Multiple sequence alignment - TraesCS6B01G238000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G238000 chr6B 100.000 4273 0 0 1 4273 413956080 413951808 0.000000e+00 7891
1 TraesCS6B01G238000 chr6B 88.360 378 34 3 1 368 633042759 633043136 3.030000e-121 446
2 TraesCS6B01G238000 chr6B 88.360 378 31 5 1 368 653876423 653876797 3.920000e-120 442
3 TraesCS6B01G238000 chr6B 87.863 379 35 4 1 368 153970000 153969622 6.560000e-118 435
4 TraesCS6B01G238000 chr6D 93.929 3706 120 38 397 4030 266447662 266443990 0.000000e+00 5500
5 TraesCS6B01G238000 chr6D 82.251 231 17 10 4044 4273 266442364 266442157 1.220000e-40 178
6 TraesCS6B01G238000 chr6A 94.650 2486 94 15 1822 4273 377864905 377862425 0.000000e+00 3818
7 TraesCS6B01G238000 chr6A 89.410 1492 63 45 397 1826 377866325 377864867 0.000000e+00 1792
8 TraesCS6B01G238000 chr6A 89.096 376 32 2 1 367 64561585 64561960 3.890000e-125 459
9 TraesCS6B01G238000 chr6A 88.360 378 31 4 1 368 562521990 562522364 3.920000e-120 442
10 TraesCS6B01G238000 chr4D 82.883 999 110 30 1343 2312 364581163 364582129 0.000000e+00 841
11 TraesCS6B01G238000 chr3B 82.300 1000 116 30 1343 2312 229500563 229501531 0.000000e+00 809
12 TraesCS6B01G238000 chr3B 88.095 378 35 7 1 368 551503669 551503292 1.410000e-119 440
13 TraesCS6B01G238000 chr5B 81.381 999 112 38 1343 2312 579152033 579152986 0.000000e+00 747
14 TraesCS6B01G238000 chr5B 88.594 377 33 3 1 368 511705707 511706082 2.340000e-122 449
15 TraesCS6B01G238000 chr5B 88.824 340 29 2 1 331 57921327 57920988 3.980000e-110 409
16 TraesCS6B01G238000 chr1B 88.889 378 32 3 1 368 385301970 385301593 1.400000e-124 457
17 TraesCS6B01G238000 chr1B 88.154 363 34 2 1 354 625945847 625946209 1.420000e-114 424
18 TraesCS6B01G238000 chr3A 88.800 375 32 3 1 365 718867081 718866707 6.520000e-123 451
19 TraesCS6B01G238000 chr2A 88.127 379 33 4 1 369 72965037 72964661 1.410000e-119 440
20 TraesCS6B01G238000 chr7B 88.705 363 32 2 1 354 619127736 619128098 6.560000e-118 435
21 TraesCS6B01G238000 chr4A 88.372 301 25 3 78 368 700505889 700505589 1.890000e-93 353
22 TraesCS6B01G238000 chr2B 90.419 167 16 0 1 167 281966119 281966285 2.000000e-53 220
23 TraesCS6B01G238000 chr2B 90.419 167 16 0 1 167 281972875 281973041 2.000000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G238000 chr6B 413951808 413956080 4272 True 7891 7891 100.000 1 4273 1 chr6B.!!$R2 4272
1 TraesCS6B01G238000 chr6D 266442157 266447662 5505 True 2839 5500 88.090 397 4273 2 chr6D.!!$R1 3876
2 TraesCS6B01G238000 chr6A 377862425 377866325 3900 True 2805 3818 92.030 397 4273 2 chr6A.!!$R1 3876
3 TraesCS6B01G238000 chr4D 364581163 364582129 966 False 841 841 82.883 1343 2312 1 chr4D.!!$F1 969
4 TraesCS6B01G238000 chr3B 229500563 229501531 968 False 809 809 82.300 1343 2312 1 chr3B.!!$F1 969
5 TraesCS6B01G238000 chr5B 579152033 579152986 953 False 747 747 81.381 1343 2312 1 chr5B.!!$F2 969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.031994 GCCAAAAGCGCTCCTTGAAA 59.968 50.0 25.77 0.0 33.01 2.69 F
153 154 0.034198 TTTGCTGGTGTCGGATCGAA 59.966 50.0 0.00 0.0 37.72 3.71 F
267 268 0.037734 AAACAAGACGGATGGGTCCC 59.962 55.0 0.00 0.0 41.83 4.46 F
278 279 0.178861 ATGGGTCCCACTCCTCTTGT 60.179 55.0 14.57 0.0 35.80 3.16 F
283 284 0.178973 TCCCACTCCTCTTGTCGTCA 60.179 55.0 0.00 0.0 0.00 4.35 F
369 370 0.248949 GGCTTAGGTTACGAGGCGAG 60.249 60.0 0.00 0.0 0.00 5.03 F
373 374 0.254178 TAGGTTACGAGGCGAGGAGT 59.746 55.0 0.00 0.0 0.00 3.85 F
2807 2919 0.320771 ACCTGTTGAGATGGTGCGAC 60.321 55.0 0.00 0.0 32.16 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1157 0.915364 AGAAAGGGACAGATCTGGGC 59.085 55.000 26.08 16.90 34.19 5.36 R
2025 2114 1.005805 TGCAGGGATAGGCAACAACAT 59.994 47.619 0.00 0.00 37.03 2.71 R
2095 2206 1.446907 AGCACGAAATGGAGCTCAAG 58.553 50.000 17.19 2.10 30.05 3.02 R
2098 2209 1.731720 AGAAGCACGAAATGGAGCTC 58.268 50.000 4.71 4.71 36.07 4.09 R
2164 2276 2.137523 CCTTTGAACCATGCTGCAAAC 58.862 47.619 6.36 0.00 0.00 2.93 R
2451 2563 1.355210 CGTTGCTGAAAAGCACCGT 59.645 52.632 9.17 0.00 43.88 4.83 R
2809 2921 3.362706 AGGTGAAGTATCTCAGGCGTAA 58.637 45.455 0.00 0.00 0.00 3.18 R
4208 5957 1.065854 CCTCTACAACTTGCCTCCAGG 60.066 57.143 0.00 0.00 38.53 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.309323 CCACAGAACAACACAAAAGAAGA 57.691 39.130 0.00 0.00 0.00 2.87
23 24 5.894807 CCACAGAACAACACAAAAGAAGAT 58.105 37.500 0.00 0.00 0.00 2.40
24 25 5.745294 CCACAGAACAACACAAAAGAAGATG 59.255 40.000 0.00 0.00 0.00 2.90
25 26 6.324819 CACAGAACAACACAAAAGAAGATGT 58.675 36.000 0.00 0.00 0.00 3.06
26 27 6.470235 CACAGAACAACACAAAAGAAGATGTC 59.530 38.462 0.00 0.00 0.00 3.06
27 28 5.678483 CAGAACAACACAAAAGAAGATGTCG 59.322 40.000 0.00 0.00 0.00 4.35
28 29 5.354234 AGAACAACACAAAAGAAGATGTCGT 59.646 36.000 0.00 0.00 0.00 4.34
29 30 4.908736 ACAACACAAAAGAAGATGTCGTG 58.091 39.130 0.00 0.00 0.00 4.35
30 31 4.201910 ACAACACAAAAGAAGATGTCGTGG 60.202 41.667 0.00 0.00 0.00 4.94
31 32 3.541632 ACACAAAAGAAGATGTCGTGGT 58.458 40.909 0.00 0.00 0.00 4.16
32 33 3.560068 ACACAAAAGAAGATGTCGTGGTC 59.440 43.478 0.00 0.00 0.00 4.02
33 34 3.559655 CACAAAAGAAGATGTCGTGGTCA 59.440 43.478 0.00 0.00 0.00 4.02
34 35 3.560068 ACAAAAGAAGATGTCGTGGTCAC 59.440 43.478 0.00 0.00 0.00 3.67
35 36 2.457366 AAGAAGATGTCGTGGTCACC 57.543 50.000 0.00 0.00 0.00 4.02
36 37 1.338107 AGAAGATGTCGTGGTCACCA 58.662 50.000 0.00 0.00 0.00 4.17
45 46 4.227197 TGGTCACCACACCAAACG 57.773 55.556 0.00 0.00 43.88 3.60
46 47 1.300305 TGGTCACCACACCAAACGT 59.700 52.632 0.00 0.00 43.88 3.99
47 48 0.745128 TGGTCACCACACCAAACGTC 60.745 55.000 0.00 0.00 43.88 4.34
48 49 0.745128 GGTCACCACACCAAACGTCA 60.745 55.000 0.00 0.00 36.32 4.35
49 50 0.655733 GTCACCACACCAAACGTCAG 59.344 55.000 0.00 0.00 0.00 3.51
50 51 1.092921 TCACCACACCAAACGTCAGC 61.093 55.000 0.00 0.00 0.00 4.26
51 52 1.822186 ACCACACCAAACGTCAGCC 60.822 57.895 0.00 0.00 0.00 4.85
52 53 1.821759 CCACACCAAACGTCAGCCA 60.822 57.895 0.00 0.00 0.00 4.75
53 54 1.380403 CCACACCAAACGTCAGCCAA 61.380 55.000 0.00 0.00 0.00 4.52
54 55 0.453793 CACACCAAACGTCAGCCAAA 59.546 50.000 0.00 0.00 0.00 3.28
55 56 1.135257 CACACCAAACGTCAGCCAAAA 60.135 47.619 0.00 0.00 0.00 2.44
56 57 1.134175 ACACCAAACGTCAGCCAAAAG 59.866 47.619 0.00 0.00 0.00 2.27
57 58 0.102300 ACCAAACGTCAGCCAAAAGC 59.898 50.000 0.00 0.00 44.25 3.51
66 67 3.354678 GCCAAAAGCGCTCCTTGA 58.645 55.556 25.77 0.00 33.01 3.02
67 68 1.659794 GCCAAAAGCGCTCCTTGAA 59.340 52.632 25.77 0.00 33.01 2.69
68 69 0.031994 GCCAAAAGCGCTCCTTGAAA 59.968 50.000 25.77 0.00 33.01 2.69
69 70 1.932156 GCCAAAAGCGCTCCTTGAAAG 60.932 52.381 25.77 14.57 33.01 2.62
70 71 1.608590 CCAAAAGCGCTCCTTGAAAGA 59.391 47.619 25.77 0.00 33.01 2.52
71 72 2.605580 CCAAAAGCGCTCCTTGAAAGAC 60.606 50.000 25.77 0.00 33.01 3.01
72 73 1.967319 AAAGCGCTCCTTGAAAGACA 58.033 45.000 12.06 0.00 33.01 3.41
73 74 1.230324 AAGCGCTCCTTGAAAGACAC 58.770 50.000 12.06 0.00 30.99 3.67
