Multiple sequence alignment - TraesCS6B01G238100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G238100 chr6B 100.000 4204 0 0 1 4204 414332866 414337069 0.000000e+00 7764.0
1 TraesCS6B01G238100 chr6D 90.085 1876 100 32 178 2046 266777639 266779435 0.000000e+00 2355.0
2 TraesCS6B01G238100 chr6D 94.988 1217 46 9 2124 3335 266779454 266780660 0.000000e+00 1895.0
3 TraesCS6B01G238100 chr6D 90.747 843 42 17 3377 4202 266780657 266781480 0.000000e+00 1092.0
4 TraesCS6B01G238100 chr6D 80.556 180 25 7 3841 4012 11072905 11073082 3.410000e-26 130.0
5 TraesCS6B01G238100 chr6A 94.792 864 40 5 2123 2984 378167835 378168695 0.000000e+00 1341.0
6 TraesCS6B01G238100 chr6A 92.888 914 33 15 1129 2035 378166946 378167834 0.000000e+00 1299.0
7 TraesCS6B01G238100 chr6A 91.623 764 49 10 370 1128 378166149 378166902 0.000000e+00 1042.0
8 TraesCS6B01G238100 chr6A 89.332 853 50 16 3374 4202 378170853 378171688 0.000000e+00 1033.0
9 TraesCS6B01G238100 chr6A 89.779 362 16 9 2976 3335 378170517 378170859 1.070000e-120 444.0
10 TraesCS6B01G238100 chr6A 88.304 171 8 3 172 340 378161675 378161835 1.190000e-45 195.0
11 TraesCS6B01G238100 chr5D 94.815 405 18 3 2124 2527 367505829 367505427 2.760000e-176 628.0
12 TraesCS6B01G238100 chr5D 93.857 407 20 4 2124 2527 437148961 437149365 3.590000e-170 608.0
13 TraesCS6B01G238100 chr5D 91.538 260 15 3 1785 2040 367506088 367505832 6.690000e-93 351.0
14 TraesCS6B01G238100 chr5D 91.829 257 14 3 1785 2037 437148702 437148955 6.690000e-93 351.0
15 TraesCS6B01G238100 chr5D 75.581 172 27 7 3837 3997 371473493 371473660 2.100000e-08 71.3
16 TraesCS6B01G238100 chr1D 94.815 405 18 3 2124 2527 435736418 435736820 2.760000e-176 628.0
17 TraesCS6B01G238100 chr1D 76.638 351 51 20 3668 3999 66689927 66690265 9.350000e-37 165.0
18 TraesCS6B01G238100 chr7D 94.568 405 19 3 2124 2527 589199858 589199456 1.280000e-174 623.0
19 TraesCS6B01G238100 chr7D 94.568 405 19 3 2124 2527 589204628 589205030 1.280000e-174 623.0
20 TraesCS6B01G238100 chr7D 90.769 260 15 4 1785 2040 589200115 589199861 5.210000e-89 339.0
21 TraesCS6B01G238100 chr7D 91.051 257 14 4 1785 2037 589204371 589204622 5.210000e-89 339.0
22 TraesCS6B01G238100 chr2D 94.118 408 18 5 2124 2527 181602992 181602587 2.150000e-172 616.0
23 TraesCS6B01G238100 chr2D 91.154 260 16 3 1785 2040 181603251 181602995 3.110000e-91 346.0
24 TraesCS6B01G238100 chr2A 76.786 280 38 15 3736 3997 30071136 30071406 9.480000e-27 132.0
25 TraesCS6B01G238100 chr3B 79.444 180 21 11 3834 3999 437507321 437507144 3.440000e-21 113.0
26 TraesCS6B01G238100 chr2B 79.518 166 29 5 3852 4012 707965558 707965723 3.440000e-21 113.0
27 TraesCS6B01G238100 chr4A 79.699 133 23 4 3885 4013 5350851 5350983 4.480000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G238100 chr6B 414332866 414337069 4203 False 7764.000000 7764 100.0000 1 4204 1 chr6B.!!$F1 4203
1 TraesCS6B01G238100 chr6D 266777639 266781480 3841 False 1780.666667 2355 91.9400 178 4202 3 chr6D.!!$F2 4024
2 TraesCS6B01G238100 chr6A 378166149 378171688 5539 False 1031.800000 1341 91.6828 370 4202 5 chr6A.!!$F2 3832
3 TraesCS6B01G238100 chr5D 367505427 367506088 661 True 489.500000 628 93.1765 1785 2527 2 chr5D.!!$R1 742
4 TraesCS6B01G238100 chr5D 437148702 437149365 663 False 479.500000 608 92.8430 1785 2527 2 chr5D.!!$F2 742
5 TraesCS6B01G238100 chr7D 589199456 589200115 659 True 481.000000 623 92.6685 1785 2527 2 chr7D.!!$R1 742
6 TraesCS6B01G238100 chr7D 589204371 589205030 659 False 481.000000 623 92.8095 1785 2527 2 chr7D.!!$F1 742
7 TraesCS6B01G238100 chr2D 181602587 181603251 664 True 481.000000 616 92.6360 1785 2527 2 chr2D.!!$R1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 342 0.603975 AAGGTTGAGCGAGGAAGCAC 60.604 55.0 0.00 0.00 40.15 4.40 F
1020 1028 0.106708 TGGAGAAAGCGTTGCTCTGT 59.893 50.0 0.00 0.00 38.25 3.41 F
2726 2795 0.322975 GAGTCCTCTGTGTGGCACAT 59.677 55.0 24.95 4.47 43.71 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1490 0.028242 CCTTCGTCTCGTCATCGGAG 59.972 60.000 0.00 0.00 37.69 4.63 R
2814 2883 3.180189 GTGTGTGATGCAAAAATCGTGTG 59.820 43.478 0.00 0.00 0.00 3.82 R
3653 5556 0.522705 GTTCACGCGAGCTCGTATGA 60.523 55.000 34.46 31.38 41.21 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.798748 CGTTTTCGTATATTAGATGTTCCTCT 57.201 34.615 0.00 0.00 38.65 3.69
44 45 9.245962 CGTTTTCGTATATTAGATGTTCCTCTT 57.754 33.333 0.00 0.00 38.65 2.85
48 49 9.542462 TTCGTATATTAGATGTTCCTCTTTTGG 57.458 33.333 0.00 0.00 0.00 3.28
49 50 7.656137 TCGTATATTAGATGTTCCTCTTTTGGC 59.344 37.037 0.00 0.00 0.00 4.52
50 51 7.657761 CGTATATTAGATGTTCCTCTTTTGGCT 59.342 37.037 0.00 0.00 0.00 4.75
51 52 9.343539 GTATATTAGATGTTCCTCTTTTGGCTT 57.656 33.333 0.00 0.00 0.00 4.35
52 53 8.829373 ATATTAGATGTTCCTCTTTTGGCTTT 57.171 30.769 0.00 0.00 0.00 3.51
53 54 6.976934 TTAGATGTTCCTCTTTTGGCTTTT 57.023 33.333 0.00 0.00 0.00 2.27
54 55 5.876651 AGATGTTCCTCTTTTGGCTTTTT 57.123 34.783 0.00 0.00 0.00 1.94
55 56 5.604565 AGATGTTCCTCTTTTGGCTTTTTG 58.395 37.500 0.00 0.00 0.00 2.44
56 57 5.363580 AGATGTTCCTCTTTTGGCTTTTTGA 59.636 36.000 0.00 0.00 0.00 2.69
57 58 5.612725 TGTTCCTCTTTTGGCTTTTTGAT 57.387 34.783 0.00 0.00 0.00 2.57
58 59 5.988287 TGTTCCTCTTTTGGCTTTTTGATT 58.012 33.333 0.00 0.00 0.00 2.57
59 60 6.413892 TGTTCCTCTTTTGGCTTTTTGATTT 58.586 32.000 0.00 0.00 0.00 2.17
60 61 6.883756 TGTTCCTCTTTTGGCTTTTTGATTTT 59.116 30.769 0.00 0.00 0.00 1.82
61 62 7.065683 TGTTCCTCTTTTGGCTTTTTGATTTTC 59.934 33.333 0.00 0.00 0.00 2.29
62 63 5.752955 TCCTCTTTTGGCTTTTTGATTTTCG 59.247 36.000 0.00 0.00 0.00 3.46
63 64 5.752955 CCTCTTTTGGCTTTTTGATTTTCGA 59.247 36.000 0.00 0.00 0.00 3.71
64 65 6.292328 CCTCTTTTGGCTTTTTGATTTTCGAC 60.292 38.462 0.00 0.00 0.00 4.20
