00 32.56 3.67
753 794 0.810031 AGGCGATTATGCGTGTGGAC 60.810 55.000 0.00 0.00 35.06 4.02
754 795 0.747852 TAGGCGATTATGCGTGTGGA 59.252 50.000 0.00 0.00 34.38 4.02
768 809 3.900941 AGTTTTGCAAGTGAAATAGGCG 58.099 40.909 0.00 0.00 0.00 5.52
769 810 5.752955 TGAAAGTTTTGCAAGTGAAATAGGC 59.247 36.000 0.00 0.00 0.00 3.93
841 885 0.814010 GCCTCACGTTCACAAGTGGT 60.814 55.000 0.00 0.00 38.77 4.16
1011 1057 3.620300 GATGTCCACGTCGTCCGCA 62.620 63.158 0.00 0.00 41.42 5.69
1461 1510 2.425668 GACAGAGAGGAGAACACTAGGC 59.574 54.545 0.00 0.00 0.00 3.93
1462 1515 3.694072 CAGACAGAGAGGAGAACACTAGG 59.306 52.174 0.00 0.00 0.00 3.02
1480 1533 4.595986 AGGACTAGAGGAGAGAAACAGAC 58.404 47.826 0.00 0.00 0.00 3.51
1481 1534 4.938575 AGGACTAGAGGAGAGAAACAGA 57.061 45.455 0.00 0.00 0.00 3.41
1492 1549 1.760029 GAGGCAAGGAAGGACTAGAGG 59.240 57.143 0.00 0.00 0.00 3.69
1512 1569 0.886490 AGACGCTGCCCAAGTCTTTG 60.886 55.000 2.63 0.00 41.93 2.77
1663 1738 7.568315 GCAGACACATCACTCATTATTATCGTG 60.568 40.741 0.00 0.00 0.00 4.35
1699 1774 0.386985 GTCGTCGTTCCTGACTGGAC 60.387 60.000 0.00 0.00 46.14 4.02
1734 1809 5.278957 CCAAGTTACCTGGATTTTGGACTTG 60.279 44.000 0.00 9.05 37.79 3.16
1742 1819 4.600062 GATCACCCAAGTTACCTGGATTT 58.400 43.478 0.00 0.00 0.00 2.17
1783 1860 1.134946 GTTATGCCATTCCTGTGGTGC 59.865 52.381 0.00 0.00 41.47 5.01
1876 1953 2.223688 CCGCTACTGGAGATGTGAGAAG 60.224 54.545 0.00 0.00 0.00 2.85
2041 2118 4.141937 TGCACTTCTATCTTGTCGCCTATT 60.142 41.667 0.00 0.00 0.00 1.73
2110 2187 2.225019 GCAGGTTATGATCAGAATGGCG 59.775 50.000 5.98 0.00 36.16 5.69
2149 2226 2.526432 ACGCCATCCCCTACTATACAG 58.474 52.381 0.00 0.00 0.00 2.74
2168 2245 4.095483 CCAGTTGCCAGTTATGATCAGAAC 59.905 45.833 22.67 22.67 33.05 3.01
2316 2393 2.558313 GACGGCACAAGCTCAAGC 59.442 61.111 0.00 0.00 41.70 4.01
2428 2505 4.558697 GCAGTTCCCCTTTTCATGTGTTAC 60.559 45.833 0.00 0.00 0.00 2.50
2434 2511 2.229784 GTGAGCAGTTCCCCTTTTCATG 59.770 50.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.