74 75 0.106708 AGCGCTCCTTGAAAGACACA 59.893 50.000 2.64 0.00 0.00 3.72
75 76 0.235926 GCGCTCCTTGAAAGACACAC 59.764 55.000 0.00 0.00 0.00 3.82
76 77 0.508641 CGCTCCTTGAAAGACACACG 59.491 55.000 0.00 0.00 0.00 4.49
77 78 1.865865 GCTCCTTGAAAGACACACGA 58.134 50.000 0.00 0.00 0.00 4.35
78 79 2.210116 GCTCCTTGAAAGACACACGAA 58.790 47.619 0.00 0.00 0.00 3.85
79 80 2.032808 GCTCCTTGAAAGACACACGAAC 60.033 50.000 0.00 0.00 0.00 3.95
80 81 3.458189 CTCCTTGAAAGACACACGAACT 58.542 45.455 0.00 0.00 0.00 3.01
81 82 3.194861 TCCTTGAAAGACACACGAACTG 58.805 45.455 0.00 0.00 0.00 3.16
82 83 2.286418 CCTTGAAAGACACACGAACTGC 60.286 50.000 0.00 0.00 0.00 4.40
83 84 1.295792 TGAAAGACACACGAACTGCC 58.704 50.000 0.00 0.00 0.00 4.85
84 85 1.295792 GAAAGACACACGAACTGCCA 58.704 50.000 0.00 0.00 0.00 4.92
85 86 1.668751 GAAAGACACACGAACTGCCAA 59.331 47.619 0.00 0.00 0.00 4.52
86 87 1.299541 AAGACACACGAACTGCCAAG 58.700 50.000 0.00 0.00 0.00 3.61
87 88 0.464036 AGACACACGAACTGCCAAGA 59.536 50.000 0.00 0.00 0.00 3.02
88 89 1.070758 AGACACACGAACTGCCAAGAT 59.929 47.619 0.00 0.00 0.00 2.40
89 90 1.461127 GACACACGAACTGCCAAGATC 59.539 52.381 0.00 0.00 0.00 2.75
90 91 1.070758 ACACACGAACTGCCAAGATCT 59.929 47.619 0.00 0.00 0.00 2.75
91 92 1.462283 CACACGAACTGCCAAGATCTG 59.538 52.381 0.00 0.00 0.00 2.90
92 93 1.344438 ACACGAACTGCCAAGATCTGA 59.656 47.619 0.00 0.00 0.00 3.27
93 94 2.224281 ACACGAACTGCCAAGATCTGAA 60.224 45.455 0.00 0.00 0.00 3.02
94 95 2.414481 CACGAACTGCCAAGATCTGAAG 59.586 50.000 0.00 0.00 0.00 3.02
95 96 2.005451 CGAACTGCCAAGATCTGAAGG 58.995 52.381 0.00 0.00 0.00 3.46
96 97 2.363683 GAACTGCCAAGATCTGAAGGG 58.636 52.381 0.00 0.00 0.00 3.95
97 98 1.661463 ACTGCCAAGATCTGAAGGGA 58.339 50.000 0.00 0.00 0.00 4.20
98 99 1.988107 ACTGCCAAGATCTGAAGGGAA 59.012 47.619 0.00 0.00 0.00 3.97
99 100 2.290577 ACTGCCAAGATCTGAAGGGAAC 60.291 50.000 0.00 0.00 0.00 3.62
122 123 3.814577 CGATCTCGGGACACAAACT 57.185 52.632 0.00 0.00 35.37 2.66
123 124 1.630148 CGATCTCGGGACACAAACTC 58.370 55.000 0.00 0.00 35.37 3.01
124 125 1.202582 CGATCTCGGGACACAAACTCT 59.797 52.381 0.00 0.00 35.37 3.24
125 126 2.732597 CGATCTCGGGACACAAACTCTC 60.733 54.545 0.00 0.00 35.37 3.20
126 127 1.699730 TCTCGGGACACAAACTCTCA 58.300 50.000 0.00 0.00 0.00 3.27
127 128 1.340248 TCTCGGGACACAAACTCTCAC 59.660 52.381 0.00 0.00 0.00 3.51
128 129 1.068588 CTCGGGACACAAACTCTCACA 59.931 52.381 0.00 0.00 0.00 3.58
129 130 1.691976 TCGGGACACAAACTCTCACAT 59.308 47.619 0.00 0.00 0.00 3.21
130 131 1.800586 CGGGACACAAACTCTCACATG 59.199 52.381 0.00 0.00 0.00 3.21
131 132 1.537202 GGGACACAAACTCTCACATGC 59.463 52.381 0.00 0.00 0.00 4.06
132 133 1.537202 GGACACAAACTCTCACATGCC 59.463 52.381 0.00 0.00 0.00 4.40
133 134 1.537202 GACACAAACTCTCACATGCCC 59.463 52.381 0.00 0.00 0.00 5.36
134 135 1.143684 ACACAAACTCTCACATGCCCT 59.856 47.619 0.00 0.00 0.00 5.19
135 136 2.233271 CACAAACTCTCACATGCCCTT 58.767 47.619 0.00 0.00 0.00 3.95
136 137 2.624838 CACAAACTCTCACATGCCCTTT 59.375 45.455 0.00 0.00 0.00 3.11
137 138 2.624838 ACAAACTCTCACATGCCCTTTG 59.375 45.455 0.00 0.00 0.00 2.77
138 139 1.251251 AACTCTCACATGCCCTTTGC 58.749 50.000 0.00 0.00 41.77 3.68
139 140 0.403271 ACTCTCACATGCCCTTTGCT 59.597 50.000 0.00 0.00 42.00 3.91
140 141 0.809385 CTCTCACATGCCCTTTGCTG 59.191 55.000 0.00 0.00 42.00 4.41
141 142 0.609957 TCTCACATGCCCTTTGCTGG 60.610 55.000 0.00 0.00 42.00 4.85
142 143 0.896940 CTCACATGCCCTTTGCTGGT 60.897 55.000 0.00 0.00 42.00 4.00
143 144 1.180456 TCACATGCCCTTTGCTGGTG 61.180 55.000 0.00 0.00 42.37 4.17
144 145 1.152483 ACATGCCCTTTGCTGGTGT 60.152 52.632 0.00 0.00 42.00 4.16
145 146 1.181098 ACATGCCCTTTGCTGGTGTC 61.181 55.000 0.00 0.00 42.00 3.67
146 147 1.973281 ATGCCCTTTGCTGGTGTCG 60.973 57.895 0.00 0.00 42.00 4.35
147 148 3.365265 GCCCTTTGCTGGTGTCGG 61.365 66.667 0.00 0.00 36.87 4.79
148 149 2.429930 CCCTTTGCTGGTGTCGGA 59.570 61.111 0.00 0.00 0.00 4.55
149 150 1.002134 CCCTTTGCTGGTGTCGGAT 60.002 57.895 0.00 0.00 0.00 4.18
150 151 1.026718 CCCTTTGCTGGTGTCGGATC 61.027 60.000 0.00 0.00 0.00 3.36
151 152 1.361668 CCTTTGCTGGTGTCGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
152 153 0.389817 CTTTGCTGGTGTCGGATCGA 60.390 55.000 0.00 0.00 0.00 3.59
153 154 0.034198 TTTGCTGGTGTCGGATCGAA 59.966 50.000 0.00 0.00 37.72 3.71
154 155 0.249120 TTGCTGGTGTCGGATCGAAT 59.751 50.000 0.00 0.00 37.72 3.34
155 156 1.107945 TGCTGGTGTCGGATCGAATA 58.892 50.000 0.00 0.00 37.72 1.75
156 157 1.686587 TGCTGGTGTCGGATCGAATAT 59.313 47.619 0.00 0.00 37.72 1.28
157 158 2.288213 TGCTGGTGTCGGATCGAATATC 60.288 50.000 0.00 0.00 37.72 1.63
158 159 2.585845 CTGGTGTCGGATCGAATATCG 58.414 52.381 0.00 0.00 42.10 2.92
159 160 1.951602 TGGTGTCGGATCGAATATCGT 59.048 47.619 0.00 0.00 41.35 3.73
160 161 2.031420 TGGTGTCGGATCGAATATCGTC 60.031 50.000 0.00 0.00 41.35 4.20
161 162 2.231693 GTGTCGGATCGAATATCGTCG 58.768 52.381 0.00 3.74 41.35 5.12
169 170 2.837498 TCGAATATCGTCGAGGTACCA 58.163 47.619 15.94 0.00 44.76 3.25
170 171 2.804527 TCGAATATCGTCGAGGTACCAG 59.195 50.000 15.94 7.92 44.76 4.00
171 172 2.804527 CGAATATCGTCGAGGTACCAGA 59.195 50.000 15.94 10.41 43.86 3.86
172 173 3.120615 CGAATATCGTCGAGGTACCAGAG 60.121 52.174 15.94 4.76 43.86 3.35
173 174 3.766068 ATATCGTCGAGGTACCAGAGA 57.234 47.619 15.94 7.28 0.00 3.10
174 175 1.956297 ATCGTCGAGGTACCAGAGAG 58.044 55.000 15.94 9.96 0.00 3.20
175 176 0.900421 TCGTCGAGGTACCAGAGAGA 59.100 55.000 15.94 11.95 0.00 3.10
176 177 1.008329 CGTCGAGGTACCAGAGAGAC 58.992 60.000 15.94 13.62 0.00 3.36
177 178 1.405797 CGTCGAGGTACCAGAGAGACT 60.406 57.143 15.94 0.00 0.00 3.24
178 179 2.713877 GTCGAGGTACCAGAGAGACTT 58.286 52.381 15.94 0.00 0.00 3.01
179 180 3.083293 GTCGAGGTACCAGAGAGACTTT 58.917 50.000 15.94 0.00 0.00 2.66
180 181 4.260170 GTCGAGGTACCAGAGAGACTTTA 58.740 47.826 15.94 0.00 0.00 1.85
181 182 4.883006 GTCGAGGTACCAGAGAGACTTTAT 59.117 45.833 15.94 0.00 0.00 1.40
182 183 5.357596 GTCGAGGTACCAGAGAGACTTTATT 59.642 44.000 15.94 0.00 0.00 1.40
183 184 5.589452 TCGAGGTACCAGAGAGACTTTATTC 59.411 44.000 15.94 0.00 0.00 1.75
184 185 5.221087 CGAGGTACCAGAGAGACTTTATTCC 60.221 48.000 15.94 0.00 0.00 3.01
185 186 5.590818 AGGTACCAGAGAGACTTTATTCCA 58.409 41.667 15.94 0.00 0.00 3.53
186 187 6.023603 AGGTACCAGAGAGACTTTATTCCAA 58.976 40.000 15.94 0.00 0.00 3.53
187 188 6.070710 AGGTACCAGAGAGACTTTATTCCAAC 60.071 42.308 15.94 0.00 0.00 3.77
188 189 5.825593 ACCAGAGAGACTTTATTCCAACA 57.174 39.130 0.00 0.00 0.00 3.33
189 190 5.552178 ACCAGAGAGACTTTATTCCAACAC 58.448 41.667 0.00 0.00 0.00 3.32
190 191 4.627467 CCAGAGAGACTTTATTCCAACACG 59.373 45.833 0.00 0.00 0.00 4.49
191 192 4.092091 CAGAGAGACTTTATTCCAACACGC 59.908 45.833 0.00 0.00 0.00 5.34
192 193 3.335579 AGAGACTTTATTCCAACACGCC 58.664 45.455 0.00 0.00 0.00 5.68
193 194 3.071479 GAGACTTTATTCCAACACGCCA 58.929 45.455 0.00 0.00 0.00 5.69
194 195 3.686016 AGACTTTATTCCAACACGCCAT 58.314 40.909 0.00 0.00 0.00 4.40