65 66 6.337356 TCTTTTGGCTTTTTGATTTTCGACT 58.663 32.000 0.00 0.00 0.00 4.18
66 67 5.964887 TTTGGCTTTTTGATTTTCGACTG 57.035 34.783 0.00 0.00 0.00 3.51
67 68 3.976169 TGGCTTTTTGATTTTCGACTGG 58.024 40.909 0.00 0.00 0.00 4.00
68 69 3.383185 TGGCTTTTTGATTTTCGACTGGT 59.617 39.130 0.00 0.00 0.00 4.00
69 70 4.142049 TGGCTTTTTGATTTTCGACTGGTT 60.142 37.500 0.00 0.00 0.00 3.67
70 71 4.808895 GGCTTTTTGATTTTCGACTGGTTT 59.191 37.500 0.00 0.00 0.00 3.27
71 72 5.293324 GGCTTTTTGATTTTCGACTGGTTTT 59.707 36.000 0.00 0.00 0.00 2.43
72 73 6.410845 GCTTTTTGATTTTCGACTGGTTTTC 58.589 36.000 0.00 0.00 0.00 2.29
73 74 6.561945 TTTTTGATTTTCGACTGGTTTTCG 57.438 33.333 0.00 0.00 37.85 3.46
74 75 5.487153 TTTGATTTTCGACTGGTTTTCGA 57.513 34.783 0.00 0.00 43.59 3.71
101 102 9.651913 AAAAAGAAGTAAGAAAAATCTGTTGCA 57.348 25.926 0.00 0.00 0.00 4.08
102 103 9.822185 AAAAGAAGTAAGAAAAATCTGTTGCAT 57.178 25.926 0.00 0.00 0.00 3.96
103 104 8.807667 AAGAAGTAAGAAAAATCTGTTGCATG 57.192 30.769 0.00 0.00 0.00 4.06
104 105 7.373493 AGAAGTAAGAAAAATCTGTTGCATGG 58.627 34.615 0.00 0.00 0.00 3.66
105 106 6.655078 AGTAAGAAAAATCTGTTGCATGGT 57.345 33.333 0.00 0.00 0.00 3.55
106 107 6.449698 AGTAAGAAAAATCTGTTGCATGGTG 58.550 36.000 0.00 0.00 0.00 4.17
107 108 4.942761 AGAAAAATCTGTTGCATGGTGT 57.057 36.364 0.00 0.00 0.00 4.16
108 109 4.624015 AGAAAAATCTGTTGCATGGTGTG 58.376 39.130 0.00 0.00 0.00 3.82
118 119 3.344703 CATGGTGTGCTTCTGGGAA 57.655 52.632 0.00 0.00 0.00 3.97
119 120 1.619654 CATGGTGTGCTTCTGGGAAA 58.380 50.000 0.00 0.00 0.00 3.13
120 121 1.962807 CATGGTGTGCTTCTGGGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
121 122 1.691196 TGGTGTGCTTCTGGGAAAAG 58.309 50.000 0.00 0.00 0.00 2.27
122 123 1.214175 TGGTGTGCTTCTGGGAAAAGA 59.786 47.619 0.00 0.00 0.00 2.52
123 124 2.306847 GGTGTGCTTCTGGGAAAAGAA 58.693 47.619 0.00 0.00 34.97 2.52
124 125 2.693074 GGTGTGCTTCTGGGAAAAGAAA 59.307 45.455 0.00 0.00 35.79 2.52
125 126 3.321968 GGTGTGCTTCTGGGAAAAGAAAT 59.678 43.478 0.00 0.00 35.79 2.17
126 127 4.522789 GGTGTGCTTCTGGGAAAAGAAATA 59.477 41.667 0.00 0.00 35.79 1.40
127 128 5.185828 GGTGTGCTTCTGGGAAAAGAAATAT 59.814 40.000 0.00 0.00 35.79 1.28
128 129 6.095377 GTGTGCTTCTGGGAAAAGAAATATG 58.905 40.000 0.00 0.00 35.79 1.78
129 130 5.774690 TGTGCTTCTGGGAAAAGAAATATGT 59.225 36.000 0.00 0.00 35.79 2.29
130 131 6.095377 GTGCTTCTGGGAAAAGAAATATGTG 58.905 40.000 0.00 0.00 35.79 3.21
131 132 5.105063 GCTTCTGGGAAAAGAAATATGTGC 58.895 41.667 0.00 0.00 35.79 4.57
132 133 5.105595 GCTTCTGGGAAAAGAAATATGTGCT 60.106 40.000 0.00 0.00 35.79 4.40
133 134 6.573094 GCTTCTGGGAAAAGAAATATGTGCTT 60.573 38.462 0.00 0.00 35.79 3.91
134 135 6.515272 TCTGGGAAAAGAAATATGTGCTTC 57.485 37.500 0.00 0.00 0.00 3.86
135 136 6.248433 TCTGGGAAAAGAAATATGTGCTTCT 58.752 36.000 0.00 0.00 33.25 2.85
136 137 6.375455 TCTGGGAAAAGAAATATGTGCTTCTC 59.625 38.462 0.00 0.00 30.57 2.87
137 138 5.123820 TGGGAAAAGAAATATGTGCTTCTCG 59.876 40.000 0.00 0.00 30.57 4.04
138 139 5.354234 GGGAAAAGAAATATGTGCTTCTCGA 59.646 40.000 0.00 0.00 30.57 4.04
139 140 6.128007 GGGAAAAGAAATATGTGCTTCTCGAA 60.128 38.462 0.00 0.00 30.57 3.71
140 141 7.305474 GGAAAAGAAATATGTGCTTCTCGAAA 58.695 34.615 0.00 0.00 30.57 3.46
141 142 7.807907 GGAAAAGAAATATGTGCTTCTCGAAAA 59.192 33.333 0.00 0.00 30.57 2.29
142 143 8.733857 AAAAGAAATATGTGCTTCTCGAAAAG 57.266 30.769 0.00 0.00 30.57 2.27
143 144 6.428385 AGAAATATGTGCTTCTCGAAAAGG 57.572 37.500 0.00 0.00 0.00 3.11
144 145 5.940470 AGAAATATGTGCTTCTCGAAAAGGT 59.060 36.000 0.00 0.00 0.00 3.50
145 146 7.103641 AGAAATATGTGCTTCTCGAAAAGGTA 58.896 34.615 0.00 0.00 0.00 3.08
146 147 7.606456 AGAAATATGTGCTTCTCGAAAAGGTAA 59.394 33.333 0.00 0.00 0.00 2.85
147 148 7.681939 AATATGTGCTTCTCGAAAAGGTAAA 57.318 32.000 0.00 0.00 0.00 2.01
148 149 4.806342 TGTGCTTCTCGAAAAGGTAAAC 57.194 40.909 0.00 0.00 0.00 2.01
149 150 4.193090 TGTGCTTCTCGAAAAGGTAAACA 58.807 39.130 0.00 0.00 0.00 2.83
150 151 4.636648 TGTGCTTCTCGAAAAGGTAAACAA 59.363 37.500 0.00 0.00 0.00 2.83
151 152 5.124138 TGTGCTTCTCGAAAAGGTAAACAAA 59.876 36.000 0.00 0.00 0.00 2.83
152 153 6.031471 GTGCTTCTCGAAAAGGTAAACAAAA 58.969 36.000 0.00 0.00 0.00 2.44
153 154 6.196538 GTGCTTCTCGAAAAGGTAAACAAAAG 59.803 38.462 0.00 0.00 0.00 2.27
154 155 6.094325 TGCTTCTCGAAAAGGTAAACAAAAGA 59.906 34.615 0.00 0.00 0.00 2.52
155 156 6.970613 GCTTCTCGAAAAGGTAAACAAAAGAA 59.029 34.615 0.00 0.00 0.00 2.52
156 157 7.486870 GCTTCTCGAAAAGGTAAACAAAAGAAA 59.513 33.333 0.00 0.00 0.00 2.52
157 158 9.349145 CTTCTCGAAAAGGTAAACAAAAGAAAA 57.651 29.630 0.00 0.00 0.00 2.29
158 159 9.694137 TTCTCGAAAAGGTAAACAAAAGAAAAA 57.306 25.926 0.00 0.00 0.00 1.94
185 186 4.469657 ACAACCATTGTGATGTAACACCT 58.530 39.130 0.00 0.00 43.48 4.00
191 192 5.354234 CCATTGTGATGTAACACCTTACTCC 59.646 44.000 0.00 0.00 39.69 3.85
193 194 6.921486 TTGTGATGTAACACCTTACTCCTA 57.079 37.500 0.00 0.00 39.69 2.94
205 206 4.217983 ACCTTACTCCTACTTGTGTTCTCG 59.782 45.833 0.00 0.00 0.00 4.04
217 218 9.227490 CTACTTGTGTTCTCGATGTTCTAATAG 57.773 37.037 0.00 0.00 0.00 1.73
218 219 7.827701 ACTTGTGTTCTCGATGTTCTAATAGA 58.172 34.615 0.00 0.00 0.00 1.98
219 220 8.470805 ACTTGTGTTCTCGATGTTCTAATAGAT 58.529 33.333 0.00 0.00 0.00 1.98
220 221 8.634475 TTGTGTTCTCGATGTTCTAATAGATG 57.366 34.615 0.00 0.00 0.00 2.90
221 222 6.697455 TGTGTTCTCGATGTTCTAATAGATGC 59.303 38.462 0.00 0.00 0.00 3.91
222 223 6.920758 GTGTTCTCGATGTTCTAATAGATGCT 59.079 38.462 0.00 0.00 0.00 3.79
223 224 6.920210 TGTTCTCGATGTTCTAATAGATGCTG 59.080 38.462 0.00 0.00 0.00 4.41
232 233 8.893219 TGTTCTAATAGATGCTGGATTACAAG 57.107 34.615 0.00 0.00 0.00 3.16
254 255 6.782082 AGTCTTGCTTTTTCTCTTTCCTTT 57.218 33.333 0.00 0.00 0.00 3.11
258 259 5.276461 TGCTTTTTCTCTTTCCTTTTCCC 57.724 39.130 0.00 0.00 0.00 3.97
288 289 6.019156 GTGATGAGTGCTAGTTTTCTCTATGC 60.019 42.308 0.00 0.00 0.00 3.14