195 196 4.079253 AGACTTTATTCCAACACGCCATT 58.921 39.130 0.00 0.00 0.00 3.16
196 197 4.082787 AGACTTTATTCCAACACGCCATTG 60.083 41.667 0.00 0.00 0.00 2.82
197 198 3.572255 ACTTTATTCCAACACGCCATTGT 59.428 39.130 0.00 0.00 0.00 2.71
198 199 3.840890 TTATTCCAACACGCCATTGTC 57.159 42.857 0.00 0.00 0.00 3.18
199 200 0.521291 ATTCCAACACGCCATTGTCG 59.479 50.000 0.00 0.00 0.00 4.35
200 201 2.123988 TTCCAACACGCCATTGTCGC 62.124 55.000 0.00 0.00 0.00 5.19
201 202 2.126888 CAACACGCCATTGTCGCC 60.127 61.111 0.00 0.00 0.00 5.54
202 203 2.593148 AACACGCCATTGTCGCCA 60.593 55.556 0.00 0.00 0.00 5.69
203 204 2.903547 AACACGCCATTGTCGCCAC 61.904 57.895 0.00 0.00 0.00 5.01
204 205 4.101790 CACGCCATTGTCGCCACC 62.102 66.667 0.00 0.00 0.00 4.61
205 206 4.634703 ACGCCATTGTCGCCACCA 62.635 61.111 0.00 0.00 0.00 4.17
206 207 4.101790 CGCCATTGTCGCCACCAC 62.102 66.667 0.00 0.00 0.00 4.16
207 208 3.747976 GCCATTGTCGCCACCACC 61.748 66.667 0.00 0.00 0.00 4.61
208 209 2.034066 CCATTGTCGCCACCACCT 59.966 61.111 0.00 0.00 0.00 4.00
209 210 2.040544 CCATTGTCGCCACCACCTC 61.041 63.158 0.00 0.00 0.00 3.85
210 211 2.047274 ATTGTCGCCACCACCTCG 60.047 61.111 0.00 0.00 0.00 4.63
211 212 2.879233 ATTGTCGCCACCACCTCGT 61.879 57.895 0.00 0.00 0.00 4.18
212 213 2.781595 ATTGTCGCCACCACCTCGTC 62.782 60.000 0.00 0.00 0.00 4.20
215 216 4.129737 CGCCACCACCTCGTCGAT 62.130 66.667 0.00 0.00 0.00 3.59
216 217 2.509336 GCCACCACCTCGTCGATG 60.509 66.667 0.00 0.00 0.00 3.84
217 218 3.001902 GCCACCACCTCGTCGATGA 62.002 63.158 7.21 7.21 0.00 2.92
218 219 1.153823 CCACCACCTCGTCGATGAC 60.154 63.158 2.39 0.00 0.00 3.06
228 229 3.418675 GTCGATGACGCCAGAGAAA 57.581 52.632 0.00 0.00 39.58 2.52
229 230 0.992802 GTCGATGACGCCAGAGAAAC 59.007 55.000 0.00 0.00 39.58 2.78
230 231 0.601057 TCGATGACGCCAGAGAAACA 59.399 50.000 0.00 0.00 39.58 2.83
231 232 1.000394 TCGATGACGCCAGAGAAACAA 60.000 47.619 0.00 0.00 39.58 2.83
232 233 1.798223 CGATGACGCCAGAGAAACAAA 59.202 47.619 0.00 0.00 0.00 2.83
233 234 2.223144 CGATGACGCCAGAGAAACAAAA 59.777 45.455 0.00 0.00 0.00 2.44
234 235 3.303725 CGATGACGCCAGAGAAACAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
235 236 3.414549 TGACGCCAGAGAAACAAAAAC 57.585 42.857 0.00 0.00 0.00 2.43
236 237 2.098443 TGACGCCAGAGAAACAAAAACC 59.902 45.455 0.00 0.00 0.00 3.27
237 238 2.357952 GACGCCAGAGAAACAAAAACCT 59.642 45.455 0.00 0.00 0.00 3.50
238 239 2.099098 ACGCCAGAGAAACAAAAACCTG 59.901 45.455 0.00 0.00 0.00 4.00
239 240 2.357637 CGCCAGAGAAACAAAAACCTGA 59.642 45.455 0.00 0.00 0.00 3.86
240 241 3.548818 CGCCAGAGAAACAAAAACCTGAG 60.549 47.826 0.00 0.00 0.00 3.35
241 242 3.632145 GCCAGAGAAACAAAAACCTGAGA 59.368 43.478 0.00 0.00 0.00 3.27
242 243 4.097892 GCCAGAGAAACAAAAACCTGAGAA 59.902 41.667 0.00 0.00 0.00 2.87
243 244 5.394115 GCCAGAGAAACAAAAACCTGAGAAA 60.394 40.000 0.00 0.00 0.00 2.52
244 245 6.630071 CCAGAGAAACAAAAACCTGAGAAAA 58.370 36.000 0.00 0.00 0.00 2.29
245 246 7.096551 CCAGAGAAACAAAAACCTGAGAAAAA 58.903 34.615 0.00 0.00 0.00 1.94
246 247 7.765819 CCAGAGAAACAAAAACCTGAGAAAAAT 59.234 33.333 0.00 0.00 0.00 1.82
247 248 9.801873 CAGAGAAACAAAAACCTGAGAAAAATA 57.198 29.630 0.00 0.00 0.00 1.40
257 258 8.628882 AAACCTGAGAAAAATAAAACAAGACG 57.371 30.769 0.00 0.00 0.00 4.18
258 259 6.735130 ACCTGAGAAAAATAAAACAAGACGG 58.265 36.000 0.00 0.00 0.00 4.79
259 260 6.544564 ACCTGAGAAAAATAAAACAAGACGGA 59.455 34.615 0.00 0.00 0.00 4.69
260 261 7.230712 ACCTGAGAAAAATAAAACAAGACGGAT 59.769 33.333 0.00 0.00 0.00 4.18
261 262 7.538678 CCTGAGAAAAATAAAACAAGACGGATG 59.461 37.037 0.00 0.00 0.00 3.51
262 263 7.367285 TGAGAAAAATAAAACAAGACGGATGG 58.633 34.615 0.00 0.00 0.00 3.51
263 264 6.687604 AGAAAAATAAAACAAGACGGATGGG 58.312 36.000 0.00 0.00 0.00 4.00
264 265 6.266786 AGAAAAATAAAACAAGACGGATGGGT 59.733 34.615 0.00 0.00 0.00 4.51
265 266 5.638596 AAATAAAACAAGACGGATGGGTC 57.361 39.130 0.00 0.00 37.19 4.46
266 267 1.905637 AAAACAAGACGGATGGGTCC 58.094 50.000 0.00 0.00 41.40 4.46
267 268 0.037734 AAACAAGACGGATGGGTCCC 59.962 55.000 0.00 0.00 41.83 4.46
268 269 1.131303 AACAAGACGGATGGGTCCCA 61.131 55.000 14.64 14.64 41.83 4.37
269 270 1.078426 CAAGACGGATGGGTCCCAC 60.078 63.158 14.57 7.36 41.83 4.61
270 271 1.229529 AAGACGGATGGGTCCCACT 60.230 57.895 14.57 1.81 41.83 4.00
271 272 1.265454 AAGACGGATGGGTCCCACTC 61.265 60.000 14.57 11.89 41.83 3.51
272 273 2.687566 ACGGATGGGTCCCACTCC 60.688 66.667 14.57 19.01 41.83 3.85
273 274 2.365635 CGGATGGGTCCCACTCCT 60.366 66.667 25.17 9.12 41.83 3.69
274 275 2.435693 CGGATGGGTCCCACTCCTC 61.436 68.421 25.17 15.83 41.83 3.71
275 276 1.003573 GGATGGGTCCCACTCCTCT 59.996 63.158 22.75 5.77 38.69 3.69
276 277 0.621862 GGATGGGTCCCACTCCTCTT 60.622 60.000 22.75 5.12 38.69 2.85
277 278 0.543749 GATGGGTCCCACTCCTCTTG 59.456 60.000 14.57 0.00 35.80 3.02
278 279 0.178861 ATGGGTCCCACTCCTCTTGT 60.179 55.000 14.57 0.00 35.80 3.16
279 280 0.836400 TGGGTCCCACTCCTCTTGTC 60.836 60.000 6.47 0.00 0.00 3.18
280 281 1.592223 GGTCCCACTCCTCTTGTCG 59.408 63.158 0.00 0.00 0.00 4.35
281 282 1.186267 GGTCCCACTCCTCTTGTCGT 61.186 60.000 0.00 0.00 0.00 4.34
282 283 0.244178 GTCCCACTCCTCTTGTCGTC 59.756 60.000 0.00 0.00 0.00 4.20
283 284 0.178973 TCCCACTCCTCTTGTCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
284 285 0.679505 CCCACTCCTCTTGTCGTCAA 59.320 55.000 0.00 0.00 0.00 3.18
285 286 1.605712 CCCACTCCTCTTGTCGTCAAC 60.606 57.143 0.00 0.00 0.00 3.18
286 287 1.409412 CACTCCTCTTGTCGTCAACG 58.591 55.000 0.00 0.00 41.45 4.10
308 309 4.814294 CGCCGGACGGGAAAGAGG 62.814 72.222 5.05 0.00 38.47 3.69
309 310 3.387947 GCCGGACGGGAAAGAGGA 61.388 66.667 5.05 0.00 38.47 3.71
310 311 2.893398 CCGGACGGGAAAGAGGAG 59.107 66.667 0.00 0.00 38.47 3.69
311 312 2.722201 CCGGACGGGAAAGAGGAGG 61.722 68.421 0.00 0.00 38.47 4.30
312 313 2.722201 CGGACGGGAAAGAGGAGGG 61.722 68.421 0.00 0.00 0.00 4.30
313 314 2.368011 GGACGGGAAAGAGGAGGGG 61.368 68.421 0.00 0.00 0.00 4.79
314 315 2.285442 ACGGGAAAGAGGAGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
315 316 2.040606 CGGGAAAGAGGAGGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
316 317 2.368011 CGGGAAAGAGGAGGGGGAC 61.368 68.421 0.00 0.00 0.00 4.46
333 334 4.087892 CCGAGGTGGTGGCAGGAG 62.088 72.222 0.00 0.00 0.00 3.69
334 335 3.314331 CGAGGTGGTGGCAGGAGT 61.314 66.667 0.00 0.00 0.00 3.85
335 336 2.883828 CGAGGTGGTGGCAGGAGTT 61.884 63.158 0.00 0.00 0.00 3.01
336 337 1.302832 GAGGTGGTGGCAGGAGTTG 60.303 63.158 0.00 0.00 0.00 3.16
337 338 2.056906 GAGGTGGTGGCAGGAGTTGT 62.057 60.000 0.00 0.00 0.00 3.32
338 339 1.898574 GGTGGTGGCAGGAGTTGTG 60.899 63.158 0.00 0.00 0.00 3.33
339 340 1.898574 GTGGTGGCAGGAGTTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
340 341 2.382770 TGGTGGCAGGAGTTGTGGT 61.383 57.895 0.00 0.00 0.00 4.16
341 342 1.898574 GGTGGCAGGAGTTGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
342 343 1.898574 GTGGCAGGAGTTGTGGTGG 60.899 63.158 0.00 0.00 0.00 4.61
343 344 2.985847 GGCAGGAGTTGTGGTGGC 60.986 66.667 0.00 0.00 0.00 5.01
344 345 3.357079 GCAGGAGTTGTGGTGGCG 61.357 66.667 0.00 0.00 0.00 5.69
345 346 2.669569 CAGGAGTTGTGGTGGCGG 60.670 66.667 0.00 0.00 0.00 6.13
346 347 3.168528 AGGAGTTGTGGTGGCGGT 61.169 61.111 0.00 0.00 0.00 5.68
347 348 2.978010 GGAGTTGTGGTGGCGGTG 60.978 66.667 0.00 0.00 0.00 4.94
348 349 2.978010 GAGTTGTGGTGGCGGTGG 60.978 66.667 0.00 0.00 0.00 4.61
360 361 2.580276 CGGTGGCGGCTTAGGTTA 59.420 61.111 11.43 0.00 0.00 2.85
361 362 1.812507 CGGTGGCGGCTTAGGTTAC 60.813 63.158 11.43 0.00 0.00 2.50
362 363 1.812507 GGTGGCGGCTTAGGTTACG 60.813 63.158 11.43 0.00 0.00 3.18
363 364 1.216178 GTGGCGGCTTAGGTTACGA 59.784 57.895 11.43 0.00 0.00 3.43
364 365 0.804933 GTGGCGGCTTAGGTTACGAG 60.805 60.000 11.43 0.00 0.00 4.18
365 366 1.227176 GGCGGCTTAGGTTACGAGG 60.227 63.158 0.00 0.00 0.00 4.63
366 367 1.881709 GCGGCTTAGGTTACGAGGC 60.882 63.158 0.00 0.00 0.00 4.70
367 368 4.414732 GGCTTAGGTTACGAGGCG 57.585 61.111 0.00 0.00 0.00 5.52
368 369 1.811860 GGCTTAGGTTACGAGGCGA 59.188 57.895 0.00 0.00 0.00 5.54
369 370 0.248949 GGCTTAGGTTACGAGGCGAG 60.249 60.000 0.00 0.00 0.00 5.03
370 371 0.248949 GCTTAGGTTACGAGGCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
371 372 1.386533 CTTAGGTTACGAGGCGAGGA 58.613 55.000 0.00 0.00 0.00 3.71
372 373 1.334243 CTTAGGTTACGAGGCGAGGAG 59.666 57.143 0.00 0.00 0.00 3.69
373 374 0.254178 TAGGTTACGAGGCGAGGAGT 59.746 55.000 0.00 0.00 0.00 3.85
374 375 1.031029 AGGTTACGAGGCGAGGAGTC 61.031 60.000 0.00 0.00 0.00 3.36
384 385 2.483441 CGAGGAGTCGTGGAGATGT 58.517 57.895 0.00 0.00 41.57 3.06
385 386 1.664873 CGAGGAGTCGTGGAGATGTA 58.335 55.000 0.00 0.00 41.57 2.29
386 387 2.014857 CGAGGAGTCGTGGAGATGTAA 58.985 52.381 0.00 0.00 41.57 2.41
387 388 2.619177 CGAGGAGTCGTGGAGATGTAAT 59.381 50.000 0.00 0.00 41.57 1.89
388 389 3.813724 CGAGGAGTCGTGGAGATGTAATA 59.186 47.826 0.00 0.00 41.57 0.98
389 390 4.319622 CGAGGAGTCGTGGAGATGTAATAC 60.320 50.000 0.00 0.00 41.57 1.89
390 391 4.794334 AGGAGTCGTGGAGATGTAATACT 58.206 43.478 0.00 0.00 0.00 2.12
391 392 5.938279 AGGAGTCGTGGAGATGTAATACTA 58.062 41.667 0.00 0.00 0.00 1.82
392 393 6.544650 AGGAGTCGTGGAGATGTAATACTAT 58.455 40.000 0.00 0.00 0.00 2.12
393 394 7.005296 AGGAGTCGTGGAGATGTAATACTATT 58.995 38.462 0.00 0.00 0.00 1.73
394 395 8.162085 AGGAGTCGTGGAGATGTAATACTATTA 58.838 37.037 0.00 0.00 0.00 0.98
395 396 8.235905 GGAGTCGTGGAGATGTAATACTATTAC 58.764 40.741 10.84 10.84 0.00 1.89
478 484 4.014847 ACACGACACTGACACAAATTTG 57.985 40.909 16.67 16.67 0.00 2.32
663 681 1.478654 CGGTTCCCATAATCCCCTTGG 60.479 57.143 0.00 0.00 0.00 3.61
664 682 1.704641 GTTCCCATAATCCCCTTGGC 58.295 55.000 0.00 0.00 0.00 4.52
665 683 1.217942 GTTCCCATAATCCCCTTGGCT 59.782 52.381 0.00 0.00 0.00 4.75
668 686 1.500736 CCCATAATCCCCTTGGCTCTT 59.499 52.381 0.00 0.00 0.00 2.85
669 687 2.590821 CCATAATCCCCTTGGCTCTTG 58.409 52.381 0.00 0.00 0.00 3.02
701 724 1.480954 TCTCGCTATTCCTTTCCGCTT 59.519 47.619 0.00 0.00 0.00 4.68
718 741 2.175184 CTTCCTCACCACGCGCAAAG 62.175 60.000 5.73 0.00 0.00 2.77
719 742 2.652382 TTCCTCACCACGCGCAAAGA 62.652 55.000 5.73 0.00 0.00 2.52
738 761 4.138487 AGATCCACAACCCTCGTATTTC 57.862 45.455 0.00 0.00 0.00 2.17
785 813 1.208614 GTACGAACTCCGACAGCGT 59.791 57.895 0.00 0.00 41.76 5.07
831 859 3.525800 ACAAACAATTAGCCCAGACCT 57.474 42.857 0.00 0.00 0.00 3.85
832 860 3.844640 ACAAACAATTAGCCCAGACCTT 58.155 40.909 0.00 0.00 0.00 3.50
861 889 4.992294 CGCAAAAACACCGCCCGG 62.992 66.667 4.96 4.96 42.03 5.73
1208 1259 4.020218 GCCCCTGCTTTTCCTTCTTTTTAT 60.020 41.667 0.00 0.00 33.53 1.40
1209 1260 5.186992 GCCCCTGCTTTTCCTTCTTTTTATA 59.813 40.000 0.00 0.00 33.53 0.98
1210 1261 6.127054 GCCCCTGCTTTTCCTTCTTTTTATAT 60.127 38.462 0.00 0.00 33.53 0.86
1248 1309 1.073722 CTGGCCTGGAAACTGCTCA 59.926 57.895 3.32 0.00 0.00 4.26
1315 1380 2.038387 ACCACCAATATCACGCTTCC 57.962 50.000 0.00 0.00 0.00 3.46
1365 1430 6.990939 AGGTTTCTGTTTTAGAGTAAGTGTCC 59.009 38.462 0.00 0.00 36.61 4.02
1659 1733 5.279556 GCCAAAGTAGACTACAGAGGAGTTT 60.280 44.000 14.95 2.23 0.00 2.66
1720 1808 5.528043 TCTGAATTAGGCTGTCTCTGATC 57.472 43.478 0.00 0.00 0.00 2.92
1725 1813 5.789643 ATTAGGCTGTCTCTGATCTTCTC 57.210 43.478 0.00 0.00 0.00 2.87
1729 1817 3.951037 GGCTGTCTCTGATCTTCTCTGTA 59.049 47.826 0.00 0.00 0.00 2.74
1730 1818 4.584325 GGCTGTCTCTGATCTTCTCTGTAT 59.416 45.833 0.00 0.00 0.00 2.29
1731 1819 5.767665 GGCTGTCTCTGATCTTCTCTGTATA 59.232 44.000 0.00 0.00 0.00 1.47
1793 1881 2.662866 CTGCCATGGTTGATCTTCCAT 58.337 47.619 14.67 13.72 44.15 3.41
1986 2075 9.420551 ACAATACACTGTAAGCTTTACTAACTC 57.579 33.333 3.20 0.00 37.60 3.01
2025 2114 7.016858 ACTGGTGTCCTAAGTTAGGTAAATCAA 59.983 37.037 25.10 4.67 46.32 2.57
2035 2125 6.687604 AGTTAGGTAAATCAATGTTGTTGCC 58.312 36.000 0.00 0.00 0.00 4.52
2073 2165 9.482627 TTTGTACAGTCTTTTGTTGTTCAAATT 57.517 25.926 0.00 0.00 44.15 1.82
2104 2215 8.558973 ACTTGCATATTATTATCTTGAGCTCC 57.441 34.615 12.15 0.00 0.00 4.70
2134 2245 1.909700 TCTTGTGACTTCCATTGCCC 58.090 50.000 0.00 0.00 0.00 5.36
2164 2276 7.807433 TGATTTCTCACATGGTTTTTGTATTCG 59.193 33.333 0.00 0.00 0.00 3.34
2262 2374 2.957402 TCTGTTCCTGCTGATTGGTT 57.043 45.000 0.00 0.00 0.00 3.67
2451 2563 1.885388 CCACGGCGTGTCTTTGACA 60.885 57.895 34.74 0.00 40.50 3.58
2807 2919 0.320771 ACCTGTTGAGATGGTGCGAC 60.321 55.000 0.00 0.00 32.16 5.19
2808 2920 0.036952 CCTGTTGAGATGGTGCGACT 60.037 55.000 0.00 0.00 0.00 4.18
2809 2921 1.609061 CCTGTTGAGATGGTGCGACTT 60.609 52.381 0.00 0.00 0.00 3.01
3050 3162 1.146930 CCATGTGGACCGGATCAGG 59.853 63.158 9.46 10.69 37.39 3.86
3071 3183 2.737252 GTTCAGCTACTTCTTGAACCCG 59.263 50.000 5.51 0.00 34.51 5.28
3146 3258 2.496470 GGAGGAGTACACGTTCCAAGAT 59.504 50.000 6.77 0.00 35.88 2.40
3220 3332 0.319469 GCCTATCTGCTCGAGAAGGC 60.319 60.000 20.65 20.29 42.59 4.35
3233 3345 2.685388 CGAGAAGGCTGATCAGTACAGA 59.315 50.000 23.38 0.00 37.54 3.41
3277 3389 1.483004 GAGAGAAAGTGGGTAGCCTCC 59.517 57.143 13.11 2.75 0.00 4.30
3586 3712 2.615447 CAGACTGTGTGACATTTGCAGT 59.385 45.455 6.31 6.31 42.29 4.40
3587 3713 3.065786 CAGACTGTGTGACATTTGCAGTT 59.934 43.478 7.81 0.00 40.06 3.16
3588 3714 3.696051 AGACTGTGTGACATTTGCAGTTT 59.304 39.130 7.81 0.61 40.06 2.66
3591 3717 4.864247 ACTGTGTGACATTTGCAGTTTTTC 59.136 37.500 1.26 0.00 37.12 2.29
3592 3718 4.814147 TGTGTGACATTTGCAGTTTTTCA 58.186 34.783 0.00 0.00 0.00 2.69
3596 3724 7.094890 TGTGTGACATTTGCAGTTTTTCATTTT 60.095 29.630 0.00 0.00 0.00 1.82
3667 3795 8.161699 TCGCTGATGATTTACTACAGTACATA 57.838 34.615 0.00 0.00 0.00 2.29
3679 3807 5.652452 ACTACAGTACATATGCACTCAGTGA 59.348 40.000 9.70 0.00 35.23 3.41
3680 3808 4.748892 ACAGTACATATGCACTCAGTGAC 58.251 43.478 9.70 0.07 35.23 3.67
3681 3809 4.220602 ACAGTACATATGCACTCAGTGACA 59.779 41.667 9.70 6.69 35.23 3.58
3682 3810 4.802563 CAGTACATATGCACTCAGTGACAG 59.197 45.833 9.70 0.00 35.23 3.51