289 290 4.759782 TGAGTGCTAGTTTTCTCTATGCC 58.240 43.478 0.00 0.00 0.00 4.40
290 291 4.467795 TGAGTGCTAGTTTTCTCTATGCCT 59.532 41.667 0.00 0.00 0.00 4.75
291 292 5.017294 AGTGCTAGTTTTCTCTATGCCTC 57.983 43.478 0.00 0.00 0.00 4.70
292 293 4.714308 AGTGCTAGTTTTCTCTATGCCTCT 59.286 41.667 0.00 0.00 0.00 3.69
293 294 5.894393 AGTGCTAGTTTTCTCTATGCCTCTA 59.106 40.000 0.00 0.00 0.00 2.43
294 295 6.553100 AGTGCTAGTTTTCTCTATGCCTCTAT 59.447 38.462 0.00 0.00 0.00 1.98
295 296 6.644592 GTGCTAGTTTTCTCTATGCCTCTATG 59.355 42.308 0.00 0.00 0.00 2.23
311 312 1.764723 CTATGGTCAGGTCAGGATGCA 59.235 52.381 0.00 0.00 34.76 3.96
317 318 1.487976 TCAGGTCAGGATGCATCTTCC 59.512 52.381 25.28 16.21 34.76 3.46
340 342 0.603975 AAGGTTGAGCGAGGAAGCAC 60.604 55.000 0.00 0.00 40.15 4.40
343 345 1.405526 GGTTGAGCGAGGAAGCACATA 60.406 52.381 0.00 0.00 37.54 2.29
354 356 5.542779 GAGGAAGCACATAGAAATCCGTAT 58.457 41.667 0.00 0.00 32.22 3.06
394 396 5.648092 AGGAAACTTGGAAAATACCGATCAG 59.352 40.000 0.00 0.00 37.44 2.90
429 431 2.162408 CCTTGCTACTGTTTTAGCCTGC 59.838 50.000 0.00 0.00 43.43 4.85
443 445 2.241160 AGCCTGCATGTGATTTGTTGA 58.759 42.857 0.00 0.00 0.00 3.18
479 481 8.659925 ATCTCTCTTGATGCATTAACTTACAG 57.340 34.615 0.00 0.00 0.00 2.74
486 488 5.808540 TGATGCATTAACTTACAGTCGTACC 59.191 40.000 0.00 0.00 0.00 3.34
554 558 6.039941 TGTTCATTGGGGTTTACAAACTACAG 59.960 38.462 4.93 0.00 38.89 2.74
580 584 1.203187 ACTCAGCCAAGACTGGACCTA 60.203 52.381 0.00 0.00 46.92 3.08
593 597 1.273041 TGGACCTAGCTCCTGCACTAA 60.273 52.381 5.67 0.00 42.74 2.24
621 625 4.285292 CACATTTCTCTTGAGTGCACAAC 58.715 43.478 21.04 13.11 0.00 3.32
623 627 4.036027 ACATTTCTCTTGAGTGCACAACAG 59.964 41.667 21.04 11.05 0.00 3.16
665 669 1.618861 CTCTGTGACCACGAACGATC 58.381 55.000 0.14 0.00 0.00 3.69
679 683 1.518572 CGATCGGTCCAAAGTCCGG 60.519 63.158 7.38 0.00 43.78 5.14
692 696 0.757188 AGTCCGGACTATGCCCTGAG 60.757 60.000 35.59 0.00 40.43 3.35
718 726 5.001232 TGAAAGCAACCTATACAAGACACC 58.999 41.667 0.00 0.00 0.00 4.16
726 734 2.665649 ATACAAGACACCGATTCGCA 57.334 45.000 0.00 0.00 0.00 5.10
747 755 0.611896 AAGATTCCCCGCCCAAACAG 60.612 55.000 0.00 0.00 0.00 3.16
749 757 1.000896 ATTCCCCGCCCAAACAGAG 60.001 57.895 0.00 0.00 0.00 3.35
750 758 3.860930 TTCCCCGCCCAAACAGAGC 62.861 63.158 0.00 0.00 0.00 4.09
751 759 4.659172 CCCCGCCCAAACAGAGCA 62.659 66.667 0.00 0.00 0.00 4.26
753 761 2.032528 CCGCCCAAACAGAGCAGA 59.967 61.111 0.00 0.00 0.00 4.26
754 762 2.037136 CCGCCCAAACAGAGCAGAG 61.037 63.158 0.00 0.00 0.00 3.35
755 763 2.037136 CGCCCAAACAGAGCAGAGG 61.037 63.158 0.00 0.00 0.00 3.69
756 764 1.676967 GCCCAAACAGAGCAGAGGG 60.677 63.158 0.00 0.00 39.33 4.30
757 765 1.763770 CCCAAACAGAGCAGAGGGT 59.236 57.895 0.00 0.00 0.00 4.34
758 766 0.984230 CCCAAACAGAGCAGAGGGTA 59.016 55.000 0.00 0.00 0.00 3.69
759 767 1.351017 CCCAAACAGAGCAGAGGGTAA 59.649 52.381 0.00 0.00 0.00 2.85
760 768 2.427506 CCAAACAGAGCAGAGGGTAAC 58.572 52.381 0.00 0.00 0.00 2.50
809 817 1.298859 CTAGGTGCGCCAAGACCAAC 61.299 60.000 20.59 0.00 37.19 3.77
844 852 4.966965 CGAGAGCTCCTTAAACTAGTCA 57.033 45.455 10.93 0.00 0.00 3.41
1012 1020 3.409026 AACTGAAGATGGAGAAAGCGT 57.591 42.857 0.00 0.00 0.00 5.07
1020 1028 0.106708 TGGAGAAAGCGTTGCTCTGT 59.893 50.000 0.00 0.00 38.25 3.41
1047 1055 3.196469 TCTTGATCTTGGTAGCCTCACTG 59.804 47.826 0.00 0.00 0.00 3.66
1133 1185 7.790823 AGGTTCTCTCTCTAAGTACGTAATC 57.209 40.000 0.00 0.00 0.00 1.75
1134 1186 7.337167 AGGTTCTCTCTCTAAGTACGTAATCA 58.663 38.462 0.00 0.00 0.00 2.57
1140 1192 9.583530 CTCTCTCTAAGTACGTAATCATTAACG 57.416 37.037 0.00 0.00 44.47 3.18
1177 1229 5.805728 ACCACTAACACTATCCTTCCTTTG 58.194 41.667 0.00 0.00 0.00 2.77
1221 1273 1.135199 TCAGGATCAAACGTACGCCTC 60.135 52.381 16.72 4.97 0.00 4.70
1244 1296 8.646004 CCTCCTAGCTTGTATACATGCATATAT 58.354 37.037 32.96 20.49 45.90 0.86
1247 1299 9.920133 CCTAGCTTGTATACATGCATATATAGG 57.080 37.037 32.96 28.74 45.90 2.57
1260 1312 7.849322 TGCATATATAGGAGTACTTGGACAA 57.151 36.000 0.00 0.00 0.00 3.18
1266 1318 3.243724 AGGAGTACTTGGACAAAGCTCT 58.756 45.455 0.00 0.00 39.76 4.09
1317 1370 6.507023 CAATGAATTAATCCAGCCTAACACC 58.493 40.000 0.00 0.00 0.00 4.16
1347 1400 0.659957 GCTTGTTGGCGATCCTGATC 59.340 55.000 0.00 0.00 34.56 2.92
1418 1471 2.194326 GCCCAGGGGAAGATCAGC 59.806 66.667 7.91 0.00 37.50 4.26
1451 1504 1.357334 GCTCCTCCGATGACGAGAC 59.643 63.158 0.00 0.00 42.66 3.36
2037 2099 3.387699 TCGATCCCTCAACATAAGCATGA 59.612 43.478 0.00 0.00 35.96 3.07
2053 2115 4.510038 GCATGAGCTTCTTTTCAAGGAA 57.490 40.909 0.00 0.00 37.91 3.36
2054 2116 4.874970 GCATGAGCTTCTTTTCAAGGAAA 58.125 39.130 0.00 0.00 37.91 3.13
2101 2163 7.769272 AAAAATCTTCGCATTCACAAAAAGA 57.231 28.000 0.00 0.00 0.00 2.52
2102 2164 7.769272 AAAATCTTCGCATTCACAAAAAGAA 57.231 28.000 0.00 0.00 0.00 2.52
2103 2165 7.769272 AAATCTTCGCATTCACAAAAAGAAA 57.231 28.000 0.00 0.00 0.00 2.52
2104 2166 7.769272 AATCTTCGCATTCACAAAAAGAAAA 57.231 28.000 0.00 0.00 0.00 2.29
2105 2167 7.769272 ATCTTCGCATTCACAAAAAGAAAAA 57.231 28.000 0.00 0.00 0.00 1.94
2106 2168 7.769272 TCTTCGCATTCACAAAAAGAAAAAT 57.231 28.000 0.00 0.00 0.00 1.82
2107 2169 8.864069 TCTTCGCATTCACAAAAAGAAAAATA 57.136 26.923 0.00 0.00 0.00 1.40
2108 2170 9.307121 TCTTCGCATTCACAAAAAGAAAAATAA 57.693 25.926 0.00 0.00 0.00 1.40
2109 2171 9.913451 CTTCGCATTCACAAAAAGAAAAATAAA 57.087 25.926 0.00 0.00 0.00 1.40
2110 2172 9.913451 TTCGCATTCACAAAAAGAAAAATAAAG 57.087 25.926 0.00 0.00 0.00 1.85
2111 2173 9.307121 TCGCATTCACAAAAAGAAAAATAAAGA 57.693 25.926 0.00 0.00 0.00 2.52
2112 2174 9.913451 CGCATTCACAAAAAGAAAAATAAAGAA 57.087 25.926 0.00 0.00 0.00 2.52
2152 2214 9.723601 AAATTTGCAAAGCCATCTTATCTTTTA 57.276 25.926 18.19 0.00 31.02 1.52
2160 2222 6.125029 AGCCATCTTATCTTTTATGTGCTGT 58.875 36.000 0.00 0.00 30.12 4.40