3683 3811 3.969287 ACATATGCACTCAGTGACAGT 57.031 42.857 9.70 0.00 35.23 3.55
3687 3815 2.749280 TGCACTCAGTGACAGTATGG 57.251 50.000 9.70 0.00 35.31 2.74
3724 3852 2.194388 CTGCTGTCAGTGGCCATCCT 62.194 60.000 9.72 0.00 35.61 3.24
3750 3881 4.553330 TCTGGTCAAGTGTCTTAATCCC 57.447 45.455 0.00 0.00 0.00 3.85
3791 3922 3.120792 GCTGTCGTACTGAAAACACTGA 58.879 45.455 0.00 0.00 0.00 3.41
3966 4102 2.034221 GTGGGAACAGGCTGTCCC 59.966 66.667 31.68 31.68 44.46 4.46
4102 5850 2.678336 CCTCGGCTAGTTGATTTGTTCC 59.322 50.000 0.00 0.00 0.00 3.62
4104 5852 3.745799 TCGGCTAGTTGATTTGTTCCAA 58.254 40.909 0.00 0.00 0.00 3.53
4105 5853 4.331968 TCGGCTAGTTGATTTGTTCCAAT 58.668 39.130 0.00 0.00 0.00 3.16
4106 5854 4.155826 TCGGCTAGTTGATTTGTTCCAATG 59.844 41.667 0.00 0.00 0.00 2.82
4107 5855 4.155826 CGGCTAGTTGATTTGTTCCAATGA 59.844 41.667 0.00 0.00 0.00 2.57
4127 5875 3.003275 TGATTTCAGAGAAACGTTGCCAC 59.997 43.478 0.00 0.00 0.00 5.01
4132 5880 2.731976 CAGAGAAACGTTGCCACTAGTC 59.268 50.000 0.00 0.00 0.00 2.59
4155 5903 4.243270 GTGGTATAACTTGCAGTCTTCGT 58.757 43.478 0.00 0.00 0.00 3.85
4193 5942 6.044682 CAGATTTTATGTGGGATTTTGCCTC 58.955 40.000 0.00 0.00 0.00 4.70
4255 6004 1.816835 CTTGAGGCGAGTGGTACAGTA 59.183 52.381 0.00 0.00 45.14 2.74
4260 6009 3.600493 CGAGTGGTACAGTAGCGTC 57.400 57.895 5.32 4.01 45.14 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.309323 TCTTCTTTTGTGTTGTTCTGTGG 57.691 39.130 0.00 0.00 0.00 4.17
1 2 6.324819 ACATCTTCTTTTGTGTTGTTCTGTG 58.675 36.000 0.00 0.00 0.00 3.66
2 3 6.515272 ACATCTTCTTTTGTGTTGTTCTGT 57.485 33.333 0.00 0.00 0.00 3.41
3 4 5.678483 CGACATCTTCTTTTGTGTTGTTCTG 59.322 40.000 0.00 0.00 0.00 3.02
4 5 5.354234 ACGACATCTTCTTTTGTGTTGTTCT 59.646 36.000 0.00 0.00 36.12 3.01
5 6 5.452302 CACGACATCTTCTTTTGTGTTGTTC 59.548 40.000 0.00 0.00 37.15 3.18
6 7 5.331902 CACGACATCTTCTTTTGTGTTGTT 58.668 37.500 0.00 0.00 37.15 2.83
7 8 4.201910 CCACGACATCTTCTTTTGTGTTGT 60.202 41.667 0.00 0.00 39.20 3.32
8 9 4.201910 ACCACGACATCTTCTTTTGTGTTG 60.202 41.667 0.00 0.00 33.26 3.33
9 10 3.945285 ACCACGACATCTTCTTTTGTGTT 59.055 39.130 0.00 0.00 0.00 3.32
10 11 3.541632 ACCACGACATCTTCTTTTGTGT 58.458 40.909 0.00 0.00 0.00 3.72
11 12 3.559655 TGACCACGACATCTTCTTTTGTG 59.440 43.478 0.00 0.00 0.00 3.33
12 13 3.560068 GTGACCACGACATCTTCTTTTGT 59.440 43.478 0.00 0.00 0.00 2.83
13 14 3.058914 GGTGACCACGACATCTTCTTTTG 60.059 47.826 0.00 0.00 0.00 2.44
14 15 3.139077 GGTGACCACGACATCTTCTTTT 58.861 45.455 0.00 0.00 0.00 2.27
15 16 2.104111 TGGTGACCACGACATCTTCTTT 59.896 45.455 0.00 0.00 0.00 2.52
16 17 1.691976 TGGTGACCACGACATCTTCTT 59.308 47.619 0.00 0.00 0.00 2.52
17 18 1.000955 GTGGTGACCACGACATCTTCT 59.999 52.381 20.19 0.00 44.95 2.85
18 19 1.429463 GTGGTGACCACGACATCTTC 58.571 55.000 20.19 0.00 44.95 2.87
19 20 3.606886 GTGGTGACCACGACATCTT 57.393 52.632 20.19 0.00 44.95 2.40
28 29 0.745128 GACGTTTGGTGTGGTGACCA 60.745 55.000 0.00 0.00 44.64 4.02
29 30 0.745128 TGACGTTTGGTGTGGTGACC 60.745 55.000 0.00 0.00 36.43 4.02
30 31 0.655733 CTGACGTTTGGTGTGGTGAC 59.344 55.000 0.00 0.00 0.00 3.67
31 32 1.092921 GCTGACGTTTGGTGTGGTGA 61.093 55.000 0.00 0.00 0.00 4.02
32 33 1.355210 GCTGACGTTTGGTGTGGTG 59.645 57.895 0.00 0.00 0.00 4.17
33 34 1.822186 GGCTGACGTTTGGTGTGGT 60.822 57.895 0.00 0.00 0.00 4.16
34 35 1.380403 TTGGCTGACGTTTGGTGTGG 61.380 55.000 0.00 0.00 0.00 4.17
35 36 0.453793 TTTGGCTGACGTTTGGTGTG 59.546 50.000 0.00 0.00 0.00 3.82
36 37 1.134175 CTTTTGGCTGACGTTTGGTGT 59.866 47.619 0.00 0.00 0.00 4.16
37 38 1.838913 CTTTTGGCTGACGTTTGGTG 58.161 50.000 0.00 0.00 0.00 4.17
38 39 0.102300 GCTTTTGGCTGACGTTTGGT 59.898 50.000 0.00 0.00 38.06 3.67
39 40 0.934436 CGCTTTTGGCTGACGTTTGG 60.934 55.000 0.00 0.00 39.13 3.28
40 41 1.539776 GCGCTTTTGGCTGACGTTTG 61.540 55.000 0.00 0.00 39.13 2.93
41 42 1.299089 GCGCTTTTGGCTGACGTTT 60.299 52.632 0.00 0.00 39.13 3.60
42 43 2.117941 GAGCGCTTTTGGCTGACGTT 62.118 55.000 13.26 0.00 41.72 3.99
43 44 2.591715 AGCGCTTTTGGCTGACGT 60.592 55.556 2.64 0.00 39.77 4.34
44 45 2.174349 GAGCGCTTTTGGCTGACG 59.826 61.111 13.26 0.00 41.72 4.35
45 46 1.518903 AAGGAGCGCTTTTGGCTGAC 61.519 55.000 13.26 0.00 41.72 3.51
46 47 1.228245 AAGGAGCGCTTTTGGCTGA 60.228 52.632 13.26 0.00 41.72 4.26
47 48 1.080974 CAAGGAGCGCTTTTGGCTG 60.081 57.895 13.26 0.00 41.72 4.85
48 49 0.823356 TTCAAGGAGCGCTTTTGGCT 60.823 50.000 25.68 0.00 45.00 4.75
49 50 0.031994 TTTCAAGGAGCGCTTTTGGC 59.968 50.000 25.68 9.61 37.64 4.52
50 51 1.608590 TCTTTCAAGGAGCGCTTTTGG 59.391 47.619 25.68 15.31 0.00 3.28
51 52 2.033299 TGTCTTTCAAGGAGCGCTTTTG 59.967 45.455 22.41 22.41 0.00 2.44
52 53 2.033424 GTGTCTTTCAAGGAGCGCTTTT 59.967 45.455 13.26 6.85 0.00 2.27
53 54 1.604278 GTGTCTTTCAAGGAGCGCTTT 59.396 47.619 13.26 0.00 0.00 3.51
54 55 1.230324 GTGTCTTTCAAGGAGCGCTT 58.770 50.000 13.26 0.00 0.00 4.68
55 56 0.106708 TGTGTCTTTCAAGGAGCGCT 59.893 50.000 11.27 11.27 0.00 5.92
56 57 0.235926 GTGTGTCTTTCAAGGAGCGC 59.764 55.000 0.00 0.00 0.00 5.92
57 58 0.508641 CGTGTGTCTTTCAAGGAGCG 59.491 55.000 0.00 0.00 0.00 5.03
58 59 1.865865 TCGTGTGTCTTTCAAGGAGC 58.134 50.000 0.00 0.00 0.00 4.70
59 60 3.246226 CAGTTCGTGTGTCTTTCAAGGAG 59.754 47.826 0.00 0.00 0.00 3.69
60 61 3.194861 CAGTTCGTGTGTCTTTCAAGGA 58.805 45.455 0.00 0.00 0.00 3.36
61 62 2.286418 GCAGTTCGTGTGTCTTTCAAGG 60.286 50.000 0.00 0.00 0.00 3.61
62 63 2.286418 GGCAGTTCGTGTGTCTTTCAAG 60.286 50.000 0.00 0.00 0.00 3.02
63 64 1.668751 GGCAGTTCGTGTGTCTTTCAA 59.331 47.619 0.00 0.00 0.00 2.69
64 65 1.295792 GGCAGTTCGTGTGTCTTTCA 58.704 50.000 0.00 0.00 0.00 2.69
65 66 1.295792 TGGCAGTTCGTGTGTCTTTC 58.704 50.000 0.00 0.00 0.00 2.62
66 67 1.670811 CTTGGCAGTTCGTGTGTCTTT 59.329 47.619 0.00 0.00 0.00 2.52
67 68 1.134521 TCTTGGCAGTTCGTGTGTCTT 60.135 47.619 0.00 0.00 0.00 3.01
68 69 0.464036 TCTTGGCAGTTCGTGTGTCT 59.536 50.000 0.00 0.00 0.00 3.41
69 70 1.461127 GATCTTGGCAGTTCGTGTGTC 59.539 52.381 0.00 0.00 0.00 3.67
70 71 1.070758 AGATCTTGGCAGTTCGTGTGT 59.929 47.619 0.00 0.00 0.00 3.72
71 72 1.462283 CAGATCTTGGCAGTTCGTGTG 59.538 52.381 0.00 0.00 0.00 3.82
72 73 1.344438 TCAGATCTTGGCAGTTCGTGT 59.656 47.619 0.00 0.00 0.00 4.49
73 74 2.084610 TCAGATCTTGGCAGTTCGTG 57.915 50.000 0.00 0.00 0.00 4.35
74 75 2.613977 CCTTCAGATCTTGGCAGTTCGT 60.614 50.000 0.00 0.00 0.00 3.85
75 76 2.005451 CCTTCAGATCTTGGCAGTTCG 58.995 52.381 0.00 0.00 0.00 3.95
76 77 2.026822 TCCCTTCAGATCTTGGCAGTTC 60.027 50.000 0.00 0.00 0.00 3.01
77 78 1.988107 TCCCTTCAGATCTTGGCAGTT 59.012 47.619 0.00 0.00 0.00 3.16
78 79 1.661463 TCCCTTCAGATCTTGGCAGT 58.339 50.000 0.00 0.00 0.00 4.40
79 80 2.363683 GTTCCCTTCAGATCTTGGCAG 58.636 52.381 0.00 0.00 0.00 4.85
80 81 1.004745 GGTTCCCTTCAGATCTTGGCA 59.995 52.381 0.00 0.00 0.00 4.92
81 82 1.004745 TGGTTCCCTTCAGATCTTGGC 59.995 52.381 0.00 0.00 0.00 4.52
82 83 3.084786 GTTGGTTCCCTTCAGATCTTGG 58.915 50.000 0.00 0.00 0.00 3.61
83 84 3.084786 GGTTGGTTCCCTTCAGATCTTG 58.915 50.000 0.00 0.00 0.00 3.02
84 85 2.290323 CGGTTGGTTCCCTTCAGATCTT 60.290 50.000 0.00 0.00 0.00 2.40
85 86 1.279271 CGGTTGGTTCCCTTCAGATCT 59.721 52.381 0.00 0.00 0.00 2.75
86 87 1.278127 TCGGTTGGTTCCCTTCAGATC 59.722 52.381 0.00 0.00 0.00 2.75
87 88 1.358152 TCGGTTGGTTCCCTTCAGAT 58.642 50.000 0.00 0.00 0.00 2.90
88 89 1.278127 GATCGGTTGGTTCCCTTCAGA 59.722 52.381 0.00 0.00 0.00 3.27
89 90 1.279271 AGATCGGTTGGTTCCCTTCAG 59.721 52.381 0.00 0.00 0.00 3.02
90 91 1.278127 GAGATCGGTTGGTTCCCTTCA 59.722 52.381 0.00 0.00 0.00 3.02
91 92 1.739371 CGAGATCGGTTGGTTCCCTTC 60.739 57.143 0.00 0.00 35.37 3.46
92 93 0.249398 CGAGATCGGTTGGTTCCCTT 59.751 55.000 0.00 0.00 35.37 3.95
93 94 1.898154 CGAGATCGGTTGGTTCCCT 59.102 57.895 0.00 0.00 35.37 4.20
94 95 4.515404 CGAGATCGGTTGGTTCCC 57.485 61.111 0.00 0.00 35.37 3.97
104 105 1.202582 AGAGTTTGTGTCCCGAGATCG 59.797 52.381 0.00 0.00 39.44 3.69
105 106 2.231478 TGAGAGTTTGTGTCCCGAGATC 59.769 50.000 0.00 0.00 0.00 2.75
106 107 2.028930 GTGAGAGTTTGTGTCCCGAGAT 60.029 50.000 0.00 0.00 0.00 2.75
107 108 1.340248 GTGAGAGTTTGTGTCCCGAGA 59.660 52.381 0.00 0.00 0.00 4.04
108 109 1.068588 TGTGAGAGTTTGTGTCCCGAG 59.931 52.381 0.00 0.00 0.00 4.63
109 110 1.116308 TGTGAGAGTTTGTGTCCCGA 58.884 50.000 0.00 0.00 0.00 5.14
110 111 1.800586 CATGTGAGAGTTTGTGTCCCG 59.199 52.381 0.00 0.00 0.00 5.14
111 112 1.537202 GCATGTGAGAGTTTGTGTCCC 59.463 52.381 0.00 0.00 0.00 4.46
112 113 1.537202 GGCATGTGAGAGTTTGTGTCC 59.463 52.381 0.00 0.00 0.00 4.02
113 114 1.537202 GGGCATGTGAGAGTTTGTGTC 59.463 52.381 0.00 0.00 0.00 3.67
114 115 1.143684 AGGGCATGTGAGAGTTTGTGT 59.856 47.619 0.00 0.00 0.00 3.72
115 116 1.901591 AGGGCATGTGAGAGTTTGTG 58.098 50.000 0.00 0.00 0.00 3.33
116 117 2.624838 CAAAGGGCATGTGAGAGTTTGT 59.375 45.455 0.00 0.00 0.00 2.83
117 118 2.608752 GCAAAGGGCATGTGAGAGTTTG 60.609 50.000 0.00 0.00 43.97 2.93
118 119 1.615392 GCAAAGGGCATGTGAGAGTTT 59.385 47.619 0.00 0.00 43.97 2.66
119 120 1.251251 GCAAAGGGCATGTGAGAGTT 58.749 50.000 0.00 0.00 43.97 3.01
120 121 2.952714 GCAAAGGGCATGTGAGAGT 58.047 52.632 0.00 0.00 43.97 3.24
130 131 3.365265 CCGACACCAGCAAAGGGC 61.365 66.667 0.00 0.00 45.30 5.19
131 132 1.002134 ATCCGACACCAGCAAAGGG 60.002 57.895 0.00 0.00 0.00 3.95
132 133 1.361668 CGATCCGACACCAGCAAAGG 61.362 60.000 0.00 0.00 0.00 3.11
133 134 0.389817 TCGATCCGACACCAGCAAAG 60.390 55.000 0.00 0.00 0.00 2.77
134 135 0.034198 TTCGATCCGACACCAGCAAA 59.966 50.000 0.00 0.00 34.89 3.68
135 136 0.249120 ATTCGATCCGACACCAGCAA 59.751 50.000 0.00 0.00 34.89 3.91
136 137 1.107945 TATTCGATCCGACACCAGCA 58.892 50.000 0.00 0.00 34.89 4.41
137 138 2.329379 GATATTCGATCCGACACCAGC 58.671 52.381 0.00 0.00 34.89 4.85
138 139 2.031069 ACGATATTCGATCCGACACCAG 60.031 50.000 3.62 0.00 43.74 4.00
139 140 1.951602 ACGATATTCGATCCGACACCA 59.048 47.619 3.62 0.00 43.74 4.17
140 141 2.582687 GACGATATTCGATCCGACACC 58.417 52.381 3.62 0.00 43.74 4.16
141 142 2.096565 TCGACGATATTCGATCCGACAC 60.097 50.000 3.62 0.00 43.74 3.67
142 143 2.137523 TCGACGATATTCGATCCGACA 58.862 47.619 3.62 0.00 43.74 4.35
143 144 2.474196 CCTCGACGATATTCGATCCGAC 60.474 54.545 0.00 0.00 46.53 4.79
144 145 1.730612 CCTCGACGATATTCGATCCGA 59.269 52.381 0.00 8.32 46.53 4.55
145 146 1.463831 ACCTCGACGATATTCGATCCG 59.536 52.381 0.00 4.71 46.53 4.18
146 147 3.181512 GGTACCTCGACGATATTCGATCC 60.182 52.174 4.06 0.00 46.53 3.36
147 148 3.434641 TGGTACCTCGACGATATTCGATC 59.565 47.826 14.36 0.00 46.53 3.69
148 149 3.405831 TGGTACCTCGACGATATTCGAT 58.594 45.455 14.36 0.00 46.53 3.59
149 150 2.804527 CTGGTACCTCGACGATATTCGA 59.195 50.000 14.36 0.00 43.74 3.71
150 151 2.804527 TCTGGTACCTCGACGATATTCG 59.195 50.000 14.36 0.00 46.93 3.34
151 152 4.063689 TCTCTGGTACCTCGACGATATTC 58.936 47.826 14.36 0.00 0.00 1.75
152 153 4.066490 CTCTCTGGTACCTCGACGATATT 58.934 47.826 14.36 0.00 0.00 1.28
153 154 3.324268 TCTCTCTGGTACCTCGACGATAT 59.676 47.826 14.36 0.00 0.00 1.63
154 155 2.697229 TCTCTCTGGTACCTCGACGATA 59.303 50.000 14.36 0.00 0.00 2.92
155 156 1.485480 TCTCTCTGGTACCTCGACGAT 59.515 52.381 14.36 0.00 0.00 3.73
156 157 0.900421 TCTCTCTGGTACCTCGACGA 59.100 55.000 14.36 0.00 0.00 4.20
157 158 1.008329 GTCTCTCTGGTACCTCGACG 58.992 60.000 14.36 4.61 0.00 5.12
158 159 2.406596 AGTCTCTCTGGTACCTCGAC 57.593 55.000 14.36 11.53 0.00 4.20
159 160 3.436577 AAAGTCTCTCTGGTACCTCGA 57.563 47.619 14.36 8.77 0.00 4.04
160 161 5.221087 GGAATAAAGTCTCTCTGGTACCTCG 60.221 48.000 14.36 4.39 0.00 4.63
161 162 5.657302 TGGAATAAAGTCTCTCTGGTACCTC 59.343 44.000 14.36 0.00 0.00 3.85
162 163 5.590818 TGGAATAAAGTCTCTCTGGTACCT 58.409 41.667 14.36 0.00 0.00 3.08
163 164 5.934402 TGGAATAAAGTCTCTCTGGTACC 57.066 43.478 4.43 4.43 0.00 3.34
164 165 6.590677 GTGTTGGAATAAAGTCTCTCTGGTAC 59.409 42.308 0.00 0.00 0.00 3.34
165 166 6.571731 CGTGTTGGAATAAAGTCTCTCTGGTA 60.572 42.308 0.00 0.00 0.00 3.25
166 167 5.552178 GTGTTGGAATAAAGTCTCTCTGGT 58.448 41.667 0.00 0.00 0.00 4.00
167 168 4.627467 CGTGTTGGAATAAAGTCTCTCTGG 59.373 45.833 0.00 0.00 0.00 3.86
168 169 4.092091 GCGTGTTGGAATAAAGTCTCTCTG 59.908 45.833 0.00 0.00 0.00 3.35
169 170 4.246458 GCGTGTTGGAATAAAGTCTCTCT 58.754 43.478 0.00 0.00 0.00 3.10
170 171 3.371285 GGCGTGTTGGAATAAAGTCTCTC 59.629 47.826 0.00 0.00 0.00 3.20
171 172 3.244422 TGGCGTGTTGGAATAAAGTCTCT 60.244 43.478 0.00 0.00 0.00 3.10
172 173 3.071479 TGGCGTGTTGGAATAAAGTCTC 58.929 45.455 0.00 0.00 0.00 3.36
173 174 3.134574 TGGCGTGTTGGAATAAAGTCT 57.865 42.857 0.00 0.00 0.00 3.24
174 175 4.165779 CAATGGCGTGTTGGAATAAAGTC 58.834 43.478 0.00 0.00 0.00 3.01
175 176 3.572255 ACAATGGCGTGTTGGAATAAAGT 59.428 39.130 2.86 0.00 0.00 2.66
176 177 4.165779 GACAATGGCGTGTTGGAATAAAG 58.834 43.478 0.00 0.00 0.00 1.85
177 178 3.365465 CGACAATGGCGTGTTGGAATAAA 60.365 43.478 0.00 0.00 30.35 1.40
178 179 2.160615 CGACAATGGCGTGTTGGAATAA 59.839 45.455 0.00 0.00 30.35 1.40
179 180 1.735018 CGACAATGGCGTGTTGGAATA 59.265 47.619 0.00 0.00 30.35 1.75
180 181 0.521291 CGACAATGGCGTGTTGGAAT 59.479 50.000 0.00 0.00 30.35 3.01
181 182 1.945522 CGACAATGGCGTGTTGGAA 59.054 52.632 0.00 0.00 30.35 3.53
182 183 2.612567 GCGACAATGGCGTGTTGGA 61.613 57.895 11.20 0.00 34.02 3.53
183 184 2.126888 GCGACAATGGCGTGTTGG 60.127 61.111 11.20 1.23 34.02 3.77
184 185 2.126888 GGCGACAATGGCGTGTTG 60.127 61.111 11.20 4.42 36.18 3.33
185 186 2.593148 TGGCGACAATGGCGTGTT 60.593 55.556 11.20 0.00 37.44 3.32
186 187 3.353836 GTGGCGACAATGGCGTGT 61.354 61.111 11.20 0.00 46.06 4.49
187 188 4.101790 GGTGGCGACAATGGCGTG 62.102 66.667 11.20 0.00 46.06 5.34
188 189 4.634703 TGGTGGCGACAATGGCGT 62.635 61.111 11.20 0.00 46.06 5.68
189 190 4.101790 GTGGTGGCGACAATGGCG 62.102 66.667 3.09 3.09 46.06 5.69
190 191 3.747976 GGTGGTGGCGACAATGGC 61.748 66.667 0.00 0.00 46.06 4.40
191 192 2.034066 AGGTGGTGGCGACAATGG 59.966 61.111 0.00 0.00 46.06 3.16
192 193 2.390599 CGAGGTGGTGGCGACAATG 61.391 63.158 0.00 0.00 46.06 2.82
193 194 2.047274 CGAGGTGGTGGCGACAAT 60.047 61.111 0.00 0.00 46.06 2.71