2496 2562 0.605589 ACTGAGAAGGAACTCGGCAG 59.394 55.000 0.00 0.00 44.39 4.85
2657 2726 3.068165 TGGATGAATTCATAGACTCGCGT 59.932 43.478 20.75 0.00 36.57 6.01
2726 2795 0.322975 GAGTCCTCTGTGTGGCACAT 59.677 55.000 24.95 4.47 43.71 3.21
2839 2908 2.725723 CGATTTTTGCATCACACACACC 59.274 45.455 0.00 0.00 0.00 4.16
3038 4939 0.693049 AGAGGTGCGGAATGAAGGTT 59.307 50.000 0.00 0.00 0.00 3.50
3039 4940 0.804989 GAGGTGCGGAATGAAGGTTG 59.195 55.000 0.00 0.00 0.00 3.77
3050 4951 6.368213 CGGAATGAAGGTTGTGTAAAGTAAC 58.632 40.000 0.00 0.00 0.00 2.50
3071 4972 8.855110 AGTAACAATGTCATGTATTTTGAACCA 58.145 29.630 0.00 0.00 32.02 3.67
3101 5002 5.954296 ATTTTCTGAACTCACTGTCCATG 57.046 39.130 0.00 0.00 0.00 3.66
3102 5003 2.462456 TCTGAACTCACTGTCCATGC 57.538 50.000 0.00 0.00 0.00 4.06
3222 5123 5.746721 GTGTAGTTCACATTTTGTCCAAACC 59.253 40.000 0.00 0.00 45.51 3.27
3235 5136 5.261209 TGTCCAAACCAAGAAGAACAATG 57.739 39.130 0.00 0.00 0.00 2.82
3245 5146 3.157087 AGAAGAACAATGGCGTGGAATT 58.843 40.909 0.00 0.00 0.00 2.17
3308 5211 1.275856 TGCCAAAGCTATGCAAAAGGG 59.724 47.619 0.00 0.00 40.80 3.95
3331 5234 5.590259 GGGTATTGCACTTATGAACTGTGAT 59.410 40.000 0.00 0.00 33.95 3.06
3332 5235 6.765989 GGGTATTGCACTTATGAACTGTGATA 59.234 38.462 0.00 0.00 33.95 2.15
3333 5236 7.445402 GGGTATTGCACTTATGAACTGTGATAT 59.555 37.037 0.00 0.00 33.95 1.63
3334 5237 8.840321 GGTATTGCACTTATGAACTGTGATATT 58.160 33.333 0.00 0.00 33.95 1.28
3335 5238 9.655769 GTATTGCACTTATGAACTGTGATATTG 57.344 33.333 0.00 0.00 33.95 1.90
3336 5239 6.682423 TGCACTTATGAACTGTGATATTGG 57.318 37.500 0.00 0.00 33.95 3.16
3337 5240 5.066375 TGCACTTATGAACTGTGATATTGGC 59.934 40.000 0.00 0.00 33.95 4.52
3338 5241 5.066375 GCACTTATGAACTGTGATATTGGCA 59.934 40.000 0.00 0.00 33.95 4.92
3339 5242 6.722301 CACTTATGAACTGTGATATTGGCAG 58.278 40.000 0.00 0.00 33.95 4.85
3340 5243 5.297776 ACTTATGAACTGTGATATTGGCAGC 59.702 40.000 0.00 0.00 33.87 5.25
3341 5244 2.368439 TGAACTGTGATATTGGCAGCC 58.632 47.619 3.66 3.66 33.87 4.85
3342 5245 2.025981 TGAACTGTGATATTGGCAGCCT 60.026 45.455 14.15 0.00 33.87 4.58
3343 5246 2.814805 ACTGTGATATTGGCAGCCTT 57.185 45.000 14.15 2.56 33.87 4.35
3344 5247 3.931907 ACTGTGATATTGGCAGCCTTA 57.068 42.857 14.15 5.02 33.87 2.69
3345 5248 4.235079 ACTGTGATATTGGCAGCCTTAA 57.765 40.909 14.15 0.00 33.87 1.85
3346 5249 4.202441 ACTGTGATATTGGCAGCCTTAAG 58.798 43.478 14.15 0.00 33.87 1.85
3347 5250 4.080356 ACTGTGATATTGGCAGCCTTAAGA 60.080 41.667 14.15 0.00 33.87 2.10
3348 5251 5.052693 TGTGATATTGGCAGCCTTAAGAT 57.947 39.130 14.15 1.73 0.00 2.40
3349 5252 5.448654 TGTGATATTGGCAGCCTTAAGATT 58.551 37.500 14.15 0.00 0.00 2.40
3350 5253 5.300034 TGTGATATTGGCAGCCTTAAGATTG 59.700 40.000 14.15 3.02 0.00 2.67
3351 5254 4.828939 TGATATTGGCAGCCTTAAGATTGG 59.171 41.667 14.15 0.00 0.00 3.16
3352 5255 2.603075 TTGGCAGCCTTAAGATTGGT 57.397 45.000 14.15 0.00 0.00 3.67
3353 5256 2.603075 TGGCAGCCTTAAGATTGGTT 57.397 45.000 14.15 0.00 0.00 3.67
3354 5257 2.446435 TGGCAGCCTTAAGATTGGTTC 58.554 47.619 14.15 0.00 0.00 3.62
3355 5258 1.751351 GGCAGCCTTAAGATTGGTTCC 59.249 52.381 3.29 0.00 0.00 3.62
3356 5259 2.446435 GCAGCCTTAAGATTGGTTCCA 58.554 47.619 3.36 0.00 0.00 3.53
3357 5260 2.164422 GCAGCCTTAAGATTGGTTCCAC 59.836 50.000 3.36 0.00 0.00 4.02
3358 5261 3.690460 CAGCCTTAAGATTGGTTCCACT 58.310 45.455 3.36 0.00 0.00 4.00
3359 5262 4.082125 CAGCCTTAAGATTGGTTCCACTT 58.918 43.478 3.36 0.00 0.00 3.16
3360 5263 4.156739 CAGCCTTAAGATTGGTTCCACTTC 59.843 45.833 3.36 0.00 0.00 3.01
3361 5264 3.444034 GCCTTAAGATTGGTTCCACTTCC 59.556 47.826 3.36 0.00 0.00 3.46
3362 5265 4.662278 CCTTAAGATTGGTTCCACTTCCA 58.338 43.478 3.36 0.00 0.00 3.53
3363 5266 4.459337 CCTTAAGATTGGTTCCACTTCCAC 59.541 45.833 3.36 0.00 33.12 4.02
3364 5267 2.185004 AGATTGGTTCCACTTCCACG 57.815 50.000 0.00 0.00 33.12 4.94
3365 5268 1.420138 AGATTGGTTCCACTTCCACGT 59.580 47.619 0.00 0.00 33.12 4.49
3366 5269 1.535462 GATTGGTTCCACTTCCACGTG 59.465 52.381 9.08 9.08 33.12 4.49
3372 5275 4.377370 CACTTCCACGTGGATGCA 57.623 55.556 37.15 24.28 44.98 3.96
3373 5276 2.858622 CACTTCCACGTGGATGCAT 58.141 52.632 37.15 23.32 44.98 3.96
3374 5277 0.448990 CACTTCCACGTGGATGCATG 59.551 55.000 37.15 28.29 44.98 4.06
3375 5278 1.308069 ACTTCCACGTGGATGCATGC 61.308 55.000 37.15 11.82 44.98 4.06
3392 5295 4.079787 TGCATGCTATTCCCTCTAGGTTTT 60.080 41.667 20.33 0.00 36.75 2.43
3397 5300 5.962031 TGCTATTCCCTCTAGGTTTTCTACA 59.038 40.000 0.00 0.00 36.75 2.74
3438 5341 3.498397 CAGTACAAAGAGCATGAAACGGT 59.502 43.478 0.00 0.00 0.00 4.83
3473 5376 8.157476 AGTGGAAGTTCAGTTATGTAATTCACT 58.843 33.333 5.01 1.43 33.90 3.41
3520 5423 2.301346 CAGCATGATAGGGTGGTTTCC 58.699 52.381 0.00 0.00 39.69 3.13
3594 5497 7.362662 GTTTCTGTTCATGTTCAGAATGCTAA 58.637 34.615 24.06 13.50 45.77 3.09
3613 5516 3.715628 AATCTGCAAACACAGTGGAAC 57.284 42.857 5.31 0.00 38.84 3.62
3653 5556 0.323087 AAAGGGCCGCGGATTAACTT 60.323 50.000 33.48 20.45 0.00 2.66
3654 5557 0.746923 AAGGGCCGCGGATTAACTTC 60.747 55.000 33.48 8.16 0.00 3.01
3655 5558 1.450669 GGGCCGCGGATTAACTTCA 60.451 57.895 33.48 0.00 0.00 3.02
3656 5559 0.818040 GGGCCGCGGATTAACTTCAT 60.818 55.000 33.48 0.00 0.00 2.57
3657 5560 1.541670 GGGCCGCGGATTAACTTCATA 60.542 52.381 33.48 0.00 0.00 2.15
3658 5561 1.529865 GGCCGCGGATTAACTTCATAC 59.470 52.381 33.48 5.54 0.00 2.39
3689 5608 6.248839 CGCGTGAACAGTAAAACTAAAACAAA 59.751 34.615 0.00 0.00 0.00 2.83
3737 5656 8.027440 TGATTTTTCTTTGTGTCAAACTTTGG 57.973 30.769 1.62 0.00 0.00 3.28
3795 5714 5.653769 AGAATACATTCATGGAAGTTGTGGG 59.346 40.000 4.85 0.00 39.23 4.61
3906 5826 7.171848 TTCATGATGAAACTTTGCAAGAATTGG 59.828 33.333 5.21 0.00 38.99 3.16
3978 5909 5.637006 TTGGATTTTATTGTTCACCCGAG 57.363 39.130 0.00 0.00 0.00 4.63