194 195 3.509137 GACGAGGTGGTGGCGACAA 62.509 63.158 0.00 0.00 46.06 3.18
195 196 3.986006 GACGAGGTGGTGGCGACA 61.986 66.667 0.00 0.00 38.70 4.35
198 199 4.129737 ATCGACGAGGTGGTGGCG 62.130 66.667 3.01 0.00 0.00 5.69
199 200 2.509336 CATCGACGAGGTGGTGGC 60.509 66.667 3.01 0.00 0.00 5.01
200 201 1.153823 GTCATCGACGAGGTGGTGG 60.154 63.158 9.58 0.00 0.00 4.61
201 202 4.478195 GTCATCGACGAGGTGGTG 57.522 61.111 9.58 0.00 0.00 4.17
210 211 0.992802 GTTTCTCTGGCGTCATCGAC 59.007 55.000 0.00 0.00 46.54 4.20
211 212 0.601057 TGTTTCTCTGGCGTCATCGA 59.399 50.000 0.00 0.00 39.71 3.59
212 213 1.428448 TTGTTTCTCTGGCGTCATCG 58.572 50.000 0.00 0.00 40.37 3.84
213 214 3.896648 TTTTGTTTCTCTGGCGTCATC 57.103 42.857 0.00 0.00 0.00 2.92
214 215 3.243401 GGTTTTTGTTTCTCTGGCGTCAT 60.243 43.478 0.00 0.00 0.00 3.06
215 216 2.098443 GGTTTTTGTTTCTCTGGCGTCA 59.902 45.455 0.00 0.00 0.00 4.35
216 217 2.357952 AGGTTTTTGTTTCTCTGGCGTC 59.642 45.455 0.00 0.00 0.00 5.19
217 218 2.099098 CAGGTTTTTGTTTCTCTGGCGT 59.901 45.455 0.00 0.00 0.00 5.68
218 219 2.357637 TCAGGTTTTTGTTTCTCTGGCG 59.642 45.455 0.00 0.00 0.00 5.69
219 220 3.632145 TCTCAGGTTTTTGTTTCTCTGGC 59.368 43.478 0.00 0.00 0.00 4.85
220 221 5.835113 TTCTCAGGTTTTTGTTTCTCTGG 57.165 39.130 0.00 0.00 0.00 3.86
221 222 8.707938 ATTTTTCTCAGGTTTTTGTTTCTCTG 57.292 30.769 0.00 0.00 0.00 3.35
231 232 9.083080 CGTCTTGTTTTATTTTTCTCAGGTTTT 57.917 29.630 0.00 0.00 0.00 2.43
232 233 7.704899 CCGTCTTGTTTTATTTTTCTCAGGTTT 59.295 33.333 0.00 0.00 0.00 3.27
233 234 7.067737 TCCGTCTTGTTTTATTTTTCTCAGGTT 59.932 33.333 0.00 0.00 0.00 3.50
234 235 6.544564 TCCGTCTTGTTTTATTTTTCTCAGGT 59.455 34.615 0.00 0.00 0.00 4.00
235 236 6.966021 TCCGTCTTGTTTTATTTTTCTCAGG 58.034 36.000 0.00 0.00 0.00 3.86
236 237 7.538678 CCATCCGTCTTGTTTTATTTTTCTCAG 59.461 37.037 0.00 0.00 0.00 3.35
237 238 7.367285 CCATCCGTCTTGTTTTATTTTTCTCA 58.633 34.615 0.00 0.00 0.00 3.27
238 239 6.806739 CCCATCCGTCTTGTTTTATTTTTCTC 59.193 38.462 0.00 0.00 0.00 2.87
239 240 6.266786 ACCCATCCGTCTTGTTTTATTTTTCT 59.733 34.615 0.00 0.00 0.00 2.52
240 241 6.452242 ACCCATCCGTCTTGTTTTATTTTTC 58.548 36.000 0.00 0.00 0.00 2.29
241 242 6.413783 ACCCATCCGTCTTGTTTTATTTTT 57.586 33.333 0.00 0.00 0.00 1.94
242 243 5.047590 GGACCCATCCGTCTTGTTTTATTTT 60.048 40.000 0.00 0.00 34.48 1.82
243 244 4.461431 GGACCCATCCGTCTTGTTTTATTT 59.539 41.667 0.00 0.00 34.48 1.40
244 245 4.014406 GGACCCATCCGTCTTGTTTTATT 58.986 43.478 0.00 0.00 34.48 1.40
245 246 3.617284 GGACCCATCCGTCTTGTTTTAT 58.383 45.455 0.00 0.00 34.48 1.40
246 247 3.062122 GGACCCATCCGTCTTGTTTTA 57.938 47.619 0.00 0.00 34.48 1.52
247 248 1.905637 GGACCCATCCGTCTTGTTTT 58.094 50.000 0.00 0.00 34.48 2.43
248 249 3.644861 GGACCCATCCGTCTTGTTT 57.355 52.632 0.00 0.00 34.48 2.83
257 258 0.621862 AAGAGGAGTGGGACCCATCC 60.622 60.000 24.20 24.20 45.42 3.51
258 259 0.543749 CAAGAGGAGTGGGACCCATC 59.456 60.000 18.51 14.59 35.28 3.51
259 260 0.178861 ACAAGAGGAGTGGGACCCAT 60.179 55.000 18.51 5.78 35.28 4.00
260 261 0.836400 GACAAGAGGAGTGGGACCCA 60.836 60.000 9.95 9.95 0.00 4.51
261 262 1.889530 CGACAAGAGGAGTGGGACCC 61.890 65.000 2.45 2.45 0.00 4.46
262 263 1.186267 ACGACAAGAGGAGTGGGACC 61.186 60.000 0.00 0.00 0.00 4.46
263 264 0.244178 GACGACAAGAGGAGTGGGAC 59.756 60.000 0.00 0.00 0.00 4.46
264 265 0.178973 TGACGACAAGAGGAGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
265 266 0.679505 TTGACGACAAGAGGAGTGGG 59.320 55.000 0.00 0.00 0.00 4.61
266 267 1.784525 GTTGACGACAAGAGGAGTGG 58.215 55.000 0.00 0.00 36.64 4.00
267 268 1.001706 TCGTTGACGACAAGAGGAGTG 60.002 52.381 0.00 0.00 44.22 3.51
268 269 1.267261 CTCGTTGACGACAAGAGGAGT 59.733 52.381 0.00 0.00 44.22 3.85
269 270 1.401670 CCTCGTTGACGACAAGAGGAG 60.402 57.143 26.00 19.75 44.45 3.69
270 271 0.596577 CCTCGTTGACGACAAGAGGA 59.403 55.000 26.00 14.08 44.45 3.71
271 272 1.009389 GCCTCGTTGACGACAAGAGG 61.009 60.000 25.90 25.90 44.22 3.69
272 273 1.009389 GGCCTCGTTGACGACAAGAG 61.009 60.000 0.00 9.65 44.22 2.85
273 274 1.006571 GGCCTCGTTGACGACAAGA 60.007 57.895 0.00 0.71 44.22 3.02
274 275 2.372690 CGGCCTCGTTGACGACAAG 61.373 63.158 0.00 0.00 44.22 3.16
275 276 2.355363 CGGCCTCGTTGACGACAA 60.355 61.111 0.00 0.00 44.22 3.18
291 292 4.814294 CCTCTTTCCCGTCCGGCG 62.814 72.222 10.75 10.75 40.95 6.46
292 293 3.372554 CTCCTCTTTCCCGTCCGGC 62.373 68.421 0.00 0.00 0.00 6.13
293 294 2.722201 CCTCCTCTTTCCCGTCCGG 61.722 68.421 0.00 0.00 0.00 5.14
294 295 2.722201 CCCTCCTCTTTCCCGTCCG 61.722 68.421 0.00 0.00 0.00 4.79
295 296 2.368011 CCCCTCCTCTTTCCCGTCC 61.368 68.421 0.00 0.00 0.00 4.79
296 297 2.368011 CCCCCTCCTCTTTCCCGTC 61.368 68.421 0.00 0.00 0.00 4.79
297 298 2.285442 CCCCCTCCTCTTTCCCGT 60.285 66.667 0.00 0.00 0.00 5.28
298 299 2.040606 TCCCCCTCCTCTTTCCCG 59.959 66.667 0.00 0.00 0.00 5.14
299 300 2.001838 GGTCCCCCTCCTCTTTCCC 61.002 68.421 0.00 0.00 0.00 3.97
300 301 2.368011 CGGTCCCCCTCCTCTTTCC 61.368 68.421 0.00 0.00 0.00 3.13
301 302 1.305887 TCGGTCCCCCTCCTCTTTC 60.306 63.158 0.00 0.00 0.00 2.62
302 303 1.306226 CTCGGTCCCCCTCCTCTTT 60.306 63.158 0.00 0.00 0.00 2.52
303 304 2.364961 CTCGGTCCCCCTCCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
304 305 3.756783 CCTCGGTCCCCCTCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
305 306 4.077180 ACCTCGGTCCCCCTCCTC 62.077 72.222 0.00 0.00 0.00 3.71
306 307 4.400251 CACCTCGGTCCCCCTCCT 62.400 72.222 0.00 0.00 0.00 3.69
316 317 4.087892 CTCCTGCCACCACCTCGG 62.088 72.222 0.00 0.00 42.50 4.63
317 318 2.883828 AACTCCTGCCACCACCTCG 61.884 63.158 0.00 0.00 0.00 4.63
318 319 1.302832 CAACTCCTGCCACCACCTC 60.303 63.158 0.00 0.00 0.00 3.85
319 320 2.078665 ACAACTCCTGCCACCACCT 61.079 57.895 0.00 0.00 0.00 4.00
320 321 1.898574 CACAACTCCTGCCACCACC 60.899 63.158 0.00 0.00 0.00 4.61
321 322 1.898574 CCACAACTCCTGCCACCAC 60.899 63.158 0.00 0.00 0.00 4.16
322 323 2.382770 ACCACAACTCCTGCCACCA 61.383 57.895 0.00 0.00 0.00 4.17
323 324 1.898574 CACCACAACTCCTGCCACC 60.899 63.158 0.00 0.00 0.00 4.61
324 325 1.898574 CCACCACAACTCCTGCCAC 60.899 63.158 0.00 0.00 0.00 5.01
325 326 2.515398 CCACCACAACTCCTGCCA 59.485 61.111 0.00 0.00 0.00 4.92
326 327 2.985847 GCCACCACAACTCCTGCC 60.986 66.667 0.00 0.00 0.00 4.85
327 328 3.357079 CGCCACCACAACTCCTGC 61.357 66.667 0.00 0.00 0.00 4.85
328 329 2.669569 CCGCCACCACAACTCCTG 60.670 66.667 0.00 0.00 0.00 3.86
329 330 3.168528 ACCGCCACCACAACTCCT 61.169 61.111 0.00 0.00 0.00 3.69
330 331 2.978010 CACCGCCACCACAACTCC 60.978 66.667 0.00 0.00 0.00 3.85
331 332 2.978010 CCACCGCCACCACAACTC 60.978 66.667 0.00 0.00 0.00 3.01
342 343 3.668980 TAACCTAAGCCGCCACCGC 62.669 63.158 0.00 0.00 0.00 5.68
343 344 1.812507 GTAACCTAAGCCGCCACCG 60.813 63.158 0.00 0.00 0.00 4.94
344 345 1.812507 CGTAACCTAAGCCGCCACC 60.813 63.158 0.00 0.00 0.00 4.61
345 346 0.804933 CTCGTAACCTAAGCCGCCAC 60.805 60.000 0.00 0.00 0.00 5.01
346 347 1.514087 CTCGTAACCTAAGCCGCCA 59.486 57.895 0.00 0.00 0.00 5.69