4007 5938 4.320910 TCGAGCTGACGAGGACAT 57.679 55.556 0.00 0.00 37.37 3.06
4015 5946 2.744202 GCTGACGAGGACATTTTCACAT 59.256 45.455 0.00 0.00 0.00 3.21
4027 5958 7.284034 AGGACATTTTCACATATAAAGAGGCAG 59.716 37.037 0.00 0.00 0.00 4.85
4061 5992 4.818642 TGTCCCGTGAATTTGTTATACGA 58.181 39.130 0.00 0.00 36.94 3.43
4077 6008 7.709947 TGTTATACGAGAATGTACAACCCTAG 58.290 38.462 0.00 0.63 32.15 3.02
4098 6029 9.343539 CCCTAGATATATTTGCTAAATTAGGGC 57.656 37.037 15.13 0.00 38.60 5.19
4117 6048 6.942532 AGGGCATATGTGTAATAGTTGTTG 57.057 37.500 4.29 0.00 0.00 3.33
4119 6050 5.507315 GGGCATATGTGTAATAGTTGTTGCC 60.507 44.000 4.29 0.00 43.94 4.52
4162 6095 8.704668 ACCTTTCTTCATTAGTTTGGACATTTT 58.295 29.630 0.00 0.00 0.00 1.82
4175 6108 5.643379 TGGACATTTTGAGTAATTGGCTC 57.357 39.130 5.28 5.28 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.195411 ACGAAAACGTGTACAGAAAAATATAGA 57.805 29.630 0.00 0.00 0.00 1.98
8 9 9.838975 TCTAATATACGAAAACGTGTACAGAAA 57.161 29.630 0.00 0.00 0.00 2.52
10 11 9.442033 CATCTAATATACGAAAACGTGTACAGA 57.558 33.333 0.00 9.35 0.00 3.41
11 12 9.229784 ACATCTAATATACGAAAACGTGTACAG 57.770 33.333 0.00 5.06 0.00 2.74
12 13 9.571810 AACATCTAATATACGAAAACGTGTACA 57.428 29.630 5.54 0.00 0.00 2.90
14 15 9.236691 GGAACATCTAATATACGAAAACGTGTA 57.763 33.333 5.54 3.83 0.00 2.90
15 16 7.977853 AGGAACATCTAATATACGAAAACGTGT 59.022 33.333 5.54 1.59 0.00 4.49
16 17 8.348983 AGGAACATCTAATATACGAAAACGTG 57.651 34.615 5.54 0.00 0.00 4.49
17 18 8.411683 AGAGGAACATCTAATATACGAAAACGT 58.588 33.333 0.00 0.00 0.00 3.99
18 19 8.798748 AGAGGAACATCTAATATACGAAAACG 57.201 34.615 0.00 0.00 0.00 3.60
22 23 9.542462 CCAAAAGAGGAACATCTAATATACGAA 57.458 33.333 0.00 0.00 0.00 3.85
23 24 7.656137 GCCAAAAGAGGAACATCTAATATACGA 59.344 37.037 0.00 0.00 0.00 3.43
24 25 7.657761 AGCCAAAAGAGGAACATCTAATATACG 59.342 37.037 0.00 0.00 0.00 3.06
25 26 8.910351 AGCCAAAAGAGGAACATCTAATATAC 57.090 34.615 0.00 0.00 0.00 1.47
26 27 9.920946 AAAGCCAAAAGAGGAACATCTAATATA 57.079 29.630 0.00 0.00 0.00 0.86
27 28 8.829373 AAAGCCAAAAGAGGAACATCTAATAT 57.171 30.769 0.00 0.00 0.00 1.28
28 29 8.650143 AAAAGCCAAAAGAGGAACATCTAATA 57.350 30.769 0.00 0.00 0.00 0.98
29 30 7.544804 AAAAGCCAAAAGAGGAACATCTAAT 57.455 32.000 0.00 0.00 0.00 1.73
30 31 6.976934 AAAAGCCAAAAGAGGAACATCTAA 57.023 33.333 0.00 0.00 0.00 2.10
31 32 6.549364 TCAAAAAGCCAAAAGAGGAACATCTA 59.451 34.615 0.00 0.00 0.00 1.98
32 33 5.363580 TCAAAAAGCCAAAAGAGGAACATCT 59.636 36.000 0.00 0.00 0.00 2.90
33 34 5.600696 TCAAAAAGCCAAAAGAGGAACATC 58.399 37.500 0.00 0.00 0.00 3.06
34 35 5.612725 TCAAAAAGCCAAAAGAGGAACAT 57.387 34.783 0.00 0.00 0.00 2.71
35 36 5.612725 ATCAAAAAGCCAAAAGAGGAACA 57.387 34.783 0.00 0.00 0.00 3.18
36 37 6.925610 AAATCAAAAAGCCAAAAGAGGAAC 57.074 33.333 0.00 0.00 0.00 3.62
37 38 6.257630 CGAAAATCAAAAAGCCAAAAGAGGAA 59.742 34.615 0.00 0.00 0.00 3.36
38 39 5.752955 CGAAAATCAAAAAGCCAAAAGAGGA 59.247 36.000 0.00 0.00 0.00 3.71
39 40 5.752955 TCGAAAATCAAAAAGCCAAAAGAGG 59.247 36.000 0.00 0.00 0.00 3.69
40 41 6.476706 AGTCGAAAATCAAAAAGCCAAAAGAG 59.523 34.615 0.00 0.00 0.00 2.85
41 42 6.255453 CAGTCGAAAATCAAAAAGCCAAAAGA 59.745 34.615 0.00 0.00 0.00 2.52
42 43 6.413269 CAGTCGAAAATCAAAAAGCCAAAAG 58.587 36.000 0.00 0.00 0.00 2.27
43 44 5.293079 CCAGTCGAAAATCAAAAAGCCAAAA 59.707 36.000 0.00 0.00 0.00 2.44
44 45 4.808364 CCAGTCGAAAATCAAAAAGCCAAA 59.192 37.500 0.00 0.00 0.00 3.28
45 46 4.142049 ACCAGTCGAAAATCAAAAAGCCAA 60.142 37.500 0.00 0.00 0.00 4.52
46 47 3.383185 ACCAGTCGAAAATCAAAAAGCCA 59.617 39.130 0.00 0.00 0.00 4.75
47 48 3.977427 ACCAGTCGAAAATCAAAAAGCC 58.023 40.909 0.00 0.00 0.00 4.35
48 49 5.966636 AAACCAGTCGAAAATCAAAAAGC 57.033 34.783 0.00 0.00 0.00 3.51
49 50 6.470877 TCGAAAACCAGTCGAAAATCAAAAAG 59.529 34.615 0.00 0.00 44.10 2.27
50 51 6.323266 TCGAAAACCAGTCGAAAATCAAAAA 58.677 32.000 0.00 0.00 44.10 1.94
51 52 5.881447 TCGAAAACCAGTCGAAAATCAAAA 58.119 33.333 0.00 0.00 44.10 2.44
52 53 5.487153 TCGAAAACCAGTCGAAAATCAAA 57.513 34.783 0.00 0.00 44.10 2.69
75 76 9.651913 TGCAACAGATTTTTCTTACTTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
76 77 9.822185 ATGCAACAGATTTTTCTTACTTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
77 78 9.252962 CATGCAACAGATTTTTCTTACTTCTTT 57.747 29.630 0.00 0.00 0.00 2.52
78 79 7.869429 CCATGCAACAGATTTTTCTTACTTCTT 59.131 33.333 0.00 0.00 0.00 2.52
79 80 7.014615 ACCATGCAACAGATTTTTCTTACTTCT 59.985 33.333 0.00 0.00 0.00 2.85
80 81 7.115378 CACCATGCAACAGATTTTTCTTACTTC 59.885 37.037 0.00 0.00 0.00 3.01
81 82 6.925165 CACCATGCAACAGATTTTTCTTACTT 59.075 34.615 0.00 0.00 0.00 2.24
82 83 6.040842 ACACCATGCAACAGATTTTTCTTACT 59.959 34.615 0.00 0.00 0.00 2.24
83 84 6.144402 CACACCATGCAACAGATTTTTCTTAC 59.856 38.462 0.00 0.00 0.00 2.34
84 85 6.215121 CACACCATGCAACAGATTTTTCTTA 58.785 36.000 0.00 0.00 0.00 2.10
85 86 5.051816 CACACCATGCAACAGATTTTTCTT 58.948 37.500 0.00 0.00 0.00 2.52
86 87 4.624015 CACACCATGCAACAGATTTTTCT 58.376 39.130 0.00 0.00 0.00 2.52
87 88 4.977741 CACACCATGCAACAGATTTTTC 57.022 40.909 0.00 0.00 0.00 2.29
100 101 1.619654 TTTCCCAGAAGCACACCATG 58.380 50.000 0.00 0.00 0.00 3.66
101 102 2.158475 TCTTTTCCCAGAAGCACACCAT 60.158 45.455 0.00 0.00 0.00 3.55
102 103 1.214175 TCTTTTCCCAGAAGCACACCA 59.786 47.619 0.00 0.00 0.00 4.17
103 104 1.981256 TCTTTTCCCAGAAGCACACC 58.019 50.000 0.00 0.00 0.00 4.16
104 105 4.590850 ATTTCTTTTCCCAGAAGCACAC 57.409 40.909 0.00 0.00 34.22 3.82
105 106 5.774690 ACATATTTCTTTTCCCAGAAGCACA 59.225 36.000 0.00 0.00 34.22 4.57
106 107 6.095377 CACATATTTCTTTTCCCAGAAGCAC 58.905 40.000 0.00 0.00 34.22 4.40
107 108 5.336690 GCACATATTTCTTTTCCCAGAAGCA 60.337 40.000 0.00 0.00 34.22 3.91
108 109 5.105063 GCACATATTTCTTTTCCCAGAAGC 58.895 41.667 0.00 0.00 34.22 3.86
109 110 6.521151 AGCACATATTTCTTTTCCCAGAAG 57.479 37.500 0.00 0.00 34.22 2.85
110 111 6.721208 AGAAGCACATATTTCTTTTCCCAGAA 59.279 34.615 0.00 0.00 29.64 3.02
111 112 6.248433 AGAAGCACATATTTCTTTTCCCAGA 58.752 36.000 0.00 0.00 29.64 3.86
112 113 6.521151 AGAAGCACATATTTCTTTTCCCAG 57.479 37.500 0.00 0.00 29.64 4.45
113 114 5.123820 CGAGAAGCACATATTTCTTTTCCCA 59.876 40.000 0.00 0.00 33.97 4.37
114 115 5.354234 TCGAGAAGCACATATTTCTTTTCCC 59.646 40.000 0.00 0.00 33.97 3.97
115 116 6.422776 TCGAGAAGCACATATTTCTTTTCC 57.577 37.500 0.00 0.00 33.97 3.13
116 117 8.728088 TTTTCGAGAAGCACATATTTCTTTTC 57.272 30.769 0.00 0.00 33.97 2.29
117 118 7.809806 CCTTTTCGAGAAGCACATATTTCTTTT 59.190 33.333 10.12 0.00 33.97 2.27
118 119 7.040409 ACCTTTTCGAGAAGCACATATTTCTTT 60.040 33.333 10.12 0.00 33.97 2.52
119 120 6.431234 ACCTTTTCGAGAAGCACATATTTCTT 59.569 34.615 10.12 0.00 33.97 2.52
120 121 5.940470 ACCTTTTCGAGAAGCACATATTTCT 59.060 36.000 10.12 0.00 36.41 2.52
121 122 6.183309 ACCTTTTCGAGAAGCACATATTTC 57.817 37.500 10.12 0.00 0.00 2.17
122 123 7.681939 TTACCTTTTCGAGAAGCACATATTT 57.318 32.000 10.12 0.00 0.00 1.40
123 124 7.174253 TGTTTACCTTTTCGAGAAGCACATATT 59.826 33.333 10.12 0.00 0.00 1.28
124 125 6.653320 TGTTTACCTTTTCGAGAAGCACATAT 59.347 34.615 10.12 0.00 0.00 1.78
125 126 5.992829 TGTTTACCTTTTCGAGAAGCACATA 59.007 36.000 10.12 0.00 0.00 2.29
126 127 4.819630 TGTTTACCTTTTCGAGAAGCACAT 59.180 37.500 10.12 0.00 0.00 3.21
127 128 4.193090 TGTTTACCTTTTCGAGAAGCACA 58.807 39.130 10.12 7.05 0.00 4.57
128 129 4.806342 TGTTTACCTTTTCGAGAAGCAC 57.194 40.909 10.12 4.82 0.00 4.40
129 130 5.821516 TTTGTTTACCTTTTCGAGAAGCA 57.178 34.783 10.12 0.05 0.00 3.91
130 131 6.492254 TCTTTTGTTTACCTTTTCGAGAAGC 58.508 36.000 10.12 0.00 0.00 3.86
131 132 8.905103 TTTCTTTTGTTTACCTTTTCGAGAAG 57.095 30.769 8.69 8.69 0.00 2.85
132 133 9.694137 TTTTTCTTTTGTTTACCTTTTCGAGAA 57.306 25.926 0.00 0.00 0.00 2.87
163 164 4.469657 AGGTGTTACATCACAATGGTTGT 58.530 39.130 0.00 0.00 46.75 3.32
164 165 5.452078 AAGGTGTTACATCACAATGGTTG 57.548 39.130 0.00 0.00 39.76 3.77
165 166 6.303839 AGTAAGGTGTTACATCACAATGGTT 58.696 36.000 0.00 0.00 41.06 3.67
166 167 5.876357 AGTAAGGTGTTACATCACAATGGT 58.124 37.500 0.00 0.00 41.06 3.55
167 168 5.354234 GGAGTAAGGTGTTACATCACAATGG 59.646 44.000 0.00 0.00 41.06 3.16
168 169 6.173339 AGGAGTAAGGTGTTACATCACAATG 58.827 40.000 0.00 0.00 41.06 2.82
169 170 6.374417 AGGAGTAAGGTGTTACATCACAAT 57.626 37.500 0.00 0.00 41.06 2.71
170 171 5.818678 AGGAGTAAGGTGTTACATCACAA 57.181 39.130 0.00 0.00 41.06 3.33
171 172 6.014647 AGTAGGAGTAAGGTGTTACATCACA 58.985 40.000 0.00 0.00 41.06 3.58
172 173 6.527057 AGTAGGAGTAAGGTGTTACATCAC 57.473 41.667 0.00 0.00 41.06 3.06
173 174 6.495872 ACAAGTAGGAGTAAGGTGTTACATCA 59.504 38.462 0.00 0.00 41.06 3.07
174 175 6.812160 CACAAGTAGGAGTAAGGTGTTACATC 59.188 42.308 0.00 0.00 41.06 3.06
175 176 6.269307 ACACAAGTAGGAGTAAGGTGTTACAT 59.731 38.462 0.00 0.00 41.06 2.29
176 177 5.599656 ACACAAGTAGGAGTAAGGTGTTACA 59.400 40.000 0.00 0.00 41.06 2.41
181 182 5.470047 AGAACACAAGTAGGAGTAAGGTG 57.530 43.478 0.00 0.00 0.00 4.00
185 186 5.475909 ACATCGAGAACACAAGTAGGAGTAA 59.524 40.000 0.00 0.00 0.00 2.24
191 192 9.227490 CTATTAGAACATCGAGAACACAAGTAG 57.773 37.037 0.00 0.00 0.00 2.57
193 194 7.827701 TCTATTAGAACATCGAGAACACAAGT 58.172 34.615 0.00 0.00 0.00 3.16
205 206 9.494271 TTGTAATCCAGCATCTATTAGAACATC 57.506 33.333 0.00 0.00 0.00 3.06
217 218 3.944015 AGCAAGACTTGTAATCCAGCATC 59.056 43.478 16.39 0.00 0.00 3.91
218 219 3.960571 AGCAAGACTTGTAATCCAGCAT 58.039 40.909 16.39 0.00 0.00 3.79
219 220 3.423539 AGCAAGACTTGTAATCCAGCA 57.576 42.857 16.39 0.00 0.00 4.41
220 221 4.773323 AAAGCAAGACTTGTAATCCAGC 57.227 40.909 16.39 0.00 39.09 4.85
221 222 6.974965 AGAAAAAGCAAGACTTGTAATCCAG 58.025 36.000 16.39 0.00 39.09 3.86
222 223 6.772716 AGAGAAAAAGCAAGACTTGTAATCCA 59.227 34.615 16.39 0.00 39.09 3.41
223 224 7.208225 AGAGAAAAAGCAAGACTTGTAATCC 57.792 36.000 16.39 0.00 39.09 3.01
232 233 6.477033 GGAAAAGGAAAGAGAAAAAGCAAGAC 59.523 38.462 0.00 0.00 0.00 3.01
254 255 0.038166 GCACTCATCACTTGGGGGAA 59.962 55.000 0.00 0.00 26.12 3.97
258 259 3.340814 AACTAGCACTCATCACTTGGG 57.659 47.619 0.00 0.00 0.00 4.12
288 289 2.461300 TCCTGACCTGACCATAGAGG 57.539 55.000 0.00 0.00 45.67 3.69
289 290 2.036992 GCATCCTGACCTGACCATAGAG 59.963 54.545 0.00 0.00 0.00 2.43
290 291 2.042464 GCATCCTGACCTGACCATAGA 58.958 52.381 0.00 0.00 0.00 1.98
291 292 1.764723 TGCATCCTGACCTGACCATAG 59.235 52.381 0.00 0.00 0.00 2.23
292 293 1.878211 TGCATCCTGACCTGACCATA 58.122 50.000 0.00 0.00 0.00 2.74
293 294 1.142465 GATGCATCCTGACCTGACCAT 59.858 52.381 16.23 0.00 0.00 3.55
294 295 0.543277 GATGCATCCTGACCTGACCA 59.457 55.000 16.23 0.00 0.00 4.02
295 296 0.835941 AGATGCATCCTGACCTGACC 59.164 55.000 23.06 0.00 0.00 4.02
311 312 2.303022 TCGCTCAACCTTTCAGGAAGAT 59.697 45.455 0.00 0.00 37.67 2.40
317 318 2.072298 CTTCCTCGCTCAACCTTTCAG 58.928 52.381 0.00 0.00 0.00 3.02
340 342 7.278868 GGCAGGATTAAGATACGGATTTCTATG 59.721 40.741 0.00 0.00 0.00 2.23
343 345 5.308237 AGGCAGGATTAAGATACGGATTTCT 59.692 40.000 0.00 0.00 0.00 2.52
354 356 6.388619 AGTTTCCTTTAGGCAGGATTAAGA 57.611 37.500 0.00 0.00 42.89 2.10
388 390 3.947834 AGGAAAATTAGCCAACCTGATCG 59.052 43.478 0.00 0.00 0.00 3.69
391 393 3.258123 GCAAGGAAAATTAGCCAACCTGA 59.742 43.478 0.00 0.00 0.00 3.86
392 394 3.259123 AGCAAGGAAAATTAGCCAACCTG 59.741 43.478 0.00 0.00 0.00 4.00
394 396 3.961480 AGCAAGGAAAATTAGCCAACC 57.039 42.857 0.00 0.00 0.00 3.77
429 431 5.231702 TGAGCCATTTCAACAAATCACATG 58.768 37.500 0.00 0.00 28.97 3.21
443 445 5.706369 GCATCAAGAGAGATATGAGCCATTT 59.294 40.000 0.00 0.00 0.00 2.32
486 488 9.674208 GTTCATTCATACAATTAAAAACATGCG 57.326 29.630 0.00 0.00 0.00 4.73
522 526 4.882842 AAACCCCAATGAACATACCAAC 57.117 40.909 0.00 0.00 0.00 3.77