347 348 1.227176 CCTCGTAACCTAAGCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
348 349 1.881709 GCCTCGTAACCTAAGCCGC 60.882 63.158 0.00 0.00 0.00 6.53
349 350 1.588139 CGCCTCGTAACCTAAGCCG 60.588 63.158 0.00 0.00 0.00 5.52
350 351 0.248949 CTCGCCTCGTAACCTAAGCC 60.249 60.000 0.00 0.00 0.00 4.35
351 352 0.248949 CCTCGCCTCGTAACCTAAGC 60.249 60.000 0.00 0.00 0.00 3.09
352 353 1.334243 CTCCTCGCCTCGTAACCTAAG 59.666 57.143 0.00 0.00 0.00 2.18
353 354 1.340405 ACTCCTCGCCTCGTAACCTAA 60.340 52.381 0.00 0.00 0.00 2.69
354 355 0.254178 ACTCCTCGCCTCGTAACCTA 59.746 55.000 0.00 0.00 0.00 3.08
355 356 1.001145 ACTCCTCGCCTCGTAACCT 60.001 57.895 0.00 0.00 0.00 3.50
356 357 1.432657 GACTCCTCGCCTCGTAACC 59.567 63.158 0.00 0.00 0.00 2.85
357 358 1.062206 CGACTCCTCGCCTCGTAAC 59.938 63.158 0.00 0.00 31.91 2.50
358 359 1.376424 ACGACTCCTCGCCTCGTAA 60.376 57.895 0.00 0.00 44.33 3.18
359 360 2.104859 CACGACTCCTCGCCTCGTA 61.105 63.158 0.00 0.00 44.33 3.43
360 361 3.432588 CACGACTCCTCGCCTCGT 61.433 66.667 0.00 0.00 44.33 4.18
361 362 4.180946 CCACGACTCCTCGCCTCG 62.181 72.222 0.00 0.00 44.33 4.63
362 363 2.750637 TCCACGACTCCTCGCCTC 60.751 66.667 0.00 0.00 44.33 4.70
363 364 2.559922 ATCTCCACGACTCCTCGCCT 62.560 60.000 0.00 0.00 44.33 5.52
364 365 2.122167 ATCTCCACGACTCCTCGCC 61.122 63.158 0.00 0.00 44.33 5.54
365 366 1.064946 CATCTCCACGACTCCTCGC 59.935 63.158 0.00 0.00 44.33 5.03
366 367 1.664873 TACATCTCCACGACTCCTCG 58.335 55.000 0.00 0.00 46.06 4.63
367 368 4.822896 AGTATTACATCTCCACGACTCCTC 59.177 45.833 0.00 0.00 0.00 3.71
368 369 4.794334 AGTATTACATCTCCACGACTCCT 58.206 43.478 0.00 0.00 0.00 3.69
369 370 6.821031 ATAGTATTACATCTCCACGACTCC 57.179 41.667 0.00 0.00 0.00 3.85
370 371 9.001542 AGTAATAGTATTACATCTCCACGACTC 57.998 37.037 27.10 3.47 0.00 3.36
371 372 8.921353 AGTAATAGTATTACATCTCCACGACT 57.079 34.615 27.10 7.89 0.00 4.18
373 374 9.224267 GGTAGTAATAGTATTACATCTCCACGA 57.776 37.037 27.10 2.38 0.00 4.35
374 375 9.228949 AGGTAGTAATAGTATTACATCTCCACG 57.771 37.037 27.10 0.00 0.00 4.94
410 411 9.098355 CGATTTCCTTTCTTTTCTTTTCCTTTT 57.902 29.630 0.00 0.00 0.00 2.27
478 484 3.243128 TCGCAGAGTTTAAAGCCCC 57.757 52.632 0.00 0.00 0.00 5.80
663 681 0.106521 GATGAGGAGGAGGCAAGAGC 59.893 60.000 0.00 0.00 41.10 4.09
664 682 1.688197 GAGATGAGGAGGAGGCAAGAG 59.312 57.143 0.00 0.00 0.00 2.85
665 683 1.786937 GAGATGAGGAGGAGGCAAGA 58.213 55.000 0.00 0.00 0.00 3.02
668 686 2.130426 GCGAGATGAGGAGGAGGCA 61.130 63.158 0.00 0.00 0.00 4.75
669 687 0.538516 TAGCGAGATGAGGAGGAGGC 60.539 60.000 0.00 0.00 0.00 4.70
701 724 2.449031 ATCTTTGCGCGTGGTGAGGA 62.449 55.000 8.43 0.00 0.00 3.71
718 741 3.203716 GGAAATACGAGGGTTGTGGATC 58.796 50.000 0.00 0.00 0.00 3.36
719 742 2.574369 TGGAAATACGAGGGTTGTGGAT 59.426 45.455 0.00 0.00 0.00 3.41
738 761 0.869068 TGTTGTGCGGAAATACGTGG 59.131 50.000 0.00 0.00 35.98 4.94
785 813 1.968017 ACGGCTCGGTTCGTGTCTA 60.968 57.895 0.00 0.00 38.25 2.59
831 859 0.749818 TTTTGCGCTGGTGTCCTCAA 60.750 50.000 9.73 0.00 0.00 3.02
832 860 0.749818 TTTTTGCGCTGGTGTCCTCA 60.750 50.000 9.73 0.00 0.00 3.86
990 1040 4.819761 GAGTCCATCGCGGCAGCA 62.820 66.667 10.08 0.00 45.49 4.41
1005 1055 2.412112 GTGTAGTAGCCGGCGGAG 59.588 66.667 33.44 3.96 0.00 4.63
1107 1157 0.915364 AGAAAGGGACAGATCTGGGC 59.085 55.000 26.08 16.90 34.19 5.36
1209 1260 8.739039 GGCCAGCCAAAAAGAAATAAATAAAAT 58.261 29.630 3.12 0.00 35.81 1.82
1210 1261 7.941790 AGGCCAGCCAAAAAGAAATAAATAAAA 59.058 29.630 12.03 0.00 38.92 1.52
1214 1265 5.247862 CAGGCCAGCCAAAAAGAAATAAAT 58.752 37.500 12.03 0.00 38.92 1.40
1230 1291 1.073722 TGAGCAGTTTCCAGGCCAG 59.926 57.895 5.01 0.00 0.00 4.85
1248 1309 1.160137 GAGCAACCGAAGCATGAAGT 58.840 50.000 0.00 0.00 0.00 3.01
1295 1356 2.502130 TGGAAGCGTGATATTGGTGGTA 59.498 45.455 0.00 0.00 0.00 3.25
1315 1380 6.809689 TGCCGACGGAATAACAATAGTATATG 59.190 38.462 20.50 0.00 0.00 1.78
1365 1430 2.487934 CCGGACTAGGCAAATCTCATG 58.512 52.381 0.00 0.00 0.00 3.07
1659 1733 4.338400 AGCTGCATACTACGTATCTCAACA 59.662 41.667 1.02 0.00 0.00 3.33
1795 1883 9.138062 GCACAAAATCAATGTTATGTCATTACA 57.862 29.630 7.09 7.09 40.69 2.41
1960 2049 9.420551 GAGTTAGTAAAGCTTACAGTGTATTGT 57.579 33.333 3.28 0.00 35.09 2.71
2025 2114 1.005805 TGCAGGGATAGGCAACAACAT 59.994 47.619 0.00 0.00 37.03 2.71
2035 2125 4.081420 AGACTGTACAAACTGCAGGGATAG 60.081 45.833 19.93 7.26 36.93 2.08
2095 2206 1.446907 AGCACGAAATGGAGCTCAAG 58.553 50.000 17.19 2.10 30.05 3.02
2098 2209 1.731720 AGAAGCACGAAATGGAGCTC 58.268 50.000 4.71 4.71 36.07 4.09
2104 2215 3.885484 AGTCACAAGAAGCACGAAATG 57.115 42.857 0.00 0.00 0.00 2.32
2134 2245 5.362556 AAAACCATGTGAGAAATCACTCG 57.637 39.130 9.57 1.37 40.97 4.18
2164 2276 2.137523 CCTTTGAACCATGCTGCAAAC 58.862 47.619 6.36 0.00 0.00 2.93
2451 2563 1.355210 CGTTGCTGAAAAGCACCGT 59.645 52.632 9.17 0.00 43.88 4.83
2807 2919 4.113354 GGTGAAGTATCTCAGGCGTAAAG 58.887 47.826 0.00 0.00 0.00 1.85
2808 2920 3.767673 AGGTGAAGTATCTCAGGCGTAAA 59.232 43.478 0.00 0.00 0.00 2.01
2809 2921 3.362706 AGGTGAAGTATCTCAGGCGTAA 58.637 45.455 0.00 0.00 0.00 3.18
3050 3162 2.737252 CGGGTTCAAGAAGTAGCTGAAC 59.263 50.000 0.00 0.00 38.38 3.18
3071 3183 6.420008 GGCATATCACATGCTGAATTCTTTTC 59.580 38.462 7.05 0.00 44.02 2.29
3220 3332 8.298854 CAGGAAGAAGATATCTGTACTGATCAG 58.701 40.741 21.37 21.37 38.79 2.90
3233 3345 3.054139 TGCAGTTGCCAGGAAGAAGATAT 60.054 43.478 1.06 0.00 41.18 1.63
3277 3389 3.427098 ATCACATCTTGATGCAAACAGCG 60.427 43.478 10.20 0.00 43.87 5.18
3461 3574 6.760770 CCTCTTCCAAAAATAAAACAAGCACA 59.239 34.615 0.00 0.00 0.00 4.57
3572 3696 6.981762 AAATGAAAAACTGCAAATGTCACA 57.018 29.167 0.00 0.00 0.00 3.58
3635 3763 9.678941 CTGTAGTAAATCATCAGCGAGTATAAA 57.321 33.333 0.00 0.00 0.00 1.40
3640 3768 5.584253 ACTGTAGTAAATCATCAGCGAGT 57.416 39.130 0.00 0.00 0.00 4.18
3643 3771 8.854312 CATATGTACTGTAGTAAATCATCAGCG 58.146 37.037 0.00 0.00 31.33 5.18
3658 3786 4.220602 TGTCACTGAGTGCATATGTACTGT 59.779 41.667 28.25 18.48 41.05 3.55
3667 3795 2.679059 GCCATACTGTCACTGAGTGCAT 60.679 50.000 7.93 3.27 32.98 3.96
3679 3807 2.273449 GCAGGCAGGCCATACTGT 59.727 61.111 13.63 0.00 40.59 3.55
3750 3881 2.731968 GCAACGGCATCACATGTTAAGG 60.732 50.000 0.00 0.00 40.72 2.69
3815 3946 3.820467 CCTGTGACTGTTGGCAAAAGATA 59.180 43.478 23.90 9.09 0.00 1.98
4102 5850 4.618489 GGCAACGTTTCTCTGAAATCATTG 59.382 41.667 0.00 3.76 0.00 2.82
4104 5852 3.820467 TGGCAACGTTTCTCTGAAATCAT 59.180 39.130 0.00 0.00 42.51 2.45
4105 5853 3.003275 GTGGCAACGTTTCTCTGAAATCA 59.997 43.478 0.00 0.00 42.51 2.57
4106 5854 3.251004 AGTGGCAACGTTTCTCTGAAATC 59.749 43.478 0.00 0.00 42.51 2.17
4107 5855 3.214328 AGTGGCAACGTTTCTCTGAAAT 58.786 40.909 0.00 0.00 42.51 2.17
4155 5903 8.991026 CACATAAAATCTGCAATTTTCCTTCAA 58.009 29.630 17.24 5.66 33.73 2.69
4208 5957 1.065854 CCTCTACAACTTGCCTCCAGG 60.066 57.143 0.00 0.00 38.53 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.