528 532 6.551601 TGTAGTTTGTAAACCCCAATGAACAT 59.448 34.615 4.00 0.00 39.71 2.71
554 558 0.398318 AGTCTTGGCTGAGTTGGACC 59.602 55.000 0.00 0.00 0.00 4.46
593 597 3.504906 CACTCAAGAGAAATGTGGTGCAT 59.495 43.478 3.73 0.00 40.03 3.96
621 625 3.683822 GTGAGATTGAGGTTCTGCTTCTG 59.316 47.826 0.00 0.00 0.00 3.02
623 627 2.670414 CGTGAGATTGAGGTTCTGCTTC 59.330 50.000 0.00 0.00 0.00 3.86
679 683 3.791245 CTTTCAGTCTCAGGGCATAGTC 58.209 50.000 0.00 0.00 0.00 2.59
692 696 5.932303 TGTCTTGTATAGGTTGCTTTCAGTC 59.068 40.000 0.00 0.00 0.00 3.51
718 726 0.657840 GGGGAATCTTGTGCGAATCG 59.342 55.000 0.00 0.00 0.00 3.34
726 734 0.898326 GTTTGGGCGGGGAATCTTGT 60.898 55.000 0.00 0.00 0.00 3.16
747 755 1.073284 TGGTTTGGTTACCCTCTGCTC 59.927 52.381 0.00 0.00 37.39 4.26
749 757 1.202891 ACTGGTTTGGTTACCCTCTGC 60.203 52.381 0.00 0.00 37.39 4.26
750 758 2.105821 TCACTGGTTTGGTTACCCTCTG 59.894 50.000 0.00 0.00 37.39 3.35
751 759 2.372172 CTCACTGGTTTGGTTACCCTCT 59.628 50.000 0.00 0.00 37.39 3.69
753 761 1.202891 GCTCACTGGTTTGGTTACCCT 60.203 52.381 0.00 0.00 37.39 4.34
754 762 1.244816 GCTCACTGGTTTGGTTACCC 58.755 55.000 0.00 0.00 37.39 3.69
755 763 1.975660 TGCTCACTGGTTTGGTTACC 58.024 50.000 0.00 0.00 38.73 2.85
756 764 2.286772 CGTTGCTCACTGGTTTGGTTAC 60.287 50.000 0.00 0.00 0.00 2.50
757 765 1.944024 CGTTGCTCACTGGTTTGGTTA 59.056 47.619 0.00 0.00 0.00 2.85
758 766 0.738389 CGTTGCTCACTGGTTTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
759 767 1.101049 CCGTTGCTCACTGGTTTGGT 61.101 55.000 0.00 0.00 0.00 3.67
760 768 1.101049 ACCGTTGCTCACTGGTTTGG 61.101 55.000 0.00 0.00 30.79 3.28
761 769 0.029300 CACCGTTGCTCACTGGTTTG 59.971 55.000 0.00 0.00 32.10 2.93
762 770 1.724582 GCACCGTTGCTCACTGGTTT 61.725 55.000 0.00 0.00 46.17 3.27
763 771 2.186826 GCACCGTTGCTCACTGGTT 61.187 57.895 0.00 0.00 46.17 3.67
764 772 2.591715 GCACCGTTGCTCACTGGT 60.592 61.111 0.00 0.00 46.17 4.00
829 837 5.416952 TCCGGTACTTGACTAGTTTAAGGAG 59.583 44.000 19.06 10.43 38.33 3.69
844 852 0.834687 TCTTGCAGGGTCCGGTACTT 60.835 55.000 0.00 0.00 0.00 2.24
1012 1020 5.337089 CCAAGATCAAGACTAGACAGAGCAA 60.337 44.000 0.00 0.00 0.00 3.91
1020 1028 4.873010 AGGCTACCAAGATCAAGACTAGA 58.127 43.478 0.00 0.00 0.00 2.43
1047 1055 2.440980 GGATCACCCTTGCAGCCC 60.441 66.667 0.00 0.00 0.00 5.19
1114 1122 9.583530 CGTTAATGATTACGTACTTAGAGAGAG 57.416 37.037 0.00 0.00 33.33 3.20
1122 1130 5.964758 TGGGTCGTTAATGATTACGTACTT 58.035 37.500 0.00 0.00 38.79 2.24
1124 1132 6.211515 AGATGGGTCGTTAATGATTACGTAC 58.788 40.000 0.00 0.00 38.79 3.67
1126 1134 5.163488 TGAGATGGGTCGTTAATGATTACGT 60.163 40.000 0.00 0.00 38.79 3.57
1127 1135 5.286438 TGAGATGGGTCGTTAATGATTACG 58.714 41.667 0.00 0.00 39.03 3.18
1133 1185 3.871594 GTCCTTGAGATGGGTCGTTAATG 59.128 47.826 0.00 0.00 0.00 1.90
1134 1186 3.118371 GGTCCTTGAGATGGGTCGTTAAT 60.118 47.826 0.00 0.00 0.00 1.40
1140 1192 1.280457 AGTGGTCCTTGAGATGGGTC 58.720 55.000 0.00 0.00 0.00 4.46
1177 1229 0.171231 GTCGCCTTCTGCAATTTCCC 59.829 55.000 0.00 0.00 41.33 3.97
1221 1273 9.920133 CCTATATATGCATGTATACAAGCTAGG 57.080 37.037 27.69 24.09 40.79 3.02
1244 1296 4.417437 AGAGCTTTGTCCAAGTACTCCTA 58.583 43.478 0.00 0.00 34.56 2.94
1245 1297 3.243724 AGAGCTTTGTCCAAGTACTCCT 58.756 45.455 0.00 0.00 34.56 3.69
1246 1298 3.259625 AGAGAGCTTTGTCCAAGTACTCC 59.740 47.826 0.00 0.00 37.43 3.85
1247 1299 4.529109 AGAGAGCTTTGTCCAAGTACTC 57.471 45.455 0.00 0.00 37.21 2.59
1248 1300 5.540719 AGTTAGAGAGCTTTGTCCAAGTACT 59.459 40.000 0.00 0.00 34.56 2.73
1249 1301 5.785243 AGTTAGAGAGCTTTGTCCAAGTAC 58.215 41.667 0.00 0.00 34.56 2.73
1287 1339 4.021981 GGCTGGATTAATTCATTGCCTACC 60.022 45.833 16.40 3.36 34.63 3.18
1292 1344 5.979517 GTGTTAGGCTGGATTAATTCATTGC 59.020 40.000 0.00 0.00 0.00 3.56
1317 1370 1.541588 GCCAACAAGCTACCTGGAAAG 59.458 52.381 11.14 0.00 0.00 2.62
1347 1400 1.705337 GCATCATGACGGGGAACACG 61.705 60.000 0.00 0.00 37.36 4.49
1437 1490 0.028242 CCTTCGTCTCGTCATCGGAG 59.972 60.000 0.00 0.00 37.69 4.63
1788 1841 6.868527 TGATGGATGGATCCTTCTTACTGAGA 60.869 42.308 23.02 0.00 46.04 3.27
1864 1926 3.629398 GTCACTTCCTGCCAATCAATAGG 59.371 47.826 0.00 0.00 0.00 2.57
2077 2139 7.769272 TCTTTTTGTGAATGCGAAGATTTTT 57.231 28.000 0.00 0.00 0.00 1.94
2078 2140 7.769272 TTCTTTTTGTGAATGCGAAGATTTT 57.231 28.000 0.00 0.00 0.00 1.82
2079 2141 7.769272 TTTCTTTTTGTGAATGCGAAGATTT 57.231 28.000 0.00 0.00 0.00 2.17
2080 2142 7.769272 TTTTCTTTTTGTGAATGCGAAGATT 57.231 28.000 0.00 0.00 0.00 2.40
2081 2143 7.769272 TTTTTCTTTTTGTGAATGCGAAGAT 57.231 28.000 0.00 0.00 0.00 2.40
2082 2144 7.769272 ATTTTTCTTTTTGTGAATGCGAAGA 57.231 28.000 0.00 0.00 0.00 2.87
2083 2145 9.913451 TTTATTTTTCTTTTTGTGAATGCGAAG 57.087 25.926 0.00 0.00 0.00 3.79
2084 2146 9.913451 CTTTATTTTTCTTTTTGTGAATGCGAA 57.087 25.926 0.00 0.00 0.00 4.70
2085 2147 9.307121 TCTTTATTTTTCTTTTTGTGAATGCGA 57.693 25.926 0.00 0.00 0.00 5.10
2086 2148 9.913451 TTCTTTATTTTTCTTTTTGTGAATGCG 57.087 25.926 0.00 0.00 0.00 4.73
2119 2181 8.170416 TAAGATGGCTTTGCAAATTTTGCTCTT 61.170 33.333 28.73 25.95 44.81 2.85
2120 2182 6.742082 TAAGATGGCTTTGCAAATTTTGCTCT 60.742 34.615 28.73 19.85 44.81 4.09
2121 2183 5.409214 TAAGATGGCTTTGCAAATTTTGCTC 59.591 36.000 28.73 18.28 44.81 4.26
2122 2184 5.307204 TAAGATGGCTTTGCAAATTTTGCT 58.693 33.333 28.73 11.61 44.81 3.91
2456 2522 5.994054 CAGTGTAACAGGGATATGATTCTGG 59.006 44.000 0.00 0.00 41.43 3.86
2506 2572 6.016276 ACAACCAATGGTGAGAATAACTTGTC 60.016 38.462 5.34 0.00 35.34 3.18
2508 2574 6.331369 ACAACCAATGGTGAGAATAACTTG 57.669 37.500 5.34 0.00 35.34 3.16
2657 2726 8.403236 TCTTCGATATTAACTTCATCTCGAACA 58.597 33.333 0.00 0.00 35.52 3.18
2814 2883 3.180189 GTGTGTGATGCAAAAATCGTGTG 59.820 43.478 0.00 0.00 0.00 3.82
2839 2908 5.501715 CGCTAACAAAGGTAGCATAATGTG 58.498 41.667 13.79 0.00 36.69 3.21
3020 4921 0.804989 CAACCTTCATTCCGCACCTC 59.195 55.000 0.00 0.00 0.00 3.85
3023 4924 0.951558 ACACAACCTTCATTCCGCAC 59.048 50.000 0.00 0.00 0.00 5.34
3030 4931 8.232913 ACATTGTTACTTTACACAACCTTCAT 57.767 30.769 0.00 0.00 35.75 2.57
3050 4951 6.591062 CCCTTGGTTCAAAATACATGACATTG 59.409 38.462 0.00 0.00 0.00 2.82
3068 4969 5.073144 TGAGTTCAGAAAATACTCCCTTGGT 59.927 40.000 0.00 0.00 37.97 3.67
3071 4972 6.183361 ACAGTGAGTTCAGAAAATACTCCCTT 60.183 38.462 0.00 0.00 37.97 3.95
3222 5123 1.879380 TCCACGCCATTGTTCTTCTTG 59.121 47.619 0.00 0.00 0.00 3.02
3235 5136 0.733909 GCTCTTGCAAATTCCACGCC 60.734 55.000 0.00 0.00 39.41 5.68
3256 5157 3.657634 TCTGCAGTTCATGTGAAGAGTC 58.342 45.455 14.67 0.00 34.27 3.36
3260 5161 4.971008 CATCTTCTGCAGTTCATGTGAAG 58.029 43.478 14.67 7.64 40.12 3.02
3308 5211 6.683974 ATCACAGTTCATAAGTGCAATACC 57.316 37.500 0.00 0.00 35.18 2.73
3321 5224 2.025981 AGGCTGCCAATATCACAGTTCA 60.026 45.455 22.65 0.00 33.87 3.18
3331 5234 4.249638 ACCAATCTTAAGGCTGCCAATA 57.750 40.909 22.65 10.76 0.00 1.90
3332 5235 3.105959 ACCAATCTTAAGGCTGCCAAT 57.894 42.857 22.65 11.86 0.00 3.16
3333 5236 2.603075 ACCAATCTTAAGGCTGCCAA 57.397 45.000 22.65 6.35 0.00 4.52
3334 5237 2.446435 GAACCAATCTTAAGGCTGCCA 58.554 47.619 22.65 0.00 0.00 4.92
3335 5238 1.751351 GGAACCAATCTTAAGGCTGCC 59.249 52.381 11.65 11.65 0.00 4.85
3336 5239 2.164422 GTGGAACCAATCTTAAGGCTGC 59.836 50.000 1.85 0.00 0.00 5.25
3337 5240 3.690460 AGTGGAACCAATCTTAAGGCTG 58.310 45.455 1.85 0.38 37.80 4.85
3338 5241 4.336280 GAAGTGGAACCAATCTTAAGGCT 58.664 43.478 1.85 0.00 37.80 4.58
3339 5242 3.444034 GGAAGTGGAACCAATCTTAAGGC 59.556 47.826 1.85 0.00 37.80 4.35
3340 5243 4.459337 GTGGAAGTGGAACCAATCTTAAGG 59.541 45.833 1.85 0.00 37.80 2.69
3341 5244 4.154195 CGTGGAAGTGGAACCAATCTTAAG 59.846 45.833 0.00 0.00 37.80 1.85
3342 5245 4.069304 CGTGGAAGTGGAACCAATCTTAA 58.931 43.478 0.00 0.00 37.80 1.85
3343 5246 3.071892 ACGTGGAAGTGGAACCAATCTTA 59.928 43.478 0.00 0.00 37.80 2.10
3344 5247 2.158667 ACGTGGAAGTGGAACCAATCTT 60.159 45.455 0.00 0.00 37.80 2.40
3345 5248 1.420138 ACGTGGAAGTGGAACCAATCT 59.580 47.619 0.00 0.00 37.80 2.40
3346 5249 1.535462 CACGTGGAAGTGGAACCAATC 59.465 52.381 7.95 0.00 37.80 2.67
3347 5250 1.604604 CACGTGGAAGTGGAACCAAT 58.395 50.000 7.95 0.00 37.80 3.16
3348 5251 3.088259 CACGTGGAAGTGGAACCAA 57.912 52.632 7.95 0.00 37.80 3.67
3349 5252 4.868026 CACGTGGAAGTGGAACCA 57.132 55.556 7.95 0.00 37.80 3.67
3360 5263 1.265095 GAATAGCATGCATCCACGTGG 59.735 52.381 29.26 29.26 0.00 4.94
3361 5264 1.265095 GGAATAGCATGCATCCACGTG 59.735 52.381 24.20 9.08 32.08 4.49
3362 5265 1.597742 GGAATAGCATGCATCCACGT 58.402 50.000 24.20 5.60 32.08 4.49
3363 5266 0.877071 GGGAATAGCATGCATCCACG 59.123 55.000 27.79 0.00 33.48 4.94
3364 5267 2.157738 GAGGGAATAGCATGCATCCAC 58.842 52.381 27.79 20.20 33.48 4.02
3365 5268 2.060275 AGAGGGAATAGCATGCATCCA 58.940 47.619 27.79 10.61 33.48 3.41
3366 5269 2.875094 AGAGGGAATAGCATGCATCC 57.125 50.000 21.98 22.11 0.00 3.51
3367 5270 3.262915 ACCTAGAGGGAATAGCATGCATC 59.737 47.826 21.98 14.48 40.27 3.91
3368 5271 3.254960 ACCTAGAGGGAATAGCATGCAT 58.745 45.455 21.98 8.63 40.27 3.96
3369 5272 2.694397 ACCTAGAGGGAATAGCATGCA 58.306 47.619 21.98 6.36 40.27 3.96
3370 5273 3.778954 AACCTAGAGGGAATAGCATGC 57.221 47.619 10.51 10.51 40.27 4.06
3371 5274 5.934781 AGAAAACCTAGAGGGAATAGCATG 58.065 41.667 0.00 0.00 40.27 4.06
3372 5275 6.615726 TGTAGAAAACCTAGAGGGAATAGCAT 59.384 38.462 0.00 0.00 40.27 3.79
3373 5276 5.962031 TGTAGAAAACCTAGAGGGAATAGCA 59.038 40.000 0.00 0.00 40.27 3.49
3374 5277 6.481434 TGTAGAAAACCTAGAGGGAATAGC 57.519 41.667 0.00 0.00 40.27 2.97
3375 5278 9.369672 AGTATGTAGAAAACCTAGAGGGAATAG 57.630 37.037 0.00 0.00 40.27 1.73
3450 5353 9.654663 AGTAGTGAATTACATAACTGAACTTCC 57.345 33.333 0.00 0.00 0.00 3.46
3473 5376 3.395639 CTGTGTTAGGTTTCGCCAAGTA 58.604 45.455 0.00 0.00 40.61 2.24
3496 5399 1.210478 ACCACCCTATCATGCTGTGTC 59.790 52.381 0.00 0.00 0.00 3.67
3520 5423 4.446719 GGTACACTTTAGGACAGTTTGACG 59.553 45.833 0.00 0.00 0.00 4.35
3594 5497 2.936202 AGTTCCACTGTGTTTGCAGAT 58.064 42.857 7.08 0.00 39.62 2.90
3613 5516 6.587990 CCTTTATGTGCTTCTATCGATGGTAG 59.412 42.308 8.54 9.67 0.00 3.18
3623 5526 1.745827 GCGGCCCTTTATGTGCTTCTA 60.746 52.381 0.00 0.00 0.00 2.10
3644 5547 3.425858 GCGAGCTCGTATGAAGTTAATCC 59.574 47.826 34.46 11.07 42.22 3.01
3653 5556 0.522705 GTTCACGCGAGCTCGTATGA 60.523 55.000 34.46 31.38 41.21 2.15
3654 5557 0.796870 TGTTCACGCGAGCTCGTATG 60.797 55.000 34.46 29.88 41.21 2.39
3655 5558 0.523546 CTGTTCACGCGAGCTCGTAT 60.524 55.000 34.46 21.45 41.21 3.06
3656 5559 1.154282 CTGTTCACGCGAGCTCGTA 60.154 57.895 34.46 16.75 41.21 3.43
3657 5560 1.848932 TACTGTTCACGCGAGCTCGT 61.849 55.000 34.46 16.34 44.35 4.18
3658 5561 0.728129 TTACTGTTCACGCGAGCTCG 60.728 55.000 31.37 31.37 43.27 5.03
3715 5634 5.760253 TGCCAAAGTTTGACACAAAGAAAAA 59.240 32.000 17.33 0.00 0.00 1.94
3999 5930 7.519008 GCCTCTTTATATGTGAAAATGTCCTCG 60.519 40.741 0.00 0.00 0.00 4.63
4000 5931 7.283127 TGCCTCTTTATATGTGAAAATGTCCTC 59.717 37.037 0.00 0.00 0.00 3.71
4007 5938 6.832520 TTGCTGCCTCTTTATATGTGAAAA 57.167 33.333 0.00 0.00 0.00 2.29
4027 5958 1.331756 CACGGGACAATAGAGCATTGC 59.668 52.381 0.00 0.00 46.85 3.56
4061 5992 9.726438 GCAAATATATCTAGGGTTGTACATTCT 57.274 33.333 0.00 0.00 0.00 2.40
4098 6029 6.358118 ACGGCAACAACTATTACACATATG 57.642 37.500 0.00 0.00 0.00 1.78
4117 6048 5.941948 AGGTGAGCAATATATTTAACGGC 57.058 39.130 0.00 0.00 0.00 5.68
4119 6050 9.651718 GAAGAAAGGTGAGCAATATATTTAACG 57.348 33.333 0.00 0.00 0.00 3.18
4162 6095 4.200838 TCATTCACGAGCCAATTACTCA 57.799 40.909 8.05 0.00 33.58 3.41
4175 6108 8.992073 TCTGATACCATATTGAATTCATTCACG 58.008 33.333 9.40 0.16 45.63 